Citrus Sinensis ID: 004270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----
Protein Sequence
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Secondary Structure (PSIPRED)
cccccccEEEcEEEcEEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEEccEEEEEcccEEEEEEcccEEEEEEcccccEEEEEEEccEEEEEEccccEEEEEcccccEEEEEcccEEcccccEEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccEEccccccccEEEEEcccccEEEEEEccccEEEEEcccccccEEEcccccEEEEEEEccccccEEcccEEEEEcccEEcccccEEEEEEccccEEEEEEccccccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHcccccccccccccccEEcccccccEEEEEHHHHHHcccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccccccccccEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccEEEEEEcccccEEEEEEccccccccccEcEEEEcccccEEccccccccEEEcccccccEEEccccccEEEEEEEccccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
mgifepykaigyitssvpfsvqrlgtenfVTVSVGKAFHIYNCAklnlvlvgpqlpKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEhilsididgNMFIWAFKGieenlapvghvklddkftptcimhpdtylNKVIVGSQEGSLQLWNISTKKKLYefkgwgssisscvsspaldvvavgcsdgkihvhnvrydeeLVTFTHSMRGAVTAlafssdgqpllasgassgvISIWNLEKRRLQSVIREAHDNAIISLHffanepvlmsasadnSIKMWIfdttdgdprllrfrsghsapplcIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEelklkpviafdcaeirerdwcnvvtCHMDTAQAYVWRLQNfvlgehilrpcpenptavkactisacgnfaVLGTAGGWIERFnlqsgisrgsyldmsersnyahngeVVGVACDSTNTLMIsagyhgdikvwdfkgrdlksrWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFeghtdritdfcfsedgkwllssgmdgslRIWDVILARQIDAIHVDVSItalslspnmdVLATAHVDQNGVYLWVNRcmfsgdsnidsyasgkeivsvkmpsvssvegcqdenssqpdvhrtdrvpkdsfglptfkqqipdlvtlsllpksqwqslINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYrlncfwii
Flexible Loop (DISEMBL)
mgifepykaigyiTSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIqdqqsrelsqrhvakrarklkmkeeelklkpviafdcaeirERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKfeghtdritdfcFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEgcqdenssqpdvhrtdrvPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Low Complexity Region (SEG)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGssisscvssPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARklkmkeeelklkPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered region (IsUnstruct)
**IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ*************************LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA****************************************GLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWI*
Disordered Region (DISOPRED)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS*************KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHL*****VCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered Region (DISEMBL)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV**********************RTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered Region (DISPRO)
*GIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	764	2.2.26 [Sep-21-2011]
Q8NI36	951	WD repeat-containing prot	yes	no	0.905	0.727	0.369	1e-140
O14053	902	Uncharacterized WD repeat	yes	no	0.897	0.760	0.370	1e-138
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.909	0.740	0.312	5e-98
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.536	0.243	0.241	3e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.565	0.343	0.221	3e-16
Q00808	1356	Vegetative incompatibilit	no	no	0.617	0.348	0.221	5e-14
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.536	0.268	0.205	5e-14
Q55563	1693	Uncharacterized WD repeat	N/A	no	0.583	0.263	0.244	3e-13
Q6PH57	340	Guanine nucleotide-bindin	no	no	0.286	0.644	0.251	1e-12
Q6NVM2	655	Katanin p80 WD40 repeat-c	no	no	0.243	0.283	0.288	2e-12

>sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/725 (36%), Positives = 420/725 (57%), Gaps = 33/725 (4%)

Query: 2   GIFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
            +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I
Sbjct: 68  ALFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127

Query: 60  RALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
             +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW
Sbjct: 128 CCMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIW 187

Query: 119 AFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
                EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F
Sbjct: 188 HIYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTF 243

Query: 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
            GW   +++   +PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG 
Sbjct: 244 PGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGH 302

Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
           P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct: 303 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 362

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
           D   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    
Sbjct: 363 DGPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGL 422

Query: 357 VAKRARKLKMKEEEL--KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
           + K+  K K  +  +  +L P+  F   E RE DW  ++ CH        W  Q   +G 
Sbjct: 423 INKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGA 482

Query: 415 HILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
           + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct: 483 YFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQA 537

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct: 538 HKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGL 597

Query: 533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
             DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct: 598 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLI 657

Query: 593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
           D   +D +   +S+SP  D LAT+HVD  G+YLW N  ++       S  S + + +  +
Sbjct: 658 DCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLY-------SVVSLRPLPADYV 710

Query: 653 PSVSSVEG---CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
           PS+  + G    QD   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct: 711 PSIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 766

Query: 710 NLDII 714
           NLD+I
Sbjct: 767 NLDVI 771

Involved in T-cell activation and highly co-regulated with IL2.
Homo sapiens (taxid: 9606)

>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=4 SV=1

 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/731 (37%), Positives = 416/731 (56%), Gaps = 45/731 (6%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
           I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct: 23  IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATW----SRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
            S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct: 83  KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query: 119 AFKGIEENLAPVGHVKLDDKFTP------TCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172
             K   +   P    +L   F P      T ++HP TYLNK+++G  +G+LQ+WN+   K
Sbjct: 141 --KHASKYSVP----ELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSK 194

Query: 173 KLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +++EF+ + G  I+S   +P LDV+AVG   G+I + N++    L+ F     G V + +
Sbjct: 195 RVHEFQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCS 252

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           F +DG P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS
Sbjct: 253 FRTDGTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNS 312

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSR 350
           +K WIFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS 
Sbjct: 313 LKEWIFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQST 372

Query: 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
           ELSQ  V  +A+KL ++ EELKL  + A   +  RE+ W NV+T H + + A  W  ++ 
Sbjct: 373 ELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSK 432

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            LG+H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S    
Sbjct: 433 TLGQHVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSS---- 486

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
                 V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+
Sbjct: 487 -LSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLV 545

Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A   DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+    
Sbjct: 546 AVACDDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGH 605

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV 650
            ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF   S         ++V V
Sbjct: 606 LIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVST--KALRLDDVVEV 663

Query: 651 KMPSVSS------VEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQ 704
             PSVS       VE   +  S+  D        ++     T  Q  P+L TLS LP++Q
Sbjct: 664 SAPSVSGEKGISVVEAALNVESNAED--------EEDISYRTMDQLDPNLQTLSKLPRTQ 715

Query: 705 WQSLINLDIIK 715
           WQ+LINL+ IK
Sbjct: 716 WQTLINLEAIK 726

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score =  359 bits (921), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 230/737 (31%), Positives = 386/737 (52%), Gaps = 42/737 (5%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGP-QLPKKIRA 61
           IF P++ IG +++ VPF+   LG+  ++   VGK F IY+   L+L+ V   + P  I A
Sbjct: 23  IFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVA 82

Query: 62  LASYRDYTFAAYGNHIAVVKRAHQVATWSRHS-AKVNLLLLFGEHILSIDIDGNMFIWAF 120
           L+++  Y +AAY N + + KR  +       + A V  L +FG+++ +   D ++FI+  
Sbjct: 83  LSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKK 142

Query: 121 KGIEENLAPVGHVKLD----DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
              ++      + KL            + H  TYLNK+ V ++   L L+N+ T K ++ 
Sbjct: 143 SDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVL-LFNVRTGKLVFT 201

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              +   I++   +P LD++A+G   G++ + N+R  + + T     +  +++L+F +DG
Sbjct: 202 SNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTIKIP-QSRISSLSFRTDG 260

Query: 237 QPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
              L+ G SSG +  ++L++R     L+++ RE++   +    F   +P+++++  DNS+
Sbjct: 261 SSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESY-GGVTQATFLNGQPIIVTSGGDNSL 319

Query: 293 KMWIFDTT----DGD-----PRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFS 342
           K ++FD +     GD     PR LR R GHS PP  I F  +  H +LSA +DR+   FS
Sbjct: 320 KEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFS 379

Query: 343 VIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401
           + +D QS+E+SQR H  +   ++     + K   ++A      R  +W N++T H D   
Sbjct: 380 LRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALAIENARIGEWENIITAHKDEKF 439

Query: 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461
           A  W ++N  +G        +    VK+  +S CGNF  +G++ G I  +N+QSGI R  
Sbjct: 440 ARTWDMRNKRVGRWTFDTTDDG--FVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKK 497

Query: 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521
           Y          H   V G++ D  N  M+S G  G +  +DF    L  + ++   +  +
Sbjct: 498 Y--------KLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAM 549

Query: 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 581
           VYHR + L A   DDL I + D V  R+VR+  GH++RIT F FS +G+W++S+ +D ++
Sbjct: 550 VYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTI 609

Query: 582 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NID 639
           R WD+     ID I VD   T +  SPN D+LAT HV  NG+ +W NR  F   S   ID
Sbjct: 610 RTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTID 669

Query: 640 SYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQI-PDLVTLS 698
                 E   + +PS +SV G     S   + +  + +    F   T  +QI  +L+TLS
Sbjct: 670 E----SEFARMALPS-TSVRGNDSMLSGALESNGGEDLNDIDFNTYTSLEQIDKELLTLS 724

Query: 699 LLPKSQWQSLINLDIIK 715
           + P+S+  +L++LD+I+
Sbjct: 725 IGPRSKMNTLLHLDVIR 741

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 199/467 (42%), Gaps = 57/467 (12%)

Query: 195  VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
             +A G  D  I + +   D  L    +    AV +++FS DGQ + ASG S   I +W  
Sbjct: 1086 TIASGSLDKTIKLWS--RDGRLFRTLNGHEDAVYSVSFSPDGQTI-ASGGSDKTIKLWQT 1142

Query: 255  EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314
                L   I   H+  + +++F  +   L SAS+D+SIK+W  DTT G  +LL   +GHS
Sbjct: 1143 SDGTLLKTIT-GHEQTVNNVYFSPDGKNLASASSDHSIKLW--DTTSG--QLLMTLTGHS 1197

Query: 315  APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE---EL 371
            A  + +RF  +G+ I +  +D+  +L+             R   K  + L   ++    L
Sbjct: 1198 AGVITVRFSPDGQTIAAGSEDKTVKLW------------HRQDGKLLKTLNGHQDWVNSL 1245

Query: 372  KLKP---VIAFDCAEIRERDW-------CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
               P    +A   A+   + W          +  H D+    VW +     G+ I     
Sbjct: 1246 SFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDS----VWDVNFSSDGKAIASASR 1301

Query: 422  ENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLD----------MSERSN 470
            +N   +K             G +GG +   F   S I   + LD          +S    
Sbjct: 1302 DN--TIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEV 1359

Query: 471  YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
             A N  V  V+     +++ +AG  G+I++W  +   L        ++  I +     L+
Sbjct: 1360 LAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLI 1419

Query: 531  ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
            A+   D  ++++ V   + ++   GH + +    FS DGK L S+  D ++++W+V   +
Sbjct: 1420 ASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGK 1479

Query: 591  QIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD 635
                +  H D  +  +S SP+  ++A+A  D+  + LW +   FSG+
Sbjct: 1480 FKKTLKGHTD-EVFWVSFSPDGKIIASASADKT-IRLWDS---FSGN 1521

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 204/478 (42%), Gaps = 46/478 (9%)

Query: 152  NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR 211
            N +   + + +++LW++S  K L   K     + S   S     +A G  D  I + N  
Sbjct: 781  NTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYH 840

Query: 212  YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
              E L T+      +V ++A+S D + +L SG+    I +W+ +       +   H N +
Sbjct: 841  TGECLKTYI-GHTNSVYSIAYSPDSK-ILVSGSGDRTIKLWDCQTHICIKTLH-GHTNEV 897

Query: 272  ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
             S+ F  +   L   S D S+++W   T     + L+   G++   L + F  + + + S
Sbjct: 898  CSVAFSPDGQTLACVSLDQSVRLWNCRT----GQCLKAWYGNTDWALPVAFSPDRQILAS 953

Query: 332  AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
               D+  +L+    D Q+            + +   E        IAF        D   
Sbjct: 954  GSNDKTVKLW----DWQT-----------GKYISSLEGHTDFIYGIAFS------PDSQT 992

Query: 392  VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
            + +   D++     RL N   G+   +   E+   V A      G     G+A   ++ +
Sbjct: 993  LASASTDSSV----RLWNISTGQ-CFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLW 1047

Query: 452  NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKS 510
            N+ +G    +   +SE     H+ +++G+A      L+ SA     +++WD   GR +  
Sbjct: 1048 NISTGQCLKT---LSE-----HSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGI 1099

Query: 511  RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570
                   +   ++     ++AT + D  ++++D    + ++   GHT+ + D  FS DGK
Sbjct: 1100 LRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGK 1159

Query: 571  WLLSSGMDGSLRIWDVILAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
             L S+  D ++RIWDV   +   I   H  + +++++ SP+ +V+A+   DQ  V +W
Sbjct: 1160 ILASASHDQTVRIWDVNTGKCHHICIGHTHL-VSSVAFSPDGEVVASGSQDQT-VRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 207/529 (39%), Gaps = 57/529 (10%)

Query: 106  ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
            +++I  DG  F  +++ I E  AP+        F PT     D+ + K+    + G +  
Sbjct: 769  LIAIVRDGYRFALSYRMIIEK-APLQAYTSALVFAPT-----DSMIKKIFKKEEPGWIST 822

Query: 166  -------WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218
                   WN  T+      +G GSS+ S   S     VA G  D  I +    +D    T
Sbjct: 823  ISVVEAEWNACTQT----LEGHGSSVLSVAFSADGQRVASGSDDKTIKI----WDTASGT 874

Query: 219  FTHSMRG---AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH 275
             T ++ G   +V ++AFS D +  +ASG+    I IW+         + E H   + S+ 
Sbjct: 875  GTQTLEGHGGSVWSVAFSPD-RERVASGSDDKTIKIWDAASGTCTQTL-EGHGGRVQSVA 932

Query: 276  FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
            F  +   + S S D++IK+W  D   G     +   GH +  L + F  +G+ + S   D
Sbjct: 933  FSPDGQRVASGSDDHTIKIW--DAASG--TCTQTLEGHGSSVLSVAFSPDGQRVASGSGD 988

Query: 336  RAFRLFSVIQDQQSREL-----SQRHVAKRARKLKM----KEEELKLKPVIAFDCAEIRE 386
            +  +++       ++ L     S   VA      ++     ++ +K+    +  C +  E
Sbjct: 989  KTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE 1048

Query: 387  --RDWCNVVTCHMDTAQA------YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
                W   V    D  +       +  ++ + V G    +    +  +V +   S  G  
Sbjct: 1049 GHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGT-CTQTLEGHGDSVWSVAFSPDGQR 1107

Query: 439  AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498
               G+  G I+ ++  SG           ++   H G V  VA       + S    G I
Sbjct: 1108 VASGSIDGTIKIWDAASG--------TCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTI 1159

Query: 499  KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL-LATVADDLVIRLFDVVALRMVRKFEGHT 557
            K+WD          E     V+ V    +G  +A+ + D  I+++D  +    +  EGH 
Sbjct: 1160 KIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 558  DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL 606
              +    FS DG+ + S   D +++IWD         ++V  + T LS 
Sbjct: 1220 GWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSF 1268

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/452 (20%), Positives = 185/452 (40%), Gaps = 42/452 (9%)

Query: 157  GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL 216
            GS + +++LW+IS+   LY  +G  S + S V SP   ++A G  D  + + ++     L
Sbjct: 1050 GSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCL 1109

Query: 217  VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276
             T        V  L FS +G  L A+G+S  ++ +W++  ++    + + H N + ++ F
Sbjct: 1110 YTL-QGYTSWVRFLVFSPNGVTL-ANGSSDQIVRLWDISSKKCLYTL-QGHTNWVNAVAF 1166

Query: 277  FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336
              +   L S S D ++++W   ++    + L    GH++    + F  +G  + S   D+
Sbjct: 1167 SPDGATLASGSGDQTVRLWDISSS----KCLYILQGHTSWVNSVVFNPDGSTLASGSSDQ 1222

Query: 337  AFRLFSVIQDQQSRELSQRHVA----------KRARKLKMKEEELKLKPVIAFDCAEIRE 386
              RL+  I   +     Q H +                   ++ ++L  + +  C    +
Sbjct: 1223 TVRLWE-INSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ 1281

Query: 387  --RDWCNVVTCHMDTAQ---------AYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435
               +W N V  + D +            +W + +       L     + + V + T S  
Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISS----SKCLHTFQGHTSWVSSVTFSPD 1337

Query: 436  GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495
            G     G+    +  +++ SG    ++L         H   V  V       ++ S    
Sbjct: 1338 GTMLASGSDDQTVRLWSISSGECLYTFL--------GHTNWVGSVIFSPDGAILASGSGD 1389

Query: 496  GDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554
              +++W    G+ L +       +  IV+     LLA+ +DD  +RL+++ +   +    
Sbjct: 1390 QTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLH 1449

Query: 555  GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH + +    FS DG  L S   D ++++WDV
Sbjct: 1450 GHINSVRSVAFSSDGLILASGSDDETIKLWDV 1481

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 137/560 (24%), Positives = 220/560 (39%), Gaps = 114/560 (20%)

Query: 103  GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQE 160
            G+ +L+   DG   +W  +G E  L   GH     + +F+P            ++  S +
Sbjct: 1149 GQILLTASRDGTARLWDLEGREIGLCQ-GHTSWVRNAQFSPDG--------QWIVTCSAD 1199

Query: 161  GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
            G+ +LW++S++      KG  + +++ + SP    +    SDG   V + R+ + L T  
Sbjct: 1200 GTARLWDLSSQC-FAVLKGHQNWVNNALWSPDGQHIITSSSDGTARVWS-RHGKCLGTLR 1257

Query: 221  ---HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277
               H++ GA     FS DGQ ++ + ++     +W  E   L   I   H   +    F 
Sbjct: 1258 GHDHNIHGA----RFSLDGQKIV-TYSTDNTARLWTKEGTLL--TILRGHQKEVYDADFS 1310

Query: 278  ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            A+   + + SAD + + W  D +  D   L   +GHS       F   G  +L+  +D+ 
Sbjct: 1311 ADGRFVFTVSADQTARQW--DISQKDTITL---TGHSHWVRNAHFNPKGDRLLTVSRDKT 1365

Query: 338  FRLFS-------VIQDQQS--RELS-----QRHVAKRARKLKMKEEEL--KLKPVIAFDC 381
             RL++       V+ D Q   RE       Q  V   A K       L  KL  +     
Sbjct: 1366 ARLWTTEGECVAVLADHQGWVREGQFSPDGQWIVTGSADKTAQLWNVLGKKLTVLRGHQD 1425

Query: 382  AEIRER---DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
            A +  R   D   +VT   D   A VW      L   +LR   +N   + A   SA G F
Sbjct: 1426 AVLNVRFSPDSQYIVTASKD-GTARVWNNTGRELA--VLRHYEKN---IFAAEFSADGQF 1479

Query: 439  AVLG----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494
             V      TAG W E    + GI RG            H G V      + +  +++A  
Sbjct: 1480 IVTASDDNTAGIW-EIVGREVGICRG------------HEGPVYFAQFSADSRYILTASV 1526

Query: 495  HGDIKVWDFKGRDL-----------KSR-------------------WEVGCSLVKIVYH 524
                ++WDF GR L           ++R                   W+     V ++Y 
Sbjct: 1527 DNTARIWDFLGRPLLTLAGHQSIVYQARFSPEGNLIATVSADHTARLWDRSGKTVAVLYG 1586

Query: 525  RVNGLLATV------------ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572
               GL+ TV            ++D   RL+D+   R +   EGH + +    FS DG+W+
Sbjct: 1587 H-QGLVGTVDWSPDGQMLVTASNDGTARLWDLSG-RELLTLEGHGNWVRSAEFSPDGRWV 1644

Query: 573  LSSGMDGSLRIWDVILARQI 592
            L+S  DG+ ++W V    Q+
Sbjct: 1645 LTSSADGTAKLWPVKTLPQL 1664

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                S + +C  +P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  + Q+     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQ-QTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
           ++ GSQ GSL++W++   K L    G  +++ S    P  D VA G  D  I + +VR  
Sbjct: 78  IVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRK 137

Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273
             +  +    + AV  L FS DG+  LAS +    + +W+L   ++ + + E H   +  
Sbjct: 138 GCVFRYKGHTQ-AVRCLRFSPDGK-WLASASDDHSVKLWDLTAGKMMAELSE-HKGPVNI 194

Query: 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333
           + F  NE +L S SAD +++ W  +      +L+    G + P   I F ++G  I   G
Sbjct: 195 IEFHPNEYLLASGSADRTVRFWDLEKF----QLIGCTEGETIPVRAILFSSDGGCIFCGG 250

Query: 334 QDRAFRLFSVIQDQ 347
           +D A R++    DQ
Sbjct: 251 RD-ALRVYGWEPDQ 263

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	764
225440418	905	PREDICTED: uncharacterized WD repeat-con	0.935	0.790	0.849	0.0
255587831	906	WD-repeat protein, putative [Ricinus com	0.937	0.790	0.848	0.0
224087343	910	predicted protein [Populus trichocarpa]	0.937	0.786	0.829	0.0
356527435	907	PREDICTED: WD repeat-containing protein	0.935	0.788	0.820	0.0
356496224	906	PREDICTED: uncharacterized WD repeat-con	0.935	0.789	0.810	0.0
18412751	910	transducin/WD40 domain-containing protei	0.933	0.783	0.797	0.0
297813873	911	transducin family protein [Arabidopsis l	0.933	0.782	0.800	0.0
449507519	891	PREDICTED: uncharacterized WD repeat-con	0.916	0.785	0.800	0.0
449470306	891	PREDICTED: uncharacterized WD repeat-con	0.916	0.785	0.800	0.0
4325344	931	similar to beta-transducins (Pfam: PF004	0.933	0.765	0.766	0.0

>gi|225440418|ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07 isoform 1 [Vitis vinifera] gi|297740341|emb|CBI30523.3| unnamed protein product [Vitis vinifera]

 Score = 1291 bits (3342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/718 (84%), Positives = 671/718 (93%), Gaps = 3/718 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKA+ IYNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAAYGN IAV KRAHQVATWSRH+AKVNLLLLFGE ILSID+ GNMF+WAF
Sbjct: 61  ALASYRDYTFAAYGNDIAVFKRAHQVATWSRHNAKVNLLLLFGEQILSIDVGGNMFMWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI++NLAP+GHV L+DKF+P+CIMHPDTYLNKVI+GS+EGSLQLWNISTK+KLYEFKGW
Sbjct: 121 KGIQQNLAPIGHVMLEDKFSPSCIMHPDTYLNKVILGSEEGSLQLWNISTKQKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SSI  CVSSPALDVVAVGC+DG IH+HN+RYDEE+VTF+HS RGAVTAL+FS+DG+PL+
Sbjct: 181 KSSICCCVSSPALDVVAVGCADGTIHIHNIRYDEEIVTFSHSTRGAVTALSFSTDGRPLV 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++IISLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI FYANGRH+LSAGQDRAFRLFSVIQDQQSRELSQRHV KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSVIQDQQSRELSQRHVTKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEE+KLKPVIAFD AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRVKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN + VKAC ISACGNFAVLGTAGGWIERFNLQSGISRGSY+D+SER + AH+GEVVGV
Sbjct: 421 PENQSPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYVDLSERRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFKGR+LKSRWE+GC++VKIVYHR NGLLAT  DDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVYHRSNGLLATATDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGH DR+TD CFSEDGKWLL+S MDG+LRIWDVILARQIDAIHVDVS
Sbjct: 541 LFDVVALRMVRKFEGHIDRVTDLCFSEDGKWLLTSSMDGTLRIWDVILARQIDAIHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           +TALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+VSVK+PSVSS EG
Sbjct: 601 VTALSLSPNMDVLATTHVDQNGVYLWVNQTMFSGSSNIDSYASGKEVVSVKLPSVSSTEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
              ++S +PD++      +D F  P F ++IPDLVTLSLLPKSQWQSLINLDIIK ++
Sbjct: 661 SH-KDSEKPDLNHLQF--RDDFQNPHFHEKIPDLVTLSLLPKSQWQSLINLDIIKIRN 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587831|ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communis] gi|223525346|gb|EEF27972.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/718 (84%), Positives = 671/718 (93%), Gaps = 2/718 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLV PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRD+TFAAY NHIAV KR+ QVATWSRHSAKVNLLLLFG+HI+S+D++GNMFIW F
Sbjct: 61  ALASYRDFTFAAYANHIAVFKRSQQVATWSRHSAKVNLLLLFGDHIISVDVNGNMFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE NLAP+GH+ LD+ FTPTC+MHPDTYLNKV+VGSQEG+LQLWNISTKKKLYEFKGW
Sbjct: 121 KGIENNLAPIGHIMLDNNFTPTCLMHPDTYLNKVVVGSQEGTLQLWNISTKKKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S I+SCVSSPALDV+AVGC+DGKIHVHN++ D+ELVTF+HS RGAVTAL FS+DGQPLL
Sbjct: 181 NSGITSCVSSPALDVIAVGCADGKIHVHNIQCDDELVTFSHSTRGAVTALCFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG+SSGVISIWNLEKRRLQ+VIREAHDN+IISLHFFANEPVLMS SADNSIKMWIFDTT
Sbjct: 241 ASGSSSGVISIWNLEKRRLQTVIREAHDNSIISLHFFANEPVLMSGSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP CIRFYANGRHILSAGQDRAFRLFS+IQDQQSRELSQRH++KR
Sbjct: 301 DGDPRLLRFRSGHSAPPHCIRFYANGRHILSAGQDRAFRLFSIIQDQQSRELSQRHISKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC
Sbjct: 361 AKKLRLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKACTISACGNFAV+GTAGGWIERFNLQSGISRGSY+D+SE+S+ AH GEVVGV
Sbjct: 421 PENPTPVKACTISACGNFAVIGTAGGWIERFNLQSGISRGSYVDVSEKSSCAHEGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFKG +LKSRWEVGCSLV+IVYHR+NGLLATVADDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDVKVWDFKGLELKSRWEVGCSLVQIVYHRLNGLLATVADDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGHTDR+TD CFSEDGKWLLSS MDG+LRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLS N+D+LAT HVDQNGVYLWVN+ MFSG S++DSYASGKE+VSVKMPSVSSVEG
Sbjct: 601 ITALSLSQNLDILATTHVDQNGVYLWVNQSMFSGVSSVDSYASGKEVVSVKMPSVSSVEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
            + ++S +P +  T      +  LP F QQ+P+LVTLSLLP+SQWQ LINLDIIK ++
Sbjct: 661 SEAQDSDKPTMQPTQY--DGASHLPVFNQQMPELVTLSLLPRSQWQGLINLDIIKVRN 716

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087343|ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|222854105|gb|EEE91652.1| predicted protein [Populus trichocarpa]

 Score = 1273 bits (3295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/720 (82%), Positives = 662/720 (91%), Gaps = 4/720 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+ VPFSVQRLGTE FVTVSVGKAF +YNCAKL LV+V PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVIVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALA YRD+TF AY  HIAV KRAHQV  WSRHSAKVN L++FG++++S+D+DGN+FIW F
Sbjct: 61  ALACYRDFTFVAYATHIAVFKRAHQVTLWSRHSAKVNSLMVFGDYVISVDVDGNLFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KG++E+  PVGH+   DKFTPTC+MHPDTYLNKV++GSQEG LQLWN+STKK LYEFKGW
Sbjct: 121 KGLDESNVPVGHILFGDKFTPTCMMHPDTYLNKVLIGSQEGGLQLWNVSTKKMLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVAVGC DGKIHVHN+RYDEE+VTF HSMRGAVT+L+FS+DGQPLL
Sbjct: 181 GSSVTSCVSSPALDVVAVGCVDGKIHVHNIRYDEEVVTFVHSMRGAVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKR+LQSV+REAHD++IISLHF ANEPVLMS+SADNSIK+WIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKIWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV+GEHILRPC
Sbjct: 361 AKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVIGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN T VKACTISACGNFA+LGTAGGWIERFNLQSGISRGSY+D+SER + AH  EVVGV
Sbjct: 421 PENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSYMDVSERGSCAHESEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT MISAGYHGD+KVWDFKGR LKSRWEVGCSLVKIVYHR+NGLLATVADD VIR
Sbjct: 481 ACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIVYHRLNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD VALRMVRKFEGH DRITD CFSEDGKWLLSS MDG+LRIWDVILARQIDA+HVDVS
Sbjct: 541 LFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+V+VK+PS+SSVEG
Sbjct: 601 ITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYASGKEVVNVKLPSLSSVEG 660

Query: 661 --CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
              ++E++ +P V+++  V  +    P F QQIPDLVTLSLLPKSQWQSLINLDIIK ++
Sbjct: 661 SNVENEDTEKPIVNQS--VSNEVSTFPAFSQQIPDLVTLSLLPKSQWQSLINLDIIKVRN 718

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527435|ref|XP_003532316.1| PREDICTED: WD repeat-containing protein 36-like [Glycine max]

 Score = 1254 bits (3244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/718 (82%), Positives = 656/718 (91%), Gaps = 3/718 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF ++NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQVFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQVATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQVATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+ENL P GH+ LD+KF+P+CIMHPDTYLNKV+VGS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENLFPFGHIMLDEKFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VTAL+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI+FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  N AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYIDISESRNCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVW+FK RDLK+RW+V CS+VKIVYHR NGLLATVADDL I+
Sbjct: 481 ACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVYHRYNGLLATVADDLTIQ 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LATAHVDQ+G+YLWVN+ MFS  SN+DSYASGKE+VSVK+PS+SS E 
Sbjct: 601 ITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYASGKEVVSVKLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
            +DE+  +P        PKD+    T  +QIP+LVTLSLLPKSQW +LINLDIIK ++
Sbjct: 661 SRDEHYDEP---MNASQPKDALYFSTQDKQIPELVTLSLLPKSQWLNLINLDIIKVRN 715

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496224|ref|XP_003516969.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Glycine max]

 Score = 1241 bits (3212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/718 (81%), Positives = 654/718 (91%), Gaps = 3/718 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF I+NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQIFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQ ATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQFATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+EN  P GH+ LD+KF+P+CIMHPDTYLNKV++GS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENHVPFGHIMLDEKFSPSCIMHPDTYLNKVLIGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VT+L+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNS+KMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSVKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP C++FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQ HV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPFCLKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQWHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           ARKLK+KEEE+KLKP+IAFDCAEIRERDWCNVVTCHMDTAQAY+WRLQNFVLGEHIL PC
Sbjct: 361 ARKLKLKEEEIKLKPMIAFDCAEIRERDWCNVVTCHMDTAQAYLWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  + AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGICRGAYIDISESRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVWDFK RDLK++W+VGCS+VKIVYHR NGLLATVADDL IR
Sbjct: 481 ACDSTNTLMISAGYEGDIKVWDFKERDLKTKWDVGCSVVKIVYHRYNGLLATVADDLTIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAI VD S
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIQVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LAT HVDQNG+YLWVN+ MFS  SN+DS ASGKE+VSV +PS+SS E 
Sbjct: 601 ITALSLSPNMDILATTHVDQNGIYLWVNQAMFSSTSNVDSCASGKEVVSVTLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
            +DE+  +P V+ +   PKD+   PT  +QIP+LVTLSLLPKSQWQ+LINLDIIK ++
Sbjct: 661 SRDEHYDEP-VNASQ--PKDALHFPTQDKQIPELVTLSLLPKSQWQNLINLDIIKVRN 715

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412751|ref|NP_567275.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|16604679|gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|20465603|gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|332657045|gb|AEE82445.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/716 (79%), Positives = 661/716 (92%), Gaps = 3/716 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct: 121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIK 715
            + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIK
Sbjct: 661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIK 714

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813873|ref|XP_002874820.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320657|gb|EFH51079.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/717 (80%), Positives = 661/717 (92%), Gaps = 4/717 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAA+GN IAV KRAHQVATWS+H AKV+LLLLFGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFAAFGNEIAVFKRAHQVATWSKHVAKVDLLLLFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+L+P+G+++L  KFTP+ I+HPDTYLNKV+VGSQEG LQLWNI+TKK +YEFKGW
Sbjct: 121 KGIEEHLSPIGNLQLTGKFTPSSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMIYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS+SSCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVSSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++K+EELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKDEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFK R+LKS+W++GCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKKRELKSQWDIGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVVAL+MVR+F GHTDR+TD CFSEDGKWLLSS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVALKMVREFRGHTDRVTDLCFSEDGKWLLSSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIK 715
            +  D++  +  +  +  +   SF +    +QIP+LVTLSLLPKSQWQSLINLDIIK
Sbjct: 661 SEADDDDMERQVLENSGALQASSFSIS--HKQIPELVTLSLLPKSQWQSLINLDIIK 715

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507519|ref|XP_004163055.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/718 (80%), Positives = 635/718 (88%), Gaps = 18/718 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK ++
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRN 700

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470306|ref|XP_004152858.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/718 (80%), Positives = 635/718 (88%), Gaps = 18/718 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQH 718
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK ++
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRN 700

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4325344|gb|AAD17343.1| similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] gi|7267253|emb|CAB81036.1| putative WD-repeat membrane protein [Arabidopsis thaliana]

 Score = 1202 bits (3111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/737 (76%), Positives = 655/737 (88%), Gaps = 24/737 (3%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKK-- 58
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++         
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISKFFLLLKP 60

Query: 59  -----IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDG 113
                IRALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++G
Sbjct: 61  KLPKKIRALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEG 120

Query: 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173
           NMFIWAFKGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK 
Sbjct: 121 NMFIWAFKGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKM 180

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233
           LY+FKGWGSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS
Sbjct: 181 LYQFKGWGSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFS 240

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
           +DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+K
Sbjct: 241 TDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLK 300

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           MWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELS
Sbjct: 301 MWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELS 360

Query: 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413
           QRH+++RA+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLG
Sbjct: 361 QRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLG 420

Query: 414 EHILRPCPENPTAVK--------------ACTISACGNFAVLGTAGGWIERFNLQSGISR 459
           EHIL+PCPENPT +K              AC ISACGNFAV+GTAGGWIERFNLQSGISR
Sbjct: 421 EHILKPCPENPTPIKGVFVSRNHLLLAILACAISACGNFAVVGTAGGWIERFNLQSGISR 480

Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 519
           GSY DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLV
Sbjct: 481 GSYFDMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLV 540

Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
           KIVYHRVNGLLATVADD VIRL+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDG
Sbjct: 541 KIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDG 600

Query: 580 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 639
           SLRIWDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++
Sbjct: 601 SLRIWDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVE 660

Query: 640 SYASGKEIVSVKMPSVSSVEGCQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLS 698
           SYASGK++V+VK+PSVS++   + D++  +  +  ++ +   SF +   ++QIP+LVTLS
Sbjct: 661 SYASGKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLS 718

Query: 699 LLPKSQWQSLINLDIIK 715
           LLPKSQWQSLINLDIIK
Sbjct: 719 LLPKSQWQSLINLDIIK 735

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	764
TAIR|locus:2135393	910	AT4G04940 "AT4G04940" [Arabido	0.933	0.783	0.773	3.90000000001e-314
UNIPROTKB|G3X6I6	948	WDR36 "Uncharacterized protein	0.905	0.729	0.385	3.9e-131
UNIPROTKB|F1RLI4	952	WDR36 "Uncharacterized protein	0.907	0.727	0.376	4.8e-131
UNIPROTKB|F1NKR5	890	WDR36 "Uncharacterized protein	0.904	0.776	0.379	1.5e-129
UNIPROTKB|Q8NI36	951	WDR36 "WD repeat-containing pr	0.905	0.727	0.369	3.6e-128
UNIPROTKB|F1PNT8	891	WDR36 "Uncharacterized protein	0.905	0.776	0.373	5.9e-128
RGD|1586463	882	Wdr36 "WD repeat domain 36" [R	0.905	0.784	0.371	1.3e-125
ZFIN|ZDB-GENE-030131-464	904	wdr36 "WD repeat domain 36" [D	0.910	0.769	0.369	4.9e-124
POMBASE|SPCC1672.07	902	SPCC1672.07 "U3 snoRNP-associa	0.909	0.770	0.358	9.2e-123
FB|FBgn0038146	922	CG9799 [Drosophila melanogaste	0.910	0.754	0.330	2.2e-103

TAIR|locus:2135393 AT4G04940 "AT4G04940" [Arabidopsis thaliana (taxid:3702)]

 Score = 3013 (1065.7 bits), Expect = 3.9e-314, P = 3.9e-314
 Identities = 554/716 (77%), Positives = 640/716 (89%)

Query:     1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct:     1 MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
             ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct:    61 ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query:   121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
             KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct:   121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query:   181 GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
             G         PALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct:   181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query:   241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct:   241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query:   301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
             DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct:   301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query:   361 ARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
             A+            PV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct:   361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query:   421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
             PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct:   421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query:   481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
             ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct:   481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query:   541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
             L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct:   541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query:   601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
             ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct:   601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query:   661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIK 715
              + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIK
Sbjct:   661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIK 714

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|G3X6I6 WDR36 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 280/726 (38%), Positives = 418/726 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S +P +V+   L    +VT  VGK+FH Y+  KL+LV V   LP+ I 
Sbjct:    65 LFAGFRALGLFSSDIPHAVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSLPQDIC 124

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   125 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 184

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   185 IYSEEEYL----QLPFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 240

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF-SSDGQ 237
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F ++DG 
Sbjct:   241 GWKVGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTADGH 299

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct:   300 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 359

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D   G+ RLLRFR GHSAP   IR+Y  NG+HILSA QD   + FS + ++ ++ L    
Sbjct:   360 DGPAGEGRLLRFRMGHSAPLTRIRYYGQNGQHILSASQDGTLQSFSTVHEKFNKSLGHGL 419

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
             + K+   R            PV  F   E RE DW  +V CH        W  Q   +G 
Sbjct:   420 INKKRVKRKGLQNTMSVRLPPVTEFAAEEARESDWDGIVACHQGKLSCSTWNYQRSTIGA 479

Query:   415 HILRPC--PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
             H LRP     + T   A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct:   480 HFLRPAGLKTDSTTATAVDITSCGNFAVIGLSSGAVDVYNMQSGIHRGSF-----GRDQA 534

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D  N L I+AG  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct:   535 HKGSVRGVAVDGLNQLTITAGSEGVLKFWNFKNKVLIHSVSLDSSPNLMLLHRDSGILGL 594

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   595 ALDDFSISVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISASMDCSIRTWDLPSGCLI 654

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  GVYLW N  ++S         S + + +  +
Sbjct:   655 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGVYLWSNISLYS-------VVSLRPLPTDYV 707

Query:   653 PSVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
             PSV  + G CQ  D   S+  V  ++ + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct:   708 PSVVMLPGTCQTQDVELSEETVEPSEEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 763

Query:   710 NLDIIK 715
             NLD+IK
Sbjct:   764 NLDVIK 769

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1RLI4 WDR36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1263 (449.7 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
 Identities = 273/725 (37%), Positives = 413/725 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    FVT  VGK+ H Y+  KL+LV V   LP+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFFVTTCVGKSLHTYDVQKLSLVAVSNSLPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLSFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   245 GWKTGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNAMTVRLPPITEFAAEEARESDWDGIIACHQGKLSCSTWNYQRSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G I+ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTIDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLAT 532
              G + GVA D  N L ISAG  G +K W+FK + L     +  S   ++ HR  +G+L  
Sbjct:   539 KGSIRGVAVDGLNQLTISAGSEGLLKFWNFKNKILIHSVSLDSSPNMMLLHRDSSGILGL 598

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   599 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISASMDCSIRTWDLPSGCLI 658

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +
Sbjct:   659 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYV 711

Query:   653 PSVSSVEG-CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD-LVTLSLLPKSQWQSLIN 710
             PSV  + G CQ ++    +   T+  P D        +Q+ + LVTLSLLP+S+W++L+N
Sbjct:   712 PSVVMLPGTCQTQDIELSE-ETTE--PSDEMIAYDSPEQLNEQLVTLSLLPESRWKNLLN 768

Query:   711 LDIIK 715
             LD+IK
Sbjct:   769 LDVIK 773

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1NKR5 WDR36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 276/727 (37%), Positives = 417/727 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGT--ENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S VP  ++  G   E +V  +VG++ H YN  KL +V V   L + I 
Sbjct:     8 LFAGFRALGRYSSHVPHVLRYHGRPREFYVATAVGRSVHTYNVKKLGIVAVSNALLQDIT 67

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              LA+ R   FA+YGN    + R  +V  T+  H A+++LL  FG+HI+S+D+   + +W 
Sbjct:    68 CLAADRMLIFASYGNVFHAIARNKEVVHTYEGHKARIHLLQPFGDHIISVDVANVLIVWD 127

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
              +  EE L     V  D   F  + I+HP TYLNK+++GS++G LQLWNI + K LY F 
Sbjct:   128 IQSEEEYL----QVVFDKATFAVSAILHPSTYLNKILLGSEQGGLQLWNIRSNKLLYSFP 183

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GWG         PA+DV+AVG   G I +HN+++DE L+ F     G +TA++F +DG P
Sbjct:   184 GWGLGVTTLAQAPAVDVIAVGLVSGHIIIHNIKFDETLMKFQQDW-GPITAISFRTDGHP 242

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I++W+LE+++L S +R AH  A+  + F   EP+L++  ADN+I++WIFD
Sbjct:   243 VMAAGSPVGHIALWDLEEKKLMSQMRNAHSTAVAGMSFVPGEPLLITNGADNAIRVWIFD 302

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G  R+LR R GHSAPP  IR++  NG  ILSAGQD   + FS + ++ ++ L +  +
Sbjct:   303 GPGGTGRVLRSRMGHSAPPTKIRYHGQNGEQILSAGQDGTLQSFSTVHERFNKSLGRGSI 362

Query:   358 -AKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
               K+++            P+ AF      + DW  ++ CH        W  Q   +G H 
Sbjct:   363 NKKKSKKKGLQHDTMALPPITAFASEVAHQNDWDGIIACHQGYITCTTWNYQKTSMGAHK 422

Query:   417 LRP---CPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             LRP       P  + A    I+ CGNFAV+G + G ++ +N+QSGI RG Y    E+   
Sbjct:   423 LRPEEFSKNKPIDIYATAVDITTCGNFAVIGMSTGQVDVYNMQSGIHRGRY--GREK--- 477

Query:   472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
             AH G + GVA D  N L I+AG  G IK W FK +DL    ++  S   I+ HR +G+L 
Sbjct:   478 AHEGSIRGVAVDGLNQLTITAGSDGLIKFWKFKAKDLVHSTDLSSSPSGILLHRDSGILG 537

Query:   532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
                DD  I + D+   ++VRKF GH  RI D  FS DG+WL++S MD +++ WD+     
Sbjct:   538 IAFDDFSISVLDIETWKIVRKFSGHHGRINDMTFSPDGRWLITSSMDCTIKTWDLPSGCL 597

Query:   592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVK 651
             ID   +D +  +L++SP  D LA+AHVD  G+YLW NR ++S         S + + +  
Sbjct:   598 IDCFLLDSAAVSLTMSPTGDFLASAHVDDLGIYLWSNRSIYS-------LVSLRPLPADY 650

Query:   652 MPSVSSVEG-C--QDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSL 708
              PSV ++ G C  QD + ++ +    + +  DS   P  +Q    LVTLSLLP+S+W++L
Sbjct:   651 EPSVITLPGTCPLQDVDVAEGEDKCDEMIEYDS---P--EQLGEQLVTLSLLPESRWKNL 705

Query:   709 INLDIIK 715
             ++LD+IK
Sbjct:   706 LSLDVIK 712

GO:0003824 "catalytic activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q8NI36 WDR36 "WD repeat-containing protein 36" [Homo sapiens (taxid:9606)]

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 268/725 (36%), Positives = 413/725 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFP 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG P
Sbjct:   245 GWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   539 KGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGLA 598

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   599 LDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLID 658

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +S+SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   659 CFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPADYVP 711

Query:   654 SVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             S+  + G CQ  D   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   712 SIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 767

Query:   711 LDIIK 715
             LD+IK
Sbjct:   768 LDVIK 772

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PNT8 WDR36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 271/725 (37%), Positives = 417/725 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ V   ++   L    FVT    K+FH Y+  KL+LV V   LP+ I 
Sbjct:     9 LFAGFRALGLFSTDVAHVLRFSALKPRFFVTTCGAKSFHTYDVQKLSLVAVSNSLPQDIC 68

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A++ LL  FG+H++S+D D  + IW 
Sbjct:    69 CMAADGRLVFAAYGNVFSAFARNKEVVHTYKGHKAEIRLLQPFGDHVISVDTDSVLIIWH 128

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++G+LQLWNI + K LY F+
Sbjct:   129 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGTLQLWNIKSNKLLYTFQ 184

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG + G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   185 GWKFGVTALQQAPAVDVVAVGLTSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 243

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   244 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 303

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   304 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 363

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW +++ CH        W  Q   +G +
Sbjct:   364 NKKKVKRKGLQNAMSVRLPPITKFAAEEARESDWDSIIACHQGKLSCSTWNYQRSTIGAY 423

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+ +     + AH
Sbjct:   424 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSFGE-----DQAH 478

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L+I+AG  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   479 KGSVRGVAVDGLNQLIITAGSEGLLKFWNFKNKILIHSMSLSSSPNMMLLHRDSGILGLA 538

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   539 LDDFSICVLDIETRKIVREFSGHQGQINDLAFSPDGRWLISASMDCSVRTWDLPSGCLID 598

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
             +  VD +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   599 SFLVDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYVP 651

Query:   654 SVSSVEG-CQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
              V  + G CQ+E+   S+  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   652 LVVMLPGTCQNEDVEFSEETIEPSDEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 707

Query:   711 LDIIK 715
             LD+IK
Sbjct:   708 LDVIK 712

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|1586463 Wdr36 "WD repeat domain 36" [Rattus norvegicus (taxid:10116)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 269/725 (37%), Positives = 411/725 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    15 LFAGFRALGLFSNDIPHVVRYNALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 74

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:    75 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 134

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNKV++GS++GSLQLWNI + K LY F 
Sbjct:   135 IYSEEEYL----QLTFDKSVFKISTILHPSTYLNKVLLGSEQGSLQLWNIKSNKLLYTFP 190

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN+++DE L+ F H   G +T+++F +DG P
Sbjct:   191 GWKVGVTALQQAPAVDVVAIGLVSGQVVIHNIKFDETLMKF-HQDWGPITSISFRTDGHP 249

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   250 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAISGLTFLHREPLLVTNGADNALRIWIFD 309

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLR R GHSA    IR+Y  NG+ ILSA QD   + FS + ++ ++ L    V
Sbjct:   310 GPTGEGRLLRLRMGHSASLTKIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLV 369

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E R+ DW  V+ CH        W  Q   +G +
Sbjct:   370 NKKIVKRKGLQNTMSVRLPPITQFAAEEARQSDWDGVIACHQGKLSCSTWNYQRSTIGAY 429

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P     N     A  I++CGNFA++G + G ++ +N+QSGI RGS+ D  E+   AH
Sbjct:   430 FLKPKNVKANSATATAVDITSCGNFAIIGLSSGAVDVYNMQSGIHRGSFGD--EK---AH 484

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L I+AG    +K W+FK + L     +      ++ HR +G+L   
Sbjct:   485 AGSVRGVAVDGLNQLAITAGSERLLKFWNFKSKVLVHSLSLDSPPNVMLLHRDSGILGLA 544

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   545 LDDFSITVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISAAMDCSVRTWDLPSGCLID 604

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + +    +P
Sbjct:   605 CFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPPDYVP 657

Query:   654 SVSSVEG-CQDEN--SSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             SV  + G CQ +   + +  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   658 SVLMLPGTCQTQGLEALEEQIEPSDEMIE--YESP--EQLNEQLVTLSLLPESRWKNLLN 713

Query:   711 LDIIK 715
             LD+IK
Sbjct:   714 LDVIK 718

GO:0001895 "retina homeostasis" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030516 "regulation of axon extension" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

ZFIN|ZDB-GENE-030131-464 wdr36 "WD repeat domain 36" [Danio rerio (taxid:7955)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 267/723 (36%), Positives = 403/723 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             IF  ++A+G  ++ +   V+  +   E +V  +VG+ FH YN  KL +V V   LP+ I 
Sbjct:    21 IFSGFRALGLYSNHLAHVVRFHKKHREFYVVTAVGQCFHTYNVKKLGIVAVSNALPEDIS 80

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
             ++ +     +AAYG  I+   R+ +V  T++ H A V+LLL FG H++S+D D  + IW 
Sbjct:    81 SVTADCMLVYAAYGKLISAFARSREVVHTYTGHQADVHLLLPFGNHLISVDKDNVVIIWD 140

Query:   120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG 179
              +  E+    + + K    F  + +MHP TYLNK++ GS +GSLQLWNI + K L+ F G
Sbjct:   141 VES-EDTYLQISYDKAS--FEVSALMHPSTYLNKILFGSSQGSLQLWNIKSNKLLFTFSG 197

Query:   180 WGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239
             W          PA+DVV VG + G+I +HN+++DE L+ F     G +TAL+F +DG P+
Sbjct:   198 WSAAVTVLQQTPAVDVVGVGLASGQIIIHNIKFDETLMKFQQDW-GPITALSFRTDGHPI 256

Query:   240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299
             +ASG+  G I +W+LE+++L S +R+AH  AI  L F  NEP+L++  ADN+I++WIFD 
Sbjct:   257 MASGSPIGHIGLWDLEEKKLVSQMRDAHTTAIAGLTFLQNEPLLITNGADNAIRVWIFDV 316

Query:   300 TDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
               GD RLLR R GHSAPP  IR Y  +G +ILSAGQD   + FS + ++ ++ L    + 
Sbjct:   317 AGGDGRLLRQRMGHSAPPTKIRHYDQSGLNILSAGQDGTLQSFSTVHERFNKSLGHGTLN 376

Query:   359 K-RARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417
             K +A+             +  F     R+ DW  ++ CH        W  Q   +G H L
Sbjct:   377 KAKAKKKGVKYDTAKLPSITTFASETARQSDWDGIIACHRGFLMTTSWNYQKGSMGAHKL 436

Query:   418 RPCPENPTA-----VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
              P   N          A  IS+CGNFAV+  + G I+ +N+QSG+ RG Y +     + A
Sbjct:   437 EPERFNRNRSLNVHATAVDISSCGNFAVIALSSGHIDVYNMQSGLHRGHYGE-----DKA 491

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D+ N L  S G    +K+W FK ++      +  +    + HR +G+LA 
Sbjct:   492 HEGPVRGVAVDALNQLTFSVGADHLLKIWKFKSKEHLHTHRLPAAPASSLLHRDSGMLAI 551

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               D   I + DV   R+VRKF GH  +I D  FS DG+WL+++ MD ++R WD+     +
Sbjct:   552 ALDVFAIHILDVETRRIVRKFSGHRGQINDMTFSPDGRWLITASMDCTIRTWDLPSGSLV 611

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D   V+ +  ++SLSP  + LA++HVD  GVYLW N  + S  S +    +  E   + +
Sbjct:   612 DCFLVEAAAVSVSLSPTGNFLASSHVDGLGVYLWSNNTLCSLVS-LRPLPADYEPTVIML 670

Query:   653 PSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLD 712
             P +     C  +++ + +V  +D      +  P   Q    LVTLSLLP S+W++L++LD
Sbjct:   671 PGI-----CPSKDTEEEEVLDSDSSEMAEYISPA--QLDEHLVTLSLLPDSRWKNLLHLD 723

Query:   713 IIK 715
             IIK
Sbjct:   724 IIK 726

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

POMBASE|SPCC1672.07 SPCC1672.07 "U3 snoRNP-associated protein Utp21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 259/722 (35%), Positives = 407/722 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
             I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct:    23 IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query:    63 ASYRDYTFAAYGNHIAVVKRAHQVATWS----RHSAKVNLLLLFGEHILSIDIDGNMFIW 118
              S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct:    83 KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query:   119 AFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
               K   +   P  H     +     T ++HP TYLNK+++G  +G+LQ+WN+   K+++E
Sbjct:   141 --KHASKYSVPELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSKRVHE 198

Query:   177 FKGW-GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235
             F+ + G         P LDV+AVG   G+I + N++    L+ F     G V + +F +D
Sbjct:   199 FQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCSFRTD 256

Query:   236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             G P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS+K W
Sbjct:   257 GTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNSLKEW 316

Query:   296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQ 354
             IFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS ELSQ
Sbjct:   317 IFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQSTELSQ 376

Query:   355 RHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
               V  +A+             + A   +  RE+ W NV+T H + + A  W  ++  LG+
Sbjct:   377 GSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQ 436

Query:   415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474
             H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S  S     
Sbjct:   437 HVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSF-GQSSLSGKP-- 491

Query:   475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA 534
               V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+A   
Sbjct:   492 --VTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLVAVAC 549

Query:   535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA 594
             DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+     ID+
Sbjct:   550 DDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDS 609

Query:   595 IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASG-KEIVSVKMP 653
             I      T+L+ +P  D LAT HVDQ G+ LW N  MF    ++ + A    ++V V  P
Sbjct:   610 ISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFK---HVSTKALRLDDVVEVSAP 666

Query:   654 SVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDI 713
             SVS  +G     ++  +V  ++   ++     T  Q  P+L TLS LP++QWQ+LINL+ 
Sbjct:   667 SVSGEKGISVVEAAL-NVE-SNAEDEEDISYRTMDQLDPNLQTLSKLPRTQWQTLINLEA 724

Query:   714 IK 715
             IK
Sbjct:   725 IK 726

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=NAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

FB|FBgn0038146 CG9799 [Drosophila melanogaster (taxid:7227)]

 Score = 1004 (358.5 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
 Identities = 243/736 (33%), Positives = 389/736 (52%)

Query:     3 IFEPYKAIGYITSSVPFS---VQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
             IF   +A+GY+++ VP     VQR      +T  +G++F +Y      L+ V    P +I
Sbjct:    25 IFRRNRALGYVSNQVPAVTRYVQRRRDTLLITC-IGRSFQVYTANHFRLLHVSGLHPDEI 83

Query:    60 RALASYRDYTFAAYGNHIAVVKRA--HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFI 117
              ALA+ R +T+ A  N      RA  H    +  H   V+LLL FG  +++ID    + +
Sbjct:    84 TALATDRLHTYTA-SNKCIYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKV 142

Query:   118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
             W     E+    V      ++F  T + HP TY+NK+++GSQ+G L++ NI     +   
Sbjct:   143 WNIS-TEDVYLEVPF--RSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTL 199

Query:   178 KGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
                          PALDVVAVG  DG I + N+++DE L++F     G VT L+F +DG 
Sbjct:   200 SHHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDW-GQVTNLSFRTDGP 258

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P+L S  S+G ++ WNLE+R+L   + +AH+ ++ +     +EPV+ + S DNS++M++F
Sbjct:   259 PILVSACSNGYMAFWNLEERKLAGQL-QAHEESVTTAICLPSEPVVFTTSPDNSMRMFVF 317

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D  DG  R LR R GH+ PP CIR++ ++G  ILS+G+D   R+FS I +  ++ + +  
Sbjct:   318 DMPDGGARQLRIREGHTKPPFCIRYHGSSGVSILSSGEDSTMRVFSTISESLNKSMGRAT 377

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
                +A  +            P++ F     RE++W N+   H    QA  W      +GE
Sbjct:   378 YNPKATKKKNRFEHDKFGMPPILEFTSDTAREKEWDNIAAIHAGVIQATTWSFGKNRMGE 437

Query:   415 HILRPCP---ENPTAVK---ACTI-SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
             H L P      N T  +    C + + CGNF ++G + G IERFN+QSG+ R +Y     
Sbjct:   438 HRLVPKQFQNSNRTNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATY----- 492

Query:   468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS----RWEVGCSLVKIVY 523
               + AH   V G+A D+ N  +IS    G +K W FKG+  K     R   G +L+++  
Sbjct:   493 -GSPAHKMAVRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRL-- 549

Query:   524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583
             HR + +LA   +   I + D+    +VRKF GHT ++ D  FS D +WL+++ MD ++++
Sbjct:   550 HRESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLITAAMDSTIKV 609

Query:   584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NIDSY 641
             WD+  +  +D   V+    +LS+SPN D LATAHV   G+YLW N+ +F+  S  +ID  
Sbjct:   610 WDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIYLWANKTLFNQISLRSIDPL 669

Query:   642 ASGKEI-VSVKMPSVSSVE-GCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL 699
                  + +   +     +E G ++    + D  +   +    +  PT  Q   +L+TLS 
Sbjct:   670 ELAPYVGLPTNVCDAMELEDGMKELEIDEEDESKLGELVDTKYETPT--QLSEELITLSG 727

Query:   700 LPKSQWQSLINLDIIK 715
             L  S+WQ+L++L++IK
Sbjct:   728 LAASRWQNLLDLELIK 743

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.918
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.904
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.893
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.892
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.877
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•	•	0.873
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•	•		•		0.853
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.841
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.836
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•	•	0.831

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	764
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam04192	233	pfam04192, Utp21, Utp21 specific WD40 associated p	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  116 bits (293), Expect = 7e-29
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
           H   +  + F  +  +L + S D +IK+W  D   G+  LLR   GH+ P   +   A+G
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVW--DLETGE--LLRTLKGHTGPVRDVAASADG 63

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
            ++ S   D+  RL+ +   +  R L+  H                   V     A   +
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTG-H----------------TSYV--SSVAFSPD 104

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                + +   D     VW ++        L     +   V +   S  G F    +  G
Sbjct: 105 GRI--LSSSSRDK-TIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
            I+ ++L++G    +           H GEV  VA       ++S+   G IK+WD    
Sbjct: 158 TIKLWDLRTGKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Query: 507 D-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 565
             L +       +  + +     LLA+ ++D  IR++D+     V+   GHT+ +T   +
Sbjct: 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Query: 566 SEDGKWLLSSGMDGSLRIWD 585
           S DGK L S   DG++RIWD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (290), Expect = 2e-28
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 19/272 (6%)

Query: 86  VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC 143
             T   H+  V  +     G+ + +   DG + +W  +  E      GH           
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----TGPVRD 56

Query: 144 IM-HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202
           +    D     +  GS + +++LW++ T + +    G  S +SS   SP   +++    D
Sbjct: 57  VAASADG--TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 203 GKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
             I V +V   + L T   H+    V ++AFS DG   +AS +  G I +W+L   +  +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVA 171

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            +   H   + S+ F  +   L+S+S+D +IK+W  D + G  + L    GH      + 
Sbjct: 172 TL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTG--KCLGTLRGHENGVNSVA 226

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           F  +G  + S  +D   R++ +   +  + LS
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  113 bits (282), Expect = 2e-26
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 41/411 (9%)

Query: 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFTHSMRGAVTALAFSSDGQPLL 240
            SI+S   SP  +++  G SDG I + ++   E+L+ +       +V+ LA SS     +
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 241 ASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIF 297
              +SS  G + +W+L          E H  ++ SL F  +  +L S S  D +IK+W  
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRH 356
            T     + L   +GH+ P   + F  +G   I S   D   RL+ +   +  R     H
Sbjct: 186 RTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                              V +F        D   + +   D     +W L++      +
Sbjct: 242 SDS---------------VVSSFS------PDGSLLASGSSDGT-IRLWDLRS---SSSL 276

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
           LR    + ++V +   S  G     G++ G +  ++L++G         S  +   H G 
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL------SSLTLKGHEGP 330

Query: 477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 535
           V  ++     + L+      G I++WD +        E   +++ + +     ++++ + 
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           D  +RL+D+    ++R  +GHT R+T   FS DGK L S   D ++R+WD+
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.7 bits (249), Expect = 5e-23
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
           + S   D  + +W  +  +      GH      +  +    PD     V   SQ+G+++L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTF--VASSSQDGTIKL 161

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
           W++ T K +    G    ++S   SP  + +    SDG I + ++   + L T       
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHEN 220

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
            V ++AFS DG  LLASG+  G I +W+L        +   H N++ SL +  +   L S
Sbjct: 221 GVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLAS 278

Query: 286 ASADNSIKMW 295
            SAD +I++W
Sbjct: 279 GSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLA 531
           H G V  VA      L+ +    G IKVWD +  +L    +     +  +        LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
           + + D  IRL+D+     VR   GHT  ++   FS DG+ L SS  D ++++WDV   + 
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 592 IDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           +  +  H D  + +++ SP+   +A++  D   + LW
Sbjct: 128 LTTLRGHTD-WVNSVAFSPDGTFVASSSQDGT-IKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 23/232 (9%)

Query: 401 QAYVWRLQN----FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456
              VW L+       L  H           V+    SA G +   G++   I  ++L++G
Sbjct: 32  TIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKTIRLWDLETG 83

Query: 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VG 515
               +           H   V  VA      ++ S+     IKVWD +     +      
Sbjct: 84  ECVRTLT--------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
             +  + +      +A+ + D  I+L+D+   + V    GHT  +    FS DG+ LLSS
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 576 GMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 626
             DG++++WD+   + +  +   +  + +++ SP+  +LA+   D   + +W
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 98.6 bits (244), Expect = 1e-21
 Identities = 100/460 (21%), Positives = 177/460 (38%), Gaps = 42/460 (9%)

Query: 57  KKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGN 114
             +   +S       A  +   V            H   +  +     GE +LS   DG 
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88

Query: 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK 173
           + +W     E+ +  +  +  D   +   +  PD     +   S +G+++LW++ST  K 
Sbjct: 89  IKLWDLDNGEKLIKSLEGLH-DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232
           +   +G   S++S   SP   ++A G S DG I + ++R  + L T        V++LAF
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAF 206

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
           S DG  L+ASG+S G I +W+L   +L       H ++++S  F  +  +L S S+D +I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352
           ++W          LLR  SGHS+  L + F  +G+ + S   D   RL+ +         
Sbjct: 266 RLW---DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG------ 316

Query: 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412
                    + L     +    PV +   +     D   +V+   D     +W L+    
Sbjct: 317 ---------KLLSSLTLKGHEGPVSSLSFSP----DGSLLVSGGSDDGTIRLWDLR---- 359

Query: 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
                    E  + V + + S  G     G+  G +  ++L +G           R+   
Sbjct: 360 -TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL--------RNLDG 410

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512
           H   V  +        + S      I++WD K       +
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 61/332 (18%), Positives = 116/332 (34%), Gaps = 67/332 (20%)

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           GH+    C+ F  +G+ + +   D   +++ +   +  R L              K    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--------------KGHTG 52

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN----FVLGEHILRPCPENPTAV 427
            ++ V A             + +   D     +W L+       L  H         + V
Sbjct: 53  PVRDVAASADGT-------YLASGSSDK-TIRLWDLETGECVRTLTGH--------TSYV 96

Query: 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487
            +   S  G      +    I+ +++++G    +           H   V  VA     T
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--------HTDWVNSVAFSPDGT 148

Query: 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-----------IVYHRVNGLLATVADD 536
            + S+   G IK+WD +              V            + +      L + + D
Sbjct: 149 FVASSSQDGTIKLWDLRT----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI- 595
             I+L+D+   + +    GH + +    FS DG  L S   DG++R+WD+     +  + 
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 596 -HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            H   S+T+L+ SP+   LA+   D   + +W
Sbjct: 259 GH-TNSVTSLAWSPDGKRLASGSAD-GTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 88/426 (20%), Positives = 167/426 (39%), Gaps = 45/426 (10%)

Query: 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267
            N     +      S+         SS+   LL +  S  ++S+ +L    L+      H
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG-----H 64

Query: 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF-YANG 326
           +++I S+ F  +  +L+S S+D +IK+W  D  +G+  +      H +    +     +G
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
             IL A             D   +        K  R L+   E +     +AF       
Sbjct: 123 NSILLASSSL---------DGTVKLWDLSTPGKLIRTLEGHSESVTS---LAFSPDGK-- 168

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAG 445
                + +         +W L+    G+ +          V +   S  G   +   ++ 
Sbjct: 169 ----LLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDP-VSSLAFSPDGGLLIASGSSD 220

Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK- 504
           G I  ++L +G    S L         H+  VV  +     +L+ S    G I++WD + 
Sbjct: 221 GTIRLWDLSTGKLLRSTLS-------GHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 505 -GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRIT 561
               L++      S++ + +     LLA+ + D  +RL+D+    L      +GH   ++
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 562 DFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620
              FS DG  L+S G  DG++R+WD+   + +  +    ++ ++S SP+  V+++   D 
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD- 391

Query: 621 NGVYLW 626
             V LW
Sbjct: 392 GTVRLW 397

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           +R  +GHT  +T   FS DG  L S   DG++R+WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           ++  +GHT  +T   FS DGK+L S   DG++++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|217955 pfam04192, Utp21, Utp21 specific WD40 associated putative domain

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 17/27 (62%), Positives = 25/27 (92%), Gaps = 1/27 (3%)

Query: 690 QI-PDLVTLSLLPKSQWQSLINLDIIK 715
           Q+  +LVTLSLLP+S+WQ+L++LD+IK
Sbjct: 24  QLSEELVTLSLLPRSRWQTLLHLDVIK 50

Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Length = 233

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS 607
           + R  +GHT  +T   FS DGK L +   DG++++WD+     +  +      +  ++ S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 608 PNMDVLATAHVDQNGVYLW 626
            +   LA+   D   + LW
Sbjct: 61  ADGTYLASGSSD-KTIRLW 78

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 148 DTYLNKVIVGSQ-EGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           ++Y+   +  S  EG +Q+W+++     T+ K +E + W    SS  + P L  +A G  
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS--ADPTL--LASGSD 596

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           DG + + ++     + T     +  +  + F S+    LA G++   +  ++L   +L  
Sbjct: 597 DGSVKLWSINQGVSIGTI--KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                H +  +S   F +   L+S+S DN++K+W
Sbjct: 655 CTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLW 687

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	764
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.73
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG2315	566	consensus Predicted translation initiation factor	99.69
KOG2315	566	consensus Predicted translation initiation factor	99.68
COG4946	668	Uncharacterized protein related to the periplasmic	99.68
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.54
KOG2314	698	consensus Translation initiation factor 3, subunit	99.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.51
KOG2314	698	consensus Translation initiation factor 3, subunit	99.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.27
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.22
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	99.09
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.99
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.95
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.94
PRK02888	635	nitrous-oxide reductase; Validated	98.91
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.79
KOG2695	425	consensus WD40 repeat protein [General function pr	98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.75
PRK02888	635	nitrous-oxide reductase; Validated	98.74
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.69
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
KOG3621	726	consensus WD40 repeat-containing protein [General	98.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
KOG2695	425	consensus WD40 repeat protein [General function pr	98.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.53
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.48
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.47
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.45
KOG3621	726	consensus WD40 repeat-containing protein [General	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.41
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.33
COG3391	381	Uncharacterized conserved protein [Function unknow	98.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.13
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.1
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.98
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.9
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.84
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.67
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.47
KOG2395	644	consensus Protein involved in vacuole import and d	97.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.38
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.37
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.22
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.17
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.14
KOG2444	238	consensus WD40 repeat protein [General function pr	97.13
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.11
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.84
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.76
KOG2444	238	consensus WD40 repeat protein [General function pr	96.75
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.66
PHA02713	557	hypothetical protein; Provisional	96.62
PRK13684	334	Ycf48-like protein; Provisional	96.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.57
COG5276	370	Uncharacterized conserved protein [Function unknow	96.54
PHA02713	557	hypothetical protein; Provisional	96.5
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.49
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.48
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.46
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.46
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.23
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.23
PRK10115	686	protease 2; Provisional	96.01
COG5276	370	Uncharacterized conserved protein [Function unknow	95.98
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.92
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.7
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.64
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.63
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.55
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.53
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.5
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.5
PRK13684	334	Ycf48-like protein; Provisional	95.44
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.4
PRK10115	686	protease 2; Provisional	95.39
PHA03098	534	kelch-like protein; Provisional	95.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.24
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.06
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.87
PHA03098	534	kelch-like protein; Provisional	94.68
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.63
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.5
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	94.48
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.42
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.22
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.1
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.05
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.71
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.7
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.54
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.52
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.39
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.15
COG5167	776	VID27 Protein involved in vacuole import and degra	93.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.94
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.8
COG4590	733	ABC-type uncharacterized transport system, permeas	92.79
PHA02790	480	Kelch-like protein; Provisional	92.68
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.63
COG5167	776	VID27 Protein involved in vacuole import and degra	92.61
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	92.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.38
PHA02790	480	Kelch-like protein; Provisional	92.17
KOG2247	615	consensus WD40 repeat-containing protein [General	92.15
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.99
KOG2247	615	consensus WD40 repeat-containing protein [General	91.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.88
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.82
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.61
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.52
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.45
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.3
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.28
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.13
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.9
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.59
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.57
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.26
COG4590	733	ABC-type uncharacterized transport system, permeas	90.08
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.25
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.53
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.41
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.58
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.37
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.24
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.15
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	86.77
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.41
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	86.37
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.17
PLN02193	470	nitrile-specifier protein	85.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.76
PLN02153	341	epithiospecifier protein	85.63
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.37
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.06
PRK13614	573	lipoprotein LpqB; Provisional	84.53
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.52
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	84.43

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1e-121  Score=920.19  Aligned_cols=720  Identities=45%  Similarity=0.770  Sum_probs=669.5

Q ss_pred             CcccccceeeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEE
Q 004270            1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV   80 (764)
Q Consensus         1 ~~~~~p~r~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw   80 (764)
                      +.||+|||++|||+++|||.+..+++.++++++.|+++++||+++++++++++.++..|+|++.+.+.+|+|+|+.|++|
T Consensus        21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~  100 (910)
T KOG1539|consen   21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY  100 (910)
T ss_pred             cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceEEE-ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270           81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (764)
Q Consensus        81 ~~~~~~~~-~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~  158 (764)
                      .+++.+.. +.+|.+.|.-+.+.|.+|++++.++.+.||+..+.+.. .....-.+...++ ++..+||++|+|+++.|+
T Consensus       101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs  179 (910)
T KOG1539|consen  101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS  179 (910)
T ss_pred             EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence            99976555 89999999999999999999999999999999985221 1112233334444 788899999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .+|.+++||+++++.+++++++...|+++..+|.-+.+|+|..+|+|.++|++.++.+.+|++. .+.|++++|..||++
T Consensus       180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP  258 (910)
T ss_pred             cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence            9999999999999999999999999999999999999999999999999999999999999987 799999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      +|++|+..|.+.+||++..+.+..++.+|.+.|....|.|..+.+++++.|+++++|-++++++.+++++.+.||..|+.
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~  338 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS  338 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch-hhhhccCceeEeeecccccccccceeEee
Q 004270          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       319 ~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      +++|.. +|..+++++.|++++.+++....+.+++.+.+..++.++.+.. ....+++|+..+++...|+.+|++++++|
T Consensus       339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h  418 (910)
T KOG1539|consen  339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH  418 (910)
T ss_pred             heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence            999995 8999999999999999999999999999997777777888777 78899999999999999999999999999


Q ss_pred             eCCceEEEEEccceeecceeecCCCCC--CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                      .++..+++|++++..+|++.+.+.+..  ...++++++++||++.++|++.|.|.+||+++|..+..|..     ...|.
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~  493 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK  493 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence            999999999999999999999887544  46789999999999999999999999999999999999842     14899


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~  554 (764)
                      ++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++.+|-.|+++|..+.+.++.|.
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  634 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~  634 (764)
                      ||.++|++++|||||+||++++.|++||+||++++.+++.+..+.+++++.|||+|++|||+|.|+++||+|.++++|..
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~  653 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS  653 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCCcccCCCCCceeeecCCCccCccCccCCCCCCCCCccCCCCCCCCCCCCCccCcccCeeEecCCcHHhHhhccChHhh
Q 004270          635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII  714 (764)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~p~~~~~~l~~l~~i  714 (764)
                      ++.+ .++.++.+..+.+|+...+.++++++..-     |.  .+++..|.+++|++++|+|||+||+||||+|||||.|
T Consensus       654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~~tL-----E~--~~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI  725 (910)
T KOG1539|consen  654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDEVTL-----ES--NDEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI  725 (910)
T ss_pred             cccc-ccCcccccceeecCcccccccchhhhhhh-----hc--cccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence            9888 99888888999999966554443322111     11  1233589999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcCCCcccc
Q 004270          715 KFQHLLIILKVCPHLLWIWNF  735 (764)
Q Consensus       715 ~~r~~p~~~~~~p~~~p~~~~  735 (764)
                      |+||||+||||+||+||||=+
T Consensus       726 k~RnkPke~PK~pkkaPFFLp  746 (910)
T KOG1539|consen  726 KKRNKPKEPPKKPKKAPFFLP  746 (910)
T ss_pred             HhcCCCCCCCCccccCCcccc
Confidence            999999999999999999955

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.5e-57  Score=448.11  Aligned_cols=568  Identities=19%  Similarity=0.287  Sum_probs=476.0

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeE-EEec-CCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecc-cccc
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNL-VLVG-PQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSR-HSAK   95 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~-h~~~   95 (764)
                      ++++.|++.+ +..|.+-|+.+++. +... +..+..|++++++||...+.+..   -+++|+.  ++.+..++. |++|
T Consensus        29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P  107 (775)
T KOG0319|consen   29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP  107 (775)
T ss_pred             CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence            6777777776 46688889999888 3333 55678899999999966654432   2888874  666777777 9999


Q ss_pred             eEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-
Q 004270           96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-  172 (764)
Q Consensus        96 v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-  172 (764)
                      |..++++  |..|++|+.||.++|||+..+..    ...+..+++.+..+.|+|......|++|..|+.+++||+.+.. 
T Consensus       108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence            9999985  67899999999999999999998    8899999999999999999876779999999999999998655 


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-----CCCEEEEEeCCC
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG  247 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-----~~~~l~sg~~dg  247 (764)
                      +++.+..|.+.|++++|++|+..+++++.|..+.|||+.+-+....+..  ...+-++.+-++     |. ++.+++.+|
T Consensus       184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~-~~~TaG~~g  260 (775)
T KOG0319|consen  184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGE-YIITAGGSG  260 (775)
T ss_pred             HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcce-EEEEecCCc
Confidence            4888999999999999999999999999999999999988777777765  356788888877     56 888999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CC
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG  326 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~  326 (764)
                      .+++||.+++++...........+..+...+....++....|..+.++|.+..    ++.+.+.|..+.|..++|.. +.
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~  336 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE  336 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence            99999999998877665333444777777777777888888999999987766    67788889999999999875 77


Q ss_pred             CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      ++++.+++.+.+|+|++.+..+.  +-.++.                ..+.+++     ......+++.++.+.++++|.
T Consensus       337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~----------------e~vlSL~-----~~~~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHT----------------EAVLSLD-----VWSSGDLLATGSKDKSVILWR  393 (775)
T ss_pred             ceEEEEeCCCceEEEecCCCceE--EEeCch----------------hheeeee-----ecccCcEEEEecCCceEEEEE
Confidence            89999999999999987765543  222211                1122222     011124677788899999999


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccceec-CccccccccccCcEEEEEECC
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYL-DMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~  484 (764)
                      +.+............+|...|.+++++..+ .++++++.|+++++|++...+...... .........|...|++++++|
T Consensus       394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence            977666666777778999999999997766 689999999999999998733222211 001112358999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                      +.++++|||.|.+.++|++...+....+.+| ..+.++.|+|..+.+|+++.|++|+||.+.++.++++|.||+..|..+
T Consensus       474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence            9999999999999999999999999999888 899999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      .|-.+|+.|+|++.||-|++|+++++.++.++..|.. |++++-+|.+.+++||+.|+ .|.+|.
T Consensus       554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg-~i~~wk  617 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG-RIIFWK  617 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe-EEEEee
Confidence            9999999999999999999999999999999988876 99999999999999999999 499997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-53  Score=425.14  Aligned_cols=525  Identities=16%  Similarity=0.292  Sum_probs=444.0

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE--CCeEEEEecCceE----------EEecc
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQV----------ATWSR   91 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~--g~~i~vw~~~~~~----------~~~~~   91 (764)
                      +++.++++...+|...+-+......++.. ....+|.|+.||||+.++|.  |+.+.+|..++++          +++.|
T Consensus        65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f-~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g  143 (893)
T KOG0291|consen   65 PDGTLLLAVDERGRALLVSLLSRSVLHRF-NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG  143 (893)
T ss_pred             CCceEEEEEcCCCcEEEEecccceeeEEE-eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence            66778888888777777777776666655 35889999999999888765  5569999865542          23789


Q ss_pred             cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (764)
Q Consensus        92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~  169 (764)
                      |...|+++.|  |.++|++++.|-++++|.++..+-..  ...+..|...+..|.|..+.  ..+++.+.||.+.+|-..
T Consensus       144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~--~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~  219 (893)
T KOG0291|consen  144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF--TYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD  219 (893)
T ss_pred             CccceeEEEeccCCceEEeccccceEEEEEeccccccc--eEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence            9999999998  68899999999999999998776522  45567788999999999998  689999999999999765


Q ss_pred             C-----------------------CeE-----------EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270          170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (764)
Q Consensus       170 ~-----------------------~~~-----------~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (764)
                      .                       ++.           .+-+......|++.+|++..+.||+|-..|...+|.+..-..
T Consensus       220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l  299 (893)
T KOG0291|consen  220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL  299 (893)
T ss_pred             CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence            1                       111           111233357899999999999999999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270          216 LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (764)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v  294 (764)
                      ++.+... ..+|..++|+..|. .+|.|+ .-|.+.||+..+...+...+ +|...+++++++|||+++++|+.||.|+|
T Consensus       300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            9999876 67899999999999 777776 45899999999998888888 99999999999999999999999999999


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      ||...+    -+..++..|...|+.+.|+..|+.+++.+-||+||.||+...+.-+.+..                    
T Consensus       377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--------------------  432 (893)
T KOG0291|consen  377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--------------------  432 (893)
T ss_pred             EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence            987665    68889999999999999999999999999999999999987766555432                    


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEEC
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL  453 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~  453 (764)
                                                                     +.+....+++..|.|..+++|+.|. .|.+|++
T Consensus       433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~  465 (893)
T KOG0291|consen  433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV  465 (893)
T ss_pred             -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence                                                           1235678999999999999999987 8999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (764)
                      ++|+.+..+.        +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+-||+
T Consensus       466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence            9999999886        9999999999999999999999999999999754 456778888899999999999999999


Q ss_pred             EeCCCeEEEEEccCCeEEEEeec--------------------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270          533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (764)
Q Consensus       533 ~~~d~~i~v~d~~~~~~~~~~~~--------------------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  592 (764)
                      ++-||.|.+||.+.+..+..+.|                    .....+.+++|+||.++++|++...|++||++++-++
T Consensus       538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence            99999999999988766644432                    2246899999999999999999999999999887766


Q ss_pred             EEEee---------------------------------------------------------CCceEEEEEcCCCCeEEE
Q 004270          593 DAIHV---------------------------------------------------------DVSITALSLSPNMDVLAT  615 (764)
Q Consensus       593 ~~~~~---------------------------------------------------------~~~v~~l~~sp~g~~lat  615 (764)
                      +.++.                                                         .-.|+++.|||.|+-+|.
T Consensus       618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa  697 (893)
T KOG0291|consen  618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA  697 (893)
T ss_pred             eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence            65541                                                         002889999999999999


Q ss_pred             EEeCCCeEEEEeccc--ccCCCCC
Q 004270          616 AHVDQNGVYLWVNRC--MFSGDSN  637 (764)
Q Consensus       616 ~~~d~~~i~lW~~~~--~~~~~~~  637 (764)
                      ++..|  +.||.++.  .|.|..+
T Consensus       698 atTEG--l~IYsld~~~~FDPf~L  719 (893)
T KOG0291|consen  698 ATTEG--LLIYSLDTTILFDPFDL  719 (893)
T ss_pred             ecccc--eEEEecCCceEEccccc
Confidence            99887  77787754  4555543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.6e-54  Score=409.24  Aligned_cols=512  Identities=16%  Similarity=0.196  Sum_probs=421.2

Q ss_pred             ecCCeEEEEEEeCCeEEEEecCCCeEE-E-ecCCCCcceEEEEEeCCeEEEE-ECCe------EEEEecCceEEEecccc
Q 004270           23 RLGTENFVTVSVGKAFHIYNCAKLNLV-L-VGPQLPKKIRALASYRDYTFAA-YGNH------IAVVKRAHQVATWSRHS   93 (764)
Q Consensus        23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~-~-~~~~~~~~I~~~~~~~~~~~~a-~g~~------i~vw~~~~~~~~~~~h~   93 (764)
                      .|.+.|++++...|.+||||......+ . ..+...++|..+++++|++.++ .|..      +..||.+..+..+.||+
T Consensus        68 SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhS  147 (603)
T KOG0318|consen   68 SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHS  147 (603)
T ss_pred             CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccc
Confidence            378999999999999999999874333 2 4467899999999999966654 4432      89999999999999999


Q ss_pred             cceEEEEEe---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC
Q 004270           94 AKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (764)
Q Consensus        94 ~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~  170 (764)
                      ..|.++.+-   .-++++|++|++|.+|+-...+.    -.++..|..++..+.|+|++  +++++++.||++.+||-.+
T Consensus       148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCC
Confidence            999999983   45899999999999998766665    55667789999999999999  8999999999999999999


Q ss_pred             CeEEEEEc---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC--CCEEEEEEeeCCCCEEEEEeC
Q 004270          171 KKKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       171 ~~~~~~~~---~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      |+.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++..+..  ..-..+-|.  +. .|++-+.
T Consensus       222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd-~lItVSl  298 (603)
T KOG0318|consen  222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD-HLITVSL  298 (603)
T ss_pred             ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC-eEEEEEc
Confidence            99999998   8999999999999999999999999999999999999999987643  344455565  33 6888999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      +|.|.+++......+..+. +|...|+++..+|++.+|++|+.||.|.-|+...+...   ...-.+|...|.+++-+..
T Consensus       299 ~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             CcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCC
Confidence            9999999999999888888 99999999999999999999999999999988766321   1122579999999998754


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      + .+++.+.|.++++.++..........                                                    
T Consensus       375 ~-~~~t~g~Dd~l~~~~~~~~~~t~~~~----------------------------------------------------  401 (603)
T KOG0318|consen  375 G-ELFTIGWDDTLRVISLKDNGYTKSEV----------------------------------------------------  401 (603)
T ss_pred             C-cEEEEecCCeEEEEecccCcccccce----------------------------------------------------
Confidence            4 58888999999999875443221100                                                    


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                     ........+++..++|.++++.+.++.+.+-+...-...            .-.....+++++|+
T Consensus       402 ---------------~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~------------~~~y~~s~vAv~~~  454 (603)
T KOG0318|consen  402 ---------------VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI------------PIGYESSAVAVSPD  454 (603)
T ss_pred             ---------------eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee------------ccccccceEEEcCC
Confidence                           011144558899999988888877765554433321111            23446789999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCee---eeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-CCCCee
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRIT  561 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~  561 (764)
                      +..++.|+.||.|++|.+....+.   ...++.++|++++||||+.+||++...+.+.+||+.+.+......+ |+.+|.
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~  534 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN  534 (603)
T ss_pred             CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence            999999999999999999986543   3456669999999999999999999999999999999887554444 999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe-eC-CceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          562 DFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VD-VSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +++|||+..++|||+.|-+|.||++......-.++ .| ..|+.+.|- |...|++++.|. .|++|++.
T Consensus       535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da-~iK~W~v~  602 (603)
T KOG0318|consen  535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDA-NIKVWNVT  602 (603)
T ss_pred             EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcc-eeEEeccc
Confidence            99999999999999999999999998754433332 23 349999996 556788999999 49999863

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-50  Score=385.58  Aligned_cols=527  Identities=16%  Similarity=0.218  Sum_probs=427.0

Q ss_pred             CCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce---EE-
Q 004270           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ---VA-   87 (764)
Q Consensus        15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~---~~-   87 (764)
                      .++|..+-.....--+.++.++++.+-++++...+.+...|...++-..+||.|-|+|+|+.   |++|+....   ++ 
T Consensus        18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn   97 (603)
T KOG0318|consen   18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN   97 (603)
T ss_pred             CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence            34555544444444556778999999999999999999999999999999999999999876   999996442   22 


Q ss_pred             EecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           88 TWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        88 ~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      +++.-.++|..|++  ++++|++.++-    |.+.+||  ++..    +.++..|...+.+|.|-|... -++++|+.|+
T Consensus        98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn  170 (603)
T KOG0318|consen   98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDN  170 (603)
T ss_pred             eeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCC
Confidence            27788899999998  68899888752    2355665  5555    788999999999999999886 4899999999


Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEEeeCCCCE
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~d~~~~  239 (764)
                      ++.+|.-.-.+...++..|..-|.|+.|+|||.++|+++.||+|.+||-.+|+.+..+.  ..|++.|.+++|+||+. .
T Consensus       171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~  249 (603)
T KOG0318|consen  171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-Q  249 (603)
T ss_pred             eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-e
Confidence            99999988888889999999999999999999999999999999999999999999987  34589999999999999 8


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeecccc--cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          240 LASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      +++++.|.+++|||+.+.+++.++..+..  ..-..+-|-  ...|++.+.+|+|.+++.+..    ..+..+.||...|
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSI  323 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----Chhheecccccce
Confidence            99999999999999999999998874433  334445554  557999999999999977655    4677788999999


Q ss_pred             eeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      +++..++|+++|++|+.||.|.-|+..++...+...                                            
T Consensus       324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g--------------------------------------------  359 (603)
T KOG0318|consen  324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG--------------------------------------------  359 (603)
T ss_pred             eEEEEcCCCCEEEeeccCceEEEEecCCcccccccc--------------------------------------------
Confidence            999999999999999999999999987665433221                                            


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                             ..|...|.+++.+..+.++.+| .|.++++.++..+.......       ..-....
T Consensus       360 -----------------------~~h~nqI~~~~~~~~~~~~t~g-~Dd~l~~~~~~~~~~t~~~~-------~~lg~QP  408 (603)
T KOG0318|consen  360 -----------------------KGHTNQIKGMAASESGELFTIG-WDDTLRVISLKDNGYTKSEV-------VKLGSQP  408 (603)
T ss_pred             -----------------------ccccceEEEEeecCCCcEEEEe-cCCeEEEEecccCcccccce-------eecCCCc
Confidence                                   2456888888888766655554 66688888875543332211       0122334


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEeec
Q 004270          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEG  555 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~~~  555 (764)
                      .+++..+++.+++.+..++.+.+=|   ...+..........+++++|++..+|+|+.|+.|+||.+..+.+  ...+..
T Consensus       409 ~~lav~~d~~~avv~~~~~iv~l~~---~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~  485 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVACISDIVLLQD---QTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE  485 (603)
T ss_pred             eeEEEcCCCCEEEEEecCcEEEEec---CCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec
Confidence            5899999987777777666555433   33445555667889999999999999999999999999987654  334667


Q ss_pred             CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE-EEEe-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI-DAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  633 (764)
Q Consensus       556 h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-~~~~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~  633 (764)
                      |.++|+++++|||+.|||++...+.+.+||+.+.+.. ..+. ++..|.+++|+|+..++||++-|- .|.+|+++....
T Consensus       486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt-~Viiysv~kP~~  564 (603)
T KOG0318|consen  486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT-NVIIYSVKKPAK  564 (603)
T ss_pred             ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-eEEEEEccChhh
Confidence            9999999999999999999999999999999988763 2233 455699999999999999999999 599999986554


Q ss_pred             C
Q 004270          634 G  634 (764)
Q Consensus       634 ~  634 (764)
                      .
T Consensus       565 ~  565 (603)
T KOG0318|consen  565 H  565 (603)
T ss_pred             h
Confidence            4

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-51  Score=410.24  Aligned_cols=525  Identities=14%  Similarity=0.199  Sum_probs=440.6

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEECCe---EEEEecC--ceEEEecccccceE
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVN   97 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~--~~~~~~~~h~~~v~   97 (764)
                      +++++|++++....+++|.+.+++++..... |++||--|+|+|.+.++|+|+-   +.|||..  ...+.++||.+.|.
T Consensus        72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs  151 (775)
T KOG0319|consen   72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS  151 (775)
T ss_pred             CCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE
Confidence            6789999999999999999999998887755 9999999999999999999775   9999964  45677999999999


Q ss_pred             EEEEeC----CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270           98 LLLLFG----EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (764)
Q Consensus        98 ~l~~~g----~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~  173 (764)
                      ++.|.+    ..|+++..|+++++||+.+...   .+..+..|...+.+..+++++  ..+++++.|..+.+||+.+.+.
T Consensus       152 sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t---cl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~  226 (775)
T KOG0319|consen  152 SLLFHPHWNRWLLASGATDGTVRVWNLNDKRT---CLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKK  226 (775)
T ss_pred             EEEeCCccchhheeecCCCceEEEEEcccCch---HHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhh
Confidence            999843    4589999999999999986544   256667788889999999998  8899999999999999988888


Q ss_pred             EEEEcCCCCCeEEEEEcCC-----CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          174 LYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       174 ~~~~~~h~~~i~~~~~sp~-----~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      ..++.. ...+-++.+-++     +.++.+++.+|.+++||.++++.+..........+..+...+... .++..+.+.+
T Consensus       227 l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~-~~l~vtaeQn  304 (775)
T KOG0319|consen  227 LKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS-QLLLVTAEQN  304 (775)
T ss_pred             hheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC-ceEEEEccce
Confidence            877765 456777777777     679999999999999999999988776654333355555555444 3555667899


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEe-cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      +.++|.++.++...+. |..+.|.+++|. |+.++|+.++..+.+|+++..+...     ..+.||...|.++....+|-
T Consensus       305 l~l~d~~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-----~ii~GH~e~vlSL~~~~~g~  378 (775)
T KOG0319|consen  305 LFLYDEDELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-----QIIPGHTEAVLSLDVWSSGD  378 (775)
T ss_pred             EEEEEccccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce-----EEEeCchhheeeeeecccCc
Confidence            9999999999999998 888899999985 5678999999999999997766532     25679999999999777888


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      +|++|+.|.++++|.+..+..... .            ......+...+.++.+    .......+...+.+..+++|++
T Consensus       379 llat~sKD~svilWr~~~~~~~~~-~------------~a~~~gH~~svgava~----~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNCSKSL-C------------VAQANGHTNSVGAVAG----SKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             EEEEecCCceEEEEEecCCcchhh-h------------hhhhcccccccceeee----cccCccEEEEecCCceEEEecC
Confidence            999999999999999843322111 1            1111223334455554    3455667888899999999999


Q ss_pred             cceeecce--ee---cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE
Q 004270          408 QNFVLGEH--IL---RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  482 (764)
Q Consensus       408 ~~~~~~~~--~~---~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  482 (764)
                      ...+....  .+   .....|...|.+++++|+.+.+++|+.|.+.++|+++.......+.        +|...|.++.|
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~F  513 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSF  513 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEe
Confidence            87222111  11   1234678999999999999999999999999999999888888885        99999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (764)
Q Consensus       483 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~  561 (764)
                      ++..+.++|++.|++|+||.+.+..++.++.++ ..|..+.|-.+++.|++++.||.+++|++.+++++.++.+|+++|.
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            999999999999999999999999999999966 8999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          562 DFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +++.+|.+.+++||+.||.|.+|.=
T Consensus       594 aL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  594 ALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             EEeecCccceeEecCCCeEEEEeec
Confidence            9999999999999999999999953

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-53  Score=388.19  Aligned_cols=365  Identities=21%  Similarity=0.344  Sum_probs=297.3

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      ++-.++.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.+.| ...|.|++|+|||+ .||+|+.||+|++
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l  183 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL  183 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence            456678999999999999999999999999999999999999999999886 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEec-----CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                      ||.++|+.+..-..+|...|++++|.|     ..++|++++.||+++|||+..+    .++..+.||..+|+|++|-.+|
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence            999999877666669999999999976     5679999999999999998766    6888999999999999997665


Q ss_pred             CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE--E
Q 004270          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY--V  404 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  404 (764)
                       ++++++.|++|++|+...+...+++....                               .|-+-+++..+ ..++  .
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lkGHa-------------------------------hwvN~lalsTd-y~LRtga  306 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELKGHA-------------------------------HWVNHLALSTD-YVLRTGA  306 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhcccc-------------------------------hheeeeeccch-hhhhccc
Confidence             89999999999999998877766654321                               11111111100 0000  0


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccccCcEEEEEEC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                      |+-.......  ........-.-...+.-..|..+++|+.|+++.+|+..... .+..+        .+|..-|+.+.|+
T Consensus       307 f~~t~~~~~~--~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fS  376 (480)
T KOG0271|consen  307 FDHTGRKPKS--FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFS  376 (480)
T ss_pred             cccccccCCC--hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh--------hchhhheeeEEEC
Confidence            0000000000  00000000000001111235679999999999999976544 44444        4999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (764)
Q Consensus       484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~  562 (764)
                      ||++++++++.|..|++|+.++|+.+..+..+ ..|..++|+.|.++|++|+.|.++++||+++.++...+.||.+.|.+
T Consensus       377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA  456 (480)
T ss_pred             CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence            99999999999999999999999999999977 99999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEE
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +.|+|||..+++|+.|..+++|.
T Consensus       457 vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  457 VDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-50  Score=402.25  Aligned_cols=582  Identities=15%  Similarity=0.216  Sum_probs=460.5

Q ss_pred             cccceeeeeecCCCcce---EEecCCeEEEEEEeCCeEEEEecCCCeEEEec--CCCCcceEEEEEeCCeEEEEECCe--
Q 004270            4 FEPYKAIGYITSSVPFS---VQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGNH--   76 (764)
Q Consensus         4 ~~p~r~~g~~~~~v~~~---~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~~~I~~~~~~~~~~~~a~g~~--   76 (764)
                      |.|-.+.|.+.+.+.-.   .........++++....+.+||++++......  .....+|+|++.+++...+|.|..  
T Consensus         8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG   87 (888)
T KOG0306|consen    8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG   87 (888)
T ss_pred             ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence            66777788887654433   22233466777778899999999999554433  234568999999999888877644  


Q ss_pred             -EEEEecC--ceEEEecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC
Q 004270           77 -IAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL  151 (764)
Q Consensus        77 -i~vw~~~--~~~~~~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  151 (764)
                       |++|+..  ....++.||+..|+.+.++  |..|+|||.|+.|.|||+-...-    ...+..|...+....|..+.  
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~--  161 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD--  161 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence             9999976  5567799999999999984  89999999999999999987776    66778888888777788766  


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC------------ceEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF  219 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~------------~~~~~~  219 (764)
                      +.+++.+.|+.|++||+++..+..+.-.|.+.|+++++.+  +.+++++.|+.+.+|++...            +...++
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            7899999999999999999999999999999999999998  68999999999999999311            122233


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee-----------------------------------eee
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----------------------------------VIR  264 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~-----------------------------------~~~  264 (764)
                      .....+..-.++..++++ +++.-+.|..+.++.+.+.+.+.                                   .++
T Consensus       240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir  318 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR  318 (888)
T ss_pred             eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence            333345556666667777 88888889999999886541110                                   011


Q ss_pred             cccccCeeEEEEecCCC---EEEEEcCCCcEEEEEecCCCCC-ceee----EeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                        -...+.++.|.|++.   .|++ -.++++..|.++..... ++..    ..+.||...|.+++++.+...+++|+ .+
T Consensus       319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~  394 (888)
T KOG0306|consen  319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GE  394 (888)
T ss_pred             --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CC
Confidence              234577888888654   3444 56789999988773221 2221    34569999999999998887777665 56


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      ++++|+..+.++.+.+..+.                   +.     ...--.|+..+..+...+.+.++|+....+    
T Consensus       395 SikiWn~~t~kciRTi~~~y-------------------~l-----~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l----  446 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTITCGY-------------------IL-----ASKFVPGDRYIVLGTKNGELQVFDLASASL----  446 (888)
T ss_pred             cEEEEEccCcceeEEecccc-------------------EE-----EEEecCCCceEEEeccCCceEEEEeehhhh----
Confidence            69999999998888765431                   11     111234677888889999999999987655    


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC-----cccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                      +...+.|.+.+.+++.+||+..+++|+.|.+|++|+..--     .....+.. .......-...|.++.+|||+++|+.
T Consensus       447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl-~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL-KHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee-ccceEEeccccEEEEEEcCCCcEEEE
Confidence            3334478899999999999999999999999999997422     11111110 00011234578999999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      +-.|.+|++|-+++.+....+-+| -||.||.+|||++++++|+.|.+|++|-++=|.+.+.+-+|.+.|.++.|-|+..
T Consensus       526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~  605 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH  605 (888)
T ss_pred             EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence            999999999999998887776655 8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          571 WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       571 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      ++.++|.|+.|+-||-..-+.+..+..|. .|++++.+|+|.++++++.|. +|++|.-
T Consensus       606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~  663 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER  663 (888)
T ss_pred             eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec
Confidence            99999999999999999999999987665 599999999999999999998 6999984

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-48  Score=389.08  Aligned_cols=521  Identities=17%  Similarity=0.233  Sum_probs=428.5

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCe---EEEEecCceEEEecccccceEEEE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH---IAVVKRAHQVATWSRHSAKVNLLL  100 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~---i~vw~~~~~~~~~~~h~~~v~~l~  100 (764)
                      ++.+-+..+.++.+.++|+++.+-....-.+...|++++.||+|.++.+ ...   +.+=-..+.+...-.-+.+|.++.
T Consensus        24 ~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~  103 (893)
T KOG0291|consen   24 KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIK  103 (893)
T ss_pred             CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEE
Confidence            4556677888999999999997766555567899999999999877654 332   333222333332223456788888


Q ss_pred             E--eCCEEEEEecCCcEEEEEccCCcc----cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE-
Q 004270          101 L--FGEHILSIDIDGNMFIWAFKGIEE----NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK-  173 (764)
Q Consensus       101 ~--~g~~l~s~~~dg~v~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~-  173 (764)
                      |  +|+++|.+. .+.+.||.......    .....++...|-..+.++-|+.|.  +.+++|+.|-+.++|.++..+. 
T Consensus       104 fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~  180 (893)
T KOG0291|consen  104 FSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSARLFGVDGNKNL  180 (893)
T ss_pred             ECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEEEEEecccccc
Confidence            6  788888876 67899999876543    122245566677778888899999  8999999999999999987666 


Q ss_pred             -EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-----------------------Cce-----E-----EEE
Q 004270          174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE-----L-----VTF  219 (764)
Q Consensus       174 -~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-----------------------~~~-----~-----~~~  219 (764)
                       .+.+.+|...|.++-|..+..-+.+.+.||.+.+|....                       ++.     .     ..+
T Consensus       181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~  260 (893)
T KOG0291|consen  181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY  260 (893)
T ss_pred             ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence             677899999999999999999999999999999998761                       111     1     111


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-CcEEEEEec
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFD  298 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~  298 (764)
                      .......|++.+|++... +|++|-..|...+|.+....+++.+. -...+|..++|+..|.+++.|+.. |.+-||++.
T Consensus       261 ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq  338 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ  338 (893)
T ss_pred             ecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence            112236899999999877 99999999999999999999999998 566799999999999999998865 899999998


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      ..    ..+....+|...+++++++|||+++++|+.||.|++||...+-+..++.                         
T Consensus       339 sE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-------------------------  389 (893)
T KOG0291|consen  339 SE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-------------------------  389 (893)
T ss_pred             cc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-------------------------
Confidence            77    4666678999999999999999999999999999999987765544432                         


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (764)
                                                                 .|.+.++.+.|+..|+.+++.+-||+|+.||+.....
T Consensus       390 -------------------------------------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  390 -------------------------------------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             -------------------------------------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence                                                       5679999999999999999999999999999999998


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCC
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD  536 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d  536 (764)
                      .+++..       .......+++.+|.|..++.|+.|. .|.+|++++|+++..+.+| ++|.+++|+|++..||+++.|
T Consensus       427 fRTft~-------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  427 FRTFTS-------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eeeecC-------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            888863       4455678999999999999998876 5999999999999999877 999999999999999999999


Q ss_pred             CeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee------------------
Q 004270          537 LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------------  597 (764)
Q Consensus       537 ~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------  597 (764)
                      .+|++||+-.. ..+.+++ +...+..++|+|||+-|+++..||.|.+||+..+.++..+.+                  
T Consensus       500 kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            99999998654 3445555 777899999999999999999999999999988766644332                  


Q ss_pred             ---CCceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270          598 ---DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       598 ---~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~  631 (764)
                         ....+.+++|+||.++++|+... .|++|+++..
T Consensus       579 sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~~  614 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKCILAGGESN-SICIYDVPEG  614 (893)
T ss_pred             cccCCceEEEEEcCCCCEEEecCCcc-cEEEEECchh
Confidence               13489999999999999999887 6999998643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-50  Score=371.46  Aligned_cols=366  Identities=18%  Similarity=0.281  Sum_probs=304.0

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      -..+..|...+.++.|+|++  ..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||.|++||
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g--~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTG--SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccccCCCCCcEEEEEecCCC--ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            34567889999999999999  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEEeccCCCCEEEEEEee-----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270          210 VRYDEELVTFTHSMRGAVTALAFSS-----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (764)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~-----d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  284 (764)
                      .++|+++..-..+|...|++++|.|     ..+ +||+++.||.++|||+..++++..+. +|+.+|+|+.|--+| +++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEE
Confidence            9999988777777799999999976     455 89999999999999999999999998 999999999997655 999


Q ss_pred             EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                      +++.|++|++|+...+    .+.+.+.||...|+.++.+.|- .|=+|..|.+=+-..        ..+  ...+++...
T Consensus       263 SgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy-~LRtgaf~~t~~~~~--------~~s--e~~~~Al~r  327 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDY-VLRTGAFDHTGRKPK--------SFS--EEQKKALER  327 (480)
T ss_pred             ecCCCceEEEEEccch----hHHHhhcccchheeeeeccchh-hhhccccccccccCC--------ChH--HHHHHHHHH
Confidence            9999999999976554    6888999999999999987542 233444333211111        100  000000000


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                        -              .... .+....+..+.++.++.+|+......   .+....+|...|..+.||||++++++++-
T Consensus       328 --Y--------------~~~~-~~~~erlVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r~IASaSF  387 (480)
T KOG0271|consen  328 --Y--------------EAVL-KDSGERLVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGRYIASASF  387 (480)
T ss_pred             --H--------------HHhh-ccCcceeEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCccEEEEeec
Confidence              0              0000 11123455667788888888665432   22334478899999999999999999999


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEE
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVY  523 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~  523 (764)
                      |..|++|+..+|+.+.+|.        +|-..|..++|+.|.++|++|+.|.++++|++++.++...+..+ ..|.++.|
T Consensus       388 DkSVkLW~g~tGk~lasfR--------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw  459 (480)
T KOG0271|consen  388 DKSVKLWDGRTGKFLASFR--------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW  459 (480)
T ss_pred             ccceeeeeCCCcchhhhhh--------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence            9999999999999999985        99999999999999999999999999999999999999999855 89999999


Q ss_pred             eecCCEEEEEeCCCeEEEEE
Q 004270          524 HRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       524 s~~~~~la~~~~d~~i~v~d  543 (764)
                      +|||..+++|+.|..+++|.
T Consensus       460 spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceeecCCCceEEEeec
Confidence            99999999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-47  Score=381.14  Aligned_cols=482  Identities=15%  Similarity=0.242  Sum_probs=395.1

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce--EEEecccccceEE
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL   98 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~v~~   98 (764)
                      ++.-.++++..||.|+||+..+.....++.+|...|+++.|+..|..+++|+.   |.|||.-.+  ..+++||.+.|+.
T Consensus        75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~  154 (888)
T KOG0306|consen   75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ  154 (888)
T ss_pred             CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence            45566799999999999999999999999999999999999999999999876   999997444  5569999999999


Q ss_pred             EEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC------
Q 004270           99 LLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------  170 (764)
Q Consensus        99 l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~------  170 (764)
                      ..|  +.++|++++.|+.|++||+++..+    ..+.-.|.+.+..+++++    +.+++++.|+.+.+|++..      
T Consensus       155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence            988  368999999999999999999988    677777888888888888    3689999999999999811      


Q ss_pred             ------------------CeEEEE----------EcCC------------------------------------------
Q 004270          171 ------------------KKKLYE----------FKGW------------------------------------------  180 (764)
Q Consensus       171 ------------------~~~~~~----------~~~h------------------------------------------  180 (764)
                                        ++.+..          .+++                                          
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                              001100          0000                                          


Q ss_pred             -------------CCCeEEEEEcCCCC---EEEEEEcCCeEEEEEccC-Cce------E--EEEeccCCCCEEEEEEeeC
Q 004270          181 -------------GSSISSCVSSPALD---VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSD  235 (764)
Q Consensus       181 -------------~~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~-~~~------~--~~~~~~~~~~v~~l~fs~d  235 (764)
                                   ...|.++.+.|.+.   .|+. ..++++..|.+.. ++.      +  ..+ .+|...|.+++++.+
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d  384 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSD  384 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecC
Confidence                         24556666666543   2333 5677888887765 211      1  222 445889999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      .. ++++|+ .+.|++|+..+.+++.++.   .+.+.+..|.|.++++++|...|.+.++|+...    .++.....|.+
T Consensus       385 ~~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdg  455 (888)
T KOG0306|consen  385 SI-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDG  455 (888)
T ss_pred             ce-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhcccc
Confidence            86 666654 6799999999999999987   238899999999999999999999999999876    46667779999


Q ss_pred             CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (764)
                      .+.+++.+||++.+++||.|.+|++||..--...                                              
T Consensus       456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~----------------------------------------------  489 (888)
T KOG0306|consen  456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV----------------------------------------------  489 (888)
T ss_pred             ceeeeeecCCCCceEEecCCcEEEEEeEEEEecc----------------------------------------------
Confidence            9999999999999999999999999997532110                                              


Q ss_pred             eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                        ...+-++..+..    ...+    .-...|.|+.+||||++++++--|.++++|-+.+.+...++        ++|.-
T Consensus       490 --~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkL  551 (888)
T KOG0306|consen  490 --PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKL  551 (888)
T ss_pred             --Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------ccccc
Confidence              000000000000    0000    12378999999999999999999999999999998887776        49999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~  554 (764)
                      +|.++.++||+++++||+.|..|++|-++-|.+-+.+-. ...|.++.|-|...++.+++.|+.|+-||-...+.++.+.
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            999999999999999999999999999999988777654 4899999999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +|...|.+++.+|+|.+++++|.|.+||+|.-..
T Consensus       632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999999999654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-44  Score=351.69  Aligned_cols=515  Identities=15%  Similarity=0.221  Sum_probs=394.6

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe-----EEEEecC--ceEEEecccccceE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN   97 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~-----i~vw~~~--~~~~~~~~h~~~v~   97 (764)
                      ...-++.+..|..+.+||++..++-+....+..+++|+|||++|+|+|+|..     ++||+..  ..++++..|+-.|+
T Consensus        47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt  126 (1080)
T KOG1408|consen   47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT  126 (1080)
T ss_pred             ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence            3456888999999999999999999888889999999999999999999874     9999964  45788999999999


Q ss_pred             EEEE--eCCEEEEEecCC--cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270           98 LLLL--FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (764)
Q Consensus        98 ~l~~--~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~  173 (764)
                      +++|  .++|+++.+...  .|.+||..-...    ...-+ -...+..++|+.++  .+.++.+. ..|++|.++.++.
T Consensus       127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnk-iss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K  198 (1080)
T KOG1408|consen  127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNK-ISSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK  198 (1080)
T ss_pred             eeeecCCCcEEEeeccccceEEEhhhhhhccc----ccccc-cceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence            9998  589999988744  477887654332    11111 23445677899999  67887755 5799999876552


Q ss_pred             EEE-------------E------------------------cCC-----------------CCCeEEEEEcCCCCEEEEE
Q 004270          174 LYE-------------F------------------------KGW-----------------GSSISSCVSSPALDVVAVG  199 (764)
Q Consensus       174 ~~~-------------~------------------------~~h-----------------~~~i~~~~~sp~~~~la~g  199 (764)
                      ...             +                        .||                 .....|++.  ..++|++|
T Consensus       199 ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cg  276 (1080)
T KOG1408|consen  199 YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACG  276 (1080)
T ss_pred             ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEe
Confidence            100             0                        011                 111233333  34789999


Q ss_pred             EcCCeEEEEEccCCceEEEEeccCC-----------------------CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          200 CSDGKIHVHNVRYDEELVTFTHSMR-----------------------GAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       200 ~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      +.+|.|++|+..+-..+.++...|.                       -...++.|++... .|.....|..|+|||++.
T Consensus       277 Ca~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~-klscVYndhSlYvWDvrD  355 (1080)
T KOG1408|consen  277 CAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD-KLSCVYNDHSLYVWDVRD  355 (1080)
T ss_pred             eccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc-eEEEEEcCceEEEEeccc
Confidence            9999999999887665555543221                       1235678888777 788888999999999987


Q ss_pred             ce----eeeeeecccccCeeEEEEecC-----------CCEEEEEcCCCcEEEEEecCCCCCcee---------------
Q 004270          257 RR----LQSVIREAHDNAIISLHFFAN-----------EPVLMSASADNSIKMWIFDTTDGDPRL---------------  306 (764)
Q Consensus       257 ~~----~~~~~~~~h~~~v~~l~~~~~-----------~~~l~s~~~d~~i~vw~~~~~~~~~~~---------------  306 (764)
                      -+    ....+  -|...|+++.-.|-           ...+++++.|++|++|+++........               
T Consensus       356 ~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~  433 (1080)
T KOG1408|consen  356 VNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE  433 (1080)
T ss_pred             cccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence            53    33333  48888888876651           125899999999999998763211110               


Q ss_pred             ------------------eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchh
Q 004270          307 ------------------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (764)
Q Consensus       307 ------------------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (764)
                                        .....+....+.+++.+|+|++|++|..-|.+++|++........                 
T Consensus       434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~-----------------  496 (1080)
T KOG1408|consen  434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF-----------------  496 (1080)
T ss_pred             cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhh-----------------
Confidence                              001112345789999999999999999999999999865432221                 


Q ss_pred             hhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEEecC
Q 004270          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAG  445 (764)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~~  445 (764)
                                                                         ...|...|.|+.+|..   .++|++++.|
T Consensus       497 ---------------------------------------------------~eAHesEilcLeyS~p~~~~kLLASasrd  525 (1080)
T KOG1408|consen  497 ---------------------------------------------------MEAHESEILCLEYSFPVLTNKLLASASRD  525 (1080)
T ss_pred             ---------------------------------------------------eecccceeEEEeecCchhhhHhhhhccCC
Confidence                                                               2246688888888753   4789999999


Q ss_pred             CcEEEEECcCCcc-cceecCccccccccccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCC---CCeeeeE---ecCc
Q 004270          446 GWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGYHGDIKVWDFKG---RDLKSRW---EVGC  516 (764)
Q Consensus       446 g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~---~~~~~~~---~~~~  516 (764)
                      ..|++||....-. ..++        .+|...|+++.|...|  ..++++|.|..|.+--...   +.+...-   -.+.
T Consensus       526 RlIHV~Dv~rny~l~qtl--------d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt  597 (1080)
T KOG1408|consen  526 RLIHVYDVKRNYDLVQTL--------DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT  597 (1080)
T ss_pred             ceEEEEecccccchhhhh--------cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence            9999999865543 3333        4999999999998877  7899999998876544332   2211111   1236


Q ss_pred             ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  593 (764)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  593 (764)
                      .+..|+..|..+++++++.|..|+|||+++++.++.|+|   |.+..-.+...|.|-|||+...|.++.++|..+|+++.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            788999999999999999999999999999999999986   66778889999999999999999999999999999999


Q ss_pred             EEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          594 AIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       594 ~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ...+|+. |+.+.|++|-+.|++++.|+. |++|.+.
T Consensus       678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgC-IFvW~lp  713 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVKFLNDCKHLISVSGDGC-IFVWKLP  713 (1080)
T ss_pred             hhcCcchheeeeeecccchhheeecCCce-EEEEECc
Confidence            9988887 999999999999999999995 9999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-44  Score=338.16  Aligned_cols=279  Identities=21%  Similarity=0.383  Sum_probs=262.2

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      ..+|..+.|++|+. .|+||+.+|.+++|+..+...+.++. +|.+.|.++.|+|.  +..++|++.||++++|+++.. 
T Consensus       175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-  251 (459)
T KOG0272|consen  175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-  251 (459)
T ss_pred             CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence            67999999999999 99999999999999999999999998 99999999999997  568999999999999998876 


Q ss_pred             CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                         .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+......                              
T Consensus       252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------  298 (459)
T KOG0272|consen  252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------  298 (459)
T ss_pred             ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence               57788899999999999999999999999999999999876543211                              


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                                                                                      
T Consensus       299 --------------------------------------------------------------------------------  298 (459)
T KOG0272|consen  299 --------------------------------------------------------------------------------  298 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEE
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                      .        .+|...|.+++|.+||.+++|||.|..-+|||++++.++..+..+ .+|..++|+|+|..||+|+.|++++
T Consensus       299 Q--------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  299 Q--------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK  370 (459)
T ss_pred             h--------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence            0        399999999999999999999999999999999999999999888 8999999999999999999999999


Q ss_pred             EEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEe
Q 004270          541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV  618 (764)
Q Consensus       541 v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~  618 (764)
                      |||++..+.+..+.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.++.+++.+.+|.. |.++..++|++++++++.
T Consensus       371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence            999999999999999999999999999 789999999999999999999999999998886 999999999999999999


Q ss_pred             CCCeEEEEe
Q 004270          619 DQNGVYLWV  627 (764)
Q Consensus       619 d~~~i~lW~  627 (764)
                      |. ++++|.
T Consensus       451 DR-T~KLW~  458 (459)
T KOG0272|consen  451 DR-TIKLWR  458 (459)
T ss_pred             Cc-eeeecc
Confidence            99 799996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-44  Score=337.78  Aligned_cols=283  Identities=20%  Similarity=0.325  Sum_probs=262.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-CCCEEEEEeCCCcEEEEECCCc
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      +-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| ...|.++.|+|. ...-||+|+.||++++|++.+.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            45789999999999999999999999999999999999999876 899999999998 3447999999999999999999


Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      .++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+.    ..+....||...|.+++|.+||..+++||.|..
T Consensus       252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccc----hhhHhhcccccccceeEecCCCceeeccCccch
Confidence            9999998 99999999999999999999999999999999887    455566899999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      -++||++++.++..                                                                  
T Consensus       327 ~RvWDlRtgr~im~------------------------------------------------------------------  340 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMF------------------------------------------------------------------  340 (459)
T ss_pred             hheeecccCcEEEE------------------------------------------------------------------
Confidence            99999877643222                                                                  


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                                                                  +        .+|..+|.+++|+|+|..|+||+.|++
T Consensus       341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence                                                        1        389999999999999999999999999


Q ss_pred             EEEEECCCCCeeeeEecC-cceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~  575 (764)
                      ++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++++|...++.+++.+.||.+.|.++..++|+++++|+
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            999999999988888777 7889999999 78899999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEE
Q 004270          576 GMDGSLRIWD  585 (764)
Q Consensus       576 s~dg~i~iwd  585 (764)
                      +.|.++++|.
T Consensus       449 s~DRT~KLW~  458 (459)
T KOG0272|consen  449 SFDRTIKLWR  458 (459)
T ss_pred             ccCceeeecc
Confidence            9999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.3e-40  Score=329.46  Aligned_cols=546  Identities=17%  Similarity=0.211  Sum_probs=394.1

Q ss_pred             cCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeE---EEEECCe---EEEEecCc---
Q 004270           14 TSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNH---IAVVKRAH---   84 (764)
Q Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~---~~a~g~~---i~vw~~~~---   84 (764)
                      ++.+|-.... +...+++++.+.+|.+||..+-..+..+++|.++|+|+.+-|...   ++.+|+.   |.+|....   
T Consensus        13 c~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~   91 (764)
T KOG1063|consen   13 CNRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL   91 (764)
T ss_pred             cccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe
Confidence            3556655444 556678888899999999999888888899999999999988866   5555543   99998652   


Q ss_pred             -eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccc--cEEEEeCCCCCCEEEEEeCCC
Q 004270           85 -QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--PTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        85 -~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~l~~~~~dg  161 (764)
                       .+.++.+|...+.++.-.-......+.|+++.+||.+..+...  ...+.+..+..  .+.++.|+...-.++.|+.+.
T Consensus        92 ~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~  169 (764)
T KOG1063|consen   92 IKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF  169 (764)
T ss_pred             EEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcce
Confidence             3455788888777776433333333679999999996655211  22333333222  233345533213566777788


Q ss_pred             cEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCCCC---EEEEEEcCCeEEEEEccCCc----------------------
Q 004270          162 SLQLWNIS--TKKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE----------------------  214 (764)
Q Consensus       162 ~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~----------------------  214 (764)
                      .|.++.-.  ..+.+..+.||.+.|.+++|...+.   +||+++.|..|+||.+.-+.                      
T Consensus       170 ~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~  249 (764)
T KOG1063|consen  170 VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI  249 (764)
T ss_pred             EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence            88888644  3467888999999999999987654   89999999999999876322                      


Q ss_pred             --eEE------EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeee----cccccCeeEEEEecCC
Q 004270          215 --ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANE  280 (764)
Q Consensus       215 --~~~------~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~----~~h~~~v~~l~~~~~~  280 (764)
                        .+.      .+..+|...|.++.|+|.+. .|.+++.|.++.+|...+.  --+...+    .+......+..|+|++
T Consensus       250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~  328 (764)
T KOG1063|consen  250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS  328 (764)
T ss_pred             eeeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence              111      12246789999999999997 6888999999999987654  2222222    1334568899999999


Q ss_pred             CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  360 (764)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  360 (764)
                      +.+++-+..|..++|. ......+.......||.+.|..++|+|.|.+|++.|.|.+-|+|-.-..+..           
T Consensus       329 ~~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-----------  396 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-----------  396 (764)
T ss_pred             CEEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-----------
Confidence            9999999999999997 3333445666777899999999999999999999999999999864311100           


Q ss_pred             HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270          361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  440 (764)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  440 (764)
                                                                           -|.+..++-|....+|+++-+....++
T Consensus       397 -----------------------------------------------------wHEiaRPQiHGyDl~c~~~vn~~~~FV  423 (764)
T KOG1063|consen  397 -----------------------------------------------------WHEIARPQIHGYDLTCLSFVNEDLQFV  423 (764)
T ss_pred             -----------------------------------------------------eeeecccccccccceeeehccCCceee
Confidence                                                                 122222233444555555555444444


Q ss_pred             EEecCCcEEEEECc-------------------------------------------CCcc----c--------ceecC-
Q 004270          441 LGTAGGWIERFNLQ-------------------------------------------SGIS----R--------GSYLD-  464 (764)
Q Consensus       441 ~g~~~g~i~i~~~~-------------------------------------------~~~~----~--------~~~~~-  464 (764)
                      +|.....+++|+..                                           +|..    .        ..+.. 
T Consensus       424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP  503 (764)
T KOG1063|consen  424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP  503 (764)
T ss_pred             ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence            44444555555432                                           1111    0        00000 


Q ss_pred             ------------ccccccccccCcEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCeeeeEecC-cceEEEEEeec
Q 004270          465 ------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV  526 (764)
Q Consensus       465 ------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~  526 (764)
                                  +....+++|...|.+++.+|+++++++++...     .|++|+..+-.....+..| -.|+.++||||
T Consensus       504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd  583 (764)
T KOG1063|consen  504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD  583 (764)
T ss_pred             ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence                        00115689999999999999999999998643     5999999988888877766 79999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeE----EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--ceE---EEEee
Q 004270          527 NGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHV  597 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~----~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~--~~~---~~~~~  597 (764)
                      +++|++.+.|.++.+|.......    ....+.|+.-|.+..|+||+.+++|+|.|.+|+||..+.+  +.+   ..+++
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~  663 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF  663 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence            99999999999999998754322    2336789999999999999999999999999999999887  433   44566


Q ss_pred             CCceEEEEEcC-----CCCeEEEEEeCCCeEEEEecc
Q 004270          598 DVSITALSLSP-----NMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       598 ~~~v~~l~~sp-----~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ..+|+++++.|     .+..++.|-..| -|++|+.+
T Consensus       664 ~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~  699 (764)
T KOG1063|consen  664 SLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK  699 (764)
T ss_pred             CCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence            77899999987     233667777777 49999965

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.4e-42  Score=303.99  Aligned_cols=286  Identities=19%  Similarity=0.351  Sum_probs=262.1

Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (764)
Q Consensus       174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd  253 (764)
                      .+++++|.+.|.++.|++|.++|++++.||.+.|||.-+...+..+... ...|..++|+|.|+ ++|.|+.|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSGN-FVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCCC-eEEecCcCceeEEEe
Confidence            3789999999999999999999999999999999999999988888877 78999999999999 999999999999999


Q ss_pred             CCCc------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CC
Q 004270          254 LEKR------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG  326 (764)
Q Consensus       254 ~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~  326 (764)
                      +.+.      +....+. +|.+.+.++.|.+|+ .|+|++.|.+..+||+++.    ..+..+.||.+.|.++.++| ++
T Consensus       126 ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             cccccccccceeeeeec-CccceeEEEEEcCCC-ceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCC
Confidence            9865      3344455 999999999999865 7899999999999999887    67888899999999999999 99


Q ss_pred             CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      +.+++|+-|++.++||++.+..                                                          
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c----------------------------------------------------------  221 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQC----------------------------------------------------------  221 (343)
T ss_pred             CeEEecccccceeeeeccCcce----------------------------------------------------------
Confidence            9999999999888888765432                                                          


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                                                                          .+.|        .+|...|+++.|.|+|
T Consensus       222 ----------------------------------------------------~qtF--------~ghesDINsv~ffP~G  241 (343)
T KOG0286|consen  222 ----------------------------------------------------VQTF--------EGHESDINSVRFFPSG  241 (343)
T ss_pred             ----------------------------------------------------eEee--------cccccccceEEEccCC
Confidence                                                                2233        3899999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                      .-+++|+.|++.++||++..+.+..+.+.   .+|++++||..|++|.+|..|.++.|||.-.++.+..+.||.++|+++
T Consensus       242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL  321 (343)
T ss_pred             CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence            99999999999999999999999998876   789999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEE
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ..+|||.-|+|||.|.++|||.
T Consensus       322 ~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCcEEEecchhHheeecC
Confidence            9999999999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=317.47  Aligned_cols=471  Identities=17%  Similarity=0.209  Sum_probs=341.8

Q ss_pred             ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      +..|+.+|.++.+  -..+++++-..|.|.|||.++..+    ++.++.....+.++.|-+-.  +.+++|+.|..|++|
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence            5568999999886  578999999999999999999988    89999999999999998888  899999999999999


Q ss_pred             eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      |.++++.++.|..|.+-|.|++.+|...++++++.|-.|++||.+.+- +.++|.+ |..-|.+++|.|.....+|+++-
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cceEEEEEEecCCCccceeeeec
Confidence            999999999999999999999999999999999999999999998765 4455544 58899999999988889999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCC--CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      |++|++|.+.+..+..++. +|...|+++.|.+.|  ++|++|+.|.+++|||+.+.    .+++++.||...|..+.|+
T Consensus       162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh  236 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH  236 (794)
T ss_pred             cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence            9999999999999999999 999999999998854  79999999999999999887    7899999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      |.-..+++|+.||++|+|...+-+....+..+.                 ..+=++..     ......++.+.+.+.+.
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-----------------eRvW~I~~-----~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-----------------ERVWCIAA-----HKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehhhhhhcCC-----------------ceEEEEee-----cCCCCeEEEeccCCcEE
Confidence            999999999999999999987766555443210                 00000000     00011122222222221


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccc-----cccccccCcEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV  478 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~  478 (764)
                      +-                 -......+..++.|+.+.+....  |.--++.+-.......+...     ..+....-...
T Consensus       295 v~-----------------lgreeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq  355 (794)
T KOG0276|consen  295 VK-----------------LGREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ  355 (794)
T ss_pred             EE-----------------ccCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence            10                 00122234445555544443222  11111111100000000000     00001111234


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~  558 (764)
                      .++.+|+|+.++.|+ ||.-.||..-.    ..-+.-+.-....|++|.+..|+-..++.|.++  +.++..+.+...-.
T Consensus       356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~  428 (794)
T KOG0276|consen  356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS  428 (794)
T ss_pred             HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence            577889998766655 68888876211    111223556778899998889998889999988  56666555542211


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                          ..+--.|.+|...+ ++.+++||..++++++.+...  ...+.|+.+|.+++.++.++  .|+..+
T Consensus       429 ----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~S--fyil~~  489 (794)
T KOG0276|consen  429 ----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDS--FYILKF  489 (794)
T ss_pred             ----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCc--eeEEEe
Confidence                11122344555544 667999999999999998653  46899999999999999886  555443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-40  Score=323.45  Aligned_cols=485  Identities=16%  Similarity=0.233  Sum_probs=366.4

Q ss_pred             cCCeEEEEEEeC--CeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCe----EEEEecCceEEE-ecccccc
Q 004270           24 LGTENFVTVSVG--KAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK   95 (764)
Q Consensus        24 ~~~~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~----i~vw~~~~~~~~-~~~h~~~   95 (764)
                      ++++|++++-.|  ..++||++..-.++..+..|.-.++|++|+|.+.|+.+ |.+    |.+|+....+.. -..-...
T Consensus        88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~  167 (1080)
T KOG1408|consen   88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV  167 (1080)
T ss_pred             CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence            899999999865  45999999999999999999999999999999999886 444    777875433322 3445667


Q ss_pred             eEEEEE--eCCEEEEEecCCcEEEEEccCCcccccce---------eeEec--------CCc--cccEEE----------
Q 004270           96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------DDK--FTPTCI----------  144 (764)
Q Consensus        96 v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~---------~~~~~--------~~~--~~~~~~----------  144 (764)
                      |.+++|  ||.|+++.+ ...|++|.++.+.....++         ..+..        ..+  ...+.+          
T Consensus       168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF  246 (1080)
T KOG1408|consen  168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF  246 (1080)
T ss_pred             EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence            888888  799999988 7889999998776321111         00000        000  000111          


Q ss_pred             -------------------EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-C-----------------------C
Q 004270          145 -------------------MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W-----------------------G  181 (764)
Q Consensus       145 -------------------~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h-----------------------~  181 (764)
                                         +.-+.  ++|++|+.+|.|++++..+...+.++.. |                       -
T Consensus       247 SsRRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f  324 (1080)
T KOG1408|consen  247 SSRRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF  324 (1080)
T ss_pred             chhhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence                               11123  5799999999999999887655444321 1                       0


Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE---EEeccCCCCEEEEEEee------------CCCCEEEEEeCC
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSS------------DGQPLLASGASS  246 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~------------d~~~~l~sg~~d  246 (764)
                      -...++.|+|..+.|.+...|..++|||++.-+.+.   .+..| ...|..+.--|            .+  -+++++.|
T Consensus       325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH-S~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD  401 (1080)
T KOG1408|consen  325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH-SACIWDVENLPCNVHSPTAACLPRG--CFTTCSSD  401 (1080)
T ss_pred             CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec-cceeeeeccccccccCcccccCCcc--ceeEecCC
Confidence            123467899999999999999999999998654332   22222 45566655443            23  48899999


Q ss_pred             CcEEEEECCCceeeeeee------------------------------------cccccCeeEEEEecCCCEEEEEcCCC
Q 004270          247 GVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASADN  290 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~------------------------------------~~h~~~v~~l~~~~~~~~l~s~~~d~  290 (764)
                      ++|++||+..+..-..+.                                    ......+.+++.+|++++|++|..-|
T Consensus       402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG  481 (1080)
T ss_pred             CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence            999999997631111100                                    01234689999999999999999999


Q ss_pred             cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec---CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      .++||++...    +.......|...|.|+.|+.   ..++|++++.|+.|.+||+...-.                   
T Consensus       482 nlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-------------------  538 (1080)
T KOG1408|consen  482 NLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-------------------  538 (1080)
T ss_pred             ceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-------------------
Confidence            9999998765    55667789999999999986   457899999999999999864321                   


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecC
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAG  445 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~  445 (764)
                                                                      .+....+|...|+++.|...|  ..+++.+.|
T Consensus       539 ------------------------------------------------l~qtld~HSssITsvKFa~~gln~~MiscGAD  570 (1080)
T KOG1408|consen  539 ------------------------------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCGAD  570 (1080)
T ss_pred             ------------------------------------------------hhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence                                                            122334677999999998888  678888888


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEE
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI  521 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~  521 (764)
                      ..|.+-..+.......+...   ........+..++++|..+++++++.|..|+||++.+++..+.++..    +....+
T Consensus       571 ksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv  647 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV  647 (1080)
T ss_pred             hhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence            87765444422222222200   00122457889999999999999999999999999999999999754    678899


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      ...|.|.|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|-+.|++++.||.|.||.++.
T Consensus       648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.4e-40  Score=302.48  Aligned_cols=341  Identities=21%  Similarity=0.300  Sum_probs=299.3

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      .-+.+|..|...|.+++.+|+.+++|+|+.|..-.+|++.++.....+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence            456788999999999999999999999999999999999999988888776 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      |...++.....+. ..-+.+.=+.|+|.+..|+.|+.||.+-+|.+...    ...+.+.||..++++-.|.|+|+.+++
T Consensus       133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence            9999998888886 56677888999999999999999999999988765    567788899999999999999999999


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      +..||+|++|+..++++...+.+.                                                        
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~--------------------------------------------------------  231 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQA--------------------------------------------------------  231 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence            999999999999988765554331                                                        


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE---CCCCCE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTL  488 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~  488 (764)
                                 ......++.++..+..++.|..++.+++.+..+|+.+.......+.....+...+.++.+   +..-.+
T Consensus       232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL  300 (399)
T ss_pred             -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence                       124566778888888899999999999988888888776653222222345555555554   445578


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      .|+|+.||+|.|||+...+++....+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|+
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            8999999999999999999999999999999999998 899999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcC
Q 004270          569 GKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~  587 (764)
                      +++++|+|.|++.+|++++
T Consensus       380 ~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  380 KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CcEEEEecCCCeEEEEecC
Confidence            9999999999999999876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-40  Score=293.61  Aligned_cols=290  Identities=18%  Similarity=0.318  Sum_probs=263.1

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      .+.++.|...+..+-|+++.  ++|++++.||.+.|||.-|...++.++-....|..++|+|.|+++|+|+-|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            36778888888899999999  8999999999999999999999999998899999999999999999999999999999


Q ss_pred             ccCC--c---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEE
Q 004270          210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (764)
Q Consensus       210 ~~~~--~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l  283 (764)
                      +.+.  +   .+.....+|.+-+.|+.|.+|+.  |++++.|.+..+||+++++.+..+. +|.+.|.+++++| +++.+
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence            9865  2   23333345589999999999775  8899999999999999999999999 9999999999999 89999


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      ++|+-|++.++||++.+    ...+.+.+|...|++++|.|+|.-+++|+.|++.|+||++.+++...++..        
T Consensus       203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~--------  270 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD--------  270 (343)
T ss_pred             EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence            99999999999998876    688899999999999999999999999999999999999987766554321        


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                                .....|++++||..|++|++|+
T Consensus       271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence                                                                      1237899999999999999999


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      .|.++.+||.-.++....+.        +|...|+++..+|||..+++|+.|.++|||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999988885        9999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-39  Score=282.44  Aligned_cols=290  Identities=14%  Similarity=0.318  Sum_probs=254.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (764)
Q Consensus       237 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (764)
                      .-+|++++.|.+|++|...+|.+..+++ ...+.|+.+...|+++.|++++. ..||+||+++...  .++..+.+|...
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTKN   85 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCCc
Confidence            3489999999999999999999999998 55779999999999999998875 5699999987754  477888999999


Q ss_pred             CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       317 v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      |+.+.|..+|+.+++|++||+++|||++.....+.+                                            
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--------------------------------------------  121 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--------------------------------------------  121 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--------------------------------------------
Confidence            999999999999999999999999999875544443                                            


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (764)
                                               .+..+|+++.+.|+...|++|..+|.|++||+........+.       ......
T Consensus       122 -------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~~  169 (311)
T KOG0315|consen  122 -------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDTS  169 (311)
T ss_pred             -------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCcc
Confidence                                     234899999999999999999999999999999887766664       255678


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCe------eeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC-e
Q 004270          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-R  548 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~  548 (764)
                      |.++.+.|||.+++.+...|..++|++-+.+.      +..++.+ ..+..+.+|||+++||+++.|.+++||+.++. +
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            99999999999999999999999999876543      3334433 78999999999999999999999999999988 7


Q ss_pred             EEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEE
Q 004270          549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL  606 (764)
Q Consensus       549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~  606 (764)
                      ....+++|...+.+.+||.||+||+||+.|+.+++||++.++.++.+.+|- +..+++.
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            778899999999999999999999999999999999999999999987654 4666655

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-39  Score=307.16  Aligned_cols=325  Identities=23%  Similarity=0.373  Sum_probs=277.7

Q ss_pred             cCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCC--c--eEEEEe---------ccCCCCEEEEEEeeCCCCEEEEE
Q 004270          178 KGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYD--E--ELVTFT---------HSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~--~--~~~~~~---------~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      ..|..+|.+++|+|-.. .+++|+.|-..++|++...  .  ....++         ......|++++|+.+|. +||+|
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG  253 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATG  253 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEe
Confidence            34999999999999877 8999999999999999741  1  111111         11235799999999999 99999


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      +.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++    .....+.-|..+-..+.|-
T Consensus       254 ~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  254 SEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             ecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEEe
Confidence            99999999996 566677776 79999999999999999999999999999987665    4555566777776777776


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      .+ ..+++++.|+.|+++.+...                                                         
T Consensus       328 ~~-~~F~ts~td~~i~V~kv~~~---------------------------------------------------------  349 (524)
T KOG0273|consen  328 SN-DEFATSSTDGCIHVCKVGED---------------------------------------------------------  349 (524)
T ss_pred             cC-ceEeecCCCceEEEEEecCC---------------------------------------------------------
Confidence            43 45777788888877766432                                                         


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                                                           .+..++        .+|.+.|.++.|+
T Consensus       350 -----------------------------------------------------~P~~t~--------~GH~g~V~alk~n  368 (524)
T KOG0273|consen  350 -----------------------------------------------------RPVKTF--------IGHHGEVNALKWN  368 (524)
T ss_pred             -----------------------------------------------------Ccceee--------ecccCceEEEEEC
Confidence                                                                 222233        3899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC---------CEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRKF  553 (764)
Q Consensus       484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~d~~i~v~d~~~~~~~~~~  553 (764)
                      |.+.+|++++.|+++++|+.........+..+ ..|..+.|+|.|         ..+++++.|++|++||+..+.++..|
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f  448 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL  448 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence            99999999999999999999888888877766 789999999965         48999999999999999999999999


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ..|+.+|.+++|||+|+|||+|+.||.|.+|+++++++++.+.....|..++|+.+|++|..+-.|+ .+++-+++
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr  523 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR  523 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 58887765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=5.4e-37  Score=292.57  Aligned_cols=518  Identities=16%  Similarity=0.193  Sum_probs=389.2

Q ss_pred             eeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe-----------E
Q 004270            9 AIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------I   77 (764)
Q Consensus         9 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~-----------i   77 (764)
                      +.||-.-.+.-++.+.....++.. ......+||++...+.+.. +|...|.||+++||...+|+|..           +
T Consensus        59 vygYRG~dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv  136 (626)
T KOG2106|consen   59 VYGYRGVDCRNNLYLLPTGELVYF-VAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV  136 (626)
T ss_pred             EEeecceeeeceeEEccCccEEEE-eccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence            345533445555555444444433 3467788998775555444 79999999999999999997542           9


Q ss_pred             EEEecCce--EEEecccccceEEEEEe----CCEEEEEec--CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC
Q 004270           78 AVVKRAHQ--VATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT  149 (764)
Q Consensus        78 ~vw~~~~~--~~~~~~h~~~v~~l~~~----g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  149 (764)
                      ++||.-+.  +..+..-...|++++|.    |.+|+..+.  +..+.|||.+.+..    ....+..+..+..+.|||..
T Consensus       137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd  212 (626)
T KOG2106|consen  137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTD  212 (626)
T ss_pred             eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCC
Confidence            99996543  45566777889999983    777777764  33489999998877    56666677888889999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEE---EcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC
Q 004270          150 YLNKVIVGSQEGSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG  225 (764)
Q Consensus       150 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~  225 (764)
                      .  .+++....|.+..|+.+.+.+...   |+.+ ..-|.|++|.++|+ +++|.++|.|.||+..+.+..++.. .|.+
T Consensus       213 ~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~g  288 (626)
T KOG2106|consen  213 P--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDG  288 (626)
T ss_pred             C--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCC
Confidence            4  455555668899999988866554   4333 46799999999987 6789999999999998888777777 5699


Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (764)
                      .|.+++...+|.  |++|+.|..|..|| ..-+.+...+ ....++|..++-..  .-|+.|...+.|-.=.++..    
T Consensus       289 gv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~----  359 (626)
T KOG2106|consen  289 GVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNFILQGTLENG----  359 (626)
T ss_pred             ceEEEEEecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCC--CcEEEeeccceEEEeeecCC----
Confidence            999999999997  56699999999999 3333222222 23456777766433  33777777777665554443    


Q ss_pred             eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                       ......+|......++.+|+...+++++.|+.+++|+  ..+..                                   
T Consensus       360 -f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~-----------------------------------  401 (626)
T KOG2106|consen  360 -FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE-----------------------------------  401 (626)
T ss_pred             -ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee-----------------------------------
Confidence             3334458999999999999999999999999999999  11111                                   


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (764)
                                          |..              ....++.++.|+|.| .+++|+..|...+.|.++...+.... 
T Consensus       402 --------------------wt~--------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-  445 (626)
T KOG2106|consen  402 --------------------WTK--------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-  445 (626)
T ss_pred             --------------------EEE--------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-
Confidence                                110              112788999999999 99999999999999999865555432 


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeee-E-ec-CcceEEEEEeecCCEEEEEeCCCeEEE
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV-GCSLVKIVYHRVNGLLATVADDLVIRL  541 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-~~-~~~i~~~~~s~~~~~la~~~~d~~i~v  541 (764)
                             . ..+++.++|+|+|.+||.|+.|+.|++|.++....... . .+ ..+|+.+.||+|++++.+.+.|-.|..
T Consensus       446 -------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  446 -------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             -------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence                   3 78999999999999999999999999999875543322 2 11 289999999999999999999999999


Q ss_pred             EEccCCeEEEE--------------e----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE---EEEeeCCc
Q 004270          542 FDVVALRMVRK--------------F----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---DAIHVDVS  600 (764)
Q Consensus       542 ~d~~~~~~~~~--------------~----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~  600 (764)
                      |....-+.+..              |    ..|...|..++-+.+.+++|+|...|.|++|..+-.+..   ..+.+|+.
T Consensus       518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~  597 (626)
T KOG2106|consen  518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS  597 (626)
T ss_pred             EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence            94332211111              1    135566888888999999999999999999998755443   34455555


Q ss_pred             -eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          601 -ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       601 -v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                       |++++|+-+...|++.+.|. +|..|++
T Consensus       598 ~vt~V~Fl~~d~~li~tg~D~-Si~qW~l  625 (626)
T KOG2106|consen  598 HVTNVAFLCKDSHLISTGKDT-SIMQWRL  625 (626)
T ss_pred             eeEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence             99999999999999998887 7999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.4e-39  Score=279.03  Aligned_cols=295  Identities=17%  Similarity=0.255  Sum_probs=254.9

Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCe
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI  271 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v  271 (764)
                      -+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++.  ++.++. +|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence            47899999999999999999999999876 88999999999999 777776 4689999999875  567777 999999


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~  351 (764)
                      +++.|..+|+++++||.||+++|||++..    .+.+. ..|..+|+++..+|+...|++|..+|.|++||+.......+
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~----~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSL----SCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCc----ccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            99999999999999999999999999874    22232 36789999999999999999999999999999987765544


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                      +..                                                                   .....+.+++
T Consensus       162 liP-------------------------------------------------------------------e~~~~i~sl~  174 (311)
T KOG0315|consen  162 LIP-------------------------------------------------------------------EDDTSIQSLT  174 (311)
T ss_pred             cCC-------------------------------------------------------------------CCCcceeeEE
Confidence            322                                                                   2337899999


Q ss_pred             EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-Ceee
Q 004270          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (764)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  510 (764)
                      +.|||.+++.+...|..++|++........+.  +....+.|.+.+....+||++++|++++.|.+++||+.++. +...
T Consensus       175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             EcCCCcEEEEecCCccEEEEEccCCCccccce--EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence            99999999999999999999998865544443  12234689999999999999999999999999999999988 4444


Q ss_pred             eEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc
Q 004270          511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (764)
Q Consensus       511 ~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s  566 (764)
                      .++.+ ..+..++||.||.||++|+.|+.+++||+..++.++...||.....+++..
T Consensus       253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            45544 789999999999999999999999999999999999999999888887764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-39  Score=283.26  Aligned_cols=299  Identities=17%  Similarity=0.271  Sum_probs=254.6

Q ss_pred             EEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCc
Q 004270           87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~  162 (764)
                      .++++|.+.|+.++.   +.+.|++++.|.++.+|++...... -.+++.+.+|..++..+++++++  ++.++++.|++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence            349999999999996   4789999999999999999876432 34578899999999999999999  89999999999


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCC-CCEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLL  240 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~-~~~l  240 (764)
                      +++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|.+||.. +.+..++..+. .+.|+|+.|+|+. +.++
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            9999999999999999999999999999999999999999999999987 45555555443 7899999999984 4599


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      ++++.|++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++...    .+..+ +|...|.++
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl  239 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSL  239 (315)
T ss_pred             EEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeE
Confidence            999999999999999999999998 999999999999999999999999999999998773    34444 789999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|+|+.-.|+. ..+..|+|||+.+.....++.......                                         
T Consensus       240 ~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~-----------------------------------------  277 (315)
T KOG0279|consen  240 CFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGP-----------------------------------------  277 (315)
T ss_pred             EecCCceeEee-ccCCceEEEeccchhhhhhcccccccc-----------------------------------------
Confidence            99998755554 445669999999888777764421100                                         


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                        ..........+++|+++|..|+.|..|+.|++|.+.
T Consensus       278 ------------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 ------------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ------------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                              000112456788999999999999999999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8e-38  Score=276.72  Aligned_cols=298  Identities=18%  Similarity=0.272  Sum_probs=256.6

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      ..+++.|.+.+...+..+.+. +.+++++.|.++.+|++.     .|..++.++||...|..++.++||++.++++.|+.
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~-~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNS-DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeecCCCceEEEEEeecCCC-ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            467788999999999888854 789999999999999764     57789999999999999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPV  282 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~  282 (764)
                      +++||+.+++..+.|.+| ...|.+++|++|++ .+++|+.|.+|++||.............|.+.|.++.|+|+  .++
T Consensus        87 lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGH-TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             EEEEEecCCcEEEEEEec-CCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            999999999999999876 78899999999999 89999999999999987766655555445889999999998  789


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      +++++.|++|++||++.-    ++...+.||.+.++.++++|||...++|+.||.+.+||++.++....+          
T Consensus       165 Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----------  230 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----------  230 (315)
T ss_pred             EEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----------
Confidence            999999999999998876    566777899999999999999999999999999999999887664443          


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                                 ++...|.+++|+|+.-.|+.+
T Consensus       231 -----------------------------------------------------------~a~~~v~sl~fspnrywL~~a  251 (315)
T KOG0279|consen  231 -----------------------------------------------------------EAFDIVNSLCFSPNRYWLCAA  251 (315)
T ss_pred             -----------------------------------------------------------cCCCeEeeEEecCCceeEeec
Confidence                                                                       234789999999998877777


Q ss_pred             ecCCcEEEEECcCCcccceecCccccc-cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ...+ |++||+.++..+..+....... .........+++|+++|..|+++-.|+.|++|.+.
T Consensus       252 t~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  252 TATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            6655 9999999999888775322211 22234456788999999999999999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.9e-37  Score=304.87  Aligned_cols=497  Identities=19%  Similarity=0.272  Sum_probs=359.5

Q ss_pred             ceEEEEEeCCeEEEEECC--eEEEEecCce--EEEecccccceEEEEE--eCC---EEEEEecCCcEEEEEccCCccccc
Q 004270           58 KIRALASYRDYTFAAYGN--HIAVVKRAHQ--VATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        58 ~I~~~~~~~~~~~~a~g~--~i~vw~~~~~--~~~~~~h~~~v~~l~~--~g~---~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      ++.+++-..-+..+|+|.  .|.+||..+.  +..+.||.++|+|+.+  ..+   ++++|+.||.|++|.+.....  .
T Consensus        15 R~~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~   92 (764)
T KOG1063|consen   15 RVPKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--I   92 (764)
T ss_pred             cccccccccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--E
Confidence            444443223344455544  4999998776  3339999999999996  333   899999999999999984333  2


Q ss_pred             ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCC--eEEEEEcCCC--CEEEEEEcC
Q 004270          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSS--ISSCVSSPAL--DVVAVGCSD  202 (764)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~~~~sp~~--~~la~g~~d  202 (764)
                      .+.+++.+..  ...+++...  ..+.+.+.|+.+.+||.+..+  +...+.-..+.  -.|+++.|+.  -.+|.|+.+
T Consensus        93 ~i~~~~g~~~--~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~  168 (764)
T KOG1063|consen   93 KIYTIQGHCK--ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSK  168 (764)
T ss_pred             EEEeecCcce--eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcc
Confidence            2445544222  233333322  233334789999999986555  33333322222  2455566632  356677888


Q ss_pred             CeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCC--CCEEEEEeCCCcEEEEECCCce--------------------
Q 004270          203 GKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR--------------------  258 (764)
Q Consensus       203 g~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~--~~~l~sg~~dg~i~iwd~~~~~--------------------  258 (764)
                      ..|.++.-.+++  .+..+.+ |...|.+++|...+  ..+|++++.|..|+||.+.-+.                    
T Consensus       169 ~~v~~~s~~~d~f~~v~el~G-H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f  247 (764)
T KOG1063|consen  169 FVVDLYSSSADSFARVAELEG-HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF  247 (764)
T ss_pred             eEEEEeccCCcceeEEEEeec-cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence            888888766553  3445545 48999999998654  4588999999999999864222                    


Q ss_pred             -ee---e------eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec---cCCCCCCeeEEEecC
Q 004270          259 -LQ---S------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCIRFYAN  325 (764)
Q Consensus       259 -~~---~------~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~  325 (764)
                       ..   .      .+..+|+..|.++.|+|.+..|++++.|.++.+|.-+...+.+...-.+   .|.........|+|+
T Consensus       248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n  327 (764)
T KOG1063|consen  248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN  327 (764)
T ss_pred             eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence             01   0      1113899999999999999999999999999999887776655443322   344556788999999


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      ++.+++-+.-|..++|.......                                                        |
T Consensus       328 ~~~ii~~g~~Gg~hlWkt~d~~~--------------------------------------------------------w  351 (764)
T KOG1063|consen  328 SNVIIAHGRTGGFHLWKTKDKTF--------------------------------------------------------W  351 (764)
T ss_pred             CCEEEEecccCcEEEEeccCccc--------------------------------------------------------e
Confidence            99999999999999998322110                                                        1


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                      .         ......+|...|+.++|+|.|.++++.+.|-+-++|-.- |.... .  ......+-|...++|+++-+.
T Consensus       352 ~---------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-w--HEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  352 T---------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-W--HEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             e---------eccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-e--eeecccccccccceeeehccC
Confidence            1         112234777999999999999999999999999998765 22211 1  111122478999999999986


Q ss_pred             CCEEEEEeCCCeEEEEECCCC--------------------------------C--------------------------
Q 004270          486 NTLMISAGYHGDIKVWDFKGR--------------------------------D--------------------------  507 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~--------------------------------~--------------------------  507 (764)
                      ...+++|.....+|+|+....                                +                          
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            777899999999999975321                                0                          


Q ss_pred             -------------------eeeeEecCcceEEEEEeecCCEEEEEeCC-----CeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          508 -------------------LKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       508 -------------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                                         ..+.+.|...|.+++.+|+++++|+++..     ..|++|+..+...+..+.+|.-.|+.|
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                               00011123679999999999999999864     479999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcCccce----EEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~  631 (764)
                      +|||||+||++++.|.++.+|....+..    .+..+.|.. |.+..|+|++.++||++.|. .|++|.....
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~~  650 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPDL  650 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccCc
Confidence            9999999999999999999999864322    233455666 99999999999999999999 6999997644

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=300.28  Aligned_cols=542  Identities=15%  Similarity=0.206  Sum_probs=404.7

Q ss_pred             eeeeeecCCCcceEEe-cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCeEEEEecCce
Q 004270            8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ   85 (764)
Q Consensus         8 r~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~i~vw~~~~~   85 (764)
                      +.++. +..+|-.+.. ......+.+..++.|.+|--.+ ....+...|...|.-+..-.+...... .+.+.||+....
T Consensus        67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~  144 (910)
T KOG1539|consen   67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI  144 (910)
T ss_pred             EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence            34443 4455544433 2233444445577888875332 455566677889999988888777655 445999986441


Q ss_pred             ---EE---E-ecccccceEEEE-Ee--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEE
Q 004270           86 ---VA---T-WSRHSAKVNLLL-LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI  155 (764)
Q Consensus        86 ---~~---~-~~~h~~~v~~l~-~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~  155 (764)
                         +.   + ++...+-|+++. |.  =+.++.|+.+|.+.+|++.+++.    +.+++.....+.++.-+|.-  ..++
T Consensus       145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaL--DVVa  218 (910)
T KOG1539|consen  145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPAL--DVVA  218 (910)
T ss_pred             cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcc--eEEE
Confidence               11   1 222223377776 32  46788899999999999999999    77877777666555556655  8999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee
Q 004270          156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS  234 (764)
Q Consensus       156 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~  234 (764)
                      +|..+|+|.++|++.++.+.+|+...++|++++|..||. .+|+|+..|.+.+||++..+........|.+.|..+.|.|
T Consensus       219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence            999999999999999999999997679999999999996 5677778899999999998888888877789999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEe-cCCCEEEEEcCCCcEEEEEecCCCCCceeeE-
Q 004270          235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR-  308 (764)
Q Consensus       235 d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-  308 (764)
                      ... ++++++.|+.+++|=.+++    +.+.. +.||..+..++.|. .++..+.+++.|++.+.+++........+.. 
T Consensus       299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             CCc-eEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            777 9999999999988855543    33333 35999999999998 6788999999999999887643211111111 


Q ss_pred             -------------eccCCCCCCeeEEEec-----CCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhh
Q 004270          309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       309 -------------~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~  369 (764)
                                   ...---.+|..+++..     ..+.+...-.+...+.|+.+....-+ .+......+          
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~----------  446 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK----------  446 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc----------
Confidence                         0111224666666654     12345555567889999987765422 111110000          


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                        -...++++..     ..-.+.+..+...+.+.+|+++.+.. ...+...+.|..+|+.++...-++.+++++.+|.+.
T Consensus       447 --~~~~~~av~v-----s~CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  447 --DDINATAVCV-----SFCGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             --cCcceEEEEE-----eccCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence              0001111111     11124567788899999999998765 334444567889999999999999999999999999


Q ss_pred             EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCC
Q 004270          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  528 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~  528 (764)
                      .||.........+         .-...+.++..+.....++.+..|-.|+++|..+.+..+.+.++ ..|+.++|||||+
T Consensus       519 fw~f~~k~l~~~l---------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  519 FWDFKKKVLKKSL---------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EEecCCcceeeee---------ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            9999998877666         34567788888888889999999999999999999999999855 8999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEEEcC
Q 004270          529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI  587 (764)
Q Consensus       529 ~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iwd~~  587 (764)
                      +|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+|||+..| .-|++|.=.
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            99999999999999999999988876 45788999999999999999988 569999643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-37  Score=294.18  Aligned_cols=341  Identities=16%  Similarity=0.230  Sum_probs=289.4

Q ss_pred             eEEEecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCccccc---cee-------eEecCCccccEEEEeCCCCC
Q 004270           85 QVATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLA---PVG-------HVKLDDKFTPTCIMHPDTYL  151 (764)
Q Consensus        85 ~~~~~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~p~~~~  151 (764)
                      ...+..+|+.+|.+.+++   ...|++++.|.+.++|++....-...   .++       .-......+.+++++.+|  
T Consensus       170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G--  247 (524)
T KOG0273|consen  170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG--  247 (524)
T ss_pred             cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--
Confidence            344444599999999974   44889999999999999975111000   011       011234567888899999  


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      +.|++|+.+|.+++|+. +|.++.++..|.++|.++.|+..|.+|++++.||++.+||..++...+.+..+ ..+-..+.
T Consensus       248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s~~~lDVd  325 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-SAPALDVD  325 (524)
T ss_pred             CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec-cCCccceE
Confidence            89999999999999995 88999999999999999999999999999999999999999999999998876 56667889


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS  311 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  311 (764)
                      |..+..  +++++.||.|+++.+...+++.++. +|.++|.++.|.|.+.+|++++.|+++++|.....    .....+.
T Consensus       326 W~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----~~~~~l~  398 (524)
T KOG0273|consen  326 WQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----NSVHDLQ  398 (524)
T ss_pred             EecCce--EeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----cchhhhh
Confidence            987765  8899999999999999999999999 79999999999999999999999999999976544    4667778


Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      +|...|..+.|+|+|..      +     |+.                                                
T Consensus       399 ~Hskei~t~~wsp~g~v------~-----~n~------------------------------------------------  419 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPV------T-----SNP------------------------------------------------  419 (524)
T ss_pred             hhccceeeEeecCCCCc------c-----CCC------------------------------------------------
Confidence            99999999999997631      0     000                                                


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                                                                ..+..++.++.|++|++||+..+.++..+.        
T Consensus       420 ------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~--------  449 (524)
T KOG0273|consen  420 ------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM--------  449 (524)
T ss_pred             ------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeec--------
Confidence                                                      023456666777788888888888888775        


Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      .|..+|.+++|+|+|+++++|+.||.|.+|+.+++++.+.+...+.|..++|+.+|.+|.++..|+.+++.|++
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=279.50  Aligned_cols=340  Identities=19%  Similarity=0.270  Sum_probs=289.4

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      +.++..|...+..+.++|+.  +.+++|+.|..-.+|++.+|.....+.+|...|+++.||.+|.+||+|..+|.|+||.
T Consensus        57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            56777788999999999955  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                      ..++.....+... -..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus       135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence            9999999888754 56799999999888 99999999999999999988888888 999999999999999999999999


Q ss_pred             CcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchh
Q 004270          290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (764)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (764)
                      |+|++|+..+..    ++.... ....+..++.++..+..++.|..++.+.+-+..+++.........            
T Consensus       212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------  275 (399)
T KOG0296|consen  212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------  275 (399)
T ss_pred             ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence            999999887663    332222 234567788899899999999999999888776655433322100            


Q ss_pred             hhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 004270          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (764)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i  448 (764)
                                                                   .+...........|.++.++..=.+.++|+-||+|
T Consensus       276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i  310 (399)
T KOG0296|consen  276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI  310 (399)
T ss_pred             ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence                                                         00000001112445555666666789999999999


Q ss_pred             EEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC
Q 004270          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN  527 (764)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~  527 (764)
                      .+||+.....+..+         .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++.++..| .+|.+++++|+.
T Consensus       311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~  380 (399)
T KOG0296|consen  311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK  380 (399)
T ss_pred             EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence            99999998888876         6899999999998 789999999999999999999999999888 899999999999


Q ss_pred             CEEEEEeCCCeEEEEEcc
Q 004270          528 GLLATVADDLVIRLFDVV  545 (764)
Q Consensus       528 ~~la~~~~d~~i~v~d~~  545 (764)
                      +++++++.|++.+||+..
T Consensus       381 ~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  381 RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cEEEEecCCCeEEEEecC
Confidence            999999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-34  Score=285.07  Aligned_cols=543  Identities=16%  Similarity=0.177  Sum_probs=394.1

Q ss_pred             CCCcceEEEEEeCCeEEEEECC---eEEEEecCce---EEEeccc-ccceEEEEE-eCCEEEEEecCCcEEEEEccCCcc
Q 004270           54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQ---VATWSRH-SAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEE  125 (764)
Q Consensus        54 ~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~~~---~~~~~~h-~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~  125 (764)
                      -.|.+|+|||++.+...+|.+.   .|.+|+....   ...+.|+ ...|.+++| +|.+|+|.+.+|.|.-||+.+.+.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence            3589999999998866666543   4999996432   3335555 568999998 599999999999999999999888


Q ss_pred             cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcCC
Q 004270          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG  203 (764)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~dg  203 (764)
                          ...++..++.+++++.+|.+  ..+++|+.||.+...++..++..+.  |....+.|.++.|+|++..|+.|+.||
T Consensus       103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence                67777788999999999999  8999999999888888888877654  445578999999999999999999999


Q ss_pred             eEEEEEccCCceEEEEe-------ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE
Q 004270          204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~-------~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~  276 (764)
                      .|++||+.++..+....       .....-|.++.|..++  .+++|...|+|.+||...+.++.... .|.+.|.+++.
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav  253 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV  253 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence            99999999998877322       1123457889998887  49999999999999999999999998 89999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchh
Q 004270          277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH  356 (764)
Q Consensus       277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  356 (764)
                      .+++..++++|.|+.|..+...+...++.....+..|...+.+++..++  .+++|+.|.++.+-........... +..
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~  330 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN  330 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence            9999999999999999999887776555566677889999999999977  8999999999888766542211111 000


Q ss_pred             hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee-----cceeecCCCCCCCCeEEEE
Q 004270          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-----GEHILRPCPENPTAVKACT  431 (764)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~~v~~~~  431 (764)
                      ....             .++...        .....+..-.....+.+|.+.....     ..+.+.........+.+.+
T Consensus       331 ~~p~-------------~~~v~~--------a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a  389 (691)
T KOG2048|consen  331 LFPA-------------SDRVSV--------APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA  389 (691)
T ss_pred             cccc-------------cceeec--------CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence            0000             000000        0001111122233344444443311     1333344445568899999


Q ss_pred             EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeee
Q 004270          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~  510 (764)
                      +||+|++++.++-. .+++|.++....+.....   ............+.|+-++..++.++ .+..+..+++.+.....
T Consensus       390 iSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke  465 (691)
T KOG2048|consen  390 ISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE  465 (691)
T ss_pred             cCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence            99999999998753 567777765322211110   00112334567788888888777777 77788888877654332


Q ss_pred             e--Eec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEE
Q 004270          511 R--WEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       511 ~--~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iw  584 (764)
                      .  +..   -..|..+..|++|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+..|+.+.-|
T Consensus       466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef  545 (691)
T KOG2048|consen  466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF  545 (691)
T ss_pred             hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence            2  222   26899999999999999999999999999998876554434457899999995 45678888899999999


Q ss_pred             EcCccceEEEEe------------eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270          585 DVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  634 (764)
Q Consensus       585 d~~~~~~~~~~~------------~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~  634 (764)
                      |++..++-+...            ....+..+.|+|............ -+++-+....+.+
T Consensus       546 di~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~~~lp~  606 (691)
T KOG2048|consen  546 DIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFSLPLPS  606 (691)
T ss_pred             ecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecCCCCCc
Confidence            995433221111            123488899998776665555444 4777776654443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-35  Score=298.51  Aligned_cols=500  Identities=14%  Similarity=0.170  Sum_probs=364.3

Q ss_pred             CCcceEEEEEeCCeEEEEEC---CeEEEEe--cCceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccc
Q 004270           55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL  127 (764)
Q Consensus        55 ~~~~I~~~~~~~~~~~~a~g---~~i~vw~--~~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~  127 (764)
                      ...++..++|+|..-++.++   +.|.+||  .+..+.++.+|.++|..+.|  .+..++||+.|-.|+||++.+.++  
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--   85 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--   85 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence            35678999999997777664   4499998  47788889999999999998  689999999999999999999999  


Q ss_pred             cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV  207 (764)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~i  207 (764)
                        +.++.+|...+.++.||+.-  ..|+++|.|.+|+|||..+++++..+.||..-|.|..|+|..+.+++++-|.+|+|
T Consensus        86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence              77788899999999999988  79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccC----------------------------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-
Q 004270          208 HNVRY----------------------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-  258 (764)
Q Consensus       208 wd~~~----------------------------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-  258 (764)
                      ||+..                            +..++....+|...|..++|+|.-. ++++|+.|..|++|.+...+ 
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence            99851                            1123334456688999999999988 99999999999999986553 


Q ss_pred             -eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       259 -~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                       .+.+.+ +|.+.|.++-|+|...++++.|.|++|+|||++..+    .+..++...+....++-+|..++++.|- |+-
T Consensus       241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAgH-DsG  314 (1202)
T KOG0292|consen  241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAGH-DSG  314 (1202)
T ss_pred             eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeeec-CCc
Confidence             345566 999999999999999999999999999999998874    4566666677889999999998666655 555


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee-ccee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI  416 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~  416 (764)
                      +.+|.+...+....+..                                   +.++..  .+..++.+|+.+.+- ....
T Consensus       315 m~VFkleRErpa~~v~~-----------------------------------n~LfYv--kd~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  315 MIVFKLERERPAYAVNG-----------------------------------NGLFYV--KDRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             eEEEEEcccCceEEEcC-----------------------------------CEEEEE--ccceEEeeeccccccceeEe
Confidence            88888875544333222                                   112222  267788888876332 2222


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (764)
                      ++.......++.++.++|..+.+++.+  .+|.-.++.+........-..   ..  ........+ |-..++..+---.
T Consensus       358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~---~~--~k~tG~~a~-fvarNrfavl~k~  431 (1202)
T KOG0292|consen  358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK---DV--KKGTGEGAL-FVARNRFAVLDKS  431 (1202)
T ss_pred             ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch---hh--hcCCCCceE-EEEecceEEEEec
Confidence            333333457889999999887666653  445666666654322111100   00  011111222 2222333332223


Q ss_pred             CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      +..+.+=++.+. ..+.+........+-+...|.+|+.  ....|.+||++..+.+..+.  ...|.-+.||+|..+++-
T Consensus       432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl  506 (1202)
T KOG0292|consen  432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL  506 (1202)
T ss_pred             CcceEEecccch-hhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence            445555554432 2222233334445555555655554  35689999999998888876  457889999999988876


Q ss_pred             EeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270          575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~  617 (764)
                      -+ -.+|.|.+.+ -+.+..+...-.|.+-+|..+|-++.++.
T Consensus       507 l~-Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~  547 (1202)
T KOG0292|consen  507 LS-KHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTL  547 (1202)
T ss_pred             cc-cceEEEEecc-hhheecchheeEeeeceeccCceEEEEeh
Confidence            66 4678888844 44555554444588888888887777665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-35  Score=288.24  Aligned_cols=463  Identities=14%  Similarity=0.208  Sum_probs=342.8

Q ss_pred             CCCCcceEEEEEeCCeEEEEE---CCeEEEEecCce--EEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcc
Q 004270           53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE  125 (764)
Q Consensus        53 ~~~~~~I~~~~~~~~~~~~a~---g~~i~vw~~~~~--~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~  125 (764)
                      ..+..+|.++.++|..-++.+   .++|.+|+..++  ++.+.-..-+|.+..|  -.+++++|+.|..|+|+++.+.+.
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            346789999999999666543   567999987554  5557777788888877  478999999999999999999999


Q ss_pred             cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCC
Q 004270          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDG  203 (764)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg  203 (764)
                          +..++.|...+.+++.||..  .+++++|.|-+|++||.+.. .+.++|.||..-|.+++|.|. .+.+|+++-|+
T Consensus        90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence                89999999999999999999  78999999999999999754 788999999999999999994 57999999999


Q ss_pred             eEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE
Q 004270          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  282 (764)
                      +|++|++.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||..+..++.++. +|...|..+.|+|.-++
T Consensus       164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI  241 (794)
T ss_pred             cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence            9999999999999999865 7889999998865 4599999999999999999999999999 99999999999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      +++|+.||++|+|+-.+-    ++...+.-....+.|++..+.++.++.|...|.+. ..+-.+.+...+.         
T Consensus       242 iisgsEDGTvriWhs~Ty----~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd---------  307 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKTY----KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMD---------  307 (794)
T ss_pred             EEEecCCccEEEecCcce----ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeec---------
Confidence            999999999999965443    55556666678899999999888888888777554 3443332222211         


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce-ee-cceeec----CCCCCCCCeEEEEEccCC
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF-VL-GEHILR----PCPENPTAVKACTISACG  436 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~-~~~~~~----~~~~~~~~v~~~~~s~~g  436 (764)
                                        ...      .-+-+.+..-..+.+-.+... .. ....+.    ....-.-....++.+|+|
T Consensus       308 ------------------~~g------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG  363 (794)
T KOG0276|consen  308 ------------------SNG------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG  363 (794)
T ss_pred             ------------------CCc------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence                              100      000011111111111110000 00 000000    000111234467889999


Q ss_pred             CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (764)
Q Consensus       437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  516 (764)
                      ++++++ .||.-.+|..-.-+             ..+.+.-....|.++....+.--.++.|+++  ++.+....+....
T Consensus       364 rfV~Vc-gdGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~  427 (794)
T KOG0276|consen  364 RFVVVC-GDGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM  427 (794)
T ss_pred             cEEEEe-cCccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence            988876 45666666532111             1344566778899997778888778999988  6666666665543


Q ss_pred             ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ...  .+  -|..|+....++.+++||.+++++++++.-.   ...+.|+.+|.+++.++.|. .++..
T Consensus       428 ~~e--~i--~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  428 SAE--GI--FGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             cee--ee--cCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence            311  11  2445555566778999999999999998743   35678999999888887654 44443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=261.95  Aligned_cols=293  Identities=18%  Similarity=0.308  Sum_probs=235.9

Q ss_pred             eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccC---CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      ..++.+++|.+.+..++|+|. |..||+++.|..|++|+...   -.+...+...|+..|++++|+|.|+ +|++|+.|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~   83 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA   83 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence            456788999999999999998 88999999999999999984   3345556667789999999999999 999999999


Q ss_pred             cEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       248 ~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      ++.||.-..+  +++.++. +|.+.|.+++|+++|++|++++.|++|-+|.++ .+.+..+...+.+|...|..+.|+|.
T Consensus        84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence            9999986654  6778888 999999999999999999999999999999988 45667889999999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      ..+|++++.|.+|++|+-..+                                                           
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~d-----------------------------------------------------------  182 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDD-----------------------------------------------------------  182 (312)
T ss_pred             cceeEEeccCCeEEEEeecCC-----------------------------------------------------------
Confidence            889999999999999985311                                                           


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                                    +.+..+.                  ++        .+|...|.+++|++.
T Consensus       183 ------------------------------ddW~c~~------------------tl--------~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  183 ------------------------------DDWECVQ------------------TL--------DGHENTVWSLAFDNI  206 (312)
T ss_pred             ------------------------------CCeeEEE------------------Ee--------cCccceEEEEEecCC
Confidence                                          1111111                  11        267778888888888


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC------eEEE-EeecCCC
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD  558 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~------~~~~-~~~~h~~  558 (764)
                      |..|++++.|++++||...+.   ....+...+..++|.  ...||+++.|+.|++|.....      +++. .-..|..
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~  281 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV  281 (312)
T ss_pred             CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence            888888888888888875421   111223566777776  667888888888888865532      1111 2346889


Q ss_pred             CeeEEEEcCC-CcEEEEEeCCCcEEEEEcC
Q 004270          559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       559 ~i~~l~~s~d-g~~l~s~s~dg~i~iwd~~  587 (764)
                      .|++++|.|. ...|++++.||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 6789999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-37  Score=280.31  Aligned_cols=289  Identities=21%  Similarity=0.337  Sum_probs=261.2

Q ss_pred             eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcE
Q 004270          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  338 (764)
                      +...+. +|..+|+.+-|+|+...+++++.|++|++||+.++    .+.+.++||...+..++|+..|+++++++.|=.+
T Consensus       100 l~~~l~-g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen  100 LVQKLA-GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             chhhhh-ccccceeeeeeccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            344444 79999999999999999999999999999998877    5688889999999999999999999999999999


Q ss_pred             EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (764)
Q Consensus       339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (764)
                      .+||..+....                                                                   +.
T Consensus       175 ~LWd~~~~~~c-------------------------------------------------------------------~k  187 (406)
T KOG0295|consen  175 KLWDFDTFFRC-------------------------------------------------------------------IK  187 (406)
T ss_pred             hheeHHHHHHH-------------------------------------------------------------------HH
Confidence            99997653111                                                                   11


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (764)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v  498 (764)
                      ...+|...|.+++|-|.|+++++++.|.+|+.|++.+|..+.++.        +|...|..++.+.||..+++++.|.+|
T Consensus       188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--------~h~ewvr~v~v~~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--------GHSEWVRMVRVNQDGTIIASCSNDQTL  259 (406)
T ss_pred             HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--------CchHhEEEEEecCCeeEEEecCCCceE
Confidence            122566889999999999999999999999999999999999996        999999999999999999999999999


Q ss_pred             EEEECCCCCeeeeEecC-cceEEEEEeec---------------CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270          499 KVWDFKGRDLKSRWEVG-CSLVKIVYHRV---------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (764)
Q Consensus       499 ~iwd~~~~~~~~~~~~~-~~i~~~~~s~~---------------~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~  562 (764)
                      ++|-+.++++...+..+ .++.+++|.|.               +.++.+++.|++|++||+.++.++.++.||.+.|..
T Consensus       260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            99999999888887655 78889988774               248999999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      ++|+|.|+||+++..|+++++||++++++...+..|.. ++++.|+.+-.+++||+.|. .+++|.-
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc  405 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC  405 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc-eeeeeec
Confidence            99999999999999999999999999999999987776 99999999999999999999 6999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.6e-37  Score=310.54  Aligned_cols=281  Identities=21%  Similarity=0.364  Sum_probs=242.0

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      -+.+++..-...++|..|++|+..||.|..|..|++|.+... .+..++..        ++-.    .+=+++.|-.+.+
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~  435 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhh
Confidence            356677666788999999999999999999999999998754 33333322        1111    1223444555777


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      .|-.+......+. +|.++|.++.|+|+.++|++++.|+++|+|.+++.    ..+....||..||..+.|+|-|-+++|
T Consensus       436 ~D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  436 LDDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFAT  510 (707)
T ss_pred             ccccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEe
Confidence            7777776677777 99999999999999999999999999999999887    566677799999999999999999999


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ++.|++.++|........                                                              
T Consensus       511 as~D~tArLWs~d~~~Pl--------------------------------------------------------------  528 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPL--------------------------------------------------------------  528 (707)
T ss_pred             cCCCceeeeeecccCCch--------------------------------------------------------------
Confidence            999999999986532211                                                              


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                                                                      +.+        .+|-+.|.|+.|+|+..++++
T Consensus       529 ------------------------------------------------Rif--------aghlsDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  529 ------------------------------------------------RIF--------AGHLSDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             ------------------------------------------------hhh--------cccccccceEEECCccccccc
Confidence                                                            111        389999999999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      ||.|.+||+||..+|..++.+.+| ++|++++|||+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||.
T Consensus       553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  553 GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN  632 (707)
T ss_pred             CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence            999999999999999999999877 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCc
Q 004270          571 WLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       571 ~l~s~s~dg~i~iwd~~~  588 (764)
                      .||+|+.|.+|++||+..
T Consensus       633 vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  633 VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEecCCCCeEEEEEchh
Confidence            999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-37  Score=279.87  Aligned_cols=307  Identities=20%  Similarity=0.351  Sum_probs=268.5

Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ...+.+.+.+|..+|+.+-|.|+-..+++++.|++|++||..+++....+++| ...+..++|+..|+ +|++++.|-.+
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~  174 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA  174 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence            44567778899999999999999999999999999999999999998888877 66799999999999 99999999999


Q ss_pred             EEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       250 ~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      .+||..+ .+++..+. +|...|.++.|.|.|.++++++.|++|+.|+++++    .++..+.+|...|..++.+.||..
T Consensus       175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence            9999987 45666666 89999999999999999999999999999999988    788999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      +++++.|.++++|-+.+..+..++.                                                       
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~lR-------------------------------------------------------  274 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAELR-------------------------------------------------------  274 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhhh-------------------------------------------------------
Confidence            9999999999999988775544432                                                       


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (764)
                                   .|.-++.+++|-|...+=-+...                          .+..         ..+++
T Consensus       275 -------------~hEh~vEci~wap~~~~~~i~~a--------------------------t~~~---------~~~~~  306 (406)
T KOG0295|consen  275 -------------EHEHPVECIAWAPESSYPSISEA--------------------------TGST---------NGGQV  306 (406)
T ss_pred             -------------ccccceEEEEecccccCcchhhc--------------------------cCCC---------CCccE
Confidence                         35567778877765321100000                          0000         04578


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      +.+++.|++|++||+.++.++.++..+ ..|..++|+|.|+||+++.+|+++++||++++++...+..|..-|+++.|..
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence            999999999999999999999999877 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEc
Q 004270          568 DGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~  586 (764)
                      +..+++||+-|.++++|.-
T Consensus       387 ~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCceEEeccccceeeeeec
Confidence            9999999999999999974

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.9e-34  Score=273.95  Aligned_cols=468  Identities=15%  Similarity=0.219  Sum_probs=353.0

Q ss_pred             ecCCeEEEEEEeCC--------eEEEEecCCCeEEEecCCCCcceEEEEEeCC--eEEEEE-CC--e--EEEEecCce--
Q 004270           23 RLGTENFVTVSVGK--------AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAAY-GN--H--IAVVKRAHQ--   85 (764)
Q Consensus        23 ~~~~~~~~~~~~~~--------~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~--~~~~a~-g~--~--i~vw~~~~~--   85 (764)
                      .|+...++++...+        .++|||..+++-+++.......|+|+|||+-  +.++.. ..  .  +.|||-.++  
T Consensus       113 HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~  192 (626)
T KOG2106|consen  113 HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK  192 (626)
T ss_pred             cCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc
Confidence            35566666666655        3899999999999998888999999999975  444433 22  2  888885443  


Q ss_pred             EEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeEec-CCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      ....+.-...|....|   +.+.+++++ .|.+.+|+..++.+... ...++. ..+++.++.|.+++   -+++|..+|
T Consensus       193 ~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~eng---dviTgDS~G  267 (626)
T KOG2106|consen  193 LGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENG---DVITGDSGG  267 (626)
T ss_pred             cCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCC---CEEeecCCc
Confidence            3335555556666665   567777776 79999999998876322 122322 33677788899998   499999999


Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEE
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l  240 (764)
                      .|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..|| ..-+.++.... ...++|+.++=..  . -+
T Consensus       268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~-di  342 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--G-DI  342 (626)
T ss_pred             eEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--C-cE
Confidence            999999988888888889999999999999997555 99999999999 33333333332 2256788776432  2 26


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      +.|...+.|.-=.++++-.+...  +|......++.+|+.+.+++++.|+.+++|+  ..    ++... ..-..++.|+
T Consensus       343 ~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~----k~~wt-~~~~d~~~~~  413 (626)
T KOG2106|consen  343 LVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH----KLEWT-KIIEDPAECA  413 (626)
T ss_pred             EEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC----ceeEE-EEecCceeEe
Confidence            67777777777777766554444  6999999999999999999999999999997  22    22222 2346788999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      .|+|.| .++.|...|...+.|..+......                                            +.   
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------------------------------------------~~---  445 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------------------------------------------HT---  445 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEE--------------------------------------------Ee---
Confidence            999999 999999999999999876322111                                            10   


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-ceecCccccccccccCcEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~  479 (764)
                                            ...+++++.++|+|.++++|+.|+.|++|.+...... ....       ..|...|+.
T Consensus       446 ----------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ith  496 (626)
T KOG2106|consen  446 ----------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITH  496 (626)
T ss_pred             ----------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEE
Confidence                                  1378999999999999999999999999998654433 3332       345589999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-------------------cCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                      +.|++|++++.+-+.|-.|..|.-...+.....+                   ....+..++-+.+.+++|+|.+.|.|+
T Consensus       497 LDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~  576 (626)
T KOG2106|consen  497 LDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVH  576 (626)
T ss_pred             eeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEE
Confidence            9999999999999999999999433322221111                   124456666777888999999999999


Q ss_pred             EEEccCC---eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       541 v~d~~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +|...--   ....++.+|.+.|++++|..+...|++.+.|..|..|++
T Consensus       577 lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  577 LFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            9987543   335677899999999999998889998889999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-37  Score=311.86  Aligned_cols=283  Identities=25%  Similarity=0.383  Sum_probs=237.1

Q ss_pred             eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (764)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v  294 (764)
                      +..++... ...++|..|++|+. +||.|..|..|++|.+...++ ..++  +...+.         .+=+.+.|-.+.+
T Consensus       370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl-~~lk--~~~~l~---------~~d~~sad~~~~~  435 (707)
T KOG0263|consen  370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKL-KKLK--DASDLS---------NIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhh-cccc--chhhhc---------cccccccchhhhh
Confidence            34445444 56799999999999 999999999999999876533 2332  222111         1223344444555


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      .|.+..    ...+.+.||.++|..+.|+|+.++|++++.|+++|+|++.+....                         
T Consensus       436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-------------------------  486 (707)
T KOG0263|consen  436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-------------------------  486 (707)
T ss_pred             ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-------------------------
Confidence            544433    344557899999999999999999999999999999998643211                         


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                                                                        +             
T Consensus       487 ------------------------------------------------------------------V-------------  487 (707)
T KOG0263|consen  487 ------------------------------------------------------------------V-------------  487 (707)
T ss_pred             ------------------------------------------------------------------E-------------
Confidence                                                                              0             


Q ss_pred             CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEE
Q 004270          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~  533 (764)
                            .+        .+|..+|..+.|+|.|-++||++.|++-++|.....++++.+..+ +.+.|+.|+|++.|+|+|
T Consensus       488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence                  01        389999999999999999999999999999999999999999888 899999999999999999


Q ss_pred             eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCe
Q 004270          534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV  612 (764)
Q Consensus       534 ~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~  612 (764)
                      +.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999988865 999999999999


Q ss_pred             EEEEEeCCCeEEEEecccccCC
Q 004270          613 LATAHVDQNGVYLWVNRCMFSG  634 (764)
Q Consensus       613 lat~~~d~~~i~lW~~~~~~~~  634 (764)
                      ||++|.|. +|++||+...+..
T Consensus       634 Lasgg~Dn-sV~lWD~~~~~~~  654 (707)
T KOG0263|consen  634 LASGGADN-SVRLWDLTKVIEL  654 (707)
T ss_pred             EEecCCCC-eEEEEEchhhccc
Confidence            99999999 7999998765544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.9e-37  Score=283.84  Aligned_cols=280  Identities=21%  Similarity=0.386  Sum_probs=244.9

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      +.+|..+.|.|+|+ .|++|+..|.+.+|+..+......++ +|..+|+++.|++++.++++|+.+|.|++|+.+..   
T Consensus        96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---  170 (464)
T ss_pred             ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchh---
Confidence            46899999999999 89999999999999985555444455 99999999999999999999999999999976654   


Q ss_pred             ceeeEeccCC-CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          304 PRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       304 ~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                        .++....| ...|++++|+|+...+++++.||+|+|||....+....                               
T Consensus       171 --nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-------------------------------  217 (464)
T KOG0284|consen  171 --NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-------------------------------  217 (464)
T ss_pred             --hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-------------------------------
Confidence              23333444 49999999999989999999999999999764432211                               


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (464)
T KOG0284|consen  218 --------------------------------------------------------------------------------  217 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEE
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  541 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v  541 (764)
                             +.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++++|++++.|..+++
T Consensus       218 -------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  218 -------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             -------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence                   1389999999999999999999999999999999999999998776 88999999999999999999999999


Q ss_pred             EEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEcCCCCeEEEEEe
Q 004270          542 FDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~lat~~~  618 (764)
                      ||+++.+.+..+++|...|++++|+| ...+|.+|+.||.|..|.+...+++..+.  +...|++++|+|=|..|++|+.
T Consensus       291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence            99999999999999999999999999 44678899999999999999767666654  3445999999999999999999


Q ss_pred             CCCeEEEEecc
Q 004270          619 DQNGVYLWVNR  629 (764)
Q Consensus       619 d~~~i~lW~~~  629 (764)
                      |. ++++|.-.
T Consensus       371 d~-t~rfw~r~  380 (464)
T KOG0284|consen  371 DR-TVRFWTRN  380 (464)
T ss_pred             Cc-ceeeeccC
Confidence            98 69999854

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.9e-36  Score=271.93  Aligned_cols=284  Identities=20%  Similarity=0.386  Sum_probs=255.0

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      .+|.+.|.|+++.|.++ ++++|+.|++|+|||+.+|++..++. +|-..|..+++++..++|++++.|+.|+.||++.+
T Consensus       148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            45589999999999988 99999999999999999999999998 99999999999999999999999999999999887


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                          +.++...||-..|.|++.+|.-..|++|+.|.++|+||+++...+..                             
T Consensus       226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-----------------------------  272 (460)
T KOG0285|consen  226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-----------------------------  272 (460)
T ss_pred             ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-----------------------------
Confidence                68888899999999999999889999999999999999875432111                             


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                                                                                      
T Consensus       273 --------------------------------------------------------------------------------  272 (460)
T KOG0285|consen  273 --------------------------------------------------------------------------------  272 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeE
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI  539 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i  539 (764)
                       +        .+|...|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus       273 -l--------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni  342 (460)
T KOG0285|consen  273 -L--------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI  342 (460)
T ss_pred             -e--------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence             1        389999999999998889999999999999999999988888776 889999999999999999877 68


Q ss_pred             EEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE---------eeCCceEEEEEcCCC
Q 004270          540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------HVDVSITALSLSPNM  610 (764)
Q Consensus       540 ~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~~~~v~~l~~sp~g  610 (764)
                      +-|++..+..+..+.+|..-|++++...|| ++++|+..|.+.+||.++|...+..         .....|.+.+|...|
T Consensus       343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            999999999999999999999999999887 7888999999999999998655443         223459999999999


Q ss_pred             CeEEEEEeCCCeEEEEecccc
Q 004270          611 DVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       611 ~~lat~~~d~~~i~lW~~~~~  631 (764)
                      ..|++|..|. +|++|.-+..
T Consensus       422 ~rlit~eadK-tIk~~keDe~  441 (460)
T KOG0285|consen  422 SRLITGEADK-TIKMYKEDEH  441 (460)
T ss_pred             ceEEeccCCc-ceEEEecccc
Confidence            9999999999 6999986543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.8e-35  Score=261.82  Aligned_cols=282  Identities=18%  Similarity=0.337  Sum_probs=248.1

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      .+|++.|..+.|+|+|. +||+|+.|..|.+|+.... +....+. +|.++|..+.|.+|++.+++++.|.+++.||.++
T Consensus        44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            45699999999999999 9999999999999996544 4555666 9999999999999999999999999999999988


Q ss_pred             CCCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      +    +..+..++|..-|+.+..+.-| .++.+++.|+++++||+++....+.+.                         
T Consensus       122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------  172 (338)
T KOG0265|consen  122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------  172 (338)
T ss_pred             c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence            7    6788889999999999865544 456688899999999998765554432                         


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (764)
                                                                  .+..++++.|...+..+.+|.-|+.|++||+..+..
T Consensus       173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~  208 (338)
T KOG0265|consen  173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG  208 (338)
T ss_pred             --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence                                                        237889999999999999999999999999998888


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecC-----cceEEEEEeecCCE
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL  529 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~  529 (764)
                      ...+.        +|...|+++..+++|.++.+-+.|.++++||++..    +++..+..+     .....++|+|++..
T Consensus       209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence            88775        99999999999999999999999999999998743    345555543     45678899999999


Q ss_pred             EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +.+|+.|..+++||....+.+..+.||.+.|+.++|+|...+|.+++.|.+|++=+
T Consensus       281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999999999999999999999999999999999999998744

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-36  Score=277.32  Aligned_cols=290  Identities=21%  Similarity=0.326  Sum_probs=252.9

Q ss_pred             eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      .+. .|...|.-+.|+++|++||+++.|.+..+|.+..... .++..++.+|..+|..+.|+||.+++++|+.|..+++|
T Consensus       219 il~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            344 7999999999999999999999999999999876544 57788899999999999999999999999999999999


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      |+.++.....+..                                                                   
T Consensus       297 Dv~tgd~~~~y~~-------------------------------------------------------------------  309 (519)
T KOG0293|consen  297 DVDTGDLRHLYPS-------------------------------------------------------------------  309 (519)
T ss_pred             cCCcchhhhhccc-------------------------------------------------------------------
Confidence            9988766554432                                                                   


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ++...+.+++|.|||..+++|+.|+.+..|++.... .....       ......|.+++..+||+++++.+.|..++++
T Consensus       310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~  381 (519)
T KOG0293|consen  310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLY  381 (519)
T ss_pred             CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccc-------ccccceeEEEEEcCCCcEEEEEecccceeee
Confidence            233788999999999999999999999999997654 22222       1233569999999999999999999999999


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC--eeEEEEcC-CCcEEEEEeCC
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGMD  578 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~--i~~l~~s~-dg~~l~s~s~d  578 (764)
                      +..+...+..+..+.+|++.++|.|++++.+.-.+..+++||++..+.++++.||...  |-.-+|-- +..++++||+|
T Consensus       382 ~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED  461 (519)
T KOG0293|consen  382 NREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED  461 (519)
T ss_pred             chhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence            9998888878888899999999999999999999999999999999999999999865  33335644 55899999999


Q ss_pred             CcEEEEEcCccceEEEEeeCCc-eEEEEEcC-CCCeEEEEEeCCCeEEEEecc
Q 004270          579 GSLRIWDVILARQIDAIHVDVS-ITALSLSP-NMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       579 g~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp-~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +.|+||+..+|+++..+.+|.. |++++|+| +-.++|+|+.|+ +|+||.+.
T Consensus       462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~  513 (519)
T KOG0293|consen  462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS  513 (519)
T ss_pred             ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence            9999999999999999999986 99999999 567889999888 79999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-34  Score=288.85  Aligned_cols=408  Identities=17%  Similarity=0.283  Sum_probs=314.9

Q ss_pred             CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (764)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (764)
                      ....+..+.|||..  ..++++-..|.|++||.+-+.++..|..|.++|..++|+|.+.++++|+.|-.|++|+.++.++
T Consensus         8 kSsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             ccccccceecCCCC--CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            44556778999999  7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (764)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw  295 (764)
                      +.++.+| -.-|+.+.|++.-. .+++++.|.+|+||+..+++++..+. +|...|.|.+|+|....++++|-|.+||||
T Consensus        86 lftL~GH-lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   86 LFTLLGH-LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             hhhhccc-cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEE
Confidence            9999887 78999999999888 89999999999999999999999999 999999999999999999999999999999


Q ss_pred             EecCCC------C-------------------CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          296 IFDTTD------G-------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       296 ~~~~~~------~-------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      |+..-.      +                   .......+.||...|+.++|+|.-..+++|+.|+.|++|.....+   
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK---  239 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---  239 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---
Confidence            985321      0                   112234568999999999999999999999999999999875321   


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                                                                           .|          ....+.+|...|+++
T Consensus       240 -----------------------------------------------------aW----------EvDtcrgH~nnVssv  256 (1202)
T KOG0292|consen  240 -----------------------------------------------------AW----------EVDTCRGHYNNVSSV  256 (1202)
T ss_pred             -----------------------------------------------------ce----------eehhhhcccCCcceE
Confidence                                                                 12          233455888999999


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC------
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK------  504 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~------  504 (764)
                      -|+|..+.+++.+.|+.|++||+.....+.++.        ...+....++.+|..++++.|- |+-+.+|.++      
T Consensus       257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~  327 (1202)
T KOG0292|consen  257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------RENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAY  327 (1202)
T ss_pred             EecCccceeEecCCCccEEEEecccccceeeee--------ccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceE
Confidence            999999999999999999999999999888885        4566788888888887666554 4444444443      


Q ss_pred             ---------------------CCCee--eeEecC----cceEEEEEeecCCEEEEEe--CCCeEEEEEccCC--------
Q 004270          505 ---------------------GRDLK--SRWEVG----CSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL--------  547 (764)
Q Consensus       505 ---------------------~~~~~--~~~~~~----~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~--------  547 (764)
                                           +.+-.  ..++..    .+..++.++|..+.+..++  +++.--++.+...        
T Consensus       328 ~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~  407 (1202)
T KOG0292|consen  328 AVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK  407 (1202)
T ss_pred             EEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch
Confidence                                 22111  111112    5677888988766554442  3344444433211        


Q ss_pred             ---------------------------eEEEEeec-------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270          548 ---------------------------RMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  593 (764)
Q Consensus       548 ---------------------------~~~~~~~~-------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  593 (764)
                                                 -.++.+..       -...+..|-+..+|.+|+..  ...|.++|++..+.+.
T Consensus       408 ~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~  485 (1202)
T KOG0292|consen  408 DVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVG  485 (1202)
T ss_pred             hhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEE
Confidence                                       00011110       00123344455556555432  4469999999888888


Q ss_pred             EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       594 ~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      .++. +.|.-+.||+|+.++|.-+..  +|.|.+-
T Consensus       486 si~~-s~vkyvvws~dm~~vAll~Kh--~i~i~~k  517 (1202)
T KOG0292|consen  486 SIKV-SKVKYVVWSNDMSRVALLSKH--TITIADK  517 (1202)
T ss_pred             EEec-CceeEEEEcCccchhhhcccc--eEEEEec
Confidence            7765 358889999999888776654  3666654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.8e-34  Score=250.39  Aligned_cols=294  Identities=18%  Similarity=0.275  Sum_probs=244.0

Q ss_pred             eeeEecCCccccEEEEeCC-CCCCEEEEEeCCCcEEEEeCCC---CeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNIST---KKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      ++.++.+.+.+..+++||. |  ..|++++.|+.|++|+...   -.+...+ .+|...|.+++|+|.|++||+|+.|.+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            5667778888999999998 6  6899999999999999874   3444444 479999999999999999999999999


Q ss_pred             EEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeeEEEEecC
Q 004270          205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       205 i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      +.||.-..+  +++..+.+| ...|.+++|+++|. +||+++.|..|.||.+..+   .+...+. .|...|..+.|+|.
T Consensus        85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT  161 (312)
T ss_pred             EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence            999986644  466666665 88999999999999 9999999999999998754   5677777 89999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhH
Q 004270          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK  359 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  359 (764)
                      ..+|+++|.|++|++|+.+. .....+...+.+|...|.+++|++.|..|++++.|+++++|.....-            
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------  228 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------  228 (312)
T ss_pred             cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence            99999999999999998765 66788999999999999999999999999999999999999854211            


Q ss_pred             HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE
Q 004270          360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  439 (764)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  439 (764)
                                                                                  ...|...+..+++.  ...+
T Consensus       229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence                                                                        01233667778887  5689


Q ss_pred             EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECC
Q 004270          440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~  504 (764)
                      ++++.|+.|++|....+.....+... ......|...|++++|+|. ..+|++++.||.|++|.+.
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999999999987654222222110 1112479999999999994 6789999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-35  Score=272.22  Aligned_cols=295  Identities=17%  Similarity=0.271  Sum_probs=242.9

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce---EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      +..+.+..|...|+-+.||++|++||+++.|.+..+|.+.....   ..++.++ ..+|..+.||||.+ +|++++.+..
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~  292 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEV  292 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHh
Confidence            34456788999999999999999999999999999999887655   5555554 78999999999999 7778888888


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-CCCCeeEEEecCCC
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGR  327 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~  327 (764)
                      +.+||..+|.....+..+|...+.+++|.|||..+++|+.|+++..|+++...     +....+- ...|.+++..+||+
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCc
Confidence            99999999999999987778999999999999999999999999999988652     2222222 25688999999999


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      ++++.+.|..+++++..+......+                                                       
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~li-------------------------------------------------------  392 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLI-------------------------------------------------------  392 (519)
T ss_pred             EEEEEecccceeeechhhhhhhccc-------------------------------------------------------
Confidence            9999999999999997643322111                                                       


Q ss_pred             cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                                    ....+++++++|.+|+++++.-.+..+++||++....+..+.        +|..          +.
T Consensus       393 --------------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~--------Ghkq----------~~  440 (519)
T KOG0293|consen  393 --------------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF--------GHKQ----------GH  440 (519)
T ss_pred             --------------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh--------cccc----------cc
Confidence                          123789999999999999999999999999999877777775        6653          34


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      +++-.+..|                            .+..++|+|++|+.|+||+..+++++.++.||...|++++|+|
T Consensus       441 fiIrSCFgg----------------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  441 FIIRSCFGG----------------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             eEEEeccCC----------------------------CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence            444332211                            1256889999999999999999999999999999999999999


Q ss_pred             C-CcEEEEEeCCCcEEEEEcCc
Q 004270          568 D-GKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       568 d-g~~l~s~s~dg~i~iwd~~~  588 (764)
                      . -.++|+||.||+||||-...
T Consensus       493 ~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  493 ADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCHHHhhccCCCCeEEEecCCc
Confidence            5 46789999999999998753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.8e-36  Score=278.97  Aligned_cols=283  Identities=19%  Similarity=0.309  Sum_probs=248.9

Q ss_pred             ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV  217 (764)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~  217 (764)
                      ..+..+.+.|+|  +.|++|+..|.+.+||..+...-..++.|.++|+++.|++++.++++|+.+|.|++|+.. ...+.
T Consensus        97 c~V~~v~WtPeG--RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk  173 (464)
T KOG0284|consen   97 CPVNVVRWTPEG--RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK  173 (464)
T ss_pred             cceeeEEEcCCC--ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence            345677899999  899999999999999985555445567999999999999999999999999999999976 44556


Q ss_pred             EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (764)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (764)
                      .+..+|...|++++|+|+.. .+++++.||+|+|||....+....+. +|.-.|.+++|+|...+++++|.|+.|++||.
T Consensus       174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecC
Confidence            66667678999999999777 89999999999999999998888887 99999999999999999999999999999987


Q ss_pred             cCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      .+.    .++.++.+|...|..+.|.+++++|+++|.|..++++|+++.+..+.+                         
T Consensus       252 rSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-------------------------  302 (464)
T KOG0284|consen  252 RSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-------------------------  302 (464)
T ss_pred             CCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-------------------------
Confidence            766    678888999999999999999999999999999999999754433332                         


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCC
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG  456 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~  456 (764)
                                                                 .+|...+++++|+|.. .++.+|+.||.|..|.+...
T Consensus       303 -------------------------------------------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~  339 (464)
T KOG0284|consen  303 -------------------------------------------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE  339 (464)
T ss_pred             -------------------------------------------hcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence                                                       2567899999999965 67889999999999999866


Q ss_pred             cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+....       .+|...|.+++++|-|..|++|+.|.++++|.-.
T Consensus       340 ~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  340 EPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            6666655       5999999999999999999999999999999754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=264.79  Aligned_cols=295  Identities=17%  Similarity=0.262  Sum_probs=259.0

Q ss_pred             EEEecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270           86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      .+.+.||.+.|.+++++  ..++++++.|++++|||+.++++    ..++..|...+..+++++-.  .++++++.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V  217 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV  217 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence            34489999999999985  78999999999999999999999    67788888888899999988  799999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      +.||++..+.++.+.||-+.|.|++..|.-+.|++|+.|..+++||+++...+..+.+| ..+|.++.+.|-.. .+++|
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG  295 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence            99999999999999999999999999999999999999999999999999999999876 89999999998776 79999


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      +.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ |+-|++..+    ..+..+.+|..-+++++.+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence            999999999999999999998 8999999999999999999999885 899987665    5666688999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      .|+ ++++|+..|.+.+||.+++...+.....                                                
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------------------------------  400 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------------------------------  400 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCccccccccc------------------------------------------------
Confidence            776 7899999999999999876543332110                                                


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~  455 (764)
                                  .....-.....|.+.+|...|..|++|..|.+|.+|.-..
T Consensus       401 ------------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  401 ------------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ------------ccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence                        0000012236789999999999999999999999997653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-34  Score=256.29  Aligned_cols=298  Identities=18%  Similarity=0.274  Sum_probs=256.6

Q ss_pred             ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC-CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270          127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (764)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i  205 (764)
                      ..|...+..|.+.+.++.|+|++  ..+++|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+|
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV  114 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence            34566677889999999999999  89999999999999995 4567788899999999999999999999999999999


Q ss_pred             EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  285 (764)
                      +.||+++|+.++.++.+ ..-|.++.-+.-|..++.+|+.|+++++||+++...++++.  ..-.++++.|...+..+++
T Consensus       115 ~~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceee
Confidence            99999999999999887 78899998666777788999999999999999999888886  5678999999999999999


Q ss_pred             EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      |+-|+.|++||+...    ..+..+.||..+|+.+..+++|.++++-+.|.++++||++.......              
T Consensus       192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R--------------  253 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR--------------  253 (338)
T ss_pred             ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc--------------
Confidence            999999999998776    46777889999999999999999999999999999999875432211              


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~  445 (764)
                                                         .+.++.-..     +      ........++|+|+++++..|+.|
T Consensus       254 -----------------------------------~v~if~g~~-----h------nfeknlL~cswsp~~~~i~ags~d  287 (338)
T KOG0265|consen  254 -----------------------------------CVKIFQGHI-----H------NFEKNLLKCSWSPNGTKITAGSAD  287 (338)
T ss_pred             -----------------------------------eEEEeecch-----h------hhhhhcceeeccCCCCcccccccc
Confidence                                               111111100     0      112345568999999999999999


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ..+++||..+...+..++        +|.+.|.+++|+|....+.+++.|.+|.+=
T Consensus       288 r~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  288 RFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             ceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            999999999888877775        999999999999999999999999998763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=280.77  Aligned_cols=288  Identities=20%  Similarity=0.334  Sum_probs=254.6

Q ss_pred             eeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      +.+.++. +|...|+++.|.| .+.+|++++.|+.|++|++-..   .++++++.+|..+|..++|+++|..+++++.|+
T Consensus       205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4455566 9999999999999 8889999999999999998763   378999999999999999999999999999999


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .+++||++++++...+..                                                              
T Consensus       281 ~lKlwDtETG~~~~~f~~--------------------------------------------------------------  298 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL--------------------------------------------------------------  298 (503)
T ss_pred             eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence            999999999987766543                                                              


Q ss_pred             ecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC
Q 004270          417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (764)
                             ...++++.+.|++ +.+++|+.|+.|..||+++++.+..+.        .|-+.|..+.|-++|+++++++.|
T Consensus       299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence                   1678899999999 899999999999999999999999886        899999999999999999999999


Q ss_pred             CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---eEEEEeecCC--CCeeEEEEcCC
Q 004270          496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED  568 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~---~~~~~~~~h~--~~i~~l~~s~d  568 (764)
                      +.++||+....-.+..+...  ....++..+|+++++++-+.|+.|.+|.+...   ...+.|+||.  +--..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            99999999988776655433  56778999999999999999999999986543   2345688886  34567899999


Q ss_pred             CcEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCC-CCeEEEEEeCCCeEEEEe
Q 004270          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN-MDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~-g~~lat~~~d~~~i~lW~  627 (764)
                      |++|++|+.||.+.+||..+-+++..++.| .++..+.|+|. -..+|+++.||. |++|+
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-IKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-eEecC
Confidence            999999999999999999999999999988 56999999994 568999999995 99996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.7e-33  Score=280.13  Aligned_cols=286  Identities=29%  Similarity=0.480  Sum_probs=249.5

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      .++++|.++|.+++|+|++++|++++.+|.|++|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|++||+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~   80 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWDL   80 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEEc
Confidence            457789999999999999999999999999999999988877777655 67889999999997 8999999999999999


Q ss_pred             CCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270          255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                      .+++....+. .|...+.++.|++++.++++++.|+.+++|++...    +....+..|...+.+++|+|++.++++++.
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence            9988888887 88889999999999888988888999999998744    455566678888999999998888888777


Q ss_pred             CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (764)
Q Consensus       335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (764)
                      |+.+++||+...+.                                                                  
T Consensus       156 ~~~i~i~d~~~~~~------------------------------------------------------------------  169 (289)
T cd00200         156 DGTIKLWDLRTGKC------------------------------------------------------------------  169 (289)
T ss_pred             CCcEEEEEcccccc------------------------------------------------------------------
Confidence            88888888643211                                                                  


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (764)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (764)
                                                                  ...+        ..|...+.++.|+|+++.+++++.
T Consensus       170 --------------------------------------------~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         170 --------------------------------------------VATL--------TGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             --------------------------------------------ceeE--------ecCccccceEEECCCcCEEEEecC
Confidence                                                        1111        156678899999999989999999


Q ss_pred             CCeEEEEECCCCCeeeeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270          495 HGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  573 (764)
                      |+.|++||+.+++.+..+ .+...+.++.|++++.++++++.++.|++||+.+++....+.+|...|.+++|+|++++|+
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence            999999999998888888 4457999999999988888888899999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEE
Q 004270          574 SSGMDGSLRIWD  585 (764)
Q Consensus       574 s~s~dg~i~iwd  585 (764)
                      +++.|+.|++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=258.76  Aligned_cols=499  Identities=16%  Similarity=0.240  Sum_probs=358.6

Q ss_pred             cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (764)
Q Consensus        92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~  168 (764)
                      --.+|.++++  ..+.||.+-.+|.|.+|++...-..   ...+.++ +..+..++|++.+   .|++.+.+|.|.-||+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDL   97 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEec
Confidence            3467899998  4678999999999999999885441   2334444 3556677788554   7999999999999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      .++++.+.+....+.|++++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|.|++. .+++|+.||
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg  176 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDG  176 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCc
Confidence            99999999999999999999999999999999999888888877776554432 2258999999999998 799999999


Q ss_pred             cEEEEECCCceeeeeee-------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          248 VISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      .|++||..++..+....       .....-|+++.|..++ .+++|..-|+|++||....    .++.....|.+.|.++
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLAL  251 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEE
Confidence            99999999997766222       1123458889998666 7999999999999987766    6778888999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +..+++.+++++|.|+.+..|...+.......             ......+...+.+++..+       +.+..+..+.
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~-------------~~~r~~h~hdvrs~av~~-------~~l~sgG~d~  311 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI-------------NSRRDLHAHDVRSMAVIE-------NALISGGRDF  311 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceee-------------eccccCCcccceeeeeec-------ceEEecceee
Confidence            99999999999999999999887765431110             011111112222222221       2344444444


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccc-cccccccCcEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHNGEVVG  479 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~  479 (764)
                      .+.+-.........+... ..   .+-.+.....-.++++.--....+.+|.+.+......+..... .........|.+
T Consensus       312 ~l~i~~s~~~~~~~h~~~-~~---~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~  387 (691)
T KOG2048|consen  312 TLAICSSREFKNMDHRQK-NL---FPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC  387 (691)
T ss_pred             EEEEccccccCchhhhcc-cc---ccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence            454444443333333311 11   1222223333346666666677788888877643322211000 001133457899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC------cceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeE--E
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--V  550 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~--~  550 (764)
                      .+.+|+|++++.+.- ..+++|.++....+......      -....+.|+-|++.++..+ ....+.++++++...  +
T Consensus       388 ~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel  466 (691)
T KOG2048|consen  388 AAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL  466 (691)
T ss_pred             eccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence            999999999887764 56788888754333333222      4677888999999888887 778888888876532  2


Q ss_pred             EEee--cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE-eeCCceEEEEEcC-CCCeEEEEEeCCCeEEEE
Q 004270          551 RKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       551 ~~~~--~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~sp-~g~~lat~~~d~~~i~lW  626 (764)
                      ..+.  +-...|..+..||||+|||+.+.+|.|.+|++++++.-... +....++.++|+| +...|+.++++++ ++=+
T Consensus       467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQ-v~ef  545 (691)
T KOG2048|consen  467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQ-VFEF  545 (691)
T ss_pred             hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCe-EEEE
Confidence            2222  34567999999999999999999999999999987765444 4557799999995 6778889998985 9888


Q ss_pred             ec
Q 004270          627 VN  628 (764)
Q Consensus       627 ~~  628 (764)
                      ++
T Consensus       546 di  547 (691)
T KOG2048|consen  546 DI  547 (691)
T ss_pred             ec
Confidence            88

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-34  Score=251.09  Aligned_cols=290  Identities=19%  Similarity=0.331  Sum_probs=258.5

Q ss_pred             EEEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      .+-.+|..+|..++|||   +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.....+.. ..|+++.|-+-++
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv   85 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV   85 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence            34579999999999985   7889999999999999999999999999886 89999999998877 7889999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      ||.-+|..+..+.  |..-|.+++|+.|.++|++|+.+.-+|++|++..+..   .....+|.+.|..+.|....+.|++
T Consensus        86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCceEEe
Confidence            9999999999987  8889999999999999999999999999999877654   3445799999999999998899999


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ++.|++||+||.+++.....+                                                           
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL-----------------------------------------------------------  181 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSL-----------------------------------------------------------  181 (334)
T ss_pred             eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence            999999999998776543332                                                           


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                                                                                  .....|+++.++++|++|.+
T Consensus       182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278|consen  182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence                                                                        23456788888888886554


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCc
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK  570 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~  570 (764)
                      + ..+.|++||.++..++..++.+..|.+..++|+...+++|++|+.++.||..+++.+..+ ++|.++|.++.|+|||.
T Consensus       202 a-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  202 A-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             e-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            4 457899999999999999999999999999999999999999999999999999999886 89999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCccce
Q 004270          571 WLLSSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       571 ~l~s~s~dg~i~iwd~~~~~~  591 (764)
                      ..++||+||+||+|....++.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eeeccCCCceEEEEEecCCCc
Confidence            999999999999999876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=275.58  Aligned_cols=290  Identities=18%  Similarity=0.290  Sum_probs=244.6

Q ss_pred             CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      .+.++.+.+|...|+++.|.| .+.+|++++.|+.|+|||+.. +++++++.+| ..+|.+++|+++|. .+.+++.|+.
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~  281 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF  281 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence            356788999999999999999 899999999999999999987 7788888765 89999999999999 7889999999


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      |++||+++|+++..+.  ....++++.|.|++ +.+++|+.|+.|+.||++.+    .+++....|-+.|..+.|.++|+
T Consensus       282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence            9999999999999987  55678999999998 79999999999999999887    57778888999999999999999


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      ++++++.|+++++|+...+.....+.                                                      
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------  381 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------  381 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence            99999999999999976543222111                                                      


Q ss_pred             cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                                                                                     ..+.....++..+|++.
T Consensus       382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence                                                                           02222345666677777


Q ss_pred             EEEEEeCCCeEEEEECCCC---CeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270          488 LMISAGYHGDIKVWDFKGR---DLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~---~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~  561 (764)
                      +++.-+.|..+.++.+...   .....++.+   +.-..+.|||||++|++|+.||.+.+||.++-+++..+++|.+++.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence            7777777777777765432   122233333   5567899999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC-cEEEEEeCCCcEEEEE
Q 004270          562 DFCFSEDG-KWLLSSGMDGSLRIWD  585 (764)
Q Consensus       562 ~l~~s~dg-~~l~s~s~dg~i~iwd  585 (764)
                      .+.|+|.. ..+||++.||.|++||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            99999954 5799999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-33  Score=238.29  Aligned_cols=284  Identities=20%  Similarity=0.379  Sum_probs=243.6

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      ..+..+ +++|.++.|+-||+ +.++++.|.+|++|+...+.++++.. +|...|..++.+.|+..+++++.|+.+.+||
T Consensus        11 ~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEE
Confidence            334444 88999999999999 88889999999999999999999999 9999999999999999999999999999999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      ++++    +..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.+......                          
T Consensus        88 V~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP--------------------------  137 (307)
T KOG0316|consen   88 VNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP--------------------------  137 (307)
T ss_pred             cccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------------
Confidence            9988    7889999999999999999999999999999999999986532110                          


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (764)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (307)
T KOG0316|consen  138 --------------------------------------------------------------------------------  137 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC
Q 004270          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  536 (764)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (764)
                        ++.+        ......|.++.+.  +..+++|+.||++|.||++.|++...+ ...+|++++|++|++...+++-|
T Consensus       138 --iQil--------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  138 --IQIL--------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             --cchh--------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeecc
Confidence              0011        1344566777665  457899999999999999988765433 34799999999999999999999


Q ss_pred             CeEEEEEccCCeEEEEeecCCCCe--eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEEEEEcCCCCe
Q 004270          537 LVIRLFDVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDV  612 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h~~~i--~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp~g~~  612 (764)
                      +++++.|-.+|+++..++||.+.-  .+.+++.....+++|++||.|++||+.++.++..+..++.  +++++++|....
T Consensus       205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            999999999999999999998654  4557787888999999999999999999999999988775  799999999888


Q ss_pred             EEEEEeCCCeEEEEec
Q 004270          613 LATAHVDQNGVYLWVN  628 (764)
Q Consensus       613 lat~~~d~~~i~lW~~  628 (764)
                      |.++...+  +.+|.-
T Consensus       285 f~~A~~~~--~~~~~~  298 (307)
T KOG0316|consen  285 FITATGHG--DLFWYQ  298 (307)
T ss_pred             eeEecCCc--eeceee
Confidence            88887554  778863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-32  Score=273.17  Aligned_cols=285  Identities=23%  Similarity=0.411  Sum_probs=251.1

Q ss_pred             eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                      ..+. +|.++|.+++|+|+++++++++.||.+++|+++..    ........|...+..+.|+++++.+++++.|+.+++
T Consensus         3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            3455 79999999999999999999999999999998765    345566789999999999999999999999999999


Q ss_pred             EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (764)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (764)
                      |++........+                                                                    
T Consensus        78 ~~~~~~~~~~~~--------------------------------------------------------------------   89 (289)
T cd00200          78 WDLETGECVRTL--------------------------------------------------------------------   89 (289)
T ss_pred             EEcCcccceEEE--------------------------------------------------------------------
Confidence            998754322211                                                                    


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      ..+...+.++.++++++++++++.+|.+.+|++.++.....+.        .|...+.+++++|++.++++++.|+.|++
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            1234689999999999999999889999999999877776664        78889999999999999888888999999


Q ss_pred             EECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      ||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.|+
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            999988888888766 5899999999999999999999999999999999999988999999999999999999888899


Q ss_pred             cEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       580 ~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      .|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .+++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence            99999999999888887654 599999999999999999999 599996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=288.68  Aligned_cols=290  Identities=22%  Similarity=0.396  Sum_probs=254.0

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v  294 (764)
                      ..+..++...|.++.|+++|+ .+++++.++.+++|+....+  ....+. +|...|.+++|+|++.++++++.|++|++
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence            344444467899999999999 79999999999999997777  666665 89999999999999999999999999999


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      ||+...   ...++.+.+|...|++++|+|+++.+++|+.|++|++||+.+++....+.                     
T Consensus       230 wd~~~~---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------------  285 (456)
T KOG0266|consen  230 WDLKDD---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------------  285 (456)
T ss_pred             eeccCC---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence            998222   26788889999999999999999999999999999999998765544432                     


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                                                     .|...+++++|+++|+++++++.||.|++||+.
T Consensus       286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence                                                           566899999999999999999999999999999


Q ss_pred             CCcc--cceecCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-c---ceEEEEEeec
Q 004270          455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV  526 (764)
Q Consensus       455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~  526 (764)
                      ++..  ...+.        .+..  .++.+.|+|+++++++++.|+.+++||+..+.....+..+ .   .+.+...++.
T Consensus       319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            9994  34443        3433  5999999999999999999999999999999988888766 2   4455566889


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEe--CCCcEEEEEcC
Q 004270          527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI  587 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s--~dg~i~iwd~~  587 (764)
                      +.++++|+.|+.|++||..++..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999999999999999999 89999999999999999998  78999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=262.06  Aligned_cols=270  Identities=21%  Similarity=0.396  Sum_probs=230.1

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...|+|+.+..+   .+++|..|++|+|||.++..++..+. +|++.|.|+.|  +.+.+++|+.|.+|++||++++   
T Consensus       197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---  267 (499)
T KOG0281|consen  197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---  267 (499)
T ss_pred             CCceEEEEecch---hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeec--cceEEEecCCCceEEEEeccCC---
Confidence            457999999633   69999999999999999999999998 99999999999  4569999999999999999987   


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (764)
                       +++..+-+|...|..+.|+  ..++++++.|.++++||+........                                
T Consensus       268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~--------------------------------  312 (499)
T KOG0281|consen  268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL--------------------------------  312 (499)
T ss_pred             -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--------------------------------
Confidence             6788888999999999997  44899999999999999865431100                                


Q ss_pred             cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (764)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~  463 (764)
                                                                                                 ...  
T Consensus       313 ---------------------------------------------------------------------------rrV--  315 (499)
T KOG0281|consen  313 ---------------------------------------------------------------------------RRV--  315 (499)
T ss_pred             ---------------------------------------------------------------------------HHH--
Confidence                                                                                       011  


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF  542 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~  542 (764)
                            +.+|...|+.+.|+  .+++++++.|.+|++|++.+++.++++..+ ..|.|+.+.  ++++++|+.|.+|++|
T Consensus       316 ------LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  316 ------LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW  385 (499)
T ss_pred             ------Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEE
Confidence                  13899999999986  459999999999999999999999999877 788888775  8999999999999999


Q ss_pred             EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE---------EEE-eeCCceEEEEEcCCCCe
Q 004270          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---------DAI-HVDVSITALSLSPNMDV  612 (764)
Q Consensus       543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---------~~~-~~~~~v~~l~~sp~g~~  612 (764)
                      |+..|.+++.++||..-|.++.|  |.+.+++|+.||+|+|||+..+..-         ..+ ++.+.|..+.|  |...
T Consensus       386 di~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq  461 (499)
T KOG0281|consen  386 DIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ  461 (499)
T ss_pred             eccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence            99999999999999999999999  5678999999999999999876432         222 33446999999  6667


Q ss_pred             EEEEEeCCCeEEEEecc
Q 004270          613 LATAHVDQNGVYLWVNR  629 (764)
Q Consensus       613 lat~~~d~~~i~lW~~~  629 (764)
                      +++++.|. +|-+|++.
T Consensus       462 IvsssHdd-tILiWdFl  477 (499)
T KOG0281|consen  462 IISSSHDD-TILIWDFL  477 (499)
T ss_pred             EEeccCCC-eEEEEEcC
Confidence            77777777 69999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.9e-32  Score=252.91  Aligned_cols=306  Identities=21%  Similarity=0.355  Sum_probs=245.3

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC---EEEEEcCCCcEEEEEecCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~  300 (764)
                      ...|.++.-.  ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|.-...   .+++++.|.++++|.++.+
T Consensus       105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            5788888877  44 8999999999999996 677888888 9999999998865443   5999999999999999888


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      ......+....||...|.+++..++|..+++|+.|.++.+|+..... ..++......++.+...               
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~---------------  243 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKR---------------  243 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhh---------------
Confidence            76666666667999999999999999999999999999999933221 11111100000000000               


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                                           ...                                ...+.++.
T Consensus       244 -------------------------------------~~~--------------------------------~~~r~P~v  254 (423)
T KOG0313|consen  244 -------------------------------------EKE--------------------------------GGTRTPLV  254 (423)
T ss_pred             -------------------------------------hhc--------------------------------ccccCceE
Confidence                                                 000                                00011111


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                      .+        .+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..++
T Consensus       255 tl--------~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TL--------EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             Ee--------cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence            12        49999999999998 6789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCC---eEEEEeecCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCccc-eEEEEeeCCc-eEEEEEcCCCCeEE
Q 004270          541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVLA  614 (764)
Q Consensus       541 v~d~~~~---~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~-v~~l~~sp~g~~la  614 (764)
                      +||.+++   -....|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|.. |.++.|+ ++.+++
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv  404 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV  404 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence            9998876   34667999999999999999665 57799999999999999877 7877776665 9999996 577999


Q ss_pred             EEEeCCCeEEEEeccc
Q 004270          615 TAHVDQNGVYLWVNRC  630 (764)
Q Consensus       615 t~~~d~~~i~lW~~~~  630 (764)
                      +|+.|. .|+++.-..
T Consensus       405 SGGaD~-~l~i~~~~~  419 (423)
T KOG0313|consen  405 SGGADN-KLRIFKGSP  419 (423)
T ss_pred             eccCcc-eEEEecccc
Confidence            999999 599987543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-32  Score=235.21  Aligned_cols=285  Identities=13%  Similarity=0.187  Sum_probs=245.4

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      ..+.+.++.++|.++.|+-+|+|.++++.|.+|++||...|..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence            45678899999999999999999999999999999999999999999876 78899999999988 89999999999999


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (764)
                      |+++|+....+. +|.+.|+.+.|+.+...+++|+.|.++++||.+....  .+++.+......|.++...  +..|++|
T Consensus        87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence            999999999999 9999999999999999999999999999998876644  5666667777788887774  5578888


Q ss_pred             eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (764)
Q Consensus       333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (764)
                      +.||++|.||++.++....                                                             
T Consensus       162 S~DGtvRtydiR~G~l~sD-------------------------------------------------------------  180 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSD-------------------------------------------------------------  180 (307)
T ss_pred             ccCCcEEEEEeecceeehh-------------------------------------------------------------
Confidence            8888888888765432111                                                             


Q ss_pred             cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE
Q 004270          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (764)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  492 (764)
                                                                                 -...+|+++.|+++++..+.+
T Consensus       181 -----------------------------------------------------------y~g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  181 -----------------------------------------------------------YFGHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             -----------------------------------------------------------hcCCcceeEEecCCCCEEEEe
Confidence                                                                       234578999999999999999


Q ss_pred             eCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC-eeEEEEcCC
Q 004270          493 GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSED  568 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~d  568 (764)
                      +.|+++++.|-.+|+++..++.+   ..-...+++.....+++|++||.|++||+.....+..+..|... |++++++|.
T Consensus       202 ~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  202 SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             eccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence            99999999999999999988877   33456677777889999999999999999999999999988887 899999998


Q ss_pred             CcEEEEEeCCCcEEEEE
Q 004270          569 GKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd  585 (764)
                      -.-++++. ++.+..|-
T Consensus       282 ~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  282 MDDFITAT-GHGDLFWY  297 (307)
T ss_pred             ccceeEec-CCceecee
Confidence            77777775 45566665

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.7e-34  Score=260.49  Aligned_cols=287  Identities=22%  Similarity=0.363  Sum_probs=225.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~  259 (764)
                      ....|.|+.+..  ..+++|..|++|+|||..+-.+++.+.+| .+.|.|+.|.  .+ ++++|+.|.+|++||.+++++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeecc--ce-EEEecCCCceEEEEeccCCch
Confidence            356788888764  46999999999999999988888888776 8999999995  44 999999999999999999999


Q ss_pred             eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (764)
                      +.++. +|...|..+.|+.  .++++++.|.++.+||+.... ...+.+.+.||...|+.+.|+  .+++++++.|++|+
T Consensus       270 l~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik  343 (499)
T KOG0281|consen  270 LNTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK  343 (499)
T ss_pred             hhHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence            99998 8999999999974  489999999999999998775 345567778999999999995  56999999999999


Q ss_pred             EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (764)
Q Consensus       340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (764)
                      +|++.+....+.+.                                                                  
T Consensus       344 vW~~st~efvRtl~------------------------------------------------------------------  357 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLN------------------------------------------------------------------  357 (499)
T ss_pred             EEeccceeeehhhh------------------------------------------------------------------
Confidence            99998776655542                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                        +|...|.|+.+  .|+++++|++|.+|++||+..|..+..+.        +|..-|.++.|  +.+.+++|+.||+|+
T Consensus       358 --gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--------GHEeLvRciRF--d~krIVSGaYDGkik  423 (499)
T KOG0281|consen  358 --GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--------GHEELVRCIRF--DNKRIVSGAYDGKIK  423 (499)
T ss_pred             --cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--------chHHhhhheee--cCceeeeccccceEE
Confidence              23344444433  46677777777777777777777776664        77777777777  377777777777777


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      +||+..+..-+.     +.                           ..-++..+..|+++|..+.|  |...+++++.|.
T Consensus       424 vWdl~aaldpra-----~~---------------------------~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd  469 (499)
T KOG0281|consen  424 VWDLQAALDPRA-----PA---------------------------STLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD  469 (499)
T ss_pred             EEecccccCCcc-----cc---------------------------cchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence            777665432111     00                           01134556679999999999  567899999999


Q ss_pred             cEEEEEcCccceE
Q 004270          580 SLRIWDVILARQI  592 (764)
Q Consensus       580 ~i~iwd~~~~~~~  592 (764)
                      +|-|||..++..-
T Consensus       470 tILiWdFl~~~~~  482 (499)
T KOG0281|consen  470 TILIWDFLNGPPS  482 (499)
T ss_pred             eEEEEEcCCCCcc
Confidence            9999999877544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-31  Score=302.95  Aligned_cols=301  Identities=15%  Similarity=0.271  Sum_probs=239.2

Q ss_pred             CCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC----c----eEEEEeccCCCC
Q 004270          160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA  226 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~-----~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~----~----~~~~~~~~~~~~  226 (764)
                      +|.+++|+..+.+....+     ..|...|.+++|+|+++++|+|+.|+.|+||++...    .    ....+..  ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence            677888988776655443     358999999999999999999999999999997532    1    1222222  467


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCce
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR  305 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~  305 (764)
                      +.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|++|++||+...    .
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~  609 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V  609 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence            99999998644489999999999999999999888887 8999999999997 7889999999999999998765    3


Q ss_pred             eeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                      .+..+.. ...+.++.|.+ ++.+|++|+.|+.|++||++....                                    
T Consensus       610 ~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------------------------------  652 (793)
T PLN00181        610 SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------------------------------  652 (793)
T ss_pred             EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------------------------------
Confidence            4444443 35788888854 788899999999999988753210                                    


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (764)
                                                                                               ....+  
T Consensus       653 -------------------------------------------------------------------------~~~~~--  657 (793)
T PLN00181        653 -------------------------------------------------------------------------PLCTM--  657 (793)
T ss_pred             -------------------------------------------------------------------------cceEe--
Confidence                                                                                     00011  


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------CeeeeEecC-cceEEEEEeecCCEEEEEeCCC
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL  537 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~  537 (764)
                            .+|...|.++.|. ++.++++++.|++|++||+..+      ..+..+..+ ..+..++|++++.+||+|+.|+
T Consensus       658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence                  2788888999986 6778999999999999998743      455666554 6788999999999999999999


Q ss_pred             eEEEEEccCCeEEEEe-------------ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       538 ~i~v~d~~~~~~~~~~-------------~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      .|++|+......+..+             ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999998765443222             234567999999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.3e-32  Score=284.46  Aligned_cols=288  Identities=24%  Similarity=0.409  Sum_probs=248.8

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc-cCC
Q 004270          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYD  213 (764)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~-~~~  213 (764)
                      ...+..+.|+|++  +.+++++.++.+++|+..+.+  ..+.+.+|...|..++|+|+++++++++.|++|+|||+ ..+
T Consensus       159 ~~sv~~~~fs~~g--~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDG--RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             cCceEEEEEcCCC--CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            3455567899999  789999999999999998888  78888999999999999999999999999999999999 455


Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      ..++++..| ...|++++|+|+|+ ++++|+.|++|+|||++++++...+. +|.+.|++++|++++.+|++++.|+.|+
T Consensus       237 ~~~~~l~gH-~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  237 RNLKTLKGH-STYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             eEEEEecCC-CCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence            788888754 88999999999996 99999999999999999999999999 9999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCC--CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      +||+......  +...+.++..+  ++++.|+|++.++++++.|+.+++|++..............              
T Consensus       314 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~--------------  377 (456)
T KOG0266|consen  314 VWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN--------------  377 (456)
T ss_pred             EEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC--------------
Confidence            9998876321  34555566555  99999999999999999999999999987765544322100              


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~  451 (764)
                                                                        . ...+.+...++.|.++++|+.|+.|++|
T Consensus       378 --------------------------------------------------~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~  406 (456)
T KOG0266|consen  378 --------------------------------------------------L-VRCIFSPTLSTGGKLIYSGSEDGSVYVW  406 (456)
T ss_pred             --------------------------------------------------c-ceeEecccccCCCCeEEEEeCCceEEEE
Confidence                                                              0 0234455568899999999999999999


Q ss_pred             ECcCCcccceecCccccccccc-cCcEEEEEECCCCCEEEEEe--CCCeEEEEECC
Q 004270          452 NLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAG--YHGDIKVWDFK  504 (764)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~  504 (764)
                      ++.++..+..+.        +| ...+..+.+++...++++++  .|+.+++|...
T Consensus       407 ~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  407 DSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999988888875        88 88999999999999999998  78999999754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=235.12  Aligned_cols=276  Identities=17%  Similarity=0.208  Sum_probs=245.9

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~  344 (764)
                      +|...|.+++|+.+|..|++++.|+++++|+++...  ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            789999999999999999999999999999988662  122334568999999999998 66789999999999999999


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      ..++......                                                                     .
T Consensus        96 ~~k~~~~i~~---------------------------------------------------------------------~  106 (313)
T KOG1407|consen   96 SGKCTARIET---------------------------------------------------------------------K  106 (313)
T ss_pred             cCcEEEEeec---------------------------------------------------------------------c
Confidence            8876655422                                                                     1


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..-.-++++|+|+++++|..|..|...|..+.+.....         .....+..++|+.++.+++....-|+|.|..+.
T Consensus       107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen  107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence            34456789999999999999999999999988777665         455678889999888888887778999999999


Q ss_pred             CCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270          505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (764)
Q Consensus       505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i  583 (764)
                      .-+++..++.| ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus       178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            99999998766 78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                      =++++|..+..++..++...++|+|...+||.++.|..
T Consensus       258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence            99999999999999999999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.4e-31  Score=297.93  Aligned_cols=303  Identities=12%  Similarity=0.174  Sum_probs=244.0

Q ss_pred             CCcEEEEECCCceeeeeeec----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC----ceeeEeccCCCCCC
Q 004270          246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP  317 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v  317 (764)
                      +|.+++|+..+.+....+..    .|.+.|.+++|+|++.++++|+.|+.|++|++......    ....... .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            67788888877655444332    48999999999999999999999999999987542111    0112222 235678


Q ss_pred             eeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      .+++|++ ++.+|++++.||+|++||+.+++....+                                            
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~--------------------------------------------  571 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM--------------------------------------------  571 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------------------------------------------
Confidence            9999988 5789999999999999998754332221                                            


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                                              .+|...|.+++|+| ++++|++|+.||.|++||+.++.....+.         +..
T Consensus       572 ------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~  618 (793)
T PLN00181        572 ------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA  618 (793)
T ss_pred             ------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence                                    24668899999996 78999999999999999999887776653         346


Q ss_pred             cEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCC-eeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC------
Q 004270          476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA------  546 (764)
Q Consensus       476 ~v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~------  546 (764)
                      .+.++.|+ +++.++++|+.||.|++||+.+.+ .+..+..+ ..|.++.|. ++.++++++.|++|++||+..      
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence            78999995 578999999999999999998765 34444444 789999997 788999999999999999974      


Q ss_pred             CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee--------------CCceEEEEEcCCCCe
Q 004270          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--------------DVSITALSLSPNMDV  612 (764)
Q Consensus       547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~v~~l~~sp~g~~  612 (764)
                      .+.+..+.+|...+..++|+|++++|++|+.|+.|++|+...+..+..+..              ...|.+++|+|++.+
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            367889999999999999999999999999999999999876654433221              123999999999999


Q ss_pred             EEEEEeCCCeEEEEec
Q 004270          613 LATAHVDQNGVYLWVN  628 (764)
Q Consensus       613 lat~~~d~~~i~lW~~  628 (764)
                      |++++.|+ .|++|++
T Consensus       778 lva~~~dG-~I~i~~~  792 (793)
T PLN00181        778 LVAANSTG-NIKILEM  792 (793)
T ss_pred             EEEecCCC-cEEEEec
Confidence            99999999 5999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=252.14  Aligned_cols=291  Identities=22%  Similarity=0.338  Sum_probs=249.5

Q ss_pred             eeeEecCCcc-ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEcCCCCEEEEEE
Q 004270          130 VGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC  200 (764)
Q Consensus       130 ~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~h~~~i~~~~~sp~~~~la~g~  200 (764)
                      .+++++.... +.+..|+|++  +++++|+.||.|.+||..+|+....++        -+..+|.|+.||.|...||+|+
T Consensus       205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            4556665543 4445599999  899999999999999999998765543        4689999999999999999999


Q ss_pred             cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270          201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE  280 (764)
Q Consensus       201 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~  280 (764)
                      .||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+++|++++.++ +|.+.|+...|.++|
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG  360 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence            9999999999999999999988899999999999999 78899999999999999999999999 999999999999999


Q ss_pred             CEEEEEcCCCcEEEEEecCCCCCceeeEec--cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                      ..+++++.||+|++|+..+.+    ++.++  .+...+|+++-..| +..+++.+...+++.+.++.. +..+.++.+. 
T Consensus       361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGk-  434 (508)
T KOG0275|consen  361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGK-  434 (508)
T ss_pred             CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCC-
Confidence            999999999999999876653    33332  35667889998888 667899999999999988642 2222222211 


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (764)
                                                                                      ...+...+.++||.|.
T Consensus       435 ----------------------------------------------------------------REgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  435 ----------------------------------------------------------------REGGDFINAILSPKGE  450 (508)
T ss_pred             ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence                                                                            1236677889999999


Q ss_pred             EEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      ++.+.+.|+.++.|+..+|.....+.        -|...+.+++-+|..+.+++-+.||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999988886        8999999999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-32  Score=236.82  Aligned_cols=292  Identities=13%  Similarity=0.184  Sum_probs=236.6

Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                      .++||..+++.+.++.+|++|.+++.|....+|-..+|+.+.++.+| .+.|.|+....+.+ .+++|+.|.++++||++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence            36789999999999999999999999999999999999999999886 89999999999998 89999999999999999


Q ss_pred             CceeeeeeecccccCeeEEEEecCCCEEEEEcC-----CCcEEEEEecCCCC---CceeeEeccCCCCCCeeEEEecCCC
Q 004270          256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      +|+.+..+.  -..+|..+.|+++|++++....     .+.|.++++.....   ...+...+..+...++.+-|.|-++
T Consensus        83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999997  6789999999999998776653     35688887764321   1122333344556666666666666


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      +|++|..||.|..||++++.                                                            
T Consensus       161 ~ii~Ghe~G~is~~da~~g~------------------------------------------------------------  180 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGK------------------------------------------------------------  180 (327)
T ss_pred             EEEEecCCCcEEEEEcccCc------------------------------------------------------------
Confidence            66666666666666655432                                                            


Q ss_pred             cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                                                                        ....-.       ..|...|+.+.++++..
T Consensus       181 --------------------------------------------------~~v~s~-------~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  181 --------------------------------------------------ELVDSD-------EEHSSKINDLQFSRDRT  203 (327)
T ss_pred             --------------------------------------------------eeeech-------hhhccccccccccCCcc
Confidence                                                              221111       37888999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCe--------------EEEEEccCCeEEEEe
Q 004270          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF  553 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~--------------i~v~d~~~~~~~~~~  553 (764)
                      ++++++.|.+-++||..+.+.++++....|+++.+++|-...++.|+....              -++|++-..+.+..+
T Consensus       204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999998888877754321              223333333456778


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +||-++|++++|+|||+..++|++||.||+.-...
T Consensus       284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999999999999986553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.8e-33  Score=248.91  Aligned_cols=284  Identities=20%  Similarity=0.316  Sum_probs=240.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-------cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      ..+.+.|..|||||++|++|+.||-|.+||..+|+....+..       -+..+|.|+.|+.|.. +||+|+.||.|++|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVW  290 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEE
Confidence            356788999999999999999999999999999986654431       1257899999999999 99999999999999


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (764)
                      .+++|.++..+..+|...|+++.|+.|+..+++++.|.++++.-+..+    ++++.+.||+.-|+...|.+||.+++++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEEe
Confidence            999999999999899999999999999999999999999999977665    7888999999999999999999999999


Q ss_pred             eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (764)
Q Consensus       333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (764)
                      +.||++++|+..+..+...+...                                                         
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~---------------------------------------------------------  389 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPL---------------------------------------------------------  389 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCC---------------------------------------------------------
Confidence            99999999998777665543221                                                         


Q ss_pred             cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEE
Q 004270          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMIS  491 (764)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s  491 (764)
                                                                                 +...+|.++-.-|. -..++.
T Consensus       390 -----------------------------------------------------------~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  390 -----------------------------------------------------------GTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             -----------------------------------------------------------CCcccceeEEEcCCCCceEEE
Confidence                                                                       22233444444442 245666


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      |....+|.+.++. |+.++.+...    +...+.+.||.|.++.+.++|+.++-|.+.+|++.+.+.-|...+-.++-+|
T Consensus       411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP  489 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP  489 (508)
T ss_pred             EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence            6666777777655 4455555332    5677889999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEE
Q 004270          568 DGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd  585 (764)
                      ..+.||+-++||.+++|.
T Consensus       490 HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  490 HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccchhhhhcccchhhhcC
Confidence            999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-30  Score=229.17  Aligned_cols=233  Identities=18%  Similarity=0.272  Sum_probs=204.6

Q ss_pred             ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      +.||+.+++.+.+  +|+.|.||+.|.+..||--.+++.    +.++..|.+.+++|.+..+.  .++++|+.|.++++|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW   79 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence            7899999999998  699999999999999999989998    89999999999999999999  899999999999999


Q ss_pred             eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEEcc-------CCceEEEEeccCCCCEEEEEEee
Q 004270          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS  234 (764)
Q Consensus       167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~l~fs~  234 (764)
                      |+++|+++..++. ..+|..+.|+++|++++..+.     .+.|.++|++       ..++...+..+ ...++.+-|.|
T Consensus        80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~  157 (327)
T KOG0643|consen   80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP  157 (327)
T ss_pred             EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence            9999999999987 789999999999998887654     3779999998       44557777666 68899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      -++ .|++|..||.|.+||+++++....-...|...|+.++++++..++++++.|.+-++||+.+-    .+++.. ...
T Consensus       158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te  231 (327)
T KOG0643|consen  158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE  231 (327)
T ss_pred             cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence            999 89999999999999999985555444489999999999999999999999999999998876    444444 456


Q ss_pred             CCCeeEEEecCCCEEEEEeCC
Q 004270          315 APPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~d  335 (764)
                      .||++.+++|-..+++.|+..
T Consensus       232 ~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             ccccceecccccceEEecCCc
Confidence            799999999976677766543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=2.3e-31  Score=231.69  Aligned_cols=281  Identities=16%  Similarity=0.255  Sum_probs=247.5

Q ss_pred             ccccCeeEEEEec---CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       266 ~h~~~v~~l~~~~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +|..+|..++|+|   +|-+|++++.|+.-.+-+=+++    .-+.++.||.+.|.+.....+....++++.|-+-++||
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            8999999999986   7889999999998776644444    56788899999999999998888899999999999999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      ..++.....+                                                                     .
T Consensus        88 a~tgdelhsf---------------------------------------------------------------------~   98 (334)
T KOG0278|consen   88 AVTGDELHSF---------------------------------------------------------------------E   98 (334)
T ss_pred             hhhhhhhhhh---------------------------------------------------------------------h
Confidence            9887766554                                                                     2


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      |...|.+++|+.|.++|++|+.+..+++||++.......-       ..+|.+.|..+.|....+.+++++.|++||+||
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD  171 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence            4467899999999999999999999999999875543322       249999999999999889999999999999999


Q ss_pred             CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEE
Q 004270          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  582 (764)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~  582 (764)
                      ..++..++++....+++++.++++|++|.++ ..+.|.+||..+..+++.++-. -.|.+..++|+...++.|++|..++
T Consensus       172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~  249 (334)
T KOG0278|consen  172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVY  249 (334)
T ss_pred             eccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEE
Confidence            9999999999999999999999999988766 4678999999999999888744 4699999999999999999999999


Q ss_pred             EEEcCccceEEEE-e-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       583 iwd~~~~~~~~~~-~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .||..+|+.+..+ + ++.+|.|+.|+|||..-|+++.|| +|+||...
T Consensus       250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt~  297 (334)
T KOG0278|consen  250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQTT  297 (334)
T ss_pred             EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEec
Confidence            9999999999886 3 466799999999999999999999 79999864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=6.9e-30  Score=236.05  Aligned_cols=279  Identities=19%  Similarity=0.313  Sum_probs=237.3

Q ss_pred             CCCcceEEEEEeCCeEEEEE-CCeEEEEec-CceEEEecccccceEEEEE---e--CCEEEEEecCCcEEEEEccCCccc
Q 004270           54 QLPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLL---F--GEHILSIDIDGNMFIWAFKGIEEN  126 (764)
Q Consensus        54 ~~~~~I~~~~~~~~~~~~a~-g~~i~vw~~-~~~~~~~~~h~~~v~~l~~---~--g~~l~s~~~dg~v~vWd~~~~~~~  126 (764)
                      .|+..|.++...+...+..+ ++.+++|+. |+...++.||.++|.++++   +  ...+++++.|.++++|.++.++..
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            36778888888766666554 677999997 6778889999999998885   2  346999999999999999988875


Q ss_pred             ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC-------------------------CeEEEEEcCCC
Q 004270          127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWG  181 (764)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~h~  181 (764)
                      ...+....+|...+.++...+++  .++++|+.|.+|.+|+..+                         +.++-++.||.
T Consensus       183 ~~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  183 VKALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             hhHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence            55555556888888889899999  8999999999999999321                         23567789999


Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--ee
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RL  259 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~  259 (764)
                      .+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++..  +..+.+++++|... +|++|+.|..|++||.+++  ..
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc-eeeecCCCCceeecCCCCCCCce
Confidence            9999999999 56899999999999999999999999887  47899999999888 9999999999999999876  33


Q ss_pred             -eeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          260 -QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       260 -~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                       ..++. +|.+.|.++.|+|... .|++++.||++++||++...   ..+..+.+|...|.++.|. ++..+++||.|.+
T Consensus       337 v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  337 VSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK  411 (423)
T ss_pred             eEEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence             34444 9999999999999654 78999999999999998764   3567778999999999998 5668999999999


Q ss_pred             EEEEEe
Q 004270          338 FRLFSV  343 (764)
Q Consensus       338 i~i~d~  343 (764)
                      |+++.-
T Consensus       412 l~i~~~  417 (423)
T KOG0313|consen  412 LRIFKG  417 (423)
T ss_pred             EEEecc
Confidence            999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-30  Score=245.98  Aligned_cols=276  Identities=15%  Similarity=0.314  Sum_probs=237.4

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...|++++|+|..++-+|+.+ .-.+.||+..+.....++. -....|.++.|..||++|+.|+..|.|+++|+.+.   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence            468999999998776666655 3579999998887777666 56788999999999999999999999999985543   


Q ss_pred             ceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                       ..++.+.+|+.++..+.|+| ++..+++|+.|+.+++||+.+...                                  
T Consensus       101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----------------------------------  145 (487)
T KOG0310|consen  101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----------------------------------  145 (487)
T ss_pred             -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------------------
Confidence             57888899999999999999 667778888889899999754210                                  


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                                                         ..+          
T Consensus       146 -------------------------------------------------------------------~~~----------  148 (487)
T KOG0310|consen  146 -------------------------------------------------------------------QAE----------  148 (487)
T ss_pred             -------------------------------------------------------------------EEE----------
Confidence                                                                               011          


Q ss_pred             cCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                             +.+|++.|.+.+++|.+ .+++|||.||.|++||++.. ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus       149 -------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk  220 (487)
T KOG0310|consen  149 -------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK  220 (487)
T ss_pred             -------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence                   13899999999999965 48899999999999999977 88889999999999999999999998864 5899


Q ss_pred             EEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeC
Q 004270          541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       541 v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d  619 (764)
                      |||+-+| +.+..+..|...|||+.+..+++.|++++.|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|..+
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence            9999955 555556669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEE
Q 004270          620 QNGVYL  625 (764)
Q Consensus       620 ~~~i~l  625 (764)
                      |. +.+
T Consensus       301 Gl-v~~  305 (487)
T KOG0310|consen  301 GL-VSI  305 (487)
T ss_pred             ce-eee
Confidence            83 443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-30  Score=232.26  Aligned_cols=291  Identities=21%  Similarity=0.324  Sum_probs=241.8

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC------------c------eeeeeeecccccCeeEEEEecCCCE
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPV  282 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~------------~------~~~~~~~~~h~~~v~~l~~~~~~~~  282 (764)
                      ..|++++.+.+|++||. ++|+|+.|..|+|.|++.            +      -.+.++. .|...|+++.|+|....
T Consensus       109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETI  186 (430)
T ss_pred             eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhhe
Confidence            34589999999999999 999999999999999861            1      2344554 79999999999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      |++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-.++++||+.+.++...           
T Consensus       187 LiS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-----------  253 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-----------  253 (430)
T ss_pred             EEeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence            999999999999999765321 122222 3467899999999999999999999999999987654221           


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                            ..+..+|...|+++.+++.|+..++|
T Consensus       254 ------------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTa  279 (430)
T KOG0640|consen  254 ------------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTA  279 (430)
T ss_pred             ------------------------------------------------------cCcccccccceeEEEecCCccEEEEe
Confidence                                                                  11334677999999999999999999


Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc-----
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-----  516 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----  516 (764)
                      +.||.|++||--+++.+.++.       .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++++..+.+.+     
T Consensus       280 SkDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq  352 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ  352 (430)
T ss_pred             ccCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch
Confidence            999999999999999999887       47765 78999999999999999999999999999999999987652     


Q ss_pred             -ceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          517 -SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       517 -~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                       --+...|+....+++.-.+ .+.+.-||.++...+..+ .||.+.+..+.-||.+.-+++++.|..+|+|--.
T Consensus       353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence             2344567776777776544 578899999988665554 3799999999999999999999999999999643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-28  Score=222.36  Aligned_cols=287  Identities=15%  Similarity=0.212  Sum_probs=241.5

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC--CCcEEE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKM  294 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~i~v  294 (764)
                      +.+.. ..+.|.++.|+++|. +|++++.|..+++||..+++.+.++. .+.-.+..++|......++.++.  |.+||.
T Consensus         8 k~f~~-~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    8 KVFRE-TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccc-CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEE
Confidence            34433 367899999999999 88888999999999999999999998 77788999999888888887776  899999


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      .++..+    +.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+..                    
T Consensus        85 Lsl~dN----kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--------------------  140 (311)
T KOG1446|consen   85 LSLHDN----KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--------------------  140 (311)
T ss_pred             EEeecC----ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--------------------
Confidence            999877    78999999999999999999889999999999999999986654433221                    


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                                                        ..-..++++|.|-++|++...+.|++||++
T Consensus       141 --------------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen  141 --------------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             --------------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence                                                              344567999999999999999999999998


Q ss_pred             CCcc--cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc----ceEEEEEeecCC
Q 004270          455 SGIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNG  528 (764)
Q Consensus       455 ~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~  528 (764)
                      +-..  ...+..     ..+.....+.+.|+|+|++++.+...+.+++.|.-+|..+..+....    -....+|+||++
T Consensus       171 s~dkgPF~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  171 SFDKGPFTTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             ccCCCCceeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            6422  222221     11456788999999999999999999999999999999988887652    225788999999


Q ss_pred             EEEEEeCCCeEEEEEccCCeEEEEeec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          529 LLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       529 ~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      ++.+|++||+|++|+++++..+..+++ +.+++.++.|+|.-.+++|+  +..+.+|=..
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            999999999999999999999999999 78999999999976666655  5678888654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-29  Score=252.44  Aligned_cols=278  Identities=20%  Similarity=0.343  Sum_probs=240.5

Q ss_pred             EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       185 ~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      .-+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||..+.+.+..+.
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccccc
Confidence            345677 4467888775 57999999999876666665 78999999999999 99999999999999999999999998


Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      ..|...|.+++|.  +..+.+|+.|+.|..+|++......   ..+.+|...|..+.|++|++++++|+.|+.+.|||..
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            4499999999997  6689999999999999998775332   2478999999999999999999999999999999962


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      ....                                                                            
T Consensus       332 ~~~p----------------------------------------------------------------------------  335 (484)
T KOG0305|consen  332 SPEP----------------------------------------------------------------------------  335 (484)
T ss_pred             Cccc----------------------------------------------------------------------------
Confidence            2111                                                                            


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEe--CCCeEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAG--YHGDIKVW  501 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~--~dg~v~iw  501 (764)
                                                        ...+        ..|..+|.+++|+| ...+||+|+  .|++|++|
T Consensus       336 ----------------------------------~~~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  336 ----------------------------------KFTF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             ----------------------------------cEEE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence                                              1111        28999999999999 456788876  79999999


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEE--eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      |..+++.+..+.....|..+.|++..+-++++  ..++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.
T Consensus       374 n~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE  453 (484)
T KOG0305|consen  374 NTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE  453 (484)
T ss_pred             EcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence            99999999999999999999999998766654  4577999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCcc
Q 004270          580 SLRIWDVILA  589 (764)
Q Consensus       580 ~i~iwd~~~~  589 (764)
                      ++++|++-..
T Consensus       454 Tlrfw~~f~~  463 (484)
T KOG0305|consen  454 TLRFWNLFDE  463 (484)
T ss_pred             cEEeccccCC
Confidence            9999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=243.38  Aligned_cols=285  Identities=22%  Similarity=0.384  Sum_probs=248.1

Q ss_pred             eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (764)
                      ...+. .|.+.+..+.|.++...|++|+.|..|++|+.....  ......+.|..++++++.|.++++++++++.|+.++
T Consensus       168 ~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  168 LFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            33444 899999999999998899999999999999877654  456778888999999999999999999999999999


Q ss_pred             EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (764)
Q Consensus       340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (764)
                      +|++...+....++                                                                  
T Consensus       245 ~Wnvd~~r~~~TLs------------------------------------------------------------------  258 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLS------------------------------------------------------------------  258 (459)
T ss_pred             eeeccchhhhhhhc------------------------------------------------------------------
Confidence            99997765544432                                                                  


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                        +|...|+++.|......++.|+.|.+|+.||++......++.         ....+..|+.+  ...++++-.|++|+
T Consensus       259 --GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  259 --GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVR  325 (459)
T ss_pred             --ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceE
Confidence              577899999999888889999999999999999987777653         34456666665  45788999999999


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC----CCCeeEEEEcCCCcEEEEE
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h----~~~i~~l~~s~dg~~l~s~  575 (764)
                      +||.++..+....+.++.|+++..++++..|.+.+.|.++.+.|+.+.+....+.+.    ....+.+.|||++.|+++|
T Consensus       326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence            999999999999999999999999999999999999999999999999888887642    2348899999999999999


Q ss_pred             eCCCcEEEEEcCccceEEEEeeCC---ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          576 GMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       576 s~dg~i~iwd~~~~~~~~~~~~~~---~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      |.||.|+||++.++++...+....   .|++++|+|.|..|++++.+. .+.+|.
T Consensus       406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~  459 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT  459 (459)
T ss_pred             cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence            999999999999999998886533   499999999999999999988 699994

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=8e-31  Score=244.79  Aligned_cols=276  Identities=19%  Similarity=0.348  Sum_probs=240.6

Q ss_pred             CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      |.+.+..+.|-++.. .|++|+.|..|++|+....+  .+.++. +..++|+++.|.++++.+++++.|+.+++|+++..
T Consensus       174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            478899999999876 79999999999999987776  666666 77889999999999999999999999999998876


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                          +...++.||.+.|+++.|......+++|+.|.+++.||+....+..++...                         
T Consensus       252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-------------------------  302 (459)
T KOG0288|consen  252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-------------------------  302 (459)
T ss_pred             ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-------------------------
Confidence                778888999999999999987767999999999999999876655443211                         


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                                                  +.+..++.+  +..+++|..|+.|++||.++.....
T Consensus       303 --------------------------------------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  303 --------------------------------------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             --------------------------------------------ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence                                                        233333333  5678889999999999999999888


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-----cceEEEEEeecCCEEEEEeC
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~  535 (764)
                      ..+        . .+.|+++..++++..+.+++.|.++.+.|+++.+....+...     ...+.+.|||++.|+|+|+.
T Consensus       337 sv~--------~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  337 SVP--------L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             Eee--------c-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            874        3 459999999999999999999999999999999988887543     66899999999999999999


Q ss_pred             CCeEEEEEccCCeEEEEeecCCCC--eeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270          536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~~~h~~~--i~~l~~s~dg~~l~s~s~dg~i~iw  584 (764)
                      ||.|+||++.++++...+......  |++++|+|.|.+|++++.++.+.+|
T Consensus       408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999998875544  9999999999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.3e-29  Score=218.65  Aligned_cols=279  Identities=14%  Similarity=0.167  Sum_probs=239.0

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd  253 (764)
                      +.+++|.+.|.+++|+-+|..|++|+.|+++.+|++..++...... .+|.+.|-.++|+|....++++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999999876555443 344678999999998888999999999999999


Q ss_pred             CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      ++.+++...+.  ..+.=.-+.|+|+|.+++.++.|..|...|....    +.... ......+..++|+-++.+++...
T Consensus        94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence            99999999887  3444456889999999999999999999987665    22222 24456678889998788887777


Q ss_pred             CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (764)
Q Consensus       334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (764)
                      ..|.|.|.....-+....                                                              
T Consensus       167 GlG~v~ILsypsLkpv~s--------------------------------------------------------------  184 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQS--------------------------------------------------------------  184 (313)
T ss_pred             CCceEEEEeccccccccc--------------------------------------------------------------
Confidence            789999987653332222                                                              


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (764)
                            ...|+....|+.|+|+|+++++|+.|..+.+||++.....+.+.        .+.-+|+.+.|+.+|++|++++
T Consensus       185 ------i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  185 ------IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             ------cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence                  22466888999999999999999999999999999998888886        7899999999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC
Q 004270          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  536 (764)
Q Consensus       494 ~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (764)
                      .|..|-|=+.++|..+..++..++...++|+|...+||.+++|
T Consensus       251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999999999999999999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=242.42  Aligned_cols=279  Identities=20%  Similarity=0.296  Sum_probs=236.4

Q ss_pred             CCCeEEEEEcCCCCE-EEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270          181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~  259 (764)
                      ...|++++|+|...+ +|+.+ .-.+.||+..+.....++... +..|.++.|..||+ +|++|+..|.|+|||+.+...
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHH
Confidence            578999999996543 44444 357999999988777766654 67899999999999 999999999999999877777


Q ss_pred             eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCc
Q 004270          260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA  337 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~  337 (764)
                      +..+. +|+.+|..+.|+|.+ ..+++|+.|+.+++||+++.    .....+.+|..-|.|.+++| ++..++|||.||.
T Consensus       103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen  103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence            78887 999999999999965 47788888999999999876    34567889999999999999 5668899999999


Q ss_pred             EEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          338 FRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       338 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      |++||++.. ....++                                                                
T Consensus       178 vrl~DtR~~~~~v~el----------------------------------------------------------------  193 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVEL----------------------------------------------------------------  193 (487)
T ss_pred             EEEEEeccCCceeEEe----------------------------------------------------------------
Confidence            999999865 222222                                                                


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                           .|..+|..+.+-|.|..+++++. ..|++||+.+|.......       ..|...|+|+.+..++..|++++-|+
T Consensus       194 -----nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  194 -----NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             -----cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeeccccc
Confidence                 34588999999999999888754 479999999655444332       25999999999999999999999999


Q ss_pred             eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                      .|++||+.+-+.+..+...++|.+++.+|++..+++|..||.+.+-+.
T Consensus       261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence            999999999999999999999999999999999999999998877643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.5e-29  Score=249.89  Aligned_cols=269  Identities=18%  Similarity=0.232  Sum_probs=235.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      +.|++|... .|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|.+++
T Consensus       189 n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la  267 (484)
T KOG0305|consen  189 NVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA  267 (484)
T ss_pred             CeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence            467777554 5999999999877776666899999999999999999999999999999999999999986799999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeee-eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      |.  +. .+.+|+.++.|..+|++..+.... +. +|...|..+.|++|+.++++|+.|+.+.|||....    .....+
T Consensus       268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~  339 (484)
T KOG0305|consen  268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF  339 (484)
T ss_pred             cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence            98  33 899999999999999998866655 55 89999999999999999999999999999988443    566677


Q ss_pred             cCCCCCCeeEEEec-CCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       311 ~~h~~~v~~i~~~~-~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      ..|.+.|..++|+| ....||+|+  .|+.|++||+.++.....+..                                 
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---------------------------------  386 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---------------------------------  386 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------
Confidence            89999999999999 667888875  699999999987766555422                                 


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCcccceecCc
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM  465 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~~  465 (764)
                                                          ...|..+.|++..+-+++  |+.++.|.+|+..+......+.  
T Consensus       387 ------------------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--  428 (484)
T KOG0305|consen  387 ------------------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--  428 (484)
T ss_pred             ------------------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence                                                288999999999977765  5677899999999988887775  


Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  506 (764)
                            +|...|..++++|||..+++|+.|.++++|++-..
T Consensus       429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                  99999999999999999999999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=257.19  Aligned_cols=300  Identities=16%  Similarity=0.247  Sum_probs=219.7

Q ss_pred             CCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC----------CCCEEEEEEee---C
Q 004270          170 TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---D  235 (764)
Q Consensus       170 ~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~---d  235 (764)
                      .....+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+...+.. ......          .+.+..+.-++   .
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhhhccccCcccccccccc
Confidence            334456666 89999999999999999999999999999998764431 111110          01111111111   0


Q ss_pred             CC-CEEEEEeCCCcEEEEECC----CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270          236 GQ-PLLASGASSGVISIWNLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       236 ~~-~~l~sg~~dg~i~iwd~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      ++ ...-.+..... .+.+..    ..+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++...    .++..+
T Consensus       334 ~~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F  406 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF  406 (712)
T ss_pred             ccccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE
Confidence            11 01112222223 222222    236677777 999999999999776 8999999999999988766    567666


Q ss_pred             cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          311 SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       311 ~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                       .|..-|+|++|+| |.+++++|+-|+.+|+|++...+..                                        
T Consensus       407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----------------------------------------  445 (712)
T KOG0283|consen  407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----------------------------------------  445 (712)
T ss_pred             -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----------------------------------------
Confidence             7999999999999 9999999999999999998654322                                        


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                    .|.               .-..-|++++++|+|++.++|+-+|.+++|+....+......-.....
T Consensus       446 --------------~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  446 --------------DWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             --------------eeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence                          121               112789999999999999999999999999998777665543211111


Q ss_pred             -cccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          470 -NYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       470 -~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                       ...|. .|+++.|.|.. ..++..+.|..|||+|.....++..+++.   ..-....|+.||++|+++++|..|++|+.
T Consensus       497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  497 KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence             11233 89999999744 45778889999999999888888888755   44466789999999999999999999998


Q ss_pred             cCCe
Q 004270          545 VALR  548 (764)
Q Consensus       545 ~~~~  548 (764)
                      ....
T Consensus       576 ~~~~  579 (712)
T KOG0283|consen  576 DSFN  579 (712)
T ss_pred             CCCc
Confidence            6543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6e-29  Score=236.36  Aligned_cols=317  Identities=18%  Similarity=0.244  Sum_probs=248.9

Q ss_pred             CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  282 (764)
                      ..+.+||+++|....++++.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+|+|.+
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~   95 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASSNLGYF   95 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecCCCceE
Confidence            5699999999999999987522222333322 234345444456689999987665444222 35788999999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      |+.|+..+.+++|.+.++    .++..+.+|..+|+|+.|+.||.+|++||.||.|.+|++..-                
T Consensus        96 l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----------------  155 (476)
T KOG0646|consen   96 LLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----------------  155 (476)
T ss_pred             EEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----------------
Confidence            999989999999999887    788888999999999999999999999999999999997421                


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                                                   +.+
T Consensus       156 -----------------------------------------------------------------------------v~a  158 (476)
T KOG0646|consen  156 -----------------------------------------------------------------------------VSA  158 (476)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         111


Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEE
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK  520 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~  520 (764)
                      ..++        +-.....+        ..|.-+|+.+...+.  ..+++|++.|.++++||+..+.++.++..+..+.+
T Consensus       159 ~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~a  222 (476)
T KOG0646|consen  159 DNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKA  222 (476)
T ss_pred             ccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCccee
Confidence            1111        11122222        289999999988765  46899999999999999999999999999999999


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEccCC----------------eEEEEeecCCC--CeeEEEEcCCCcEEEEEeCCCcEE
Q 004270          521 IVYHRVNGLLATVADDLVIRLFDVVAL----------------RMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLR  582 (764)
Q Consensus       521 ~~~s~~~~~la~~~~d~~i~v~d~~~~----------------~~~~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~i~  582 (764)
                      ++..|.++.+.+|+.+|.|.+.++...                ..+..+.||.+  +|++++.+-||..|++|+.||.|+
T Consensus       223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC  302 (476)
T ss_pred             EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence            999999999999999999999887543                23566889998  999999999999999999999999


Q ss_pred             EEEcCccceEEEEe-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270          583 IWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  634 (764)
Q Consensus       583 iwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~  634 (764)
                      |||+.+.++++++. ..++|+.+.+.|=-+-...+......+..|.++.+-.+
T Consensus       303 vWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~~  355 (476)
T KOG0646|consen  303 VWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIPN  355 (476)
T ss_pred             EEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCCc
Confidence            99999999999988 67789999997643333332222225777887765554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=5.9e-29  Score=238.52  Aligned_cols=302  Identities=18%  Similarity=0.275  Sum_probs=237.4

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i  292 (764)
                      ..+.++ ...|+++++.|.|. .+++|+.|..|++||+...    +....+.......|.+++|++.+..|++.+.....
T Consensus       161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            344444 77899999999999 8999999999999998654    33444444566789999999999999888888899


Q ss_pred             EEEEecCCC------C--CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          293 KMWIFDTTD------G--DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       293 ~vw~~~~~~------~--~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      +++|-+...      +  -.+-+...+||...++|.+|+| +...+++++.||++|+|++...+...+...         
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---------  309 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---------  309 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence            999865431      1  1111234468999999999999 556799999999999999976542221110         


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                           -....+..-.++.++|+++|+.++.|+
T Consensus       310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC  336 (641)
T ss_pred             -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence                                                                 111123447889999999999999999


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-eeeeEe---cCcc
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCS  517 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~---~~~~  517 (764)
                      .||.|.+|+..+......+.     ...+|..  .|++|.|+++|++|++-+.|+++++||++..+ ++....   ...+
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cCCceeeeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            99999999986544433332     1247877  99999999999999999999999999998653 343332   2367


Q ss_pred             eEEEEEeecCCEEEEEeC------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      -+.++|||+.+++++|..      .|.+.+||..+...+.++.-....|..+.|+|.-+.|+.++.||+++||==+
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            788999999999999864      5789999999999999988888889999999998889999999999988544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=9.4e-29  Score=222.12  Aligned_cols=292  Identities=19%  Similarity=0.319  Sum_probs=243.4

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC--------------CCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      .|.+++.+.+|++||.++++|+.|.+|++.|++..              .....+++.+..|..+|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            79999999999999999999999999999998721              1112467888899999999999999999999


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ++.|+++++||+......+.+..                                                         
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~---------------------------------------------------------  212 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKV---------------------------------------------------------  212 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHH---------------------------------------------------------
Confidence            99999999999865433222110                                                         


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                           +    ....++.++.|+|.|.++++|+.-..+++||+.+-+....-.     ....|.+.|+++.+++.+++.++
T Consensus       213 -----~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT  278 (430)
T KOG0640|consen  213 -----F----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT  278 (430)
T ss_pred             -----h----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence                 0    112689999999999999999999999999999877655432     12489999999999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC--C---CeeEE
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF  563 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~--~---~i~~l  563 (764)
                      ++.||.|++||--+++++.++..   ...|.+..|..+++++.+.+.|..+++|.+.+++++.++.|..  +   --+..
T Consensus       279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA  358 (430)
T KOG0640|consen  279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA  358 (430)
T ss_pred             eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence            99999999999999999988853   3789999999999999999999999999999999999988641  1   23455


Q ss_pred             EEcCCCcEEEEEeC-CCcEEEEEcCccceEEEE--eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          564 CFSEDGKWLLSSGM-DGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       564 ~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .|+....|++.-.+ .+.+.-||..++..+..+  .+...+..+.-||.+.-+.|++.|- .+++|--+
T Consensus       359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr  426 (430)
T KOG0640|consen  359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR  426 (430)
T ss_pred             hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence            68888888886653 467999999998766544  4555699999999999999999998 59999754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.1e-28  Score=253.79  Aligned_cols=281  Identities=22%  Similarity=0.377  Sum_probs=243.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      +...+.+..|.  ..++++++.+++|++|+..++..+.. +.+ |.+.|.+++|..-+. +|++|+.|.++++||..+|+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence            56778888888  56899999999999999999999988 555 589999999987444 99999999999999999999


Q ss_pred             eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcE
Q 004270          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  338 (764)
                      +...+. +|.+.|.++...  ...+++|+.|.+|++|+++.+    ..+..+.+|..+|+++..+  +.++++|+.|++|
T Consensus       283 C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  283 CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            999999 999999999874  447888999999999999865    6788888899999999997  7799999999999


Q ss_pred             EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (764)
Q Consensus       339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (764)
                      ++|++.+.+....                                                                   
T Consensus       354 ~VW~~~~~~cl~s-------------------------------------------------------------------  366 (537)
T KOG0274|consen  354 KVWDPRTGKCLKS-------------------------------------------------------------------  366 (537)
T ss_pred             EEEEhhhceeeee-------------------------------------------------------------------
Confidence            9999764433222                                                                   


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (764)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v  498 (764)
                                                                 +        .+|...|.++.+.+. ..+++|+.|++|
T Consensus       367 -------------------------------------------l--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  367 -------------------------------------------L--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             -------------------------------------------e--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence                                                       2        389999999988865 789999999999


Q ss_pred             EEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-CCCCeeEEEEcCCCcEEEEEe
Q 004270          499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      ++||+.+. +++..+.++..+. ..+...+++|++++.|++|++||..++++++.+.+ |...|+.+++.  ...+++++
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~  471 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS  471 (537)
T ss_pred             EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence            99999999 9999998885544 33444588999999999999999999999999999 77889999887  45688889


Q ss_pred             CCCcEEEEEcCccceEEEE
Q 004270          577 MDGSLRIWDVILARQIDAI  595 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~  595 (764)
                      .|+++++||+++++++..+
T Consensus       472 ~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCCeeEEEecccCchhhhh
Confidence            9999999999999988766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.1e-27  Score=213.72  Aligned_cols=295  Identities=12%  Similarity=0.184  Sum_probs=237.0

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC--CCc
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV  248 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~--dg~  248 (764)
                      .++.+.|......|.++.|+++|.+|++++.|..++|||..+++.+.++... +-.+..+.|..... .++.++.  |.+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t   81 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence            3445556667889999999999999999999999999999999999999876 56788899987766 4555554  889


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      |+..++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++.......+      +...-..++|.|+|-.
T Consensus        82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI  154 (311)
T ss_pred             eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence            9999999999999999 99999999999999999999999999999999866443222      2334456789999999


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      ++++.....|++||++.-..-                         |.                                
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkg-------------------------PF--------------------------------  177 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKG-------------------------PF--------------------------------  177 (311)
T ss_pred             EEEecCCCeEEEEEecccCCC-------------------------Cc--------------------------------
Confidence            999888879999998753210                         11                                


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (764)
                            ..+....+.....+.+.|||||+++++++..+.+++.|.-+|.....+.....     ...--....|.||+++
T Consensus       178 ------~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-----~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  178 ------TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-----AGNLPLSATFTPDSKF  246 (311)
T ss_pred             ------eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC-----CCCcceeEEECCCCcE
Confidence                  11111113347788999999999999999999999999999998888763111     1111256789999999


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                      +++|+.||+|.+|+++++..+..+...  .++.++.|+|...++++++.  .+.+|=.
T Consensus       247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p  302 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLP  302 (311)
T ss_pred             EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEec
Confidence            999999999999999999999999874  88999999998777777654  5556643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-27  Score=233.42  Aligned_cols=535  Identities=15%  Similarity=0.217  Sum_probs=308.2

Q ss_pred             eEEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeE--ecCCccccEEEEeCCCCCCEEEEEeC
Q 004270           85 QVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHV--KLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        85 ~~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                      .+..+.+|...|+.+.|   +...|++|+.|..|+||.+..+-........+  ......+.++-|||...  -|+..+.
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD--gil~s~a  148 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD--GILASGA  148 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC--ceEEecc
Confidence            46668999999999986   57899999999999999998443311111122  22233344555999884  4555557


Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .|.++|||+.+++.+.++.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|....=..+.|..+-..
T Consensus       149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r  228 (1012)
T KOG1445|consen  149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER  228 (1012)
T ss_pred             CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence            78999999999999999999999999999999999999999999999999885 45666665543334456777766554


Q ss_pred             EEEEEeC---CCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCC----------
Q 004270          239 LLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD----------  303 (764)
Q Consensus       239 ~l~sg~~---dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~----------  303 (764)
                      ++-+|-.   -..|++||.+.. ..++++.......|.---|.||.++|+-++ .++.+..+.+......          
T Consensus       229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle  308 (1012)
T KOG1445|consen  229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE  308 (1012)
T ss_pred             hhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch
Confidence            5555542   357899998764 455555533445666667888888666555 3566666643221000          


Q ss_pred             ---------------------ceee----------------------------------------EeccCCCCCCeeEEE
Q 004270          304 ---------------------PRLL----------------------------------------RFRSGHSAPPLCIRF  322 (764)
Q Consensus       304 ---------------------~~~~----------------------------------------~~~~~h~~~v~~i~~  322 (764)
                                           .+.+                                        ..+.|....|..+..
T Consensus       309 ~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl  388 (1012)
T KOG1445|consen  309 EQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSL  388 (1012)
T ss_pred             hhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccccc
Confidence                                 0000                                        000000001111111


Q ss_pred             e------------------------------------------------cC--CCEEEEEeCCCcEEEEEeecccc----
Q 004270          323 Y------------------------------------------------AN--GRHILSAGQDRAFRLFSVIQDQQ----  348 (764)
Q Consensus       323 ~------------------------------------------------~~--~~~l~s~~~dg~i~i~d~~~~~~----  348 (764)
                      .                                                ||  .+.-+.  ....+|-.+.+..+.    
T Consensus       389 ~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g~  466 (1012)
T KOG1445|consen  389 APAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENGV  466 (1012)
T ss_pred             CchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccCc
Confidence            0                                                00  000000  001112121111100    


Q ss_pred             -----cccccchhhh--HHH--------hhcc--chhhh---hccCceeEeeecccccccc-------cceeEeeeCC--
Q 004270          349 -----SRELSQRHVA--KRA--------RKLK--MKEEE---LKLKPVIAFDCAEIRERDW-------CNVVTCHMDT--  399 (764)
Q Consensus       349 -----~~~~~~~~~~--~~~--------~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--  399 (764)
                           .....++...  ..+        +...  ...+.   ..+.|...-..-..+....       +.+....+-.  
T Consensus       467 ~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~  546 (1012)
T KOG1445|consen  467 HTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPK  546 (1012)
T ss_pred             cCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccccccccccccc
Confidence                 0000000000  000        0000  00000   0000000000000000000       0000000000  


Q ss_pred             ----ceEEEEEccceeec---cee--ecCC-CCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCccc-ceecCcc
Q 004270          400 ----AQAYVWRLQNFVLG---EHI--LRPC-PENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISR-GSYLDMS  466 (764)
Q Consensus       400 ----~~~~~w~~~~~~~~---~~~--~~~~-~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~-~~~~~~~  466 (764)
                          +.+.-+.--.+..+   .++  ++.. ...++...  -|..+..++++  .+..|.|.+|++...-.+ .....  
T Consensus       547 s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p--  622 (1012)
T KOG1445|consen  547 SCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP--  622 (1012)
T ss_pred             ceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc--
Confidence                00000000000000   000  0000 00011111  22333445554  456789999998653222 11110  


Q ss_pred             ccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCC-------eeeeEecC-cceEEEEEee-cCCEEEEEeCC
Q 004270          467 ERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRD-------LKSRWEVG-CSLVKIVYHR-VNGLLATVADD  536 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d  536 (764)
                         ..-....|+.+.|+| |...|+.++.||.|++|.+..+.       ....+..+ ..|+++.|+| ....|++++.|
T Consensus       623 ---~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  623 ---GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             ---ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence               013456799999999 66889999999999999987552       33344444 7899999999 56789999999


Q ss_pred             CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce-EEEEeeC--CceEEEEEcCCCCeE
Q 004270          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHVD--VSITALSLSPNMDVL  613 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--~~v~~l~~sp~g~~l  613 (764)
                      .+|++||+.+++....+.||++.|.+++|||||+.+|+.+.||+|+||+-.+++. +..-++.  ..--.+.|.-||+++
T Consensus       700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence            9999999999999999999999999999999999999999999999999887643 3332222  235678888899999


Q ss_pred             EEEEeCCC---eEEEEeccc
Q 004270          614 ATAHVDQN---GVYLWVNRC  630 (764)
Q Consensus       614 at~~~d~~---~i~lW~~~~  630 (764)
                      ++.+-|..   .|.+|+-+.
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             EEecccccchhhhhhhhhhh
Confidence            99887752   366676543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3e-28  Score=228.90  Aligned_cols=282  Identities=18%  Similarity=0.331  Sum_probs=247.5

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (764)
                      ..+.++...|... .+.+|+.|..+.++|...++.+..+. ||.-.|+.+.|+|+...+++++.|..|++|......   
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---  294 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---  294 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence            4678888888744 89999999999999999999999999 999999999999999999999999999999776553   


Q ss_pred             eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                       .......|..+|+.+..+|.|.||++++.|++..+.|++++.+....+..                             
T Consensus       295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------------------------  344 (506)
T KOG0289|consen  295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-----------------------------  344 (506)
T ss_pred             -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------------------
Confidence             34445689999999999999999999999999999998877654332210                             


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (764)
                                                           ...-.+++.+|+|||..+.+|+.||.+++||+.++.....|. 
T Consensus       345 -------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-  386 (506)
T KOG0289|consen  345 -------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-  386 (506)
T ss_pred             -------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence                                                 112568999999999999999999999999999999888886 


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF  542 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~  542 (764)
                             +|.++|..++|+.+|-+|++++.|+.|++||++..+...++...  .++.++.|.+.|.+|++++.|-.|+++
T Consensus       387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence                   89999999999999999999999999999999999888888776  469999999999999999877777777


Q ss_pred             Ec--cCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       543 d~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +-  ..+..+..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus       460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            63  356788889999999999999999999999999999998864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=222.20  Aligned_cols=307  Identities=18%  Similarity=0.357  Sum_probs=260.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .+|++...++++.      .++++.+.||...|+.++.......+.+++.|.+.+||.+++|+++.++.+| .+.|.++.
T Consensus       125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik  197 (481)
T KOG0300|consen  125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK  197 (481)
T ss_pred             chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence            3577777777632      3567788999999999999888889999999999999999999999999876 89999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEEC------CC------------------------------c----eeeeeeecccccCe
Q 004270          232 FSSDGQPLLASGASSGVISIWNL------EK------------------------------R----RLQSVIREAHDNAI  271 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~------~~------------------------------~----~~~~~~~~~h~~~v  271 (764)
                      |++.+. ++++++.|++-.||..      ..                              +    .++..+. +|.+.|
T Consensus       198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV  275 (481)
T KOG0300|consen  198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV  275 (481)
T ss_pred             eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence            999998 9999999999999962      10                              0    1233444 899999


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~  351 (764)
                      .+..|...|+.+++++.|.+..+||++++    .++..+.||....+.++-+|..+++++.+.|.++++||++..     
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----  346 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----  346 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----
Confidence            99999999999999999999999999987    688889999999999999999999999999999999997521     


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                                                                                                 |.+++
T Consensus       347 ---------------------------------------------------------------------------I~sV~  351 (481)
T KOG0300|consen  347 ---------------------------------------------------------------------------IQSVA  351 (481)
T ss_pred             ---------------------------------------------------------------------------cceee
Confidence                                                                                       11111


Q ss_pred             EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-Ceee
Q 004270          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (764)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  510 (764)
                                        +           |        .+|...|+++.|.-+. .+++|+.|.+|++||+++. .++.
T Consensus       352 ------------------V-----------F--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA  393 (481)
T KOG0300|consen  352 ------------------V-----------F--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA  393 (481)
T ss_pred             ------------------e-----------e--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence                              1           1        3999999999998765 5899999999999999875 5788


Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE----EeecCCCCeeEEEEcCCC--cEEEEEeCCCcEEEE
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW  584 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~----~~~~h~~~i~~l~~s~dg--~~l~s~s~dg~i~iw  584 (764)
                      ++...++++.++.+..+..+|.-.++..|++||+...++.+    .-+||...|++++|..+.  .-|++++.|..+.=|
T Consensus       394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence            99999999999999999999999999999999998765533    345899999999998654  358899999999999


Q ss_pred             EcCcc
Q 004270          585 DVILA  589 (764)
Q Consensus       585 d~~~~  589 (764)
                      .+...
T Consensus       474 ~in~p  478 (481)
T KOG0300|consen  474 KINTP  478 (481)
T ss_pred             Eeccc
Confidence            98653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=215.86  Aligned_cols=264  Identities=22%  Similarity=0.380  Sum_probs=211.5

Q ss_pred             EEEEEcCCeEEEEEccCCc------------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270          196 VAVGCSDGKIHVHNVRYDE------------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (764)
Q Consensus       196 la~g~~dg~i~iwd~~~~~------------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~  263 (764)
                      +++|+....|.=+++.-..            ++..+.. |.+++++++.+  ++ ++|+|+.|-+|+|||+.+...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence            5666666655555543111            1233333 48899999986  66 9999999999999999999999888


Q ss_pred             ecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       264 ~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      . .|.+.|+++.|.++-.  .|++|+.||.|.+|+...    +.++..+.+|.+.|+.++.+|.++..++.+.|+.++.|
T Consensus        80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence            8 8999999999998765  899999999999997654    47899999999999999999999999999999999999


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      ++.+++....+..                                                                   
T Consensus       155 NLV~Gr~a~v~~L-------------------------------------------------------------------  167 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-------------------------------------------------------------------  167 (362)
T ss_pred             hhhcCccceeecc-------------------------------------------------------------------
Confidence            9876543221110                                                                   


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                                                                        .+.  -+.+.|+|.|.+++.++. ..|-+|
T Consensus       168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~  194 (362)
T KOG0294|consen  168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY  194 (362)
T ss_pred             --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence                                                              111  122778888887777666 467788


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE--cCCCcEEEEEeCCC
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG  579 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~--s~dg~~l~s~s~dg  579 (764)
                      .+.+......+..+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..+|.++.+  .|++.||+|+|.||
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            88877777777666666666665 4778889999999999999999999999999999999985  56789999999999


Q ss_pred             cEEEEEcCcc
Q 004270          580 SLRIWDVILA  589 (764)
Q Consensus       580 ~i~iwd~~~~  589 (764)
                      .|+|||+...
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999865

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.8e-28  Score=255.97  Aligned_cols=304  Identities=18%  Similarity=0.244  Sum_probs=245.8

Q ss_pred             cccCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCC--------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          267 HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       267 h~~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      ++..|.++..+|++..++||+  .|+.+++|+.+.-.        ..++.+.....|.+.|+|+.|+|||++|++|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            455789999999999999999  89999999865421        13456677789999999999999999999999999


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .+.+|..........+                                         -...+...+.-|..         
T Consensus        92 ~v~iW~~~~~~~~~~f-----------------------------------------gs~g~~~~vE~wk~---------  121 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVF-----------------------------------------GSTGGAKNVESWKV---------  121 (942)
T ss_pred             eEEEeeecccCCcccc-----------------------------------------cccccccccceeeE---------
Confidence            9999997531000000                                         00001111112221         


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                      .....+|...|..++|+|++.++++++.|++|.+||..+......+.        +|.+.|.++.|+|-|+++++-+.|+
T Consensus       122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdDr  193 (942)
T KOG0973|consen  122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDDR  193 (942)
T ss_pred             EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCCc
Confidence            11223588999999999999999999999999999999997777775        9999999999999999999999999


Q ss_pred             eEEEEECCCCCeeeeEecC-------cceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeEEEEeecCCCCeeEEEE
Q 004270          497 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~  565 (764)
                      +|+||++.+-...+.+..+       .....+.|||||.+|++...    -..+.|.+-.+.+.-..|-||.+++..+.|
T Consensus       194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF  273 (942)
T KOG0973|consen  194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF  273 (942)
T ss_pred             eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence            9999998876666666433       45788999999999998743    347899999999999999999999999999


Q ss_pred             cCC-----Cc------------EEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270          566 SED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       566 s~d-----g~------------~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~lat~~~d~~~i~lW  626 (764)
                      +|.     .+            .+|+||.|++|.||.....+++..+.  ....|..++|+|||..|..++.|| +|.+.
T Consensus       274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i  352 (942)
T KOG0973|consen  274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALI  352 (942)
T ss_pred             ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEE
Confidence            981     11            57899999999999998888876654  355699999999999999999999 69998


Q ss_pred             ecc
Q 004270          627 VNR  629 (764)
Q Consensus       627 ~~~  629 (764)
                      .+.
T Consensus       353 ~Fe  355 (942)
T KOG0973|consen  353 HFE  355 (942)
T ss_pred             Ecc
Confidence            864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=8.2e-28  Score=250.63  Aligned_cols=272  Identities=18%  Similarity=0.327  Sum_probs=238.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +++++++.+++|++||..++..+.. +.+|.+.|.++++..-+++|++|+.|.++++||..+|++...+..+ .+.|.++
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~  297 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCL  297 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEE
Confidence            4799999999999999999999988 9999999999999988889999999999999999999999999865 8889998


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      ...+.   ++++|+.|.+|++|++.++..+..+. +|.++|.++...  +.++++|+.|++|++|++.+.    +++..+
T Consensus       298 ~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----~cl~sl  367 (537)
T KOG0274|consen  298 TIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----KCLKSL  367 (537)
T ss_pred             EccCc---eEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhc----eeeeee
Confidence            87654   78889999999999999999999998 799999999997  779999999999999999855    789999


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      .+|...|.++.+.+. ..+++|+.|++|++||+.+. ++...                                      
T Consensus       368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------------------------------------  408 (537)
T KOG0274|consen  368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------------------------------------  408 (537)
T ss_pred             cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------------------------------------
Confidence            999999999987654 79999999999999998765 22221                                      


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                                                                              +       
T Consensus       409 ------------------------------------------------------------------------l-------  409 (537)
T KOG0274|consen  409 ------------------------------------------------------------------------L-------  409 (537)
T ss_pred             ------------------------------------------------------------------------h-------
Confidence                                                                                    1       


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                       .+|..-+..+.+  .++.|++++.|++|++||..+++++..+...  ..+..+++.  ...+++++.|+.+++||++++
T Consensus       410 -~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  410 -QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             -cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence             266666655554  4678999999999999999999999999884  777777776  578899999999999999999


Q ss_pred             eEEEEeecCC
Q 004270          548 RMVRKFEGHT  557 (764)
Q Consensus       548 ~~~~~~~~h~  557 (764)
                      +..+.+-.+.
T Consensus       485 ~~~~~l~~~~  494 (537)
T KOG0274|consen  485 TLIRTLLSTD  494 (537)
T ss_pred             chhhhhhhcc
Confidence            9988774443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=250.82  Aligned_cols=299  Identities=17%  Similarity=0.256  Sum_probs=220.4

Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      .|.+.|.++.|++||+|||+||.|+.|+||.+....... ...+........+  ..... ..|...-. ..   .....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~~~~~~~~~--~~~s~-~~p~~s~~-~~---~~~~~  336 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGDSSCMYFEY--NANSQ-IEPSTSSE-EK---ISSRT  336 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccccchhhhhh--hhccc-cCcccccc-cc---ccccc
Confidence            899999999999999999999999999999997743311 1110000000000  00000 00100000 00   00000


Q ss_pred             e-eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270          392 V-VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (764)
Q Consensus       392 ~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (764)
                      . .-.+..... ..............+....+|...|..+.||.+ ++|++++.|.+|++|++.....+..|        
T Consensus       337 s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--------  406 (712)
T KOG0283|consen  337 SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--------  406 (712)
T ss_pred             cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--------
Confidence            0 000000011 122222233335556666789999999999975 68999999999999999999999998        


Q ss_pred             ccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          471 YAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       471 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                       .|...|+|++|+| |.+++++|+.||.||+|++...+...-.+.+.-|++++|+|||++.++|+.+|.+++|+....+.
T Consensus       407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence             7999999999999 67999999999999999999999998888999999999999999999999999999999998887


Q ss_pred             EEEeec--C------CCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCCc---eEEEEEcCCCCeEEEEE
Q 004270          550 VRKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAH  617 (764)
Q Consensus       550 ~~~~~~--h------~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---v~~l~~sp~g~~lat~~  617 (764)
                      ...+.-  |      ..+|+.+.|.|.. ..|++.+.|..|||+|..+-.++..|++...   -....|+.||+++++++
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence            665432  1      1279999998743 3466677899999999998899988886443   56788999999999999


Q ss_pred             eCCCeEEEEeccc
Q 004270          618 VDQNGVYLWVNRC  630 (764)
Q Consensus       618 ~d~~~i~lW~~~~  630 (764)
                      .|. .||+|+++.
T Consensus       566 eDs-~VYiW~~~~  577 (712)
T KOG0283|consen  566 EDS-WVYIWKNDS  577 (712)
T ss_pred             cCc-eEEEEeCCC
Confidence            888 599999854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.4e-28  Score=230.49  Aligned_cols=284  Identities=19%  Similarity=0.290  Sum_probs=242.0

Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecc
Q 004270          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~  346 (764)
                      .+.|+++.|+|..+.|++++.|+++++|.++....  ..+..+.--..||.+.+|+|+|. .+++++....+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            46899999999999999999999999999987654  35555556678999999999998 8999999999999999665


Q ss_pred             cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC-CC
Q 004270          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PT  425 (764)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~  425 (764)
                      +....-                                                                  +..++ ..
T Consensus       291 k~~k~~------------------------------------------------------------------~~~g~e~~  304 (514)
T KOG2055|consen  291 KVTKLK------------------------------------------------------------------PPYGVEEK  304 (514)
T ss_pred             cccccc------------------------------------------------------------------CCCCcccc
Confidence            432210                                                                  00011 24


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~  505 (764)
                      .+....+|++++++++.+..|.|.+....++..+..+         .-.+.|..++|+.+++.|+.++.+|.|.+||+..
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            6778899999999999999999999999999999887         4678899999999999999999999999999999


Q ss_pred             CCeeeeEecCcce--EEEEEeecCCEEEEEeCCCeEEEEEccC------CeEEEEeecCCCCeeEEEEcCCCcEEEEEe-
Q 004270          506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-  576 (764)
Q Consensus       506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~d~~i~v~d~~~------~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-  576 (764)
                      ..+++.+...+.+  ++++.|+++.+||+|++.|.|.|||.++      .+++..+..-...|++|+|+||++.||.+| 
T Consensus       376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            9999999877555  6778889999999999999999999654      356777777778899999999999998776 


Q ss_pred             -CCCcEEEEEcCccceEEEEeeCCc----eEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          577 -MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       577 -~dg~i~iwd~~~~~~~~~~~~~~~----v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                       .+..+|+-.+++......+.....    |+|++|||.|.+||.|..+++ |.+|.+.
T Consensus       456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~  512 (514)
T KOG2055|consen  456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH  512 (514)
T ss_pred             ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence             567899999999888877765442    999999999999999999996 9999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.6e-29  Score=229.78  Aligned_cols=292  Identities=15%  Similarity=0.234  Sum_probs=247.2

Q ss_pred             EEEecccccceEEEEEeC---CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCc
Q 004270           86 VATWSRHSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~~g---~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~  162 (764)
                      +..|.||.+.|.+++-.-   ..++||+.||.|++||+...++    ..+++.|.+++..+++...    .+++++.|++
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~~----~~~tvgdDKt  130 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQT----SFFTVGDDKT  130 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEeccc----ceEEecCCcc
Confidence            556899999999999532   5699999999999999999988    7889999999999988873    4888999999


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      |+.|-+.. ..++++.+ .+.+..+.-+..+..+|+++.  .|.|||..-..++.++.-+ ...|.++.|+|-...+|++
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS  205 (433)
T ss_pred             eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence            99999754 58888877 667777877777888898886  5999999999999999877 6789999999998889999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      ++.|+.|.+||++++.+++.+.  -...-+.++|+|.+-.+++|+.|..+..+|+....   +.+....+|...|.++.|
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence            9999999999999999888876  45567889999988889999999999999887654   567777899999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      +|.|+.+++|+.|.+|+||.+..+.....+..                                                
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------  312 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------  312 (433)
T ss_pred             CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence            99999999999999999999876543222111                                                


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                         .....|.++.||.|.+|+++|+.|+.|++|.....+....+
T Consensus       313 -------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  313 -------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             -------------------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence                               01167899999999999999999999999998765554443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.4e-29  Score=228.61  Aligned_cols=286  Identities=14%  Similarity=0.213  Sum_probs=239.0

Q ss_pred             EEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          174 LYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       174 ~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      +..+.+|...|.|++=+|.. ..+|+|+.||.|+|||+....+...+..+ .+.|..|++.. +  .+++++.|.+|+.|
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~-~--~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQ-T--SFFTVGDDKTVKQW  134 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-cCceeeEEecc-c--ceEEecCCcceeee
Confidence            45678999999999999986 78999999999999999999999999887 89999999987 3  57888899999999


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEE
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILS  331 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s  331 (764)
                      -++. .++.++.  -.+.+..+.-+..+..++|+|.  .|.|||....    .++..+.--...+.++.|+| ....|++
T Consensus       135 k~~~-~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  135 KIDG-PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             eccC-Ccceeee--ccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheee
Confidence            9865 4666665  4567778887777888999886  4899987655    45666667778899999999 5567778


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      |+.|++|.+||+++......+...                                                        
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi~~--------------------------------------------------------  229 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVILT--------------------------------------------------------  229 (433)
T ss_pred             eccCCceEEEecccCCccceeeee--------------------------------------------------------
Confidence            889999999999988766554321                                                        


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                                   .....++|+|.+-.+++|..|..++.||+.........-       .+|.++|.+++|+|.|+-+++
T Consensus       230 -------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~-------~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  230 -------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH-------KDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             -------------ccccceecCccccceeeccccccceehhhhhhcccchhh-------cccceeEEEeccCCCcchhcc
Confidence                         445678999988889999999999999998755443332       489999999999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~  548 (764)
                      |+.|.+|+||..+.+.....+...  ..|.++.||.|++++++|++|+.|++|.....+
T Consensus       290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            999999999999988766555444  789999999999999999999999999876443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.5e-27  Score=226.44  Aligned_cols=285  Identities=21%  Similarity=0.255  Sum_probs=237.3

Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE-EE---------------e-ccCCCCEEEEEEeeCC
Q 004270          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TF---------------T-HSMRGAVTALAFSSDG  236 (764)
Q Consensus       174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~---------------~-~~~~~~v~~l~fs~d~  236 (764)
                      ...+..|.-++.+++++|+..++.+++.+|+|.-|++.+++... .+               . ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56678899999999999999999999999999999999887441 11               1 1456789999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (764)
Q Consensus       237 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (764)
                      + +|++|+.|..|.||+.++.+.++.+. +|.+.|.+++|-.....|++++.|+++++|+++..    ..+.++.||...
T Consensus       215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~  288 (479)
T KOG0299|consen  215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG  288 (479)
T ss_pred             c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence            9 99999999999999999999999988 99999999999988889999999999999998876    577788899999


Q ss_pred             CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       317 v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      |..+....-++.+-+|+.|+++++|++....+..                                              
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli----------------------------------------------  322 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI----------------------------------------------  322 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccceee----------------------------------------------
Confidence            9999998888888888899999999984332211                                              


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc----ccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS----NYA  472 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~----~~~  472 (764)
                                             ..++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+++......-...    ...
T Consensus       323 -----------------------frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  323 -----------------------FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             -----------------------eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence                                   1133477888888754 678999999999999999988877664321111    012


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecCcceEEEEEeecCCEEEEEe
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVNGLLATVA  534 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~  534 (764)
                      +...|++++..|...++++|+.+|.|++|-+..+    .++..+...+-|++++|+++|+.+++|.
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence            3348999999999999999999999999999877    5566667779999999999999777764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=8.3e-28  Score=252.45  Aligned_cols=291  Identities=20%  Similarity=0.252  Sum_probs=236.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEE--cCCeEEEEEccC------------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      +...|.++..+|++..+|+|+  .||.++||+.+.            .+.+.+... |.+.|.|+.|+|||+ +||+|++
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence            356789999999999999999  899999998652            123333433 489999999999999 9999999


Q ss_pred             CCcEEEEECCC------------------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       246 dg~i~iwd~~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      |+.|.||....                  -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+.    ..+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~  164 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL  164 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence            99999999772                  13556666 89999999999999999999999999999987655    678


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      ..+.+|...|..+.|.|-|++|++-+.|++|++|++.+-.....+...-                               
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf-------------------------------  213 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF-------------------------------  213 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch-------------------------------
Confidence            8889999999999999999999999999999999976533332222110                               


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec----CCcEEEEECcCCcccceec
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYL  463 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----~g~i~i~~~~~~~~~~~~~  463 (764)
                                                    . ..........+.|||||++|+++..    ...+.+.+-.+...-..+.
T Consensus       214 ------------------------------~-~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv  262 (942)
T KOG0973|consen  214 ------------------------------E-ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV  262 (942)
T ss_pred             ------------------------------h-hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence                                          0 0012366788999999999998744    2377888876666555554


Q ss_pred             CccccccccccCcEEEEEECCC-----CC------------EEEEEeCCCeEEEEECCCCCeeeeEec--CcceEEEEEe
Q 004270          464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH  524 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~i~~~~~s  524 (764)
                              +|.+++.+++|+|.     .+            .+|+|+.|++|-||.....+++.....  ...|..++|+
T Consensus       263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs  334 (942)
T KOG0973|consen  263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS  334 (942)
T ss_pred             --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence                    99999999999882     12            678999999999999987777766543  3899999999


Q ss_pred             ecCCEEEEEeCCCeEEEEEccCC
Q 004270          525 RVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      |||..|.+++.||+|.++..+..
T Consensus       335 pdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  335 PDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCCCeEEEEecCCeEEEEEcchH
Confidence            99999999999999999998754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.1e-28  Score=211.14  Aligned_cols=259  Identities=15%  Similarity=0.278  Sum_probs=216.8

Q ss_pred             eEEEEec--CceEEEe--cccccceEEEEEe---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCC
Q 004270           76 HIAVVKR--AHQVATW--SRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD  148 (764)
Q Consensus        76 ~i~vw~~--~~~~~~~--~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  148 (764)
                      .+.+-+.  ++.+...  -.-.+.+..+++.   .+.+++++.||++++||+.....   |+..++.|...+.++-+++.
T Consensus        39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccc
Confidence            4777775  3334442  2345678888873   67899999999999999544433   67788889999999988887


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCE
Q 004270          149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV  227 (764)
Q Consensus       149 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v  227 (764)
                      .. ..+++++-|++|++|+...++-+.+|.+|...|...+|+|. .+++++++.||.+++||++.......+..| ...+
T Consensus       116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Ei  193 (311)
T KOG0277|consen  116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEI  193 (311)
T ss_pred             cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-ccee
Confidence            75 56777899999999999999999999999999999999995 679999999999999999876555556665 6899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCce
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPR  305 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~  305 (764)
                      .++.|+.-..++|+||+.|+.|+.||+++-+ ++..+. +|.-.|..+.|+|.. ..|++++.|-++++||...++.   
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds---  269 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS---  269 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccchh---
Confidence            9999999888899999999999999998864 566665 999999999999965 5899999999999999876653   


Q ss_pred             eeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270          306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~  343 (764)
                      .+.....|+.-+..+.|++ ++.++++++-|+.+.+|+.
T Consensus       270 ~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  270 AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            4555568999999999998 7889999999999999983

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.6e-27  Score=211.67  Aligned_cols=278  Identities=19%  Similarity=0.298  Sum_probs=222.7

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw  295 (764)
                      ..+.......|.+|+|||....++++|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++|
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            3344555788999999996666888999999999999987 455555555799999999999999999999999999999


Q ss_pred             EecCCCCCceeeEeccCCCCCCeeEEEecCCC--EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      |+.++     .......|.++|.++.|-+...  .|++|+.|.+|+.||.+.......+..+                  
T Consensus       100 DL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP------------------  156 (347)
T KOG0647|consen  100 DLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP------------------  156 (347)
T ss_pred             EccCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc------------------
Confidence            99876     3444568999999999998554  8999999999999999876555443211                  


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                         ..+.++  +--...+++++.+..|.+|++
T Consensus       157 ---------------------------------------------------eRvYa~--Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  157 ---------------------------------------------------ERVYAA--DVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             ---------------------------------------------------ceeeeh--hccCceeEEEecCCcEEEEEc
Confidence                                                               222222  223467899999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CeeeeEecC----------cceEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLKSRWEVG----------CSLVKI  521 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~----------~~i~~~  521 (764)
                      +.+........      ..-+-.+++++..++.+..+.|+-+|.+.+..+..+  +.-..++.|          ..|.++
T Consensus       184 ~n~~te~k~~~------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  184 ENPPTEFKRIE------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             CCCcchhhhhc------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            87654432211      234567899999999988899999999999999876  333333333          357889


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      +|+|.-..|++++.||++.+||-+....+...+.|..+|++.+|+.+|.++|.+.
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            9999999999999999999999998888888899999999999999999988653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=222.82  Aligned_cols=279  Identities=17%  Similarity=0.292  Sum_probs=236.1

Q ss_pred             EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH  221 (764)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~  221 (764)
                      ++...|..  +++++|+.|..+.++|..+++.+..++||...|+.+.++|+...+++++.|-.|+||.............
T Consensus       224 ald~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~  301 (506)
T KOG0289|consen  224 ALDIIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP  301 (506)
T ss_pred             EEeecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc
Confidence            33345554  7899999999999999999999999999999999999999999999999999999999987776555554


Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec-ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                       |.++|+.+..+|.|. +|++++.||+..+.|++++..+..... ...-.+++.+|+|||.+|.+|..|+.+++||+..+
T Consensus       302 -h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  302 -HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             -ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence             489999999999999 888999999999999999998887762 12245899999999999999999999999999877


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      .    .+..+.+|.++|..++|+.+|-+|++++.|+.|++||++..+....+..                          
T Consensus       380 ~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--------------------------  429 (506)
T KOG0289|consen  380 T----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--------------------------  429 (506)
T ss_pred             c----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--------------------------
Confidence            3    5667789999999999999999999999999999999987654333221                          


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC--Ccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--GIS  458 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~--~~~  458 (764)
                                                               .....+.++.|.+.|.++++++.+=.|+++.-.+  ...
T Consensus       430 -----------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~  468 (506)
T KOG0289|consen  430 -----------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE  468 (506)
T ss_pred             -----------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEeccccccee
Confidence                                                     1124789999999999999998877777777443  333


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      ...+        ..|.+..+++.|....+++++++.|..++++.+
T Consensus       469 ~~~~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  469 IKEL--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eehh--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence            3333        378889999999999999999999999988764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=242.41  Aligned_cols=352  Identities=17%  Similarity=0.252  Sum_probs=271.9

Q ss_pred             eCCEEEEEecCCcEEEEEccCCccc--ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEE
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF  177 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~  177 (764)
                      .+++|+|++.||.|++|++....-.  ...+..++.|...+..++..-.+  +.++++|.|-+|++|+...+  -+..++
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence            5788999999999999998654331  12256777888888888877777  68999999999999999877  577888


Q ss_pred             cCCCCCeEEEEE-cCCCCEEEEEEcCCeEEEEEccCC--ceEEEE--------eccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTF--------THSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       178 ~~h~~~i~~~~~-sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~--------~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      ..|..-|.|+++ .++..++|+|+-|+.|.+||+.++  ..+.++        ..++..+|++++..+.|. ++++|+..
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte  192 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE  192 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence            999999999999 888899999999999999999987  233332        224577999999999997 99999999


Q ss_pred             CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                      +.|++||.++++.+..++ +|...|..+..++||..++++|.||+|++||+...    +++.++..|...|.++..+|+=
T Consensus       193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF  267 (735)
T ss_pred             cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence            999999999999999999 99999999999999999999999999999998766    7888889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      .++++|+.||.|..-|+++......+-                                                     
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic-----------------------------------------------------  294 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNPAKSTLIC-----------------------------------------------------  294 (735)
T ss_pred             ceEEecCCCCcEEecccCCchhheEee-----------------------------------------------------
Confidence            999999999999998887652211110                                                     


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                                     ....++..+..+...+-+-+++.|+.|..|...-..                       ++++.+
T Consensus       295 ---------------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~  336 (735)
T KOG0308|consen  295 ---------------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG  336 (735)
T ss_pred             ---------------cCCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence                           011334444444444445677888888888654221                       233333


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~  554 (764)
                      ++.. -+.|......+... .+-..+++..+|...++-.|.+.+++-...|.+.+||+-..+.+..|.
T Consensus       337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            3333 22223333333211 333445556677777888889999999999999999998776666554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=227.71  Aligned_cols=301  Identities=10%  Similarity=0.160  Sum_probs=232.1

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      .--.+++|...|+++++.|.|..+++|+.|..|++||+....    ..+.+.......|.+++|++.|. .+++.+....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aq  237 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQ  237 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcc
Confidence            345678899999999999999999999999999999987432    23333333356899999999998 5555555778


Q ss_pred             EEEEECCCceeeeeee-----------cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEec--cCCC
Q 004270          249 ISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHS  314 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~  314 (764)
                      .+|+|-.........+           .+|...+++.+|+|..+ .+++++.||++|+|+++........+...  .+..
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            9999966554443332           38999999999999764 89999999999999998776544444333  3455


Q ss_pred             CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      -+++.++|++||+.|++|..||+|.+|+.........+                                          
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~------------------------------------------  355 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM------------------------------------------  355 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccce------------------------------------------
Confidence            68899999999999999999999999997432211110                                          


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc-eecCccccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG-SYLDMSERSNYAH  473 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~h  473 (764)
                                           ...........|+++.||++|++|++-+.|+++++||++..+... ....      ...
T Consensus       356 ---------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg------L~t  408 (641)
T KOG0772|consen  356 ---------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG------LPT  408 (641)
T ss_pred             ---------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC------CCc
Confidence                                 011111122589999999999999999999999999998654432 2211      123


Q ss_pred             cCcEEEEEECCCCCEEEEEe------CCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          474 NGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                      ...-+.++|+|+.+++++|.      ..|++.+||..+.+.+..+... ..|..+.|+|.=+.+.+|+.||.++||=
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            34557889999999999986      3578999999999988888776 7899999999999999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.6e-27  Score=210.45  Aligned_cols=280  Identities=18%  Similarity=0.234  Sum_probs=216.4

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       179 ~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      ...+.|.+++||| ...+++.|+.||+||+|+++. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence            3478899999999 556677899999999999986 5666555566789999999999998 899999999999999999


Q ss_pred             ceeeeeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270          257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       257 ~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                      ++....-  .|.++|..+.|.+...  .|+|||.|.+|+.||.+...    .+..+ .-.+.+.++..  ....++.+..
T Consensus       104 ~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen  104 GQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             CCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence            9665554  6999999999998766  89999999999999887553    23222 22344555443  3457888888


Q ss_pred             CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (764)
Q Consensus       335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (764)
                      ++.|.+|+++.+........                                                            
T Consensus       175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------  194 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------  194 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence            99999999976543222110                                                            


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc---cccCcEEEEEECCCCCEEEE
Q 004270          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY---AHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s  491 (764)
                            ....-.+++++.-++....++|+-+|.+.+..+..+.....|.-...+...   +.-..|.+|+|+|....|+|
T Consensus       195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence                  012367899999999998899999999999999887544444322111111   11246889999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEe
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVA  534 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~  534 (764)
                      +|.||++.+||-+....+.+.+ +..+|++.+|+.+|.++|.+.
T Consensus       269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            9999999999988777777654 458999999999999988764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-27  Score=226.40  Aligned_cols=293  Identities=19%  Similarity=0.313  Sum_probs=232.8

Q ss_pred             CcEEEEeCCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h-~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .++.+||+++|....++++- ...-.++..- .+.+++++. ....+.+|.+...........- +++|.+++-+|+|. 
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~-Pg~v~al~s~n~G~-   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL-PGPVHALASSNLGY-   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc-ccceeeeecCCCce-
Confidence            45999999999999999874 1111112111 224566554 4468999998765554422222 68999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-----CCCCceeeEeccCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH  313 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h  313 (764)
                      +|+.|+..|.|++|.+.+|.++..+. +|-..|+++.|+.|+.+++|||.||.|.+|.+-.     .+.....+..+..|
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H  173 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH  173 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence            88888899999999999999999997 9999999999999999999999999999998742     23355678888999


Q ss_pred             CCCCeeEEEecC--CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       314 ~~~v~~i~~~~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      .-+|+.+...+.  ..+++|++.|.++++||+..+.....+.                                      
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--------------------------------------  215 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--------------------------------------  215 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence            999999988764  4689999999999999998775443321                                      


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc--------ceec
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR--------GSYL  463 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~--------~~~~  463 (764)
                                                     .+..+.+++++|-++.+++|+++|.|.+.++......        ....
T Consensus       216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~  264 (476)
T KOG0646|consen  216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE  264 (476)
T ss_pred             -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence                                           2378999999999999999999999999887554311        1122


Q ss_pred             CccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeec
Q 004270          464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRV  526 (764)
Q Consensus       464 ~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~  526 (764)
                      ........+|.+  .|+|++++-||.+|++|+.||.|.|||+.+.++++++. ..++|+.+.+.|-
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            222234468888  99999999999999999999999999999999999998 5689999888663

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=238.45  Aligned_cols=341  Identities=19%  Similarity=0.276  Sum_probs=272.5

Q ss_pred             CCCCEEEEEEcCCeEEEEEccCCce------EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeee
Q 004270          191 PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSV  262 (764)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~  262 (764)
                      |.+++|.+|+.||.|++|+......      +.++.. |..+|..+....+|+ .|++++.|-+|++|+...+  -+..+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence            4567899999999999999875543      444444 488999999999998 7999999999999999877  56677


Q ss_pred             eecccccCeeEEEE-ecCCCEEEEEcCCCcEEEEEecCCCC------CceeeEecc-CCCCCCeeEEEecCCCEEEEEeC
Q 004270          263 IREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       263 ~~~~h~~~v~~l~~-~~~~~~l~s~~~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                      +. .|...|.++++ .++...+++||.|+.|.+||++....      .......+. |+..+|.+++..+.|..+++|+.
T Consensus       113 ir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  113 IR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             hh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            77 89999999999 78888999999999999999986632      111122233 89999999999999999999999


Q ss_pred             CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (764)
Q Consensus       335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (764)
                      .+.+++||.++......+                                                              
T Consensus       192 ek~lr~wDprt~~kimkL--------------------------------------------------------------  209 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKL--------------------------------------------------------------  209 (735)
T ss_pred             ccceEEeccccccceeee--------------------------------------------------------------
Confidence            999999998876544333                                                              


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (764)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (764)
                            .+|...|+++.+++||+.++++++||+|++||+.....+.++.        .|...|.++..+|+-+.+++|+.
T Consensus       210 ------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  210 ------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             ------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcceEEecCC
Confidence                  2677999999999999999999999999999999999999886        89999999999999999999999


Q ss_pred             CCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270          495 HGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       495 dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  573 (764)
                      ||.|..-|+.+ .+....++...++..+..+...+-+-+++.|+.|+-|...-.               .++++.|++..
T Consensus       276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~---------------~~l~~s~~~~~  340 (735)
T KOG0308|consen  276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD---------------IALSVSGDLDF  340 (735)
T ss_pred             CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------cccccCCCCCc
Confidence            99999999998 455666677789999988876666677888888888854321               14555555554


Q ss_pred             EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                       -+.|....+.+.. ..+-..+++..++..-++-.|.+.++|-...|+ +.+||+
T Consensus       341 -~~T~~~~~~~~~~-~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI  392 (735)
T KOG0308|consen  341 -FSTDSNNHSCDLT-NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI  392 (735)
T ss_pred             -ccccCCCcccccc-CCCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence             2334444444432 133444555556777777788888888888885 889987

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=8.4e-26  Score=235.79  Aligned_cols=164  Identities=18%  Similarity=0.294  Sum_probs=138.9

Q ss_pred             EEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc-------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      .+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++.       .+..+.. |...|.+++|+|++..+|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4789999999999999 88999999999999999998653       3455554 4889999999998755999999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEecCC
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG  326 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~  326 (764)
                      .|+|||+++++....+. +|...|.+++|+|++.+|++++.|+.|++||++..    ..+..+.+|... +..+.|.+++
T Consensus       149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence            99999999999888887 89999999999999999999999999999998765    456666788765 3467788887


Q ss_pred             CEEEEEe----CCCcEEEEEeec
Q 004270          327 RHILSAG----QDRAFRLFSVIQ  345 (764)
Q Consensus       327 ~~l~s~~----~dg~i~i~d~~~  345 (764)
                      ..+++++    .|+.|++||+++
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCC
Confidence            7777765    367888888653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.9e-26  Score=208.20  Aligned_cols=274  Identities=15%  Similarity=0.251  Sum_probs=222.8

Q ss_pred             EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (764)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (764)
                      .+.......|+++.|+|.+. .|++++.||.+++||.....+...+.  |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence            34445567899999998888 66667799999999999987777776  999999999987 457999999999999999


Q ss_pred             cCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      ++...     ..+..|..++.|+.+++....+++||.|++|++||.+.......+.+                       
T Consensus        83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----------------------  134 (323)
T KOG1036|consen   83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----------------------  134 (323)
T ss_pred             cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence            88743     33457999999999999888999999999999999876333222211                       


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                                                    ...|.++  +-.|+.|++|+.+..+.+||+++..
T Consensus       135 ----------------------------------------------~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  135 ----------------------------------------------GKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ----------------------------------------------CceEEEE--eccCCEEEEeecCceEEEEEccccc
Confidence                                                          1334444  4458999999999999999998866


Q ss_pred             ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecC----------cceEEEEE
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY  523 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~----------~~i~~~~~  523 (764)
                      ...+..      ...-+-.++++++-|++.-.+.++-||.|.+=.++..    +....++.|          .+|.+++|
T Consensus       167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            544222      1255678999999999888999999999988777655    333333332          68999999


Q ss_pred             eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +|-.+.+|+|+.||.|.+||+.+.+.+..+..-...|.+++|+.||..||.++.
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999999999999888888999999999999998873

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.6e-26  Score=219.41  Aligned_cols=285  Identities=17%  Similarity=0.284  Sum_probs=230.6

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee-eeee----------------cccccCeeEEEEecCCCEE
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVL  283 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~----------------~~h~~~v~~l~~~~~~~~l  283 (764)
                      ..|.-++.+++++|+++ +.++++.+|+|.-|++.+++.. ..+.                ..|...+.+++.++|+++|
T Consensus       139 ~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            34578999999999999 8999999999999999888633 1111                1688899999999999999


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      ++|+.|+.|.||+.++.    ..+..+.+|.+.|.+++|-.....+++++.|+++++|++........            
T Consensus       218 atgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet------------  281 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET------------  281 (479)
T ss_pred             EecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH------------
Confidence            99999999999999887    45666889999999999998888999999999999999754322111            


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (479)
T KOG0299|consen  282 --------------------------------------------------------------------------------  281 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  523 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~  523 (764)
                                                +.+|.+.|.+|.....++.+-.|+.|+++++|++.....+.-..+.+.+.|++|
T Consensus       282 --------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  282 --------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             --------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEE
Confidence                                      148999999999888888777888999999999965555444455578899988


Q ss_pred             eecCCEEEEEeCCCeEEEEEccCCeEEEEeec-C-----------CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--
Q 004270          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--  589 (764)
Q Consensus       524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h-----------~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~--  589 (764)
                      -. ...+++|+++|.|.+|++.+.+++.+..- |           ...|++++..|...++|+|+.+|.|++|-+.+|  
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            75 56789999999999999999988776541 2           227999999999999999999999999999988  


Q ss_pred             --ceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeE-EEEecc
Q 004270          590 --RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGV-YLWVNR  629 (764)
Q Consensus       590 --~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i-~lW~~~  629 (764)
                        .++..+....-|++++|+++|.+++++......+ +-|.++
T Consensus       415 ~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  415 AINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             ccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence              4555566666699999999999777665443224 334443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-25  Score=190.36  Aligned_cols=297  Identities=19%  Similarity=0.294  Sum_probs=231.1

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc------CC--------ceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~------~~--------~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .+..+.. ...|.+++|+|.|.+.|+|+...+.+|-...      .+        ..+..-..+|.+.|.|.+|+|+|+ 
T Consensus        25 ~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-  102 (350)
T KOG0641|consen   25 AINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-  102 (350)
T ss_pred             EEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-
Confidence            3444444 7789999999999999999999998886432      11        123334467799999999999999 


Q ss_pred             EEEEEeCCCcEEEEECCCceee-----eeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          239 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      ++++|+.|.+|++.-.+...+.     ..+. -|.+.|..++|..+    +.+|++++. |..++|..+.+.+  ..+..
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a  178 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHA  178 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--Cccee
Confidence            9999999999999876544221     1233 68999999999754    446676654 4455565554443  45677


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      +.||.+.|.++ ++-+|-.+++|+.|.+|++||++-+.....+....                                 
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~---------------------------------  224 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF---------------------------------  224 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------
Confidence            78999998876 34478899999999999999998766555443210                                 


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                                  ....-..+.|.++++.|.|+++++|-.|....+||++.+..++.+-      
T Consensus       225 ----------------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~------  270 (350)
T KOG0641|consen  225 ----------------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH------  270 (350)
T ss_pred             ----------------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC------
Confidence                                        0000123779999999999999999999999999999999999985      


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                        .|...|.++.|+|...++++++.|..|++-|+...     ..+..-++...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus       271 --phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  271 --PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             --CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence              89999999999999999999999999999998743     12223345588889999999999999999999999976


Q ss_pred             c
Q 004270          545 V  545 (764)
Q Consensus       545 ~  545 (764)
                      .
T Consensus       349 ~  349 (350)
T KOG0641|consen  349 N  349 (350)
T ss_pred             C
Confidence            4

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-27  Score=210.54  Aligned_cols=246  Identities=15%  Similarity=0.231  Sum_probs=212.3

Q ss_pred             EEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           87 ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      ..+..|.++|++++.+|.++|||+.|-+|+|||+.....    +..+..|.+.+..+.|.++...+.|++|+.||.|.+|
T Consensus        37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            347889999999999999999999999999999998887    6777778888888889888865699999999999999


Q ss_pred             eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      +....+++.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-..+...  ...+.+.|+|.|. .++.+.. 
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd-~F~v~~~-  188 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGD-HFVVSGR-  188 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCC-EEEEEec-
Confidence            99999999999999999999999999999999999999999999999987777664  3345599999999 5555554 


Q ss_pred             CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe--c
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY--A  324 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~--~  324 (764)
                      ..|-+|.+++.+....+.  ....+.++.|. ++..|++|+.|+.|++||-+..    .++..+.+|...|..+.+.  |
T Consensus       189 ~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNP  261 (362)
T ss_pred             cEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEecC
Confidence            469999999888777765  33557777776 4558999999999999987763    5677788999999999965  3


Q ss_pred             CCCEEEEEeCCCcEEEEEeeccc
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      ++.+|++++.||.|++||+....
T Consensus       262 ~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  262 EHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CceEEEEeccCceEEEEEccccc
Confidence            67899999999999999998763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=1.8e-27  Score=227.49  Aligned_cols=285  Identities=13%  Similarity=0.238  Sum_probs=243.4

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc--CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      .|..-|.++..+...+.++||+. |.|+|||+...... ..+..+.  ....-+.++...|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-CccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            58889999999999999999885 77999999765322 2222221  23567889999999999999999999999999


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      ...........                                                                  ...
T Consensus       495 AapTprikael------------------------------------------------------------------tss  508 (705)
T KOG0639|consen  495 AAPTPRIKAEL------------------------------------------------------------------TSS  508 (705)
T ss_pred             cCCCcchhhhc------------------------------------------------------------------CCc
Confidence            76543221100                                                                  001


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      .....+++++||.+..+++..||.|.+||+.+...++.|.        +|.+.+.||.++++|..|.||+-|.+||.||+
T Consensus       509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            1345678999999999999999999999999999999986        99999999999999999999999999999999


Q ss_pred             CCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270          504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (764)
Q Consensus       504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i  583 (764)
                      +++..+...+..+.|.++.++|.+.+||+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            9999999999999999999999999999999999999988754 344566779999999999999999999999999999


Q ss_pred             EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      |..+-|..+...+..++|+++.+|-|.++++|++.|.+ ..+|.+
T Consensus       660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYEV  703 (705)
T ss_pred             ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEEE
Confidence            99999999998888889999999999999999999975 666653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=7.8e-27  Score=232.33  Aligned_cols=241  Identities=21%  Similarity=0.330  Sum_probs=205.4

Q ss_pred             EEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccE-EEEeCCCCCCEEEEEeCCCcE
Q 004270           86 VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      -+.+.||+..|..++. ++..++++|.||++++|+-..++...  ...+..+.+++.. .++.+.. ...+++|+.|+.+
T Consensus         7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESD-KGRLVVGGMDTTI   83 (745)
T ss_pred             EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--ceecccCcceeeccceecccc-CcceEeecccceE
Confidence            4558999999999887 77789999999999999987766521  2334556666665 5555532 1469999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      .+|...+..+++.+++|.+.|.|+....++. +++|+.|.++++|-.  ++....+.. |+..|.++++.|++  .++||
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTg  157 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTG  157 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEec
Confidence            9999999999999999999999999888876 999999999999975  555666655 48999999999988  48899


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      +.|.+|++|.-  ++.+.++. +|...|+++++.+++ .+++++.||.|+.|+++.     ..+....+|..-+.++...
T Consensus       158 saDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~  228 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA  228 (745)
T ss_pred             cCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec
Confidence            99999999984  88889998 899999999999886 588999999999998843     4677888999999999988


Q ss_pred             cCCCEEEEEeCCCcEEEEEee
Q 004270          324 ANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .++..++++++|+++++|+..
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC
Confidence            888899999999999999965

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.9e-26  Score=207.06  Aligned_cols=292  Identities=20%  Similarity=0.265  Sum_probs=215.0

Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee--eeee-cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEe
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIF  297 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~-~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~  297 (764)
                      +|.+.|++++|+.||+ .|++++.|+.|++|+++.....  ..++ .-..+-.+.+.|.||.+ .++++-..+++++|.+
T Consensus        84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            4588999999999999 9999999999999999764211  1111 01123468899999987 4455556778999987


Q ss_pred             cCCCCCce--------eeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          298 DTTDGDPR--------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       298 ~~~~~~~~--------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      .......-        -+.....|..++..+-...++.+|.+++.|..|.+|++. ++....+..               
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt---------------  226 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT---------------  226 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc---------------
Confidence            65432111        112334577788888888889999999999999999987 443333221               


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                                                                           ....-...++||||+++++++-.-.|.
T Consensus       227 -----------------------------------------------------nq~~n~~aavSP~GRFia~~gFTpDVk  253 (420)
T KOG2096|consen  227 -----------------------------------------------------NQSSNYDAAVSPDGRFIAVSGFTPDVK  253 (420)
T ss_pred             -----------------------------------------------------ccccccceeeCCCCcEEEEecCCCCce
Confidence                                                                 224456678999999999999999999


Q ss_pred             EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------CeeeeEe-----cCcc
Q 004270          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCS  517 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~-----~~~~  517 (764)
                      +|..--++.-..-.....-.+.+|...|..++|+++.+.+++.+.||++++||++-.       +.+++..     ..+.
T Consensus       254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~  333 (420)
T KOG2096|consen  254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE  333 (420)
T ss_pred             EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence            998732221110001111134699999999999999999999999999999997521       2222221     1244


Q ss_pred             eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ...+.++|+|+.||++. ...+++|..++++....++ .|...|++++|+++|++++|++ |..+++..
T Consensus       334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            55899999999998865 4589999999998877775 5899999999999999999997 77788876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.7e-27  Score=210.84  Aligned_cols=296  Identities=13%  Similarity=0.245  Sum_probs=244.8

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      ++.+.+|...+..++.....  ..+.+++.|.+-+||.+++|+++.++.||.+.|+++.|++.+.++++++.|++-+||.
T Consensus       141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            56677788888777765555  6789999999999999999999999999999999999999999999999999999996


Q ss_pred             cc------C------------------------------C----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          210 VR------Y------------------------------D----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       210 ~~------~------------------------------~----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ..      .                              +    -++..+.. |.+.|.+..|...|+ .+++++.|.+-
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~-Q~vTaSWDRTA  296 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQ-QMVTASWDRTA  296 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcc-eeeeeeccccc
Confidence            21      0                              0    12344444 478899999999998 89999999999


Q ss_pred             EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      .+||++++.++..+. +|....+.++-+|..+++++++.|.+.++||+...   ...+..+.||...|+++.|..+. .+
T Consensus       297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd-~v  371 (481)
T KOG0300|consen  297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD-RV  371 (481)
T ss_pred             eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC-ce
Confidence            999999999999998 99999999999999999999999999999999743   24567788999999999999765 68


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++|+.|.++++||+++.+....                          .+                              
T Consensus       372 VSgSDDrTvKvWdLrNMRsplA--------------------------TI------------------------------  395 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLA--------------------------TI------------------------------  395 (481)
T ss_pred             eecCCCceEEEeeeccccCcce--------------------------ee------------------------------
Confidence            9999999999999976532110                          00                              


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--C
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T  487 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~  487 (764)
                                  ...+++..++++..+..+++-..+..|++||+.........    .....+|...|+|.+|..+.  .
T Consensus       396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c  459 (481)
T KOG0300|consen  396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC  459 (481)
T ss_pred             ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence                        11277888999999999999999999999999865443321    11225899999999997543  3


Q ss_pred             EEEEEeCCCeEEEEECCCC
Q 004270          488 LMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~  506 (764)
                      -|+++|.|..+.-|.+...
T Consensus       460 nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  460 NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccceeeeeEeccc
Confidence            5889999999999998754

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=234.77  Aligned_cols=250  Identities=15%  Similarity=0.203  Sum_probs=193.7

Q ss_pred             EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCc--------eEEEEeccCCCCE
Q 004270          157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV  227 (764)
Q Consensus       157 ~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v  227 (764)
                      |+..+.+++|+......+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++.        .+..+.. |...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence            556788999998888889999999999999999997 7899999999999999998643        2233443 47899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      .+++|+|++..+|++++.|+.|++||+++++....+.  |...|.+++|+|+|.+|++++.|+.|++||++..    ..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence            9999999998677899999999999999998777665  6678999999999999999999999999998765    456


Q ss_pred             EeccCCCCCCeeEE-----EecCCCEEEEEeCCC----cEEEEEeecccc-cccccchhhhHHHhhccchhhhhccCcee
Q 004270          308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       308 ~~~~~h~~~v~~i~-----~~~~~~~l~s~~~dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      ..+.+|.+.+....     |++++.+|++++.|+    .|++||++.... .....                        
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------  258 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------  258 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence            67788988765433     347888999988774    799999874221 11100                        


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                                                .....+.+......++|.++++|..|+.|++|++..+.
T Consensus       259 ------------------------------------------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        259 ------------------------------------------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             ------------------------------------------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence                                                      00111333334445668999999999999999998764


Q ss_pred             ccceecCccccccccccCcEEEEEECCCC
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                      ... +.      ...+..++.+++|.|..
T Consensus       297 ~~~-l~------~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        297 IRK-VN------EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEe-ec------ccccCCCccceEEcccc
Confidence            222 21      12466788899999964

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-25  Score=189.51  Aligned_cols=290  Identities=15%  Similarity=0.233  Sum_probs=229.6

Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC----------CCCcee-eEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~----------~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (764)
                      ....|.+++|+|.|.+.+.|+...+.++..+..-          ...+.. .+..+.|.+.|.|.+|+|+|+++++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            5678999999999999999999999998754321          111122 23345688999999999999999999999


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                      .+|++..+....+...=.                                                              
T Consensus       111 k~ik~l~fn~dt~~~~g~--------------------------------------------------------------  128 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGH--------------------------------------------------------------  128 (350)
T ss_pred             ceEEEEecccccccccCc--------------------------------------------------------------
Confidence            999998776544322100                                                              


Q ss_pred             eecCCCCCCCCeEEEEEccC----CCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270          416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~----g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                      .+ ...-|.+.|+.++|-.+    |..+++++ .|-.|++-|...|+....+.        +|.+.|.++- +-++-+++
T Consensus       129 dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~  198 (350)
T KOG0641|consen  129 DL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA  198 (350)
T ss_pred             ce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence            00 00124577888888543    44555544 35688888999999888875        9999998874 44678999


Q ss_pred             EEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270          491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~  562 (764)
                      +|+.|.+|++||++-..++.++...        +.+.+++..|.|++|++|-.|....+||++.++.++.+..|...|.+
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~  278 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC  278 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence            9999999999999988888777532        67899999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEEcCcc---c-eEEEE-eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWDVILA---R-QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd~~~~---~-~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +.|||...||++++.|..|++-|++..   + .+... .+...+..+.|+|..--+++.+.|. ++.+|...
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~  349 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN  349 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence            999999999999999999999998732   1 12222 2334588899999998889999998 79999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.4e-27  Score=205.80  Aligned_cols=255  Identities=18%  Similarity=0.255  Sum_probs=212.5

Q ss_pred             CCeEEEEecCC--CeEEEecCCCCcceEEEEEeCC---eEEEEECCe-EEEEecC---ceEEEecccccceEEEEE---e
Q 004270           35 GKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD---YTFAAYGNH-IAVVKRA---HQVATWSRHSAKVNLLLL---F  102 (764)
Q Consensus        35 ~~~i~iwd~~~--~~~~~~~~~~~~~I~~~~~~~~---~~~~a~g~~-i~vw~~~---~~~~~~~~h~~~v~~l~~---~  102 (764)
                      .|.+.|.++..  +-.....-.-...+..++++++   .+++|+|+. +++||..   ++++.++.|+..|.++.+   .
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~  116 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR  116 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence            57889999863  3333333445778899999876   555666654 9999964   457779999999999997   4


Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS  182 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  182 (764)
                      +..++++|-|++|++|+......    +.++..|...+...+|+|... +.+++++.|+++++||++..-....+..|..
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~  191 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNS  191 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence            77888889999999999988877    888999999999999999876 8999999999999999986544444999999


Q ss_pred             CeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-ee
Q 004270          183 SISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RL  259 (764)
Q Consensus       183 ~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~  259 (764)
                      .|.|+.|+. +...|++|+.|+.|+.||++.-+ ++..+ .+|.-.|+.++|||....+|++++.|-+++|||...+ ..
T Consensus       192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             eeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            999999998 45688999999999999999765 45555 4458899999999998889999999999999999855 44


Q ss_pred             eeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEE
Q 004270          260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWI  296 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~  296 (764)
                      +.+.. .|+.-|..+.|++ ++.++++++.|..+.||+
T Consensus       271 ~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  271 IETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhhhh-ccceEEeccccccccCceeeecccccceeeec
Confidence            44554 7999999999988 456999999999999996

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=233.57  Aligned_cols=233  Identities=12%  Similarity=0.180  Sum_probs=186.1

Q ss_pred             EecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcc---cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        88 ~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      .+.||.+.|.++.|   ++++|++++.||+|++||+.+...   ...++..+..|...+..+.|+|++. +.|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence            37899999999997   568999999999999999987542   1234667778888889999999863 6899999999


Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      +|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999988887664445567889998873444


Q ss_pred             EE---eCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEec-cCCCC
Q 004270          242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFR-SGHSA  315 (764)
Q Consensus       242 sg---~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~-~~h~~  315 (764)
                      +|   +.|+.|++||+++.. ........+...+....|++++++|++++ .|+.|++|++....    ++... ..+..
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~  304 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE  304 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence            44   247899999998764 33333322334566678899999999887 59999999997652    22222 23556


Q ss_pred             CCeeEEEecC
Q 004270          316 PPLCIRFYAN  325 (764)
Q Consensus       316 ~v~~i~~~~~  325 (764)
                      ++..++|.|.
T Consensus       305 ~~~g~~~~pk  314 (493)
T PTZ00421        305 PHKGLCMMPK  314 (493)
T ss_pred             CCcceEeccc
Confidence            7888888884

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.2e-26  Score=227.12  Aligned_cols=283  Identities=19%  Similarity=0.309  Sum_probs=233.1

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCCCCEEE-EEEeeCCCCEEEEEeCCCc
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTA-LAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~-l~fs~d~~~~l~sg~~dg~  248 (764)
                      -++-+.+.+|...|..++..+.. .+++++.||++++|+-..++.+.. ....+.+.|.. ++|.+..+..+++|+.|++
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            46678899999999999887764 789999999999999876665542 22333566665 7777633336999999999


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      |.+|.+.+..+...+. +|.+.|.+++...++. +++||.|.++++|...      .+...+.+|...|.++...|++ .
T Consensus        83 i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~  153 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-T  153 (745)
T ss_pred             EEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-c
Confidence            9999999999999999 9999999999887776 9999999999999654      3455578999999999999987 8


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      ++||+.|.+|++|.-.                                                                
T Consensus       154 ~vTgsaDKtIklWk~~----------------------------------------------------------------  169 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKGG----------------------------------------------------------------  169 (745)
T ss_pred             EEeccCcceeeeccCC----------------------------------------------------------------
Confidence            9999999999999731                                                                


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (764)
                                                                      ....++        .+|.+.|+++++-+++ .
T Consensus       170 ------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~-~  192 (745)
T KOG0301|consen  170 ------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDS-H  192 (745)
T ss_pred             ------------------------------------------------chhhhh--------ccchhheeeeEEecCC-C
Confidence                                                            112222        3899999999999875 4


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      +++++.||.|+.|++ +++.+.++. +..-+.++....+++.++++++|+++++|+..  ++++.+.-....|.++.+-+
T Consensus       193 flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~  269 (745)
T KOG0301|consen  193 FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL  269 (745)
T ss_pred             eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence            889999999999999 555555554 44889999988999999999999999999876  77888876666899999999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCc
Q 004270          568 DGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +|. +++|+.||.||||....
T Consensus       270 NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  270 NGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCC-EEEeccCceEEEEEecc
Confidence            987 66788899999998763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=208.29  Aligned_cols=280  Identities=19%  Similarity=0.326  Sum_probs=209.8

Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (764)
                      ..|+.|++.|. +||+|..||.|.|||+.+...-..+. +|..+|++++|+++|+.|+++|.|..+++||+..+.    +
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~   99 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----P   99 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----c
Confidence            78999999999 99999999999999999999877777 999999999999999999999999999999998774    3


Q ss_pred             eEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270          307 LRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (764)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (764)
                      +... ....+|..+.|+|.. +..+..-.+..-.+.++..+                                       
T Consensus       100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---------------------------------------  139 (405)
T KOG1273|consen  100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---------------------------------------  139 (405)
T ss_pred             eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------------------------------------
Confidence            3332 467899999999943 33332222222222222110                                       


Q ss_pred             cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCc
Q 004270          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  465 (764)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~  465 (764)
                                                              .-+.+..+++|..                           
T Consensus       140 ----------------------------------------~h~~Lp~d~d~dl---------------------------  152 (405)
T KOG1273|consen  140 ----------------------------------------KHSVLPKDDDGDL---------------------------  152 (405)
T ss_pred             ----------------------------------------ceeeccCCCcccc---------------------------
Confidence                                                    0001111111110                           


Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                              +....+..|++.|+++++|...|.+.++|..+.+++..++..  ..|..+.++..|+.+++.+.|..||.|+
T Consensus       153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence                    011112268889999999999999999999999998888765  6889999999999999999999999999


Q ss_pred             ccCCe---------EEEEeec--CCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeCCc--eEEEEEcCC
Q 004270          544 VVALR---------MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN  609 (764)
Q Consensus       544 ~~~~~---------~~~~~~~--h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp~  609 (764)
                      ++.--         +..+++.  ....-.+++||.||.|++.++ .-..++||.-..|.+++.+.+...  ...+.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            86321         1111111  122345789999999998776 456899999999999999988763  889999999


Q ss_pred             CCeEEEEEeCCCeEEEEecc
Q 004270          610 MDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       610 g~~lat~~~d~~~i~lW~~~  629 (764)
                      ...+++-. .| .|++|...
T Consensus       305 rp~i~si~-sg-~v~iw~~~  322 (405)
T KOG1273|consen  305 RPIIASIA-SG-VVYIWAVV  322 (405)
T ss_pred             eeeeeecc-CC-ceEEEEee
Confidence            98888883 33 59999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.2e-25  Score=229.30  Aligned_cols=277  Identities=14%  Similarity=0.321  Sum_probs=228.8

Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .+|...-+.++|.|+|.+|++++.||.|++|+.......++.+.   .+...|.+++..  +.+|++++.++++.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            47999999999999999999999999999998765533444332   267777777764  5599999999999999886


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      .+.....+.                                                                    ...
T Consensus        85 s~~~~~iL~--------------------------------------------------------------------Rft   96 (933)
T KOG1274|consen   85 SGEEDTILA--------------------------------------------------------------------RFT   96 (933)
T ss_pred             CCCccceee--------------------------------------------------------------------eee
Confidence            654322111                                                                    112


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      .+++.++++.+|++++.|+.|-.|++.++........+.        +|.++|.++.++|.+.+||+.+-||.|++|++.
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            678999999999999999999999999999988888875        999999999999999999999999999999999


Q ss_pred             CCCeeeeEec---------CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec--CCCCeeEEEEcCCCcEEE
Q 004270          505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~--h~~~i~~l~~s~dg~~l~  573 (764)
                      ++.+..++..         ...+..++|+|+|..+++.+.|+.|.+|+..+++....+..  |...+.+++|||+|+|||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            9987776643         24567899999999999999999999999999998888764  445599999999999999


Q ss_pred             EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW  626 (764)
                      +++.||.|.|||+++-   ..-.....|++++|.|+++-+-.....+. ..+|
T Consensus       249 As~~~g~I~vWnv~t~---~~~~~~~~Vc~~aw~p~~n~it~~~~~g~-~~~~  297 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDTH---ERHEFKRAVCCEAWKPNANAITLITALGT-LGVS  297 (933)
T ss_pred             eeccCCcEEEEecccc---hhccccceeEEEecCCCCCeeEEEeeccc-cccC
Confidence            9999999999999982   22223345999999999988766666552 4444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.3e-26  Score=221.62  Aligned_cols=282  Identities=16%  Similarity=0.245  Sum_probs=238.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC---ceEEEEecc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      .|..-|.++++|...+.+.+|+. |.|+|||+...   ..+..+..- ....|+++...|||+ .|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence            47888899999999999999986 88999999743   233333322 246799999999999 7888999999999999


Q ss_pred             CCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          255 EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       255 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      ....+..... ....-...+++.+||.+..+++..||.|.|||+...    .+++.+.||...+.||.+++||..|-+|+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCC
Confidence            8764433222 123346788999999999999999999999999877    68899999999999999999999999999


Q ss_pred             CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (764)
Q Consensus       334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (764)
                      -|.++|.||++++.+..+..                                                            
T Consensus       571 lDntvRcWDlregrqlqqhd------------------------------------------------------------  590 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHD------------------------------------------------------------  590 (705)
T ss_pred             Cccceeehhhhhhhhhhhhh------------------------------------------------------------
Confidence            99999999998876554321                                                            


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (764)
                               ..+.|.++..+|.+.++++|..++.+.+...........         .-|...|.++.|.+.|+++++.+
T Consensus       591 ---------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  591 ---------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             ---------hhhhheecccCCCccceeeecccCcEEEEecCCccceee---------cccccEEEEEEecccCceeeecC
Confidence                     127788899999999999999999999988765544332         37999999999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       494 ~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                      .|..+..|...-|..+...+..+.|.++.+|.|++++++|+.|....||.+
T Consensus       653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999998888888899999999999999999999998888864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=202.47  Aligned_cols=209  Identities=14%  Similarity=0.231  Sum_probs=162.2

Q ss_pred             EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270           87 ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~  164 (764)
                      ..|+||.+.|++++|  ||++|++++.|++|++|++.+.+...-.........+....++|+||-. ..++..-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEEE
Confidence            348999999999998  7999999999999999999876542111112222334556788999984 3444445566799


Q ss_pred             EEeCCC---CeEEE---------EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270          165 LWNIST---KKKLY---------EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (764)
Q Consensus       165 iwd~~~---~~~~~---------~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f  232 (764)
                      +|-...   |...+         --+.|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceee
Confidence            996532   22111         123467778888888889999999999999999999 9999888765 566788999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECC---Cc-----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          233 SSDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       233 s~d~~~~l~sg~~dg~i~iwd~~---~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      ||+|+ ++++++..-.|++|.+-   .|     ..+..+. +|.+.|..++|+++...+++.+.||++++||.+..
T Consensus       237 SP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  237 SPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             CCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            99999 88888888899999863   22     2344566 99999999999999999999999999999988754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.9e-24  Score=219.42  Aligned_cols=284  Identities=13%  Similarity=0.154  Sum_probs=217.8

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ++++++.|+.|.+||+.+++.+..+. .+ ..+.+++|+|++..+ ++++.++.|++|+....    +....+..+. .+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~   75 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP-DP   75 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC-Cc
Confidence            78899999999999999998888876 44 346789999999876 56778899999988754    3333333333 35


Q ss_pred             eeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      ..++|+|+++.++++ +.++.+++||+.+.+....+.                                           
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------------------  112 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------------------  112 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence            678999999877655 568999999986543222110                                           


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECcCCcccceecCccccccccccC
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                                                ....+.+++++|+|++++++..++ .+..|+..++.......         ...
T Consensus       113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~  157 (300)
T TIGR03866       113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ  157 (300)
T ss_pred             --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence                                      013356799999999999988875 56778988776654432         223


Q ss_pred             cEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEE-eCCCeEEEEEcc
Q 004270          476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV  545 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~  545 (764)
                      ...+++|++++++++.+ ..++.|++||+.+++.+..+...        .....++|+|++++++++ ..++.+.+||++
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            45779999999988654 46899999999999877766532        123568899999986554 456789999999


Q ss_pred             CCeEEEEeecCCCCeeEEEEcCCCcEEEEE-eCCCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       546 ~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                      +++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++.+..++.....++++++|
T Consensus       238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            998876654 44578999999999999876 468999999999999999999888889999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.8e-25  Score=199.81  Aligned_cols=276  Identities=16%  Similarity=0.237  Sum_probs=216.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~  260 (764)
                      ...|+.+.|+|.++.|++++.||.+++|++........+.+  ..++.+++|.++..  +++|+.||.|+.+|+.++...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcce
Confidence            67899999999999999999999999999998877766665  68999999998764  889999999999999988766


Q ss_pred             eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                      ..-  .|..+|.++.+++....+++||.|++|++||.....    ..... .....|.++..  .|+.|+.|+.|..+.+
T Consensus        89 ~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   89 QIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLI  159 (323)
T ss_pred             eec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEEE
Confidence            554  599999999999988899999999999999876531    22222 22336777665  4678999999999999


Q ss_pred             EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (764)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (764)
                      ||+++........                                                                  .
T Consensus       160 yDLRn~~~~~q~r------------------------------------------------------------------e  173 (323)
T KOG1036|consen  160 YDLRNLDEPFQRR------------------------------------------------------------------E  173 (323)
T ss_pred             EEcccccchhhhc------------------------------------------------------------------c
Confidence            9998754433111                                                                  0


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC----cccceecCcccc-ccccccCcEEEEEECCCCCEEEEEeCC
Q 004270          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYH  495 (764)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (764)
                      ...+..++++++-|++.-.++++-+|.|.+=.+...    .....|.-.... ....-..+|.+|+|+|-...|+||+.|
T Consensus       174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD  253 (323)
T KOG1036|consen  174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD  253 (323)
T ss_pred             ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence            122367899999999999999999999887655544    222222100000 001123479999999999999999999


Q ss_pred             CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC
Q 004270          496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~  535 (764)
                      |.|.+||+.+.+.+..+... ..|.+++|+.+|..||+++.
T Consensus       254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999888887665 77999999999999999975

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.6e-24  Score=226.79  Aligned_cols=228  Identities=15%  Similarity=0.164  Sum_probs=180.7

Q ss_pred             EecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEEcCC
Q 004270          109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKGW  180 (764)
Q Consensus       109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~h  180 (764)
                      |+.++.|++|+......    +..+..|...+..+.|+|... +.|++|+.||+|++||+.++.        .+..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            55678899999876543    677888889999999999732 689999999999999997642        34568899


Q ss_pred             CCCeEEEEEcCCCCE-EEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270          181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~  259 (764)
                      ...|.+++|+|++.. |++++.|+.|+|||+++++.+..+..  ...|.+++|+|+|. +|++++.|+.|+|||+++++.
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE
Confidence            999999999999875 57899999999999999988777753  47899999999999 899999999999999999999


Q ss_pred             eeeeecccccCeeEE-----EEecCCCEEEEEcCCC----cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270          260 QSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l-----~~~~~~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (764)
                      +..+. +|.+.+...     .|++++.++++++.|+    +|++||++.... +........+.+.+......++|.+++
T Consensus       202 i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        202 ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEE
Confidence            88887 888765433     3458888999988774    799999875432 122222333334333333444688999


Q ss_pred             EEeCCCcEEEEEeecc
Q 004270          331 SAGQDRAFRLFSVIQD  346 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~  346 (764)
                      +|+.|+.|++|++..+
T Consensus       280 sGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        280 IGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEECCCeEEEEEccCC
Confidence            9999999999998654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=8.8e-25  Score=214.82  Aligned_cols=169  Identities=16%  Similarity=0.244  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEE-----EEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      +.+..+.+|...|+.+.|+|- ..+||+++.|..|+||.+..|-...     ....+.+-.|.++.|+|....+|+++. 
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-  148 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-  148 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-
Confidence            345567899999999999994 4588999999999999998443211     112333568899999998776777765 


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEec
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYA  324 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~  324 (764)
                      .|.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|..|+|||-+...   +.+....+|.+. =..+.|..
T Consensus       149 ~g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~G  224 (1012)
T KOG1445|consen  149 HGSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAG  224 (1012)
T ss_pred             CceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeecc
Confidence            7899999999999999998 999999999999999999999999999999876543   455555777653 23566766


Q ss_pred             CCCEEEEEeCC----CcEEEEEeec
Q 004270          325 NGRHILSAGQD----RAFRLFSVIQ  345 (764)
Q Consensus       325 ~~~~l~s~~~d----g~i~i~d~~~  345 (764)
                      +-..|++.+.+    +.+++||.+.
T Consensus       225 n~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  225 NWERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             chhhhhhcccchhhheeeeeeeccc
Confidence            65577776654    5678888754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=4.5e-24  Score=216.73  Aligned_cols=294  Identities=11%  Similarity=0.122  Sum_probs=220.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +.+++++.|+.+.+||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+  ..+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence            4678899999999999999999999987544 6789999999876 56677899999999999887776543  335788


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-cEEEEEecCCCCCceeeEe
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~  309 (764)
                      +|+|+++.++++++.++.|++||+.+++.+..+.  +...+.+++|+|++.++++++.++ .+.+|+....    .....
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~  152 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN  152 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence            9999998444555678999999999988777765  334578899999999999888765 4666776543    22222


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                      . .....+.+++|+|++++++.+ ..++.+++||+.+++....+...                                 
T Consensus       153 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---------------------------------  198 (300)
T TIGR03866       153 V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---------------------------------  198 (300)
T ss_pred             E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence            2 123456789999999988655 46899999999766443322100                                 


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCcccceecCccc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE  467 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~  467 (764)
                                          .        ............++++|+|++++++ ..++.+.+||+.+++.....     
T Consensus       199 --------------------~--------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----  245 (300)
T TIGR03866       199 --------------------I--------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-----  245 (300)
T ss_pred             --------------------c--------cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence                                0        0000001234468899999987664 45678999999888766543     


Q ss_pred             cccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEEee
Q 004270          468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (764)
Q Consensus       468 ~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (764)
                          .+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+.....++++|
T Consensus       246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence                234578899999999999876 468999999999999999998887778888764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=6.3e-25  Score=214.86  Aligned_cols=319  Identities=14%  Similarity=0.227  Sum_probs=244.2

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      +-..+++|.+.|.++...|.|.+||+|+.||+|+||.+.+|.++.++...  +.|.|++|+|.+..-+++......+.|-
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEe
Confidence            34567899999999999999999999999999999999999999999874  7899999999876444444444557777


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEE----cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      +..-|..+..-.              ....|+++    ..+..+..|.-...+....-+...-.|...|..+.|+..|.|
T Consensus       470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY  535 (733)
T KOG0650|consen  470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY  535 (733)
T ss_pred             Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence            654442211110              01112221    235577888654332222224455579999999999999999


Q ss_pred             EEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       329 l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      |++...+   ..+.|+++......                                                        
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ--------------------------------------------------------  559 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQ--------------------------------------------------------  559 (733)
T ss_pred             EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence            9987654   45666665433211                                                        


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                  .+.....+.+.++.|+|...++++++.. .|++||+..+..+..+.        .....|..++++|.
T Consensus       560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~  618 (733)
T KOG0650|consen  560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN  618 (733)
T ss_pred             ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence                        1122334789999999999999998764 79999999888777765        56678999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCC-CCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEcc------CC---eEEEEee
Q 004270          486 NTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------AL---RMVRKFE  554 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~------~~---~~~~~~~  554 (764)
                      |..|+.++.|+.+..+|+.- .++.+++.++ ..+++++|++.-.++++|++||++.||.-.      ..   -++..++
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            99999999999999999984 4566666666 889999999999999999999999998532      11   3467888


Q ss_pred             cCCCC----eeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270          555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       555 ~h~~~----i~~l~~s~dg~~l~s~s~dg~i~iw  584 (764)
                      ||...    |.+..|+|...||++++.||+|++|
T Consensus       699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99766    8999999999999999999999998

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.6e-23  Score=211.50  Aligned_cols=494  Identities=17%  Similarity=0.220  Sum_probs=315.7

Q ss_pred             EEeCCeE--EEEECCeEEEEec--CceEEEecccccceEEEEEe-----CCEEEEEecCCcEEEEEccCCcccccceeeE
Q 004270           63 ASYRDYT--FAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV  133 (764)
Q Consensus        63 ~~~~~~~--~~a~g~~i~vw~~--~~~~~~~~~h~~~v~~l~~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~  133 (764)
                      .||+|.+  |+.+++.|.||..  +..+..+.+|..+++.+.++     -.++++++.||.|++||...+++    ++++
T Consensus        23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~   98 (792)
T KOG1963|consen   23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF   98 (792)
T ss_pred             ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence            4788844  4567889999985  45566699999999999863     26888999999999999999988    4444


Q ss_pred             ecCCccccEEEEeCCCCC-CEEE-EEeCCC------------cEEEEeCCC--CeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 004270          134 KLDDKFTPTCIMHPDTYL-NKVI-VGSQEG------------SLQLWNIST--KKKLYEFKGWGSSISSCVSSPALDVVA  197 (764)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~-~~l~-~~~~dg------------~i~iwd~~~--~~~~~~~~~h~~~i~~~~~sp~~~~la  197 (764)
                      ..+.... ...+.|.-.. ...+ .+..+.            +.+-+.+.+  ......++.|.. -.++.+++.|.+.+
T Consensus        99 ~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~  176 (792)
T KOG1963|consen   99 DNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG  176 (792)
T ss_pred             ecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence            4322211 1111111000 0111 111111            111111111  011111222222 46788888887776


Q ss_pred             EEEcCCeEEEEEccCCceE---EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCe
Q 004270          198 VGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAI  271 (764)
Q Consensus       198 ~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~h~~~v  271 (764)
                      .... ..+.+|+..++...   +....+|...+++.+++|.++ ++|+|..||.|.+|.--.   .+...++..-|...|
T Consensus       177 i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  177 IVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            6654 56889998875511   112234466789999999999 999999999999996322   233333333688899


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~  351 (764)
                      .+++|+++|.+|++||.++.+.+|.+.++.  .+.+   ..-.++|..+.++||+.+.+....|+.|.+....+......
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            999999999999999999999999887764  2333   34578999999999999999999999999988765544433


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                      ++......                                                         -.......+-.+.++
T Consensus       330 Isgi~~~~---------------------------------------------------------~~~k~~~~~l~t~~~  352 (792)
T KOG1963|consen  330 ISGIKPPT---------------------------------------------------------PSTKTRPQSLTTGVS  352 (792)
T ss_pred             ccCccCCC---------------------------------------------------------ccccccccccceeEE
Confidence            32211000                                                         000111235677889


Q ss_pred             EccCCCEEEEEecCCcEEEEECcCCcccceecCccccc--cc-cccCcEEEEEECCCCCEEEEEe--------CC--CeE
Q 004270          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS--NY-AHNGEVVGVACDSTNTLMISAG--------YH--GDI  498 (764)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~l~~~~~~~~l~s~~--------~d--g~v  498 (764)
                      ++|.-+.++..+..|+|++||+.+...+..+.......  .. .+.-.++.++.+-.|.+++|.-        .|  -.+
T Consensus       353 idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L  432 (792)
T KOG1963|consen  353 IDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL  432 (792)
T ss_pred             EcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence            99988889999999999999999887775553211110  01 3344678888888899998874        22  358


Q ss_pred             EEEECCCCCee----eeEe--cCcceEEEEE-eecCC-EEEEEeCCCeEEEEEccCC----------eEEEEeecCCCCe
Q 004270          499 KVWDFKGRDLK----SRWE--VGCSLVKIVY-HRVNG-LLATVADDLVIRLFDVVAL----------RMVRKFEGHTDRI  560 (764)
Q Consensus       499 ~iwd~~~~~~~----~~~~--~~~~i~~~~~-s~~~~-~la~~~~d~~i~v~d~~~~----------~~~~~~~~h~~~i  560 (764)
                      ++|-......-    ..+.  ++..+...++ ++... ..++++.||.++||-+...          .+...-.-|..++
T Consensus       433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i  512 (792)
T KOG1963|consen  433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI  512 (792)
T ss_pred             EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence            89987655432    2222  2233333333 33333 8999999999999988432          2222222378899


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEEEEcCc-cceEEEEeeCC-ceEEEEEcC----CCCeEEEEEeCCCeEEEEeccc
Q 004270          561 TDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       561 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~-~v~~l~~sp----~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      ++++||.||..|+ ++.|++|.+||..+ ..+........ ++..+.+..    ++. +..++ .. .+.+|++..
T Consensus       513 ~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~  584 (792)
T KOG1963|consen  513 TALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS  584 (792)
T ss_pred             cchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence            9999999997555 66789999999988 44333332211 233333332    222 22222 23 588888743

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.4e-24  Score=192.60  Aligned_cols=298  Identities=16%  Similarity=0.270  Sum_probs=231.1

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc----------eEE----EEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELV----TFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       178 ~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~----------~~~----~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++...          .+.    .-...|+-.|.++.|-|-..-++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            56889999999987 58999999999999999998533          111    1112346689999999976668999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (764)
                      ++.|.++++||.++.+....+.  -++.|.+-+++|=.   -++++|..|-.|++.|+..+    .....+.||...|.+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA  193 (397)
T ss_pred             ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence            9999999999999988888776  67788888888843   37788888899999999877    577888999999999


Q ss_pred             EEEecCCCE-EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       320 i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +.|+|...+ |++|+.||.+++||++..                                                    
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRra----------------------------------------------------  221 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRA----------------------------------------------------  221 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecc----------------------------------------------------
Confidence            999996654 678999999999998642                                                    


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                                                    .|...+.|...++....+.     ...+|.+.|.
T Consensus       222 ----------------------------------------------sgcf~~lD~hn~k~~p~~~-----~n~ah~gkvn  250 (397)
T KOG4283|consen  222 ----------------------------------------------SGCFRVLDQHNTKRPPILK-----TNTAHYGKVN  250 (397)
T ss_pred             ----------------------------------------------cceeEEeecccCccCcccc-----ccccccceee
Confidence                                                          1122222322222111111     1148999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~  550 (764)
                      +++|..++.++++++.|..+++|+..+|+....--        .+-.+. +. +-+...++.--.++.+.++++-.+..+
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~i  328 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFV  328 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEE
Confidence            99999999999999999999999998775322111        111111 22 334555555556799999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +.+.+|-..|.+.++-|+-+...+++.|+.|..|-.
T Consensus       329 r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  329 RRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            999999999999999999999999999999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.8e-25  Score=191.51  Aligned_cols=237  Identities=19%  Similarity=0.261  Sum_probs=191.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCce--EEEEecc
Q 004270          150 YLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHS  222 (764)
Q Consensus       150 ~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~  222 (764)
                      |..+|++++.|++|+|+.+++.   +++.++.||.++|..++|..  -|.+||+++.||.|.||.-.+++-  ..... .
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~-~  100 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA-A  100 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh-h
Confidence            3478999999999999998754   57889999999999999986  799999999999999999887752  23333 3


Q ss_pred             CCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecC---C-----------CEEEE
Q 004270          223 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMS  285 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~---~-----------~~l~s  285 (764)
                      |...|++++|.|.+- .+|++++.||.|.|.+.++.  -....+..+|.-.|++++|.|.   |           +.|++
T Consensus       101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS  180 (299)
T KOG1332|consen  101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS  180 (299)
T ss_pred             hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence            488999999999752 37889999999999987654  3344455589999999999986   4           46999


Q ss_pred             EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC----CCEEEEEeCCCcEEEEEeecccccccccchhhhHHH
Q 004270          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (764)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  361 (764)
                      |+.|+.|+||+++..  ....-+.+.+|.+.|+.++|.|.    ..+|++++.||++.||.........+          
T Consensus       181 gGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk----------  248 (299)
T KOG1332|consen  181 GGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK----------  248 (299)
T ss_pred             cCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc----------
Confidence            999999999998865  44556668999999999999994    35799999999999998653211111          


Q ss_pred             hhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (764)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (764)
                                                                             .......+..+..+.||..|+.|++
T Consensus       249 -------------------------------------------------------~tll~~f~~~~w~vSWS~sGn~LaV  273 (299)
T KOG1332|consen  249 -------------------------------------------------------KTLLEEFPDVVWRVSWSLSGNILAV  273 (299)
T ss_pred             -------------------------------------------------------ccccccCCcceEEEEEeccccEEEE
Confidence                                                                   0111123478999999999999999


Q ss_pred             EecCCcEEEEECc
Q 004270          442 GTAGGWIERFNLQ  454 (764)
Q Consensus       442 g~~~g~i~i~~~~  454 (764)
                      ++.|+.|.+|.-.
T Consensus       274 s~GdNkvtlwke~  286 (299)
T KOG1332|consen  274 SGGDNKVTLWKEN  286 (299)
T ss_pred             ecCCcEEEEEEeC
Confidence            9999999999754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.9e-25  Score=192.53  Aligned_cols=254  Identities=16%  Similarity=0.271  Sum_probs=207.3

Q ss_pred             ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      ...|++.|..+..  .|++|++|+.|++|+|+.+.+... ..++.++..|.+.+..+++....|.+.|++++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            5678888888764  699999999999999999987654 2237788999999999998776667999999999999999


Q ss_pred             eCCCCe--EEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCC--ceEEEEeccCCCCEEEEEEeeC---CC
Q 004270          167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ  237 (764)
Q Consensus       167 d~~~~~--~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d---~~  237 (764)
                      .-.+|+  ..+.+..|...|++++|.|.  |-.||+++.||.|.|.+.++.  -....+...|.-.|++++|.|.   |.
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            987773  45667899999999999996  568999999999999998865  2334444455778999999986   31


Q ss_pred             ----------CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecCC----CEEEEEcCCCcEEEEEecCCC
Q 004270          238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       238 ----------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~d~~i~vw~~~~~~  301 (764)
                                ..|++|+.|..|+||+..++  +...++. +|.+-|+.++|.|.-    .++++++.||++.||..+.. 
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-  243 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-  243 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-
Confidence                      25999999999999999876  3334455 999999999999964    38999999999999987733 


Q ss_pred             CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ..+-....+......+..+.|+..|+.|+.++.|+.+.+|.-..
T Consensus       244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            22233344445678899999999999999999999999997543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-24  Score=201.85  Aligned_cols=290  Identities=17%  Similarity=0.281  Sum_probs=234.2

Q ss_pred             cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (764)
Q Consensus        92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~  169 (764)
                      -.++|+++.|  ....|++++.||++++|.++...-.  .+..+.+..-.+.++.|+|+|. ..+++++....++.||+.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeecc
Confidence            3567899887  5788999999999999999876542  3677777788888999999993 389999999999999999


Q ss_pred             CCeEEE--EEcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          170 TKKKLY--EFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       170 ~~~~~~--~~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      +.+...  ...++ ...+.....||++++||..+..|.|.+....+++.+.+++.  .+.|..++|+.||+ .|++.+.+
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk-~l~~~~~~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSK-ELLASGGT  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCc-EEEEEcCC
Confidence            886543  33344 34677889999999999999999999999999999999988  58999999999998 66666678


Q ss_pred             CcEEEEECCCceeeeeeecccccCe--eEEEEecCCCEEEEEcCCCcEEEEEecCC--CCCceeeEeccCCCCCCeeEEE
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      |.|.+||++...+++.+.  -.+.|  ++++.++++.+|++|+..|.|.|||.+..  ...++++..+..-...|+++.|
T Consensus       366 GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F  443 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF  443 (514)
T ss_pred             ceEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence            999999999998888887  34444  46667789999999999999999986543  3456777777778889999999


Q ss_pred             ecCCCEEEEEeC--CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          323 YANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       323 ~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      ++|++.|+.++.  +..+|+-.+.+...-..+                                                
T Consensus       444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNf------------------------------------------------  475 (514)
T KOG2055|consen  444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNF------------------------------------------------  475 (514)
T ss_pred             CcchhhhhhhhhccccceEEEeccceeeeccC------------------------------------------------
Confidence            999999887764  567777765433221111                                                


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                       ......-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus       476 -----------------P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  476 -----------------PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             -----------------CCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                             1111233789999999999999999999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=3e-24  Score=204.38  Aligned_cols=254  Identities=18%  Similarity=0.345  Sum_probs=203.9

Q ss_pred             ecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccc------cceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270           89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        89 ~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                      .-.|.+.|+.+..   +...+++.+..+.|.|||.....-..      .|-..+.+|.+....+.+++... ..+++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence            4457788887763   45677778888999999997654322      22336667776556677777654 58999999


Q ss_pred             CCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccC--CceEEEEeccCCCCEEE
Q 004270          160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA  229 (764)
Q Consensus       160 dg~i~iwd~~~~~-------~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~  229 (764)
                      |++|++||+....       ....+.+|...|..++|++- .+++++++.|+.+.|||+++  .+...... .|.++|.|
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeE
Confidence            9999999997432       35668999999999999995 46888999999999999995  33344443 45899999


Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCC-------
Q 004270          230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT-------  300 (764)
Q Consensus       230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~-------  300 (764)
                      ++|+|-+.++||+|+.|++|++||+++. +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-       
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999999989999999999999999986 4566666 999999999999965 58999999999999998653       


Q ss_pred             ---CCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeec
Q 004270          301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       301 ---~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~  345 (764)
                         ++.+.++....||...|..+.|+|.. -.+++.+.|+.+.||....
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence               34456777888999999999999954 5677889999999999763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.4e-24  Score=190.72  Aligned_cols=282  Identities=15%  Similarity=0.267  Sum_probs=216.8

Q ss_pred             eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (764)
Q Consensus       184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~  263 (764)
                      -.|+.|++-|.+||+|+.||.|.|||+.|...-+.+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence            689999999999999999999999999998876666655 88999999999999 9999999999999999999999999


Q ss_pred             ecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       264 ~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +  ..++|+.+.|+|.....+.++ .+..-                         .-+.|++.-..++.-..|+.+.   
T Consensus       104 r--f~spv~~~q~hp~k~n~~va~~~~~sp-------------------------~vi~~s~~~h~~Lp~d~d~dln---  153 (405)
T KOG1273|consen  104 R--FDSPVWGAQWHPRKRNKCVATIMEESP-------------------------VVIDFSDPKHSVLPKDDDGDLN---  153 (405)
T ss_pred             E--ccCccceeeeccccCCeEEEEEecCCc-------------------------EEEEecCCceeeccCCCccccc---
Confidence            8  788999999999654333222 11111                         1223332111222223333211   


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (405)
T KOG1273|consen  154 --------------------------------------------------------------------------------  153 (405)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                        ....+..|.+.|+++++|+..|.+.+++..+.+.+..+.       ......|..+.++..|+.++.-+.|..||.|+
T Consensus       154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r-------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR-------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --cccccccccCCCCEEEEecCcceEEEEecchheeeeeee-------echheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence              112223577789999999999999999999998888775       12347899999999999999999999999999


Q ss_pred             CCCC-------CeeeeEec-----CcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEeecCC-CCeeEEEEcCC
Q 004270          503 FKGR-------DLKSRWEV-----GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED  568 (764)
Q Consensus       503 ~~~~-------~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~s~d  568 (764)
                      ++.-       ++....+.     ...=.+++|+.+|.|+++++. -..++||.-..|.+++.+.|.. ....++.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            7621       11111111     133457899999999988764 4689999999999999999988 56788999999


Q ss_pred             CcEEEEEeCCCcEEEEEcC
Q 004270          569 GKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~  587 (764)
                      ...+++- ..|.|+||...
T Consensus       305 rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  305 RPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             eeeeeec-cCCceEEEEee
Confidence            8888877 67899999854

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-21  Score=200.62  Aligned_cols=449  Identities=16%  Similarity=0.230  Sum_probs=313.7

Q ss_pred             EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC
Q 004270          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG  179 (764)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  179 (764)
                      .|+++++.+. ...|.||...++++    +..+..+........+.|.... .++++.+.+|.|++||...++++.++..
T Consensus        26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            3778887776 77899999999999    6778888888888888887753 5788999999999999999999999876


Q ss_pred             CCCCeEEEEEcCC---CCEEE-EEEcCCe-EEEEEccCCceEEEEe------------ccCCCCEEEEEEeeCCCCEEEE
Q 004270          180 WGSSISSCVSSPA---LDVVA-VGCSDGK-IHVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       180 h~~~i~~~~~sp~---~~~la-~g~~dg~-i~iwd~~~~~~~~~~~------------~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                       ..++..+.+.|.   ....+ .+..|.. +.....+..+....+.            ..+. .-.++.+++.|. +.+.
T Consensus       101 -~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i  177 (792)
T KOG1963|consen  101 -NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI  177 (792)
T ss_pred             -CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence             344555555331   11222 2222211 1111111112111111            1111 146778888887 4433


Q ss_pred             EeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270          243 GASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (764)
                       ..+..+.+|+..++..   .+.....|.-.+++.+++|++++++++..||.|.+|.=-...........+.-|...|++
T Consensus       178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence             3456789999877541   111123577778999999999999999999999999633312333445666789999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      ++|+++|.+|++||..+.+.+|.+.+++. +-++                                              
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP----------------------------------------------  289 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP----------------------------------------------  289 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence            99999999999999999999999987762 1111                                              


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc---ccccccCc
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE  476 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~  476 (764)
                                            .-.++|..+.+|||+.+.++...|+.|.+....+.............   ......+-
T Consensus       290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence                                  12388999999999999999999999999988766555544322211   11234556


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------------CcceEEEEEeecCCEEEEEeC--------C
Q 004270          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D  536 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d  536 (764)
                      .+.++++|.-+.++-.+..|.|.+||+.+.+.+..+..            .-.+++++.+..|.++++.-.        |
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence            78899999778888999999999999988877665532            145778888888999988642        3


Q ss_pred             --CeEEEEEccCCe----EEEE-eecCCCCeeEEEEcCC-Cc-EEEEEeCCCcEEEEEcCccc----------e--EEEE
Q 004270          537 --LVIRLFDVVALR----MVRK-FEGHTDRITDFCFSED-GK-WLLSSGMDGSLRIWDVILAR----------Q--IDAI  595 (764)
Q Consensus       537 --~~i~v~d~~~~~----~~~~-~~~h~~~i~~l~~s~d-g~-~l~s~s~dg~i~iwd~~~~~----------~--~~~~  595 (764)
                        -.+++|-.....    +... ...|...+...+|.+. .. ..++++.||.++||-+.+.+          +  +..+
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence              357788655432    2222 2358777766666543 23 78999999999999884322          1  1111


Q ss_pred             eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       596 ~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                       +..++++++|+.||..|+.+..|  +|.+|+...
T Consensus       508 -~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~  539 (792)
T KOG1963|consen  508 -HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT  539 (792)
T ss_pred             -ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence             34569999999999887776554  599999765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.9e-23  Score=186.94  Aligned_cols=292  Identities=18%  Similarity=0.254  Sum_probs=214.4

Q ss_pred             ecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCccccc--------c---eeeEecCCccccEEEEeCCCCCCEE
Q 004270           89 WSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLA--------P---VGHVKLDDKFTPTCIMHPDTYLNKV  154 (764)
Q Consensus        89 ~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~p~~~~~~l  154 (764)
                      .+.|.+.|.++..+   |+++++|+.||.|.|||++.......        .   ...-..|.-.+.++.+-|-.. ..+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-cee
Confidence            45799999999974   99999999999999999987552110        0   111123334455566666553 578


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .+++.|.++++||.++.+....|+- .+.|.+-++||-   -.++|+|..+-.|++-|+.+|.....+.+| .+.|.++.
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~  195 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVE  195 (397)
T ss_pred             ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEEE
Confidence            8899999999999999999999886 678888888884   348899999999999999999999999876 88999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCc-eeeee-------------eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKR-RLQSV-------------IREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~-------------~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (764)
                      |+|...++|++|+.||.|++||++.. .+...             ...+|.+.|.+++|..++.++++++.|..+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            99999999999999999999999754 11111             12478899999999999999999999999999988


Q ss_pred             cCCCCCceeeEeccCCCC---CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          298 DTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      ..+....+..... .|..   .-..+. +.+...++---.++.+.++++-.+..                          
T Consensus       276 ~~G~ntl~~~g~~-~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~--------------------------  327 (397)
T KOG4283|consen  276 ESGRNTLREFGPI-IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF--------------------------  327 (397)
T ss_pred             ccCcccccccccc-cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE--------------------------
Confidence            7664432221111 1111   111112 22333343334456666666544332                          


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                 ++.|+.               |...+.+.++.|+=+...+|..|+.+..|..
T Consensus       328 ---------------------------ir~l~~---------------h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  328 ---------------------------VRRLST---------------HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ---------------------------EEeeec---------------ccceeeEEeecCchhhhhccccCCccccccc
Confidence                                       233332               2367888889999899999999999999976

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=3.3e-23  Score=196.75  Aligned_cols=304  Identities=20%  Similarity=0.277  Sum_probs=234.5

Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH  328 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~  328 (764)
                      +|+.+-......+ -+.+.|++++|+|..+  ++++|..-|.|-+||+++......-+..+..|..+|.++.|+| +...
T Consensus       171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence            4444445555566 6889999999999765  7888888999999999765555556677789999999999999 6678


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      +++.+.||++++-|+........++..                                                     
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~-----------------------------------------------------  276 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLD-----------------------------------------------------  276 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcC-----------------------------------------------------
Confidence            999999999999998765432222110                                                     


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-C
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  487 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  487 (764)
                                   ........+.++.+...++.|..=|...+||++++.......       .-|...|++++++|.. .
T Consensus       277 -------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  277 -------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             -------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence                         112456677888888888888888899999998876633322       3788899999999965 6


Q ss_pred             EEEEEeCCCeEEEEECCCCC-----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc----CCeEEEEeecCCC
Q 004270          488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD  558 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~----~~~~~~~~~~h~~  558 (764)
                      +++|++.|++.+|||++.-.     .+..+.+...|.+..|||.+..|++.+.|..|+|||..    ...+...+. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            78999999999999987532     35667777999999999999999999999999999983    334444443 321


Q ss_pred             ------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEE-EEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       559 ------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~-l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                            ......|.||..++++|-.-..|-|+|-..++++..+..+..  |.+ ..|+|-+..+++|+.-++-|+||..+
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence                  133467999999999999988999999998888888755443  444 58999998677776665569999876


Q ss_pred             c
Q 004270          630 C  630 (764)
Q Consensus       630 ~  630 (764)
                      .
T Consensus       496 ~  496 (498)
T KOG4328|consen  496 K  496 (498)
T ss_pred             C
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=201.46  Aligned_cols=275  Identities=13%  Similarity=0.208  Sum_probs=209.2

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (764)
                      .+..++|.|+|  ..++.+.. ..+.+||.+.|.+++++++|.+.|.|++|+.+|+.+|+|+.|..|.+|+.+   ....
T Consensus        14 ci~d~afkPDG--sqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDG--TQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGI   87 (1081)
T ss_pred             chheeEECCCC--ceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccce
Confidence            56778999999  66766644 459999999999999999999999999999999999999999999999854   3334


Q ss_pred             EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      ++-.|...|.|+.|.|-.. .|++++- ...-+|..+.....+.   .....+.+++|..||.+++.|-.+|+|.+-+-.
T Consensus        88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            4455688999999999888 7888774 4577898765543322   235678899999999999999999999987322


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCC-----CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                        ......+....|...+|.+++|+|..     ..+++.....++.++.+...                           
T Consensus       163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------------------------  213 (1081)
T KOG1538|consen  163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------------------------  213 (1081)
T ss_pred             --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence              22223344445788999999999943     24445555555555544321                           


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                           .++     ....-.....|+.+-++|.++++|+.++.+.+|.-
T Consensus       214 -------------------------------------~Ig-----k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  214 -------------------------------------QIG-----KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             -------------------------------------eec-----ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence                                                 111     01112255678899999999999999999999975


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      . |....++.        .....|..++..|++++++.|+.||+|-.|++-
T Consensus       252 ~-GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  252 D-GVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             c-CeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            4 44555543        466789999999999999999999999999863

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=5.3e-24  Score=202.67  Aligned_cols=243  Identities=17%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             CCCCcceEEEEEeCC-eEEEEE---CCeEEEEecCce------------EEEecccccceEEEEE---eCCEEEEEecCC
Q 004270           53 PQLPKKIRALASYRD-YTFAAY---GNHIAVVKRAHQ------------VATWSRHSAKVNLLLL---FGEHILSIDIDG  113 (764)
Q Consensus        53 ~~~~~~I~~~~~~~~-~~~~a~---g~~i~vw~~~~~------------~~~~~~h~~~v~~l~~---~g~~l~s~~~dg  113 (764)
                      ..|++.|..+..-|. -..+|+   ++.|+|||..+.            -.++.||...=.++++   ...+|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            457888888887777 344554   344999985321            1268899998778887   366899999999


Q ss_pred             cEEEEEccCCcc---cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEE
Q 004270          114 NMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCV  188 (764)
Q Consensus       114 ~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~  188 (764)
                      +|++||+.....   ...+...+..|...+..++|||-.. +.+.+++.|+.+.|||.+  +.++.+..++|.+.|.|++
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            999999987655   2445667788899999999999875 678889999999999999  6677888899999999999


Q ss_pred             EcCC-CCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---------
Q 004270          189 SSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---------  257 (764)
Q Consensus       189 ~sp~-~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---------  257 (764)
                      |+|- +..||+|+.|++|.+||+++-. .+.++.. |...|.++.|+|+...+||+++.|+.+.+||+..-         
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            9995 4688999999999999999765 4555554 58999999999999889999999999999998643         


Q ss_pred             -----eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEec
Q 004270          258 -----RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD  298 (764)
Q Consensus       258 -----~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~  298 (764)
                           +++..- .||...|..+.|+|+.+ .+++++.|+.+.||.+.
T Consensus       359 ~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 122333 48999999999999988 56788899999999764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=206.41  Aligned_cols=385  Identities=16%  Similarity=0.167  Sum_probs=259.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeE------EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCC
Q 004270          152 NKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMR  224 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~  224 (764)
                      ..|+++..+|.|.++|.+....      ++.+..|...|..+.|.|....|++++.|.++++||+++.+.... +..+|.
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~  144 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT  144 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence            6789999999999999765432      355678999999999999777899999999999999999888766 233458


Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---------------------------eeeeecccccCeeE---E
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS---L  274 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---------------------------~~~~~~~h~~~v~~---l  274 (764)
                      +.|.+++|.|+...++++|+.||.|.|||++-...                           +..- .+|...|.+   +
T Consensus       145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTV  223 (720)
T ss_pred             cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEE
Confidence            99999999999998999999999999999863220                           0001 134455555   5


Q ss_pred             EEecCCCEEEEEcC-CCcEEEEEecCCCCCc----eeeEeccCC---CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270          275 HFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       275 ~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      .+..|...|+++|. |+.|+|||+.......    .....+..|   ...+.++.....|.+|+..+.|++|..|++...
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            66678889999988 9999999998764221    222222233   345677777778888888888999999998754


Q ss_pred             cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (764)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  426 (764)
                      ........                         ...                                       .....
T Consensus       304 s~sP~~~~-------------------------sg~---------------------------------------~~~sf  319 (720)
T KOG0321|consen  304 SISPVAEF-------------------------SGK---------------------------------------LNSSF  319 (720)
T ss_pred             CcCchhhc-------------------------cCc---------------------------------------cccee
Confidence            32211100                         000                                       00122


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC
Q 004270          427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKG  505 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~  505 (764)
                      -..-..+|++.++++|+.++..++|.+.+...-....       .+|.-.|++++|.|.. .-+++++.|..+++|++..
T Consensus       320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             eeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            3344679999999999999999999998876655443       5999999999998843 4578889999999999865


Q ss_pred             CCee--------------eeEecC-cc-------------------------eEEEEEeecCCEEEEEe----CCCeEEE
Q 004270          506 RDLK--------------SRWEVG-CS-------------------------LVKIVYHRVNGLLATVA----DDLVIRL  541 (764)
Q Consensus       506 ~~~~--------------~~~~~~-~~-------------------------i~~~~~s~~~~~la~~~----~d~~i~v  541 (764)
                      +-..              ..++.+ ..                         ...++..|.+.-...+.    ..-.|..
T Consensus       393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~i~~  472 (720)
T KOG0321|consen  393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSGIVV  472 (720)
T ss_pred             chhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCccccccccee
Confidence            4111              111111 01                         11122222222222111    1112333


Q ss_pred             EEccCCeEEEE--eecCCCCeeEEEEcCCCcEEEEEeC-----------CCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          542 FDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       542 ~d~~~~~~~~~--~~~h~~~i~~l~~s~dg~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                      .+....+....  -.+|...|+...+++.++.+++.+-           ++.+++|...........+.......+.|+|
T Consensus       473 ~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~ifs~  552 (720)
T KOG0321|consen  473 FPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLIFSP  552 (720)
T ss_pred             cchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccccccceeccC
Confidence            33332222211  1246777888888888878888887           8899999877655544443333455566665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.3e-24  Score=214.87  Aligned_cols=286  Identities=20%  Similarity=0.305  Sum_probs=219.4

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccC--CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~--~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                      ....++...++-..|++++. ..+.||.+....    +...+....  .-.+..+.|..--.++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            34566677788888888776 467777765332    222221111  12345677876555699999999999999998


Q ss_pred             C---ceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270          256 K---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (764)
Q Consensus       256 ~---~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~  330 (764)
                      .   .+.+..+. .|...++++.|++-.+ +|++||.||+|++||++...    -...+.+....|..+.|+| .+..++
T Consensus       119 k~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----S~~t~~~nSESiRDV~fsp~~~~~F~  193 (839)
T KOG0269|consen  119 KSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----SKSTFRSNSESIRDVKFSPGYGNKFA  193 (839)
T ss_pred             ccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc----ccccccccchhhhceeeccCCCceEE
Confidence            7   45556666 8999999999998664 89999999999999998774    3444557888999999999 778889


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      ++...|.+++||++......                                                            
T Consensus       194 s~~dsG~lqlWDlRqp~r~~------------------------------------------------------------  213 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCE------------------------------------------------------------  213 (839)
T ss_pred             EecCCceEEEeeccCchhHH------------------------------------------------------------
Confidence            99999999999987543211                                                            


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                                                                       ..+        .+|.+.|.++.|+|++.+||
T Consensus       214 -------------------------------------------------~k~--------~AH~GpV~c~nwhPnr~~lA  236 (839)
T KOG0269|consen  214 -------------------------------------------------KKL--------TAHNGPVLCLNWHPNREWLA  236 (839)
T ss_pred             -------------------------------------------------HHh--------hcccCceEEEeecCCCceee
Confidence                                                             111        38999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCC--eeeeEecCcceEEEEEeecCCEE-EEEe--CCCeEEEEEccCCe-EEEEeecCCCCeeEEE
Q 004270          491 SAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGLL-ATVA--DDLVIRLFDVVALR-MVRKFEGHTDRITDFC  564 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~l-a~~~--~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~  564 (764)
                      |||.|+.|+|||..+.+  .+.++....++.++.|-|+..+. |+++  .|..|+|||+...- +..++..|+..++.++
T Consensus       237 TGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~  316 (839)
T KOG0269|consen  237 TGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA  316 (839)
T ss_pred             ecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence            99999999999998664  45566666999999999987754 4443  47899999998653 4667889999999999


Q ss_pred             EcC-CCcEEEEEeCCCcEEEEEcCccc
Q 004270          565 FSE-DGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       565 ~s~-dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                      |-. |-..|.+++.||+|..-.++++.
T Consensus       317 W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  317 WDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ccCCCceeeEeecCccHHHHhhhhccc
Confidence            965 55678899999998877666543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=3.3e-22  Score=198.01  Aligned_cols=486  Identities=15%  Similarity=0.166  Sum_probs=305.8

Q ss_pred             ceEEEEEeCC--eEEEEECCeEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCccccccee
Q 004270           58 KIRALASYRD--YTFAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVG  131 (764)
Q Consensus        58 ~I~~~~~~~~--~~~~a~g~~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~  131 (764)
                      .|..+||-||  ...+|.|+.+.+||.  |..+.+++||++.|.++++  ||+.++||+.|..|.+|.-.-.       .
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-------G   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-------G   86 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------c
Confidence            7899999999  456788999999996  6678889999999999998  8999999999999999975432       2


Q ss_pred             eEec-CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270          132 HVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV  210 (764)
Q Consensus       132 ~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~  210 (764)
                      .++. |...+.++.|+|-.  ..+++++-. ..-+|..... .+...+. ...|.+++|..||++++.|-.+|+|.|-|-
T Consensus        87 ~LkYSH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eeeeccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            3333 45666667799998  678877664 4788986433 3333332 567899999999999999999999999974


Q ss_pred             cCCceEEEEe--ccCCCCEEEEEEeeCCC----CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270          211 RYDEELVTFT--HSMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (764)
Q Consensus       211 ~~~~~~~~~~--~~~~~~v~~l~fs~d~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  284 (764)
                       ++++...+.  ++.+.+|.+++|+|...    .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.+++
T Consensus       162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEEE
Confidence             455544444  34478999999998642    378888888999999874 55554433 3445678999999999999


Q ss_pred             EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH-hh
Q 004270          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA-RK  363 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~  363 (764)
                      .|+.|+.+++|.-+.     ..+.+.......|..++..|+++.++.|+.||++..|++...............++. ..
T Consensus       239 iGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtD  313 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTD  313 (1081)
T ss_pred             EccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHH
Confidence            999999999994322     455566567789999999999999999999999999998654332211111000000 00


Q ss_pred             ccchhhhhccCceeEeeecccc--cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270          364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (764)
                      .-  ...+....-..+.+...-  -.-+.+-++.. -...+.+|...+.............-.....+--.--+++.++.
T Consensus       314 Vi--vQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQ-Lpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl  390 (1081)
T KOG1538|consen  314 VI--VQHLITEQKVRIKCKDLVKKIAIYRNRLAVQ-LPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL  390 (1081)
T ss_pred             HH--HHHHhhcceeeeeHHHHHHHHHhhhhhheec-ccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence            00  000000000000000000  00000001110 11234444443322211111000000011111112223444444


Q ss_pred             EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE--CC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcce
Q 004270          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL  518 (764)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i  518 (764)
                      . .+..+..+|...-..+.-.          ..+-|+-+.+  -| ...-|+.|-.+|.|.--=+++.-++........|
T Consensus       391 C-qekrLqClDF~Gvk~ReW~----------M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv  459 (1081)
T KOG1538|consen  391 C-QEKRLQCLDFSGVKEREWQ----------MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV  459 (1081)
T ss_pred             E-cccceeeecccchhhhhhh----------HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence            3 5666777776543222111          1111111111  12 2356777888887654445555555555566889


Q ss_pred             EEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEE
Q 004270          519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLR  582 (764)
Q Consensus       519 ~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~  582 (764)
                      .|+.++...+.||+..+.++..++|+.+++.+..-    ..+++++|+... .+|+..+. |.+.
T Consensus       460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~MlcfT~~-g~L~  519 (1081)
T KOG1538|consen  460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLCFTGG-GYLN  519 (1081)
T ss_pred             EEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEEEecC-CceE
Confidence            99999999999999999999999999999876543    357889997643 34443332 4443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-22  Score=208.47  Aligned_cols=276  Identities=13%  Similarity=0.179  Sum_probs=223.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .|....+.++|.|+|.+|.+++.||.|++|+.... +....+.. +...|.+++..  +. .|++|+.+++|.+|.+.++
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~--s~-~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY--SN-HFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeec--cc-ceEEeeccceEEEeeCCCC
Confidence            57888999999999999999999999999998776 33333332 35677777764  33 7899999999999999988


Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      ..-..+. -..-+++.++|+.+|++++.||.|-.|++-+.+..    ...+.+.+|.++|.++.|+|++++|++.+.||.
T Consensus        87 ~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   87 EEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             Cccceee-eeeccceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            7765555 56678999999999999999999999999988766    456667899999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |++|++.++.....+..-..                  ...+                                      
T Consensus       162 v~iw~~~~~~~~~tl~~v~k------------------~n~~--------------------------------------  185 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDK------------------DNEF--------------------------------------  185 (933)
T ss_pred             EEEEEcccchhhhhcccCCc------------------cccc--------------------------------------
Confidence            99999987766555432100                  0000                                      


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                          .....+..++|+|+|..+++...++.|.+|+..+......+..      ..+...+..+.|+|+|+|||+++.||.
T Consensus       186 ----~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~------~~~ss~~~~~~wsPnG~YiAAs~~~g~  255 (933)
T KOG1274|consen  186 ----ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD------KLSSSKFSDLQWSPNGKYIAASTLDGQ  255 (933)
T ss_pred             ----cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc------cccccceEEEEEcCCCcEEeeeccCCc
Confidence                0125677899999999999999999999999999988887763      345555999999999999999999999


Q ss_pred             EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (764)
                      |.|||.++...   ......|.+++|.|+.+-+-.
T Consensus       256 I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  256 ILVWNVDTHER---HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             EEEEecccchh---ccccceeEEEecCCCCCeeEE
Confidence            99999998222   333478999999998764433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1e-22  Score=193.43  Aligned_cols=304  Identities=16%  Similarity=0.167  Sum_probs=233.4

Q ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEEccCC---c-eEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       166 wd~~~~~~~~~~~~h~~~i~~~~~sp~~--~~la~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      +|+.+-......+.+.++|++++|+|..  +++|+|..-|.|-+||+.+.   . .+..+ ..|.++|.+|.|+|.+...
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhh
Confidence            4555556666777889999999999975  58899999999999999522   2 23333 4458999999999988778


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeec-ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      +++.+.||+|++-|++++.....+.. .....+.++.|+.+.+.++.+..=|...+||.++....   ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccc
Confidence            99999999999999988754444331 23456778899988888888888789999999887643   333456888999


Q ss_pred             eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       319 ~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      +++++| ...+|+|++.|++.+|||++.-....+                                              
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------------------------------------------  360 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------------------------------------------  360 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------------------
Confidence            999999 667899999999999999864321110                                              


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                                          |    +                   +         ....|...|
T Consensus       361 ------------------------------------p----~-------------------l---------st~~HrrsV  372 (498)
T KOG4328|consen  361 ------------------------------------P----F-------------------L---------STLPHRRSV  372 (498)
T ss_pred             ------------------------------------c----c-------------------e---------eccccccee
Confidence                                                0    0                   0         013799999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEC----CCCCeeeeEecC------cceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270          478 VGVACDSTNTLMISAGYHGDIKVWDF----KGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~v~iwd~----~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      .+..|||.+-.|++.+.|..|+|||.    ..-.+..++.|.      -......|.|+..++++|-.-..|-|+|-..+
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            99999998888999999999999998    344566666654      23456789999999999999999999999999


Q ss_pred             eEEEEeecCCC-CeeE-EEEcCCCcEEEEE-eCCCcEEEEEcC
Q 004270          548 RMVRKFEGHTD-RITD-FCFSEDGKWLLSS-GMDGSLRIWDVI  587 (764)
Q Consensus       548 ~~~~~~~~h~~-~i~~-l~~s~dg~~l~s~-s~dg~i~iwd~~  587 (764)
                      +.+..+..... .|.+ ..|+|-+.-+++| +..|.|+||--+
T Consensus       453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            98888765543 4555 4799988745544 467888888644

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=6.7e-23  Score=200.78  Aligned_cols=317  Identities=14%  Similarity=0.184  Sum_probs=236.7

Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV  343 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~  343 (764)
                      .+|.+.|.++...|.|.+|++|+.||+|++|.+.++    ++++.. ...+.|.|++|+|.+. .++..+.+..+.+.+.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            499999999999999999999999999999999887    677665 3456899999999553 3334444444666655


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      .-+.............             ..|                  .-...+..+..|.-........-+.....+
T Consensus       472 ~~G~~~e~~~t~ell~-------------~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~  520 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLA-------------SAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH  520 (733)
T ss_pred             cccchhhhcchhhhhh-------------cCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence            4432211111000000             000                  001223355566554332222222333356


Q ss_pred             CCCeEEEEEccCCCEEEEEecCC---cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          424 PTAVKACTISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      ...|+.+.|+..|.||++...++   .|.++++........|.        ...+.|.++.|+|...+|+.++. ..|++
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi  591 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI  591 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence            78999999999999999887654   78889888776665553        56788999999999998888876 78999


Q ss_pred             EECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (764)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d  578 (764)
                      ||+..+.++..+... ..|..++.+|.|.-|++|+.|+.+..||+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999998887777655 78999999999999999999999999999755 6778899999999999999999999999999


Q ss_pred             CcEEEEE------cCccc---eEEEEeeCCc-----eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          579 GSLRIWD------VILAR---QIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       579 g~i~iwd------~~~~~---~~~~~~~~~~-----v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      |++.|+-      +-.+.   ++..+++|..     |..+.|+|...+|.++++|+ +|++|.
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT  733 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT  733 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence            9999984      32222   3455565542     78889999999999999999 699984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.8e-22  Score=180.02  Aligned_cols=256  Identities=16%  Similarity=0.250  Sum_probs=196.7

Q ss_pred             eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec--CCCEEEEEeCCCcEE
Q 004270          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFR  339 (764)
Q Consensus       262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~i~  339 (764)
                      .+..+|..-|.++.|.+-|+.+++++.|++++|||++...+.+.+....+.|.+.|..+.|.+  -|+.+++++.|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            444589999999999999999999999999999999888899999999999999999999976  689999999999999


Q ss_pred             EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (764)
Q Consensus       340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (764)
                      +|.-........                                                  -+                
T Consensus        87 iWEE~~~~~~~~--------------------------------------------------~~----------------  100 (361)
T KOG2445|consen   87 IWEEQEKSEEAH--------------------------------------------------GR----------------  100 (361)
T ss_pred             eeeecccccccc--------------------------------------------------cc----------------
Confidence            997431100000                                                  00                


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCEEEEEeCCCe
Q 004270          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGD  497 (764)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~  497 (764)
                           ..+.                              +..+        ....+.|+.+.|.|  -|-.+++++.||.
T Consensus       101 -----~Wv~------------------------------~ttl--------~DsrssV~DV~FaP~hlGLklA~~~aDG~  137 (361)
T KOG2445|consen  101 -----RWVR------------------------------RTTL--------VDSRSSVTDVKFAPKHLGLKLAAASADGI  137 (361)
T ss_pred             -----eeEE------------------------------EEEe--------ecCCcceeEEEecchhcceEEEEeccCcE
Confidence                 0000                              0011        25567788888888  4678899999999


Q ss_pred             EEEEECCCC------CeeeeEe--------cCcceEEEEEeec---CCEEEEEeCC-----CeEEEEEccCC----eEEE
Q 004270          498 IKVWDFKGR------DLKSRWE--------VGCSLVKIVYHRV---NGLLATVADD-----LVIRLFDVVAL----RMVR  551 (764)
Q Consensus       498 v~iwd~~~~------~~~~~~~--------~~~~i~~~~~s~~---~~~la~~~~d-----~~i~v~d~~~~----~~~~  551 (764)
                      +|||+....      .+..+++        ...+..|+.|+|.   ..+||+|+.+     +.+.||....+    ..+.
T Consensus       138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva  217 (361)
T KOG2445|consen  138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA  217 (361)
T ss_pred             EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence            999986543      3333333        3466778889873   4589999876     57888876543    3466


Q ss_pred             EeecCCCCeeEEEEcCCC----cEEEEEeCCCcEEEEEcCcc--------------------ceEEEEeeCC-ceEEEEE
Q 004270          552 KFEGHTDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILA--------------------RQIDAIHVDV-SITALSL  606 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg----~~l~s~s~dg~i~iwd~~~~--------------------~~~~~~~~~~-~v~~l~~  606 (764)
                      ++.+|+.+|++++|.|+-    ..||+++.|| |+||.+...                    +.+..+..|. .|..+.|
T Consensus       218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            788999999999999963    4799999999 999998731                    1334444555 6999999


Q ss_pred             cCCCCeEEEEEeCCCeEEEEec
Q 004270          607 SPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       607 sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      +-.|..|++++.|| .|++|.-
T Consensus       297 NmtGtiLsStGdDG-~VRLWka  317 (361)
T KOG2445|consen  297 NMTGTILSSTGDDG-CVRLWKA  317 (361)
T ss_pred             eeeeeEEeecCCCc-eeeehhh
Confidence            99999999999999 5999974

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=1e-19  Score=195.95  Aligned_cols=372  Identities=26%  Similarity=0.457  Sum_probs=291.3

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEE-eeCCCCEEEE-EeCCCcEEE
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLAS-GASSGVISI  251 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~f-s~d~~~~l~s-g~~dg~i~i  251 (764)
                      ..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++. +..++.+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3556789999999999999999999999999999999887 666666643346777777 7777634444 344899999


Q ss_pred             EECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-E
Q 004270          252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H  328 (764)
Q Consensus       252 wd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~  328 (764)
                      ||... ......+. .|...|..+.|+|++..+++++. |+.+++|+....    ..+..+.+|...+.+++|+|++. .
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence            99988 67777777 89999999999999998888886 999999988763    56667778999999999999987 5


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      +++++.|+.+++||...+.....                                                         
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~---------------------------------------------------------  236 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRS---------------------------------------------------------  236 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence            55559999999997652221110                                                         


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEEECCCCC
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                                ....|.... ...+++++.++++++.++.+++|+...... ...+        ..|...+.++.++|++.
T Consensus       237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence                      111222332 228999999999999999999999987765 2222        27889999999999888


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeEe--cC-cceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                      .+++++.|+.+++|+..+........  .+ ..+..+.+.+++..++.+ ..|+.+.+|+............+. .+..+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  376 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV  376 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence            88889999999999998887766665  44 458888883332556555 678999999999887333333232 28899


Q ss_pred             EEcCCCcEEEE-EeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       564 ~~s~dg~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      .+++ ....+. +..++.+.+|+............. ..+....+++++..+++++.+. .+.+|+...
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  443 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT  443 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence            9999 544444 688999999999999888888777 7899999999999999988777 599999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=200.85  Aligned_cols=318  Identities=17%  Similarity=0.179  Sum_probs=218.0

Q ss_pred             EEEEEee--CCCCEEEEEeCCCcEEEEECCCceee------eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270          228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       228 ~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      .+..|++  +.+++|+.+..+|.|.++|.+.....      ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            3456654  45579999999999999998665332      223 38999999999999888999999999999999987


Q ss_pred             CCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      .....  .....||...|.+++|.+ +...|++|+.||.+.+||++-.........      ............ .|.  
T Consensus       132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~------~~~~~~~~n~~p-tps--  200 (720)
T KOG0321|consen  132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF------DNRIYGRHNTAP-TPS--  200 (720)
T ss_pred             ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH------hhhhhccccCCC-CCC--
Confidence            63322  223679999999999999 667889999999999999976541111000      000000000000 000  


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEE---EEEccCCCEEEEEec-CCcEEEEECc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ  454 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-~g~i~i~~~~  454 (764)
                                                     ... .........+...+.+   +.+..|...|++++. |+.|++||+.
T Consensus       201 -------------------------------kp~-~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  201 -------------------------------KPL-KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             -------------------------------chh-hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence                                           000 0000111112233333   555667778887776 9999999998


Q ss_pred             CCcccceecCccccccccc---cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEecC---cceEEEEEeec
Q 004270          455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV  526 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~  526 (764)
                      ..................|   ...++++..+..|.+|.+.+.|+.|++|++.+..  ++..+.+.   .--..-..+||
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            7655443332222222233   4468888999989999888889999999987543  33333332   22234567899


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCcc
Q 004270          527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~  589 (764)
                      +.++++|+.|...++|.+.+.+. ...+.||...|++++|.|.. .-+++++.|.+++||++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999999987654 55678999999999998742 34777899999999999654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-21  Score=177.19  Aligned_cols=254  Identities=15%  Similarity=0.210  Sum_probs=201.2

Q ss_pred             ecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        89 ~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      -.+|.+-|+++.||  |+++++|+.|++|+|||..+.......-.....|.+.+..+.+.+..|.+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            45899999999985  9999999999999999987766655556778889999999999999998999999999999999


Q ss_pred             eCC---------CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCceEEEEe------------ccC
Q 004270          167 NIS---------TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSM  223 (764)
Q Consensus       167 d~~---------~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~  223 (764)
                      .=.         .-....++....+.|+.+.|.|.  |-.||+++.||.+|||+...--.+....            ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            641         11244566777899999999996  6689999999999999876433222221            122


Q ss_pred             CCCEEEEEEeeCC--CCEEEEEeCC-----CcEEEEECCCc----eeeeeeecccccCeeEEEEecCC----CEEEEEcC
Q 004270          224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA  288 (764)
Q Consensus       224 ~~~v~~l~fs~d~--~~~l~sg~~d-----g~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~  288 (764)
                      ..+..|+.|+|..  +.+||.|+.+     +.+.||....+    ..+..+. +|..+|++++|.|+-    ..|++++.
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence            4578899999753  3478888765     57889876544    2344555 899999999999963    38999999


Q ss_pred             CCcEEEEEecCC----------------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      || |+||.+...                +-....+..+.+|.+.|..++|+-.|..|.+.|.||.+|+|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            99 999998741                11123455678999999999999999999999999999999754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=208.92  Aligned_cols=283  Identities=16%  Similarity=0.241  Sum_probs=212.6

Q ss_pred             CcceEEEEEeCCe-EEEEECCe-EEEEecCce-----E-EEecccc---cceEEEE---EeCCEEEEEecCCcEEEEEcc
Q 004270           56 PKKIRALASYRDY-TFAAYGNH-IAVVKRAHQ-----V-ATWSRHS---AKVNLLL---LFGEHILSIDIDGNMFIWAFK  121 (764)
Q Consensus        56 ~~~I~~~~~~~~~-~~~a~g~~-i~vw~~~~~-----~-~~~~~h~---~~v~~l~---~~g~~l~s~~~dg~v~vWd~~  121 (764)
                      +..+.+++..++. ..+..|.. +.+|.....     . ....+..   -.+..+.   ++.++|++++..|.|.+||+.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            5667788888883 33344444 666653211     1 1111111   1122233   368899999999999999998


Q ss_pred             CCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEE
Q 004270          122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC  200 (764)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~  200 (764)
                      .... ...+..+..|...+..+.||+... +.|++|+.||.|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus       119 k~~r-nk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIR-NKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             cccc-chhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            7311 111445666778888888998876 79999999999999999999999999999999999999995 67899999


Q ss_pred             cCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270          201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       201 ~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      ..|.+++||++... ...++.. |.++|.|+.|+|++. +||+|+.|+.|+|||+.+.+...........+|..+.|-|.
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            99999999998654 4555555 499999999999887 99999999999999998765433333235678999999998


Q ss_pred             CC-EEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270          280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       280 ~~-~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      .+ .|++++  .|-.|+|||+..+-   .+...+..|...++.++|.. |...+.+++.||++..-.+..
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            76 556655  48899999997652   45667789999999999976 566788999999876554443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-22  Score=192.67  Aligned_cols=292  Identities=14%  Similarity=0.223  Sum_probs=228.4

Q ss_pred             EEcCCeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEE
Q 004270          199 GCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLH  275 (764)
Q Consensus       199 g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~  275 (764)
                      ++....+++||+...+....+.++. ...+.++.|.......+++.+.|..+++|.-...  +....-. .....-.|++
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~   86 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVA   86 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHh
Confidence            3344579999998776655555332 2348899998766423334456778899974332  1111111 1222334444


Q ss_pred             EecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccch
Q 004270          276 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR  355 (764)
Q Consensus       276 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  355 (764)
                      ......++++|+..+.|++||+...    .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++.. 
T Consensus        87 ~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-  161 (673)
T KOG4378|consen   87 CASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-  161 (673)
T ss_pred             hhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-
Confidence            4445579999999999999999855    67888899999999999999999999999999999999887765544432 


Q ss_pred             hhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC
Q 004270          356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  435 (764)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  435 (764)
                                                                                        +....++-+.+++.
T Consensus       162 ------------------------------------------------------------------~sgqsvRll~ys~s  175 (673)
T KOG4378|consen  162 ------------------------------------------------------------------DSGQSVRLLRYSPS  175 (673)
T ss_pred             ------------------------------------------------------------------CCCCeEEEeecccc
Confidence                                                                              11245667888887


Q ss_pred             CCE-EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270          436 GNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWE  513 (764)
Q Consensus       436 g~~-l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~  513 (764)
                      .++ |.+++.+|.|.+||++...+...+.       ..|..+..+|+|+|.+ .+|++.|.|..|.+||....+....+.
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~  248 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT  248 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence            765 5577889999999999988888776       5899999999999965 677899999999999999999999999


Q ss_pred             cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCC
Q 004270          514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       514 ~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg  569 (764)
                      ...+.+.++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|.-
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999999999999999999999865 5688899999999999997753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.3e-24  Score=214.57  Aligned_cols=251  Identities=17%  Similarity=0.259  Sum_probs=219.1

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCceEEE--ecccccceEEE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLL   99 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~~~~--~~~h~~~v~~l   99 (764)
                      +..++..+..+..+++||.+...      .|...+.|+..-....++++|+.   +-+|..++....  +.+|..+|.++
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~~~~------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTREFV------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL   76 (825)
T ss_pred             cccccceeeeeeccccccchhhh------hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence            34556667777888899876632      36677788887666888888865   668887776443  89999999999


Q ss_pred             EE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270          100 LL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF  177 (764)
Q Consensus       100 ~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  177 (764)
                      .+  +...|++|+.+|+|++||++..+.    ++++.+|......+.|||-+  .+.+.|+.|+.+.+||++...+.+.+
T Consensus        77 ~f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~  150 (825)
T KOG0267|consen   77 TFDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTY  150 (825)
T ss_pred             ecCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeee
Confidence            98  477899999999999999998888    78888888888999999999  77899999999999999988999999


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      ++|...|.+++|+|+|+++++|+.|..++|||+..|+.+..|..+ .+.+.++.|+|..- ++++|+.|+++++||+++.
T Consensus       151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeecccee
Confidence            999999999999999999999999999999999999999999876 88999999999877 9999999999999999999


Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCC
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~  290 (764)
                      +.+.... .....|.++.|+|++..+++|..+.
T Consensus       229 e~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  229 EVISSGK-PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             EEeeccC-CccCCceeeeecCCceeeecCchhh
Confidence            9888887 5688999999999999888876543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=3.8e-19  Score=191.39  Aligned_cols=369  Identities=27%  Similarity=0.506  Sum_probs=290.1

Q ss_pred             cCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCC-CeEEEEE-cCCCC-EEEEEEc-CCeEEEEE
Q 004270          135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGS-SISSCVS-SPALD-VVAVGCS-DGKIHVHN  209 (764)
Q Consensus       135 ~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~-~i~~~~~-sp~~~-~la~g~~-dg~i~iwd  209 (764)
                      .+...+....+.+.+  ..++.++.++.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+
T Consensus        63 ~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          63 GHEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eccceEEEEEECCCC--cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            355666777788888  678888899999999998887 7777777443 7777777 88887 5555444 89999999


Q ss_pred             ccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEE
Q 004270          210 VRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSA  286 (764)
Q Consensus       210 ~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~  286 (764)
                      ... ......+..+ ...|..++|+|++. .+++++. ++.+++|++..++.+..+. +|...|.+++|+|+++ .++++
T Consensus       141 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         141 LSTPGKLIRTLEGH-SESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             ecCCCeEEEEEecC-cccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEe
Confidence            998 6666666655 78899999999998 7777775 9999999999988888888 7999999999999998 55555


Q ss_pred             cCCCcEEEEEecCCCCCceeeE-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc-cccccchhhhHHHhhc
Q 004270          287 SADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKL  364 (764)
Q Consensus       287 ~~d~~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~  364 (764)
                      +.|+.+++|+....    .... .+.+|.... ...|++++..+++++.|+.+++|++..... ...             
T Consensus       218 ~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------  279 (466)
T COG2319         218 SSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT-------------  279 (466)
T ss_pred             cCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------------
Confidence            99999999966522    4444 577888876 448999998899999999999999875432 000             


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                                                                          .   ..|...+.++.+.|++..+++++.
T Consensus       280 ----------------------------------------------------~---~~~~~~v~~~~~~~~~~~~~~~~~  304 (466)
T COG2319         280 ----------------------------------------------------L---SGHSSSVLSVAFSPDGKLLASGSS  304 (466)
T ss_pred             ----------------------------------------------------E---ecCCccEEEEEECCCCCEEEEeeC
Confidence                                                                0   133578899999999998888999


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  523 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~  523 (764)
                      ++.+.+|+..+........      ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.+
T Consensus       305 d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
T COG2319         305 DGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF  378 (466)
T ss_pred             CCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence            9999999888776655542      12677789999994332456555 6889999999998873333333344888888


Q ss_pred             eecCCEEEE-EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          524 HRVNGLLAT-VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       524 s~~~~~la~-~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      ++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|++.+
T Consensus       379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            88 543443 68899999999999988877776547899999999999999999999999999988

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=6.1e-24  Score=212.69  Aligned_cols=253  Identities=15%  Similarity=0.320  Sum_probs=218.3

Q ss_pred             EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH
Q 004270          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (764)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  361 (764)
                      +++....+-.+++|+....          ..|...+.++..-..++.+++|+.|..+.+|.+........          
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S----------   65 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS----------   65 (825)
T ss_pred             ccceeeeeeccccccchhh----------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence            4444445556778865322          36888888888866888999999999999998754322211          


Q ss_pred             hhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (764)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (764)
                                                                                ..+|..+|.++.|++...+++.
T Consensus        66 ----------------------------------------------------------~~~hespIeSl~f~~~E~Llaa   87 (825)
T KOG0267|consen   66 ----------------------------------------------------------LTGHESPIESLTFDTSERLLAA   87 (825)
T ss_pred             ----------------------------------------------------------eeccCCcceeeecCcchhhhcc
Confidence                                                                      1256799999999999999999


Q ss_pred             EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEE
Q 004270          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK  520 (764)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~  520 (764)
                      |+.+|.|++||+..++....+.        +|...+..+.|+|-+.+.++++.|+.+++||.+...+...+..+ ..+..
T Consensus        88 gsasgtiK~wDleeAk~vrtLt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVRTLT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             cccCCceeeeehhhhhhhhhhh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence            9999999999999999888775        99999999999999999999999999999999988888888876 66788


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-C
Q 004270          521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-V  599 (764)
Q Consensus       521 ~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~  599 (764)
                      +.|+|+|++++.|++|..++|||...|+....|.+|.+.+..+.|+|..-++++||.|++|++||+++-+.+...... .
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~  239 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD  239 (825)
T ss_pred             EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998888776554 3


Q ss_pred             ceEEEEEcCCCCeEEEEEeCC
Q 004270          600 SITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       600 ~v~~l~~sp~g~~lat~~~d~  620 (764)
                      .|.+++|+|+|..++++....
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CceeeeecCCceeeecCchhh
Confidence            599999999999998887665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-21  Score=186.69  Aligned_cols=290  Identities=14%  Similarity=0.154  Sum_probs=231.3

Q ss_pred             EEEEEEeCCeEEEEecCCCeEEEecC--CCCcceEEEEEeCCe-EEEEE-CCe--EEEEecCce---EEE---ecccccc
Q 004270           28 NFVTVSVGKAFHIYNCAKLNLVLVGP--QLPKKIRALASYRDY-TFAAY-GNH--IAVVKRAHQ---VAT---WSRHSAK   95 (764)
Q Consensus        28 ~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~~I~~~~~~~~~-~~~a~-g~~--i~vw~~~~~---~~~---~~~h~~~   95 (764)
                      .+..++.+..+.+||....+..-...  ..+-.|.++.+.... +.+|+ ++.  |++|...++   +..   +.|.  .
T Consensus         4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~   81 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--N   81 (673)
T ss_pred             ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--h
Confidence            36677888999999999866554331  123348899988775 44444 333  888975433   222   3343  3


Q ss_pred             eEEEE--EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270           96 VNLLL--LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (764)
Q Consensus        96 v~~l~--~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~  173 (764)
                      -+|++  -...++++|+..+.|+|||+....+    .+.++.|...+..+.+....  .+|++++..|.|.|-++.++..
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCcc
Confidence            33443  3568999999999999999996665    56677777777777788777  7999999999999999999988


Q ss_pred             EEEEcCC-CCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          174 LYEFKGW-GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       174 ~~~~~~h-~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      ...|... ...|.-+.|+|..+ +|.+++.+|.|.+||+.....+..+...|..+...++|+|....+|++.+.|..|.+
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            8888654 45666899999876 455788899999999998889998888889999999999999889999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      ||....+....+.  ...+...++|.++|.+|+.|...|.|..||++...   .++..+..|...|++++|-+.. .+++
T Consensus       236 yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  236 YDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK---APVAVRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             eecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC---CCceEeeecccceeEEEeeecc-eeee
Confidence            9999888888876  56689999999999999999999999999997654   5677788999999999998865 3443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.89  E-value=3.1e-21  Score=175.60  Aligned_cols=351  Identities=14%  Similarity=0.160  Sum_probs=258.4

Q ss_pred             EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEccCCceEEEEe
Q 004270          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      -|.|+|++  +++++.+.- .+.|-|..+.+..+.+.. -+.|..+.|..|..+++ ....++.|.+|++...+-...+.
T Consensus        13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence            57899999  899999776 688889888777666554 45678889998876655 45678899999999888888888


Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      .+ ..++.+++|||||+++|.+...+-.|.+|.+.+.+....-.  ....+..++|+|||++.+.++.-.......+.. 
T Consensus        89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~-  164 (447)
T KOG4497|consen   89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS-  164 (447)
T ss_pred             cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence            77 78899999999999899999999999999998877655433  344578999999999988877532111111110 


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      -..+.+++.+.-..-..+.+.|+|||..|+.         ||..-..                                 
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley---------------------------------  202 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY---------------------------------  202 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence            1112445555556667889999999877664         4421100                                 


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                          .++.|                .-.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus       203 --------------------kv~aY----------------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  203 --------------------KVYAY----------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             --------------------eeeee----------------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence                                00000                011567889999999999999999999887654433322


Q ss_pred             eecCcccc----------------------------------------------------------ccccccCcEEEEEE
Q 004270          461 SYLDMSER----------------------------------------------------------SNYAHNGEVVGVAC  482 (764)
Q Consensus       461 ~~~~~~~~----------------------------------------------------------~~~~h~~~v~~l~~  482 (764)
                      .+......                                                          ......-.+.-++|
T Consensus       247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf  326 (447)
T KOG4497|consen  247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF  326 (447)
T ss_pred             hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence            22111000                                                          01122345777999


Q ss_pred             CCCCCEEEEEeC--CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270          483 DSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI  560 (764)
Q Consensus       483 ~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i  560 (764)
                      ++|..+++|-..  -..+-+||++..++...+....+|....|.|....|++......+++|.......+..-. ..-.|
T Consensus       327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i  405 (447)
T KOG4497|consen  327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNI  405 (447)
T ss_pred             cCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCcee
Confidence            999999888754  357999999999888888888999999999999999999888899999988766665543 33679


Q ss_pred             eEEEEcCCCcEEEEEeCCC
Q 004270          561 TDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       561 ~~l~~s~dg~~l~s~s~dg  579 (764)
                      .++.|.-+|..++-.+.|.
T Consensus       406 ~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  406 QKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             eeEEecCCCcEEEEEcCCc
Confidence            9999999999999999886

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=4.3e-21  Score=177.95  Aligned_cols=250  Identities=20%  Similarity=0.306  Sum_probs=193.5

Q ss_pred             ecccccceEEEEE----eCCEEEEEecCCcEEEEEccCCc------------ccccceeeEecCCccccEEEEeCCCCCC
Q 004270           89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN  152 (764)
Q Consensus        89 ~~~h~~~v~~l~~----~g~~l~s~~~dg~v~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~  152 (764)
                      ..+|.+.+..+..    +..+.++-+..|.|.||++....            ....|+.++..|......+.|+|..+ .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g  225 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G  225 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence            4567777777664    45678888889999999985421            13456778888888888999999665 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE---EEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKL---YEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAV  227 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v  227 (764)
                      .+++|..-+.|++|...+|.=.   ..|.+|...|-.++|||.. ..+|+|+.||+|+|||++.+.. ...+...|.+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            7999999999999998886432   3467899999999999964 5899999999999999998832 222224457899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCC-
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG-  302 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~-  302 (764)
                      ..++|+.+-. +||+|+.||+++|||++.   ++++..+. -|..+|+++.|+|.. ..++++|.|++|.+||+..... 
T Consensus       306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~  383 (440)
T KOG0302|consen  306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE  383 (440)
T ss_pred             eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence            9999999888 999999999999999975   46777887 899999999999954 5788889999999999875422 


Q ss_pred             --------------CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270          303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       303 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~  343 (764)
                                    .++++. ...-...+..+.|++ -..++++.+.|| +.+|..
T Consensus       384 ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  384 EEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             hhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence                          111222 112245678888988 345888888898 666653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=9.8e-21  Score=172.01  Aligned_cols=286  Identities=17%  Similarity=0.243  Sum_probs=213.7

Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc---------eeeEeccCCCCCCeeEEEe-------cCCCEEEEEe
Q 004270          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------RLLRFRSGHSAPPLCIRFY-------ANGRHILSAG  333 (764)
Q Consensus       270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~---------~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~~  333 (764)
                      -...+.|+|||..|++.+.|+.+++|++.......         ............|...+|.       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            45578899999999999999999999875432110         0111111233456666776       5678899999


Q ss_pred             CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (764)
Q Consensus       334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (764)
                      .+.-|++||.-+++....+..-....                                                      
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~d------------------------------------------------------  156 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQD------------------------------------------------------  156 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHH------------------------------------------------------
Confidence            99999999998887655543211100                                                      


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-cCCcccceecCccccccccccCcEEEEEECCCC-CEEEE
Q 004270          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS  491 (764)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s  491 (764)
                               .-....+++|+|||..|++|.. ..|++||+ +.|..-..+..... ...+..+-+.+++|+|.. +.++.
T Consensus       157 ---------e~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  157 ---------EYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             ---------hhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc-ccccccceeeeeeccCCCCcceee
Confidence                     0145678999999999998864 58999999 56655444331110 112447789999999965 58999


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC-CCeEEEEEccC-CeEEEEeecCCC-CeeEE--EE
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITDF--CF  565 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~-~~~~~~~~~h~~-~i~~l--~~  565 (764)
                      ++...++-||.-..+.++..+..+ +.|+.++|.++|+.|.+|.. |..|..||++. +.++..+..|.+ .=..|  ..
T Consensus       226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl  305 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL  305 (406)
T ss_pred             ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence            999999999999888888887665 89999999999999999876 77999999975 456777887765 22334  44


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCc-cceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCC
Q 004270          566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       566 s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~  620 (764)
                      .|+|++|++|+.||.|++||+++ |..+..+..++. ++.++++|--..+||++...
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            78999999999999999999998 776766665554 99999999999999887543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.8e-21  Score=183.28  Aligned_cols=240  Identities=17%  Similarity=0.311  Sum_probs=183.3

Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeE------------------ecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHV------------------KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~  164 (764)
                      |+++|.|+.|..|.|||+.-.....+ ...+                  ..|...+..+++..... +.|++||.|.+|+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVK  269 (463)
T ss_pred             cceEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEE
Confidence            78999999999999999865332111 1111                  11222223333333332 7899999999999


Q ss_pred             EEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          165 LWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      +||+.+|++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.... -..+..  .+.|-.++|.|.....+++
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEE
Confidence            9999999999999999999999999996 57899999999999999984222 222222  4789999999999888999


Q ss_pred             EeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          243 GASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       243 g~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      +..||+|+-+|+++. +++.++. +|.++|.++++++.-+ ++++++.|+.|++|+++....  +.+....-.-+...|.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCF  424 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeec
Confidence            999999999999876 8889998 9999999999998655 788999999999999986644  2222222222346777


Q ss_pred             EEecCC-CEEEEEeCCCcEEEEEeeccccc
Q 004270          321 RFYANG-RHILSAGQDRAFRLFSVIQDQQS  349 (764)
Q Consensus       321 ~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~  349 (764)
                      ++.|+- -.++.||..+.+++||+.+....
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccChhH
Confidence            888854 45677788888999999776543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=1.1e-20  Score=172.08  Aligned_cols=320  Identities=18%  Similarity=0.248  Sum_probs=220.1

Q ss_pred             cCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCc---eEEEEec-cCCCCEEEEEEeeC---CCCEEEEEeC
Q 004270          178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE---ELVTFTH-SMRGAVTALAFSSD---GQPLLASGAS  245 (764)
Q Consensus       178 ~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~-~~~~~v~~l~fs~d---~~~~l~sg~~  245 (764)
                      ..|..+|..++|.+     +-+.+|+.+. ..+.+|+.....   .++.... .+......++|+-|   +..++|+|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            46788999999985     2346666665 678999887544   2333332 24667888888754   4568999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEe---ccCCCCCCeeEE
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIR  321 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~  321 (764)
                      -|.|+|.|+.++++...+. +|...|+.+.|.|+. ++++++|.|.+||+|++.+.    .++..   ..||...|.++.
T Consensus       114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~----~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD----VCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC----eEEEEecccccccCcEEEEE
Confidence            9999999999999999999 999999999999976 58899999999999999877    34443   368999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCce
Q 004270          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (764)
Q Consensus       322 ~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (764)
                      |+++|.+|+++|.|.++++|++...+....+....      .........++|..                        .
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~------~~~~~~t~~pfpt~------------------------~  238 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSI------TYSPNKTTRPFPTP------------------------K  238 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhc------ccCCCCccCcCCcc------------------------c
Confidence            99999999999999999999997544322221100      00000000000000                        0


Q ss_pred             EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-cCCcccceecCcccc-----ccccccC
Q 004270          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNG  475 (764)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~-----~~~~h~~  475 (764)
                      ..          ...+....-|...|.|+.|-  |+++++-+-++.|..|.. +-++.......+...     ...-...
T Consensus       239 ~~----------fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c  306 (385)
T KOG1034|consen  239 TH----------FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC  306 (385)
T ss_pred             cc----------cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc
Confidence            00          00111112344555555554  588888888999999987 222221111111100     0111223


Q ss_pred             cEEE--EEECCCCCEEEEEeCCCeEEEEECCCCCee--eeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          476 EVVG--VACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       476 ~v~~--l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      .|.-  .+|++-+++||.|...|.|.+||++..+..  .++.+   ...|...+|+.|+.+|+..++|++|.-||.-
T Consensus       307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            3444  456777899999999999999999977653  22332   2789999999999999999999999999854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.2e-21  Score=176.03  Aligned_cols=287  Identities=19%  Similarity=0.327  Sum_probs=207.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEec--cCCCCE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAV  227 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v  227 (764)
                      +.++++...|+|++||..+++.+..|+++...++.+.|..  ..+.+.+++.||+|++||+++......+..  +...+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5699999999999999999999999999999999999987  567899999999999999998776655543  323467


Q ss_pred             EEEEEeeCCCCEEEEEe----CCCcEEEEECCCcee-eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCC
Q 004270          228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~----~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      .+++....++ ++++|.    .+-.|.+||++..+. +..+...|...|+++.|+|.. ++|++||.||-|.++|+....
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            7777766666 888876    466899999998865 777778999999999999965 499999999999999987765


Q ss_pred             CCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      ..-.++.. -.|...|.++.|..++ +.|.+-+...++.+|++..+.....+.........                   
T Consensus       200 EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d-------------------  259 (376)
T KOG1188|consen  200 EEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD-------------------  259 (376)
T ss_pred             chhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh-------------------
Confidence            44334333 3678889999999876 45888888999999999887755544432111100                   


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE-EEecCCcEEEEECc---CC
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV-LGTAGGWIERFNLQ---SG  456 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~~g~i~i~~~~---~~  456 (764)
                         .+..+...                                 .-|.+. ...++...+ .|+..|...++-+.   ++
T Consensus       260 ---~r~~~~~d---------------------------------Y~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~  302 (376)
T KOG1188|consen  260 ---LRKEDNCD---------------------------------YVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSG  302 (376)
T ss_pred             ---HHhhhhhh---------------------------------heeecc-cCCCcceEEEeccccCceeEEEeeecccc
Confidence               00000000                                 011111 111223333 33334555554433   22


Q ss_pred             cc---cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          457 IS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       457 ~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      ..   ...+.       .+|..-|+++.|...+..+.|||.||.+.+|..
T Consensus       303 ~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  303 SLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            22   22222       257778899999999999999999999999985

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=6.2e-21  Score=173.81  Aligned_cols=336  Identities=15%  Similarity=0.193  Sum_probs=226.6

Q ss_pred             ecccccceEEEEEe------CCEEEEEecCCcEEEEEccCCcccccceeeEe--cCCccccEEEEeCCCC--CCEEEEEe
Q 004270           89 WSRHSAKVNLLLLF------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVGS  158 (764)
Q Consensus        89 ~~~h~~~v~~l~~~------g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~~  158 (764)
                      ...|..+|..++|+      ...+++....+.+.+++........ .++...  -+.....+|++.-+.+  ...+++|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            45677777777763      2233333335667777765443100 011111  1334445666655543  24788899


Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEEeeC
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSD  235 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~d  235 (764)
                      .-|.|+|.|+.++++...+.+|...|+.+.+.|+. ++|++++.|..|++||++++.++..|-  .+|.+.|.++.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            99999999999999999999999999999999975 689999999999999999999998886  456889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      |. .+++++.|.+|++|++...+....+.       .+..|+|++...=.-  .-...+.++          .+..-|..
T Consensus       193 gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfp--t~~~~fp~f----------st~diHrn  252 (385)
T KOG1034|consen  193 GD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFP--TPKTHFPDF----------STTDIHRN  252 (385)
T ss_pred             CC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCC--ccccccccc----------cccccccc
Confidence            99 99999999999999998766544444       124566655321100  001112221          13457999


Q ss_pred             CCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      .|-|++|..  .++++-+-++.|..|..-.-... ....                    +|-                  
T Consensus       253 yVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~e------------------  292 (385)
T KOG1034|consen  253 YVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PPE------------------  292 (385)
T ss_pred             hHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CCc------------------
Confidence            999999974  68999999999999986311110 0000                    000                  


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                        .....+.-++++..             .-.....++.|.++.|+.|...|.|++||+........-..    .-....
T Consensus       293 --s~~Ti~~~~~~~~c-------------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~~~  353 (385)
T KOG1034|consen  293 --SATTILGEFDYPMC-------------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THSKSG  353 (385)
T ss_pred             --cceeeeeEeccCcc-------------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eecccc
Confidence              00000111111110             01233457788899999999999999999988766322110    001234


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..|...+|+.|+..|+....|++|.-||.-
T Consensus       354 ~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  354 STVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            578999999999999999999999999853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=8.2e-20  Score=171.41  Aligned_cols=161  Identities=25%  Similarity=0.354  Sum_probs=135.1

Q ss_pred             CCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCce---------EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270          181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEE---------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (764)
Q Consensus       181 ~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~---------~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~  250 (764)
                      ..+|..+.|.++.. .+|+|+.|..|++|-+..+..         +..+ ..|...|+++.|+|+|. +||+|+.+|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-lLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-LLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence            56888899988776 999999999999998874321         2233 34578999999999999 999999999999


Q ss_pred             EEECC--------C--------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       251 iwd~~--------~--------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      +|-..        +        ......+. +|...|..++|+|++.++++++.|+++++||+..+    .....+..|.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~  165 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE  165 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence            99765        2        12233344 89999999999999999999999999999999877    6788889999


Q ss_pred             CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      .-+..++|.|-++++++-+.|+..+.+++...+.
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence            9999999999999999999999888887765443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.87  E-value=2.4e-20  Score=169.83  Aligned_cols=343  Identities=14%  Similarity=0.193  Sum_probs=244.5

Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  265 (764)
                      -+.|||+|+++|+.+.- .+.|-|..+-+..+.+..  -..|..+.|..|..++|.....++.|.+|++...+-...+. 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence            46899999999999875 888889887776655554  35688999999998788888899999999999998888888 


Q ss_pred             ccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      ....++.+++|+|||+ .|.+...|-.|.+|.+.+..+  ..+   .-....+..++|+|||++.+.++.-...-.+++.
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EEe---cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            5677899999999996 556666799999999887643  122   2234556899999999998887653211111110


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      ..                                        .+|                         ..+....-..
T Consensus       164 ~c----------------------------------------~~W-------------------------~ll~~f~~dT  178 (447)
T KOG4497|consen  164 SC----------------------------------------KAW-------------------------ILLKEFKLDT  178 (447)
T ss_pred             hh----------------------------------------HHH-------------------------HHHHhcCCCc
Confidence            00                                        000                         0001111122


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      -..+.+.|+|||+.+++=.+--.-.++         .         ..-.-.+..++|+|.+++++.|+.|+.+|+.+--
T Consensus       179 ~DltgieWsPdg~~laVwd~~Leykv~---------a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------A---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             ccccCceECCCCcEEEEecchhhheee---------e---------eeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence            456778999999988864321111111         1         1234568889999999999999999999886532


Q ss_pred             CCCe------------------------------------------------------------eeeEe-------cCcc
Q 004270          505 GRDL------------------------------------------------------------KSRWE-------VGCS  517 (764)
Q Consensus       505 ~~~~------------------------------------------------------------~~~~~-------~~~~  517 (764)
                      +-+.                                                            +..++       ....
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            1100                                                            00011       0145


Q ss_pred             eEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE
Q 004270          518 LVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  595 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~  595 (764)
                      +..++|++|+.++|+-.+.  ..+.+||++..++...+. ...+|....|.|....|+.+.....+++|...-...+..-
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP  399 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP  399 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence            6789999999999987654  689999999877665554 5578999999999888888877788999997654444444


Q ss_pred             eeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270          596 HVDVSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       596 ~~~~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                      ...-.|..+.|.-+|++++..+.|.-
T Consensus       400 ~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  400 KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CCCceeeeEEecCCCcEEEEEcCCce
Confidence            33446999999999999999999873

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=176.11  Aligned_cols=282  Identities=21%  Similarity=0.283  Sum_probs=202.5

Q ss_pred             EEEEcCCCCEEEEEEcC---Ce--EEEEEccCCceEEEEeccC---CCCEEEEEEeeC-------CCCEEEEEeCCCcEE
Q 004270          186 SCVSSPALDVVAVGCSD---GK--IHVHNVRYDEELVTFTHSM---RGAVTALAFSSD-------GQPLLASGASSGVIS  250 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~d---g~--i~iwd~~~~~~~~~~~~~~---~~~v~~l~fs~d-------~~~~l~sg~~dg~i~  250 (764)
                      .+..-|..++|+++-.+   ..  |++|+-... .+  +.+|.   .....|++|...       |+ ++|.|+.+..|.
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nl--YvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~Ie  205 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NL--YVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIE  205 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ce--eEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCceeE
Confidence            45566766777776443   23  445543321 11  11111   234456666533       34 999999999999


Q ss_pred             EEECCCce---e-----------------eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          251 IWNLEKRR---L-----------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       251 iwd~~~~~---~-----------------~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      |||+.-..   +                 ......+|+..|.+++|+..- +.|++||.|.+|++||+++.    .+...
T Consensus       206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g----~p~~s  281 (463)
T KOG0270|consen  206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG----KPKSS  281 (463)
T ss_pred             EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC----Cccee
Confidence            99985210   0                 000113688899999998754 48999999999999999987    56666


Q ss_pred             ccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          310 RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                      +..|...|.++.|+| ....|++|+.|+++.+.|.+.......                                     
T Consensus       282 ~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-------------------------------------  324 (463)
T KOG0270|consen  282 ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-------------------------------------  324 (463)
T ss_pred             hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-------------------------------------
Confidence            778999999999999 778999999999999999875221111                                     


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCC-cccceecCcc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG-ISRGSYLDMS  466 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~-~~~~~~~~~~  466 (764)
                                     -|.+                .+.|-.++|.|.. ..+++++.||.++-+|+++. +.+.++    
T Consensus       325 ---------------~wk~----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~----  369 (463)
T KOG0270|consen  325 ---------------EWKF----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL----  369 (463)
T ss_pred             ---------------eEEe----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE----
Confidence                           1111                2778888998854 67888999999999999876 555555    


Q ss_pred             ccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecC-CEEEEEeCCCeEEE
Q 004270          467 ERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVN-GLLATVADDLVIRL  541 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~-~~la~~~~d~~i~v  541 (764)
                          .+|.+.|.++++++.. .++++++.|+.|++|++..........+.   +...|+++.|+- ..+|+|+..+.++|
T Consensus       370 ----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v  445 (463)
T KOG0270|consen  370 ----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV  445 (463)
T ss_pred             ----EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence                4999999999999854 57889999999999999865544333332   446677777765 46788888889999


Q ss_pred             EEccCCeEEE
Q 004270          542 FDVVALRMVR  551 (764)
Q Consensus       542 ~d~~~~~~~~  551 (764)
                      ||+.+...++
T Consensus       446 wd~~~~~~V~  455 (463)
T KOG0270|consen  446 WDIFTNSPVR  455 (463)
T ss_pred             eecccChhHH
Confidence            9998876544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=3.3e-19  Score=172.79  Aligned_cols=437  Identities=19%  Similarity=0.199  Sum_probs=274.3

Q ss_pred             ccccceEEEEEeC-CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC-------CCCEEEEEeCCCc
Q 004270           91 RHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT-------YLNKVIVGSQEGS  162 (764)
Q Consensus        91 ~h~~~v~~l~~~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~l~~~~~dg~  162 (764)
                      .|...|.++.+.+ .-++..+.|..+.+|.-.+.+.    ...+...+.++.+..+ +.+       ....++.++.||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCce
Confidence            5666676776633 3455555577766665444333    2233333444433322 211       1246889999999


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      +.+.+ +.++.-..+..|.+.+.|-.|+|||.-|++++.||.|++|. ++|-...++.+. ..+|+|++|.|+...++.+
T Consensus        87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   87 FVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             EEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEEe
Confidence            99998 68888889999999999999999999999999999999998 445544444443 6789999999999867766


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      .+  +.+.|=.+.....+-..+ +|.+-|.++.|++...++++|+.|-..++||-..     +.+..-..|..+|++++|
T Consensus       164 ~g--~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva~  235 (737)
T KOG1524|consen  164 QG--GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVAF  235 (737)
T ss_pred             cC--CeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeeee
Confidence            54  677777776665555666 8999999999999999999999999999996432     456666789999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      .|+ +.++.++.. ++|+=.                                                            
T Consensus       236 npd-~~~~v~S~n-t~R~~~------------------------------------------------------------  253 (737)
T KOG1524|consen  236 NPE-KDYLLWSYN-TARFSS------------------------------------------------------------  253 (737)
T ss_pred             ccc-cceeeeeee-eeeecC------------------------------------------------------------
Confidence            999 555555532 344111                                                            


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-cee----cCcccc---------
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSY----LDMSER---------  468 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~----~~~~~~---------  468 (764)
                                         ...+.|..++||+||..+++|+..|.+.+-..-..+.. ..+    ......         
T Consensus       254 -------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v  314 (737)
T KOG1524|consen  254 -------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGV  314 (737)
T ss_pred             -------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhH
Confidence                               12378999999999999999999998765332111110 000    000000         


Q ss_pred             -ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-------------------CcceEE------EE
Q 004270          469 -SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------------------GCSLVK------IV  522 (764)
Q Consensus       469 -~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~i~~------~~  522 (764)
                       ........|...+..  -.+|+++.. ..|++|.-+.-.....++.                   ...++-      ..
T Consensus       315 ~d~LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~  391 (737)
T KOG1524|consen  315 QDILEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLH  391 (737)
T ss_pred             HHHhhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCcee
Confidence             001223334444432  223333332 3455554332111111110                   001100      01


Q ss_pred             Eee-----------------cCCEEEEE--eCCCeEEEEEc-cCCeEEEE--eecCCCCeeEEEEc----CCCcEEEEEe
Q 004270          523 YHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVRK--FEGHTDRITDFCFS----EDGKWLLSSG  576 (764)
Q Consensus       523 ~s~-----------------~~~~la~~--~~d~~i~v~d~-~~~~~~~~--~~~h~~~i~~l~~s----~dg~~l~s~s  576 (764)
                      ++|                 ....|+.-  .+...+++||. .+++....  +-.|...|..++..    ++.+.++.-.
T Consensus       392 ~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiD  471 (737)
T KOG1524|consen  392 LNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFID  471 (737)
T ss_pred             cCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEe
Confidence            111                 12233332  22345677776 55554332  22366667767664    3557788888


Q ss_pred             CCCcEEEEEcCc-cceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          577 MDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       577 ~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ..+.++|=.+++ |+.-..++...-|..++|+..-+.| .+-.|++ +.+|-..
T Consensus       472 knrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt~-fsVWy~p  523 (737)
T KOG1524|consen  472 KNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDTC-FSVWYYP  523 (737)
T ss_pred             cCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccce-EEEEEcC
Confidence            888888877765 3444445556668999998766655 5556774 8899754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=2.3e-20  Score=173.23  Aligned_cols=209  Identities=19%  Similarity=0.277  Sum_probs=167.8

Q ss_pred             ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC----------------CeEEEEEcCCCCCeEEEEEcCCC-CEEEEEE
Q 004270          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGC  200 (764)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~  200 (764)
                      +.+..+...+-+.-...++-+..|.|+|||+..                .++++++.+|...=..++|||-. ..|++|.
T Consensus       152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD  231 (440)
T KOG0302|consen  152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD  231 (440)
T ss_pred             cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence            333444444443224667778899999999743                35788999999999999999943 3578887


Q ss_pred             cCCeEEEEEccCCceE---EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEE
Q 004270          201 SDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHF  276 (764)
Q Consensus       201 ~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~  276 (764)
                      --+.|++|...+|.-.   ..|.. |...|-.++|||..+.++++|+.||+|+|||++.+ +.......+|.+.|+.+.|
T Consensus       232 c~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW  310 (440)
T KOG0302|consen  232 CVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW  310 (440)
T ss_pred             cccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc
Confidence            7789999999887532   22333 58899999999998889999999999999999988 2222233489999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccc
Q 004270          277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      +.+.++|++|+.||+++|||++.-... ..+..+..|..+|+++.|+| +...|+++|.|..|.+||+.....
T Consensus       311 nr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  311 NRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             cCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999999999999999999999876544 67778889999999999999 667888999999999999975543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=166.45  Aligned_cols=308  Identities=16%  Similarity=0.238  Sum_probs=214.3

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      .+.+.+++|.+.|+++.|-.+++ |.+|...|.|++|++.+.+.+..+...+...|+.+.-.|++.  +.+-+.|+.+.+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l   81 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL   81 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence            35667789999999999998765 889999999999999999999888866688999999999865  788899999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      |++..+..+..    |.-.++++.|.+-.  +...+.   ...|-...........     |               ..-
T Consensus        82 w~ia~s~~i~i----~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~-----h---------------~~D  132 (323)
T KOG0322|consen   82 WTIAYSAFISI----HSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDET-----H---------------KQD  132 (323)
T ss_pred             EEccCcceEEE----eeeeccccccccce--eccCCC---cchhheecCCcccchh-----h---------------hhc
Confidence            99987654332    44556666666532  222211   1111111000000000     0               000


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ++.--.+++-|-.                                                                   
T Consensus       133 ~g~~tqv~i~dd~-------------------------------------------------------------------  145 (323)
T KOG0322|consen  133 GGDTTQVQIADDS-------------------------------------------------------------------  145 (323)
T ss_pred             cCccceeEccCch-------------------------------------------------------------------
Confidence            0101111111100                                                                   


Q ss_pred             ecceeecCCCCCCCCeEEEEEc-cCCC--EEEEEecCCcEEEEECcCCcccceecCcccc--ccccccCcEEEEEECCCC
Q 004270          412 LGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s-~~g~--~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~  486 (764)
                              .....+.+.+..+. .++.  ++++|+++|.+.+||+.++.....+......  ....|..+|.++.+.+.-
T Consensus       146 --------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~  217 (323)
T KOG0322|consen  146 --------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC  217 (323)
T ss_pred             --------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence                    00111333333321 1232  5678899999999999888554444322111  224799999999999877


Q ss_pred             CEEEEEeCCCeEEEEECCCC--Ce--eeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270          487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (764)
Q Consensus       487 ~~l~s~~~dg~v~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~  561 (764)
                      ..=++++.+..+..|++...  .+  ..++.. +..+..+.+-||++.+|+++.|+.||||+.++.+++..++-|.+.|+
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence            77788888889999988643  22  222332 36788999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          562 DFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +++|+||...+|++|+|++|.+|++
T Consensus       298 ~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=1.6e-19  Score=169.58  Aligned_cols=298  Identities=17%  Similarity=0.168  Sum_probs=215.3

Q ss_pred             ccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC-----ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       268 ~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      ..+|.++.|.++.. .++||+.|..|++|.++.....     ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45889999988776 9999999999999988765433     34566778999999999999999999999999999999


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      ....-...   .........                                        -..         ........
T Consensus        93 k~~~~~~~---~~d~e~~~~----------------------------------------ke~---------w~v~k~lr  120 (434)
T KOG1009|consen   93 KQGDVRIF---DADTEADLN----------------------------------------KEK---------WVVKKVLR  120 (434)
T ss_pred             EecCcCCc---cccchhhhC----------------------------------------ccc---------eEEEEEec
Confidence            86531100   000000000                                        000         11112223


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      +|...+..++|+|+++++++|+.|..+++||+..|.....+.        .|...+..++|+|.++++++-+.|...+.+
T Consensus       121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~  192 (434)
T KOG1009|consen  121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF  192 (434)
T ss_pred             ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence            577899999999999999999999999999999999998875        899999999999999999999999877777


Q ss_pred             ECCCCCeeeeEe--------------------cC----cceEEEEEeecCCEEEEEeC----CC-----eEEEEEccC-C
Q 004270          502 DFKGRDLKSRWE--------------------VG----CSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L  547 (764)
Q Consensus       502 d~~~~~~~~~~~--------------------~~----~~i~~~~~s~~~~~la~~~~----d~-----~i~v~d~~~-~  547 (764)
                      .+...+......                    +.    .-...++|+|+|.++++...    ++     ..++|+-.. .
T Consensus       193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence            766544333222                    01    22345789999999987643    22     335554332 2


Q ss_pred             eEEEEeecCCCCeeEEEEcC------------------CCcEEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEc
Q 004270          548 RMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS  607 (764)
Q Consensus       548 ~~~~~~~~h~~~i~~l~~s~------------------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~s  607 (764)
                      ++...+.+...+...+.|+|                  -+-.+|.++ ...|+|||.++-.++....  +-.+++.++|+
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws  351 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS  351 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeec
Confidence            34555666666666666665                  112344455 4569999999888876653  33469999999


Q ss_pred             CCCCeEEEEEeCCCeEEEEe
Q 004270          608 PNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       608 p~g~~lat~~~d~~~i~lW~  627 (764)
                      +||.+|+..+.||- ..+-.
T Consensus       352 ~dg~~l~vSS~DGy-CS~vt  370 (434)
T KOG1009|consen  352 DDGSVLLVSSTDGF-CSLVT  370 (434)
T ss_pred             CCCcEEEEeccCCc-eEEEE
Confidence            99999999999993 44433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=2.9e-19  Score=162.50  Aligned_cols=280  Identities=18%  Similarity=0.279  Sum_probs=207.3

Q ss_pred             CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEEc-CCCCCeEEEEEc-------CCCCE
Q 004270          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK------------KKLYEFK-GWGSSISSCVSS-------PALDV  195 (764)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~-~h~~~i~~~~~s-------p~~~~  195 (764)
                      +..+...|-++|++  ..|++-+.|..+.+|++...            +...+++ .....|...+|-       |+..+
T Consensus        48 p~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   48 PLNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             chhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            34566788999999  89999999999999997421            0111111 124556666664       67789


Q ss_pred             EEEEEcCCeEEEEEccCCceEEEEecc-CC---CCEEEEEEeeCCCCEEEEEeCCCcEEEEEC-CCceeeeee---e---
Q 004270          196 VAVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSVI---R---  264 (764)
Q Consensus       196 la~g~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~-~~~~~~~~~---~---  264 (764)
                      +|+.+.+.-|++||.-+|+....+..- |.   ....+++|+|||. .|++| ....|++||+ +.|+.....   .   
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhccc
Confidence            999999999999999999988777631 12   2457899999999 66655 5789999999 555322221   1   


Q ss_pred             cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEE
Q 004270          265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFS  342 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d  342 (764)
                      .+..+-+.+++|+|-.. .++.++...++-++.-+..    +++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence            13367889999999655 8999999999999876655    677778899999999999999999999885 67799999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      ++......---..                                                           +     .+
T Consensus       280 iR~~~~pv~~L~r-----------------------------------------------------------h-----v~  295 (406)
T KOG2919|consen  280 IRYSRDPVYALER-----------------------------------------------------------H-----VG  295 (406)
T ss_pred             ehhccchhhhhhh-----------------------------------------------------------h-----cc
Confidence            9764332110000                                                           0     01


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (764)
                      ....-.-..+.|+|++|++|+.+|.|++||++. +.....+.        .|...+++++++|--.++++++..
T Consensus       296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCc
Confidence            112233456678999999999999999999998 66555553        789999999999998888887764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.4e-20  Score=177.70  Aligned_cols=172  Identities=16%  Similarity=0.204  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVIS  250 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~  250 (764)
                      .+-..+.||.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|.|.. ..++++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            34456889999999999999999999999999999999999999999999999999999999953 34889999999999


Q ss_pred             EEECCCc----------eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC------ceeeEeccCC
Q 004270          251 IWNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD------PRLLRFRSGH  313 (764)
Q Consensus       251 iwd~~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h  313 (764)
                      ++|+...          ....... .|...|..++-.|++ +.+.+++.||+++.+|++....-      +..+......
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999752          2233333 799999999999999 58899999999999999764211      1111222223


Q ss_pred             CCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270          314 SAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       314 ~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .-...++..+| +..+|++|+.|-..++||.+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            34567899999 66789999999999999964

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.1e-19  Score=167.26  Aligned_cols=296  Identities=16%  Similarity=0.203  Sum_probs=211.9

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc------CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~------~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      ..+.+|.+.|.++.||.++++|++|+.|..+++|++.      +.+++....++|...|.|++|...++ .+++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcce
Confidence            3456899999999999999999999999999999986      45677777788889999999998877 8999999999


Q ss_pred             EEEEECCCceeeeeeeccccc---CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270          249 ISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-  324 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-  324 (764)
                      |...|+++.+.+....  |..   .|..+..+|-.+.|++.+.++.|.+||.........+ ..+.........+.|+| 
T Consensus       129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             eEeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCC
Confidence            9999999999888875  544   8999999999999999999999999998765432222 22334456678889999 


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      ...+|++.+..+-+.+||.+..........                                                  
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~--------------------------------------------------  235 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRS--------------------------------------------------  235 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhh--------------------------------------------------
Confidence            567788888888899999875432111000                                                  


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  484 (764)
                                 .+...+.....-.++.|+|+|+.                                              
T Consensus       236 -----------~~~~L~~~~~~~M~~~~~~~G~Q----------------------------------------------  258 (609)
T KOG4227|consen  236 -----------MFKGLPQENTEWMGSLWSPSGNQ----------------------------------------------  258 (609)
T ss_pred             -----------ccccCcccchhhhheeeCCCCCe----------------------------------------------
Confidence                       00000000011123344444444                                              


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe-eeeEecC-------cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---------
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDL-KSRWEVG-------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------  547 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~-------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~---------  547 (764)
                          +++--....-.+||+.+..+ +..+.+.       ..+.+++|-.|. .+++|+++-.|++|.+...         
T Consensus       259 ----~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~I  333 (609)
T KOG4227|consen  259 ----FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQI  333 (609)
T ss_pred             ----ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCcccc
Confidence                33333323333344433221 1111111       234566676544 4999999999999987531         


Q ss_pred             --------------eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          548 --------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       548 --------------~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                                    +.+..++||..-++.+.|+|...+|++.+-...+++|.-
T Consensus       334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                          235568999999999999999999999999999999964

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1e-20  Score=200.40  Aligned_cols=286  Identities=18%  Similarity=0.308  Sum_probs=219.8

Q ss_pred             EEEEEeeCCCCEEEEEe----------CCCcEEEEECCC--c----eeeeeeecccccCeeEEEEecCCCE----EEEEc
Q 004270          228 TALAFSSDGQPLLASGA----------SSGVISIWNLEK--R----RLQSVIREAHDNAIISLHFFANEPV----LMSAS  287 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~----------~dg~i~iwd~~~--~----~~~~~~~~~h~~~v~~l~~~~~~~~----l~s~~  287 (764)
                      -.++|+|++..++++|.          .+.++-||.+..  .    +....+.  -....+.++|.+.+..    ++.|.
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeeccc
Confidence            45789998876676653          244566665432  2    2333332  4557889999987764    88888


Q ss_pred             CCCcEEEEEecC--CCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          288 ADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       288 ~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                      .||.|.+|+...  .......+.....|.++|..+.|++. ++.|++|+.||.|.|||+..........           
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----------  156 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----------  156 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence            999999999876  34555677788899999999999994 5599999999999999987533221110           


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (1049)
T KOG0307|consen  157 --------------------------------------------------------------------------------  156 (1049)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEE
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVK  520 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~  520 (764)
                                               .......|.+++|+.. ...|++++.+|.+.|||++..+.+-.+...   ..+..
T Consensus       157 -------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  157 -------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             -------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence                                     0134566788888764 356788889999999999988777766555   34789


Q ss_pred             EEEeecCC-EEEEEeCC---CeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEE
Q 004270          521 IVYHRVNG-LLATVADD---LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA  594 (764)
Q Consensus       521 ~~~s~~~~-~la~~~~d---~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~  594 (764)
                      ++|+|++. .++++++|   -.|.+||++.. ..++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~  291 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE  291 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence            99999874 55555554   37999998754 5678889999999999999966 8999999999999999999999999


Q ss_pred             EeeCCc-eEEEEEcCCCC-eEEEEEeCCCeEEEEeccccc
Q 004270          595 IHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMF  632 (764)
Q Consensus       595 ~~~~~~-v~~l~~sp~g~-~lat~~~d~~~i~lW~~~~~~  632 (764)
                      +..... +..+.|+|... .++.++-|+. |.|+.+...-
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~  330 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTD  330 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCC
Confidence            987554 99999999665 8888999995 9999986554

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.83  E-value=1.3e-21  Score=181.01  Aligned_cols=52  Identities=35%  Similarity=0.411  Sum_probs=50.6

Q ss_pred             CCCCCccCcccCeeEecCCcHHhHhhccChHhhhhcCCCCCCCCCCcCCCcc
Q 004270          682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIW  733 (764)
Q Consensus       682 ~~~~~~~~~~~~~~~ls~~p~~~~~~l~~l~~i~~r~~p~~~~~~p~~~p~~  733 (764)
                      ..+.+++||+++|||||++|++|||+|+|||+||+||||+|||||||+||||
T Consensus        17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFF   68 (237)
T PF04192_consen   17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFF   68 (237)
T ss_pred             cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcc
Confidence            4599999999999999999999999999999999999999999999999999

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=1.8e-17  Score=169.30  Aligned_cols=273  Identities=12%  Similarity=0.143  Sum_probs=182.5

Q ss_pred             EEEEEeCCCcEEEEECCC-ce--eeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          239 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      +.++...++.|.+||+.+ ++  .+..+.  +.+....++++|++++|++++ .++.|.+|+++ ..+........ ...
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~-~~~   79 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAES-PLP   79 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeee-cCC
Confidence            344556789999999964 33  344443  446678899999999887664 57889999987 33322222222 233


Q ss_pred             CCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                      ..+..++++|+++++++++. ++.+.+|++.........                                         
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-----------------------------------------  118 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP-----------------------------------------  118 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------------------------
Confidence            45788999999998888764 778888887432110000                                         


Q ss_pred             EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  473 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h  473 (764)
                                                                            +           ..+         .+
T Consensus       119 ------------------------------------------------------~-----------~~~---------~~  124 (330)
T PRK11028        119 ------------------------------------------------------I-----------QII---------EG  124 (330)
T ss_pred             ------------------------------------------------------e-----------eec---------cC
Confidence                                                                  0           000         11


Q ss_pred             cCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeee-------eEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEc
Q 004270          474 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDV  544 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-------~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~  544 (764)
                      .....+++++|+++++++++ .++.|.+||+.+...+.       ..........++|+|++++++++.. ++.|.+|++
T Consensus       125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            12234567888888775544 56889999987632221       1223355678999999999988876 899999999


Q ss_pred             cC--C--eEEEEeecCC------CCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccc----eEEEEeeCCceEEEEEcCC
Q 004270          545 VA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR----QIDAIHVDVSITALSLSPN  609 (764)
Q Consensus       545 ~~--~--~~~~~~~~h~------~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~sp~  609 (764)
                      +.  +  +.+..+..+.      .....+.|+|||++|+++. .++.|.+|++....    .+..+........++|+||
T Consensus       205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d  284 (330)
T PRK11028        205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS  284 (330)
T ss_pred             eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence            73  3  3344443221      1234689999999999885 47899999996432    3344433344678999999


Q ss_pred             CCeEEEEEeCCCeEEEEeccc
Q 004270          610 MDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       610 g~~lat~~~d~~~i~lW~~~~  630 (764)
                      |++|++++...++|.+|+++.
T Consensus       285 g~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        285 GKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCEEEEEEccCCcEEEEEEcC
Confidence            999999987555799998763

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.6e-19  Score=162.18  Aligned_cols=276  Identities=17%  Similarity=0.266  Sum_probs=193.4

Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-CCCEEEEEeCCCcEEEEECCCceeeeeeec-ccc-cC
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA  270 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~-~~  270 (764)
                      ..+|++..+|.|++||..+++.+..++.+ ...+..+.|..+ +.+.+.+++.||+|++||++.......+.. ++. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            57899999999999999999999999886 778889999875 666899999999999999998866555542 333 35


Q ss_pred             eeEEEEecCCCEEEEEcC----CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270          271 IISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       271 v~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ..+++..-.++.+++|..    +-.|.+||++.....  +-.....|...|++++|+| +.+.|++|+.||.+.+||+..
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            666666656777777753    678999999877532  2233468999999999999 778999999999999999865


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      +.....+.                                                                        
T Consensus       198 d~EeDaL~------------------------------------------------------------------------  205 (376)
T KOG1188|consen  198 DNEEDALL------------------------------------------------------------------------  205 (376)
T ss_pred             CcchhhHH------------------------------------------------------------------------
Confidence            42111110                                                                        


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECC
Q 004270          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~  504 (764)
                                                        ..         ..|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus       206 ----------------------------------~v---------iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  206 ----------------------------------HV---------INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             ----------------------------------Hh---------hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence                                              00         1455566677776655 346666677777777777


Q ss_pred             CCCeeeeEecC-------------cceEEEEEeecCCEEEEEeC-CCeEEEEEcc---C---CeEEEEeec-CCCCeeEE
Q 004270          505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDF  563 (764)
Q Consensus       505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~---~---~~~~~~~~~-h~~~i~~l  563 (764)
                      .+.....+..+             ..+.......+....+.++. -+...++-+.   +   .+.+..+.| |..-|.++
T Consensus       243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i  322 (376)
T KOG1188|consen  243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI  322 (376)
T ss_pred             CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence            66543333221             11111111223445555444 4444444332   2   344566776 67778999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      .|...+.++.||++||.+.+|..+
T Consensus       323 ~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  323 LFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             hhhcccceeeccCCCceEEEEecC
Confidence            999889999999999999999974

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=3.8e-18  Score=153.10  Aligned_cols=289  Identities=17%  Similarity=0.296  Sum_probs=208.9

Q ss_pred             CceEEEEeccCCCCEEEEEEe--eCCCCEEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCC---
Q 004270          213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP---  281 (764)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs--~d~~~~l~sg~----~dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~---  281 (764)
                      ++.+..+..  .-++.++.|+  ++.+..||.|+    ..+.|.|..+  ++++.+..-...|.-+++.+.|.|+..   
T Consensus        35 ~~eiy~Y~a--p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~  112 (364)
T KOG0290|consen   35 RKEIYTYNA--PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY  112 (364)
T ss_pred             cceEEEecC--CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence            445566655  3578899998  55666888887    3456666544  455555444346899999999999863   


Q ss_pred             --EEEEEcCCCcEEEEEecCCCCCceeeEec-----cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeeccccccccc
Q 004270          282 --VLMSASADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS  353 (764)
Q Consensus       282 --~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~  353 (764)
                        +|++++  ..+|+|.+...+....+...+     ..+..++++..|+. +-+++.+++-|-+..+||+.++..     
T Consensus       113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----  185 (364)
T KOG0290|consen  113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----  185 (364)
T ss_pred             cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence              555544  479999887544332222222     34567888888887 778888889999999998865310     


Q ss_pred             chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (764)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (764)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (364)
T KOG0290|consen  186 --------------------------------------------------------------------------------  185 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                                            +.....+        .+|...|..++|...+ +.+++.|.||.||+||++..+.-..+
T Consensus       186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence                                  0001111        3899999999999865 68899999999999999876544333


Q ss_pred             e---c-CcceEEEEEeecC-CEEEEEe-CCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCC-CcEEEEEeCCCcEEEE
Q 004270          513 E---V-GCSLVKIVYHRVN-GLLATVA-DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIW  584 (764)
Q Consensus       513 ~---~-~~~i~~~~~s~~~-~~la~~~-~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~d-g~~l~s~s~dg~i~iw  584 (764)
                      -   . +.+...++|++.. +++|+-. +...|.|.|++.. .++.++++|.+.|+.++|.|. ...|+|++.|..+.+|
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW  315 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW  315 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence            2   2 3678889998844 5666654 4568999999864 578899999999999999995 4689999999999999


Q ss_pred             EcCccc------eEEEEeeCCceEEEEEcC-CCCeEEEEEeCC
Q 004270          585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ  620 (764)
Q Consensus       585 d~~~~~------~~~~~~~~~~v~~l~~sp-~g~~lat~~~d~  620 (764)
                      |+.+--      ++-.+.....|+.+.|++ .+++++.+....
T Consensus       316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence            997532      333445566799999996 678898887654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=6.2e-19  Score=164.72  Aligned_cols=236  Identities=15%  Similarity=0.205  Sum_probs=185.7

Q ss_pred             EEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCccc---ccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270           86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                      .....||+++|..+.|   +.+.|||||+|.+|.||++..+.+.   ..|+..+.+|...+-.+++||... |.|++++.
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~  152 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS  152 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence            3347899999999996   6889999999999999999876653   356788899999999999999886 89999999


Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      |++|.+||+.+|+.+.++. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-..|....-..+-|..+|. +
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            9999999999999999988 9999999999999999999999999999999999999888666455667778888998 6


Q ss_pred             EEEEe---CCCcEEEEECCCceeeeee-ecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          240 LASGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       240 l~sg~---~dg~i~iwd~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      +.+|.   .+..+.+||..+-+.-..+ .....+.|.---|.+|.+.+..+| .|+.||.|.+.........+..+ ...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccC
Confidence            66664   5788999997655322222 112456677777888888776655 59999999886653222222222 233


Q ss_pred             CCCeeEEEecC
Q 004270          315 APPLCIRFYAN  325 (764)
Q Consensus       315 ~~v~~i~~~~~  325 (764)
                      .+-..+.|.|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            45556666663

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.82  E-value=6.6e-17  Score=163.68  Aligned_cols=335  Identities=16%  Similarity=0.169  Sum_probs=209.8

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          152 NKV-IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       152 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +.+ ++-..+|.|.+.|..+.+.+.++......-..+.++|||+++.+++.||.|.++|+.+++.+.++..+  .....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence            344 44566899999999999999999875554456789999999999999999999999999999999875  567899


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc------cccCeeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCC
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD  303 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~  303 (764)
                      ++++||++++++....+.+.++|.++.+.+..+..+      ....+.++..+|..+.++..-.| +.|-+-|+...  .
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~  161 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--K  161 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--S
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--c
Confidence            999999955555567899999999999999888732      23467788889988866655554 55544444332  2


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                      ...... ...........|+|++++++.+. .+..+.++|..+.+....+..+..                         
T Consensus       162 ~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~-------------------------  215 (369)
T PF02239_consen  162 NLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK-------------------------  215 (369)
T ss_dssp             CEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS-------------------------
T ss_pred             ccceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc-------------------------
Confidence            222222 23445667788999998877653 455677777654332211110000                         


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                             .|+.....+                                
T Consensus       216 ---------------------------------------p~~~~~~~~--------------------------------  224 (369)
T PF02239_consen  216 ---------------------------------------PHPGPGANF--------------------------------  224 (369)
T ss_dssp             ---------------------------------------BEETTEEEE--------------------------------
T ss_pred             ---------------------------------------ccccccccc--------------------------------
Confidence                                                   000000000                                


Q ss_pred             cCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE----eCC
Q 004270          463 LDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD  536 (764)
Q Consensus       463 ~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d  536 (764)
                               .|..  .+....  ..+...++.-....+.+||..+.+.++++...+.-..+..||+++++.+.    .+.
T Consensus       225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~  293 (369)
T PF02239_consen  225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA  293 (369)
T ss_dssp             ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred             ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence                     1211  222222  22333333333346668999999999999988666889999999999998    456


Q ss_pred             CeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEe--CCCcEEEEEcCccceEEEEeeC
Q 004270          537 LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~  598 (764)
                      +.|.|+|.++.+.+..+... ..++..+.|++||+++..+.  .++.|.|||..+.+.+..+...
T Consensus       294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~  358 (369)
T PF02239_consen  294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVP  358 (369)
T ss_dssp             T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--
T ss_pred             ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEee
Confidence            89999999999988887633 23589999999999766544  3347999999999999998743

...

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5e-20  Score=195.24  Aligned_cols=275  Identities=19%  Similarity=0.274  Sum_probs=209.7

Q ss_pred             ecCCcEEEEEccC--CcccccceeeEecCCccccEEEEeCCCCC--CEEEEEeCCCcEEEEeCCCC------eEEEEEcC
Q 004270          110 DIDGNMFIWAFKG--IEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG  179 (764)
Q Consensus       110 ~~dg~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~  179 (764)
                      +.+.++-+|.++-  .+....++..+.....| ..++|.+.+..  ..|+.|..||.|.+||...-      ..+.+...
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~  114 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK  114 (1049)
T ss_pred             ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence            4455666665543  33222334455444444 34555555521  25889999999999997652      35667789


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEE-eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       180 h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      |.+.|..+.|++... +||+|+.||.|.|||+..-+.-... .....+.|.+++|...-.++|++++.+|.+.|||++..
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            999999999999765 9999999999999999976655555 23236789999999888889999999999999999998


Q ss_pred             eeeeeeecccc--cCeeEEEEecCCC-EEEEEcCCC---cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270          258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASADN---SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (764)
Q Consensus       258 ~~~~~~~~~h~--~~v~~l~~~~~~~-~l~s~~~d~---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~  330 (764)
                      +.+-.+. -|.  ..+..++|+|+.. .+++++.|.   .|.+||++...   ..++.+.+|...|.++.|++ |.++++
T Consensus       195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCchhhh
Confidence            7777666 333  3478999999864 666666653   58999987765   45666689999999999999 558999


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      +++.|+.+.+|+..+++...++..                                                        
T Consensus       271 SsgkD~~ii~wN~~tgEvl~~~p~--------------------------------------------------------  294 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTGEVLGELPA--------------------------------------------------------  294 (1049)
T ss_pred             cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence            999999999999988776665533                                                        


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECcCCc
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~~g~i~i~~~~~~~  457 (764)
                                  ....+..+.|.|..- .+++++-+|.|.||++.++.
T Consensus       295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                        226677888888664 88899999999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=9.9e-17  Score=163.90  Aligned_cols=281  Identities=11%  Similarity=0.092  Sum_probs=183.0

Q ss_pred             EEEcCCeEEEEEccC-Cc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeeE
Q 004270          198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIIS  273 (764)
Q Consensus       198 ~g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~h~~~v~~  273 (764)
                      +...++.|.+|++.+ ++  .+..+..  .+....++++|+++.+++++..++.|.+|++. +++....-.....+....
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            336689999999974 33  3344432  35678899999999333444568899999986 343321111123345778


Q ss_pred             EEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeeccccccc
Q 004270          274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       274 l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~  351 (764)
                      ++|+|+++++++++. ++.|.+|+++........+... .+...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998888764 8899999997532222223222 2334577889999999886555 568999999865322110


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                      ...                                                            .....  ........++
T Consensus       164 ~~~------------------------------------------------------------~~~~~--~~g~~p~~~~  181 (330)
T PRK11028        164 QEP------------------------------------------------------------AEVTT--VEGAGPRHMV  181 (330)
T ss_pred             cCC------------------------------------------------------------Cceec--CCCCCCceEE
Confidence            000                                                            00000  0114456789


Q ss_pred             EccCCCEEEEEec-CCcEEEEECcC--Ccc--cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC
Q 004270          432 ISACGNFAVLGTA-GGWIERFNLQS--GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (764)
Q Consensus       432 ~s~~g~~l~~g~~-~g~i~i~~~~~--~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~  505 (764)
                      |+|+|+++++... ++.|.+|++..  +..  ...+...+. . ..+......+.++|++++++++. .++.|.+|++..
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA-D-FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC-c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            9999999988877 89999999974  222  122110000 0 01222345689999999998885 478999999865


Q ss_pred             CC----eeeeEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc
Q 004270          506 RD----LKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  545 (764)
Q Consensus       506 ~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~  545 (764)
                      ..    .+...........+.++|+|++|+++.. +++|.+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            43    2233333345678999999999998775 8899999874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.7e-17  Score=142.95  Aligned_cols=268  Identities=17%  Similarity=0.272  Sum_probs=193.2

Q ss_pred             ceEEEEEeCCeEEEEECCe---EEEEec-----------Cc-eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccC
Q 004270           58 KIRALASYRDYTFAAYGNH---IAVVKR-----------AH-QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG  122 (764)
Q Consensus        58 ~I~~~~~~~~~~~~a~g~~---i~vw~~-----------~~-~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~  122 (764)
                      .|.+-+++|.++|++.|+.   |.+...           ++ .+...++|.++|..+.|-..+|++|+ ||.|+=|....
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E   90 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNE   90 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehh
Confidence            4555678899888888765   777752           22 23447899999999999999999998 69999998865


Q ss_pred             Cccc---------ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC
Q 004270          123 IEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL  193 (764)
Q Consensus       123 ~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~  193 (764)
                      .+..         ..|.+.-...-..+..+.+.|..  +-++.++.|+.++-||+++|+..+++++|.+-|.+++--...
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            4431         11111111122345566677887  778888899999999999999999999999999999986666


Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEecc---------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      ..+++|++||++++||.++++.+..+..-         -...|-+++-+.|   .|++|+ ...+.+|+++..++...+.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEEe
Confidence            67999999999999999999988876521         1345677776544   777665 5689999999999888886


Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEE
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLF  341 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~  341 (764)
                        -...+..+.|..+  .+++++..+.|.-|.+...     +...........++..+....- ++-.++....+.++
T Consensus       245 --ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  245 --IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             --cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence              6677888999655  6888888889999976532     2222233333444444443332 33345555555554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=3.9e-18  Score=152.78  Aligned_cols=226  Identities=19%  Similarity=0.266  Sum_probs=168.0

Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-------CcEEEEeCCCC---------eEEE
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY  175 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-------g~i~iwd~~~~---------~~~~  175 (764)
                      |+.|.+-+++.+.-... ...+..+.+.+..++-+|... ..+++...+       -...||.+...         +++.
T Consensus        39 dNqVhll~~d~e~s~l~-skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELL-SKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecCccchhh-hhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            66777777665433111 233444566777777777763 344444331       23678987532         3344


Q ss_pred             EEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce-EEEEec----cCCCCEEEEEEee--CCCCEEEEEeCCC
Q 004270          176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG  247 (764)
Q Consensus       176 ~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~----~~~~~v~~l~fs~--d~~~~l~sg~~dg  247 (764)
                      .+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+..    .+....++-+|+|  ||. .+++ ..|+
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~  193 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDS  193 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCC
Confidence            443 3456899999999999998876 78999999998776 333332    2244678889998  455 4554 4589


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-C
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N  325 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~  325 (764)
                      ++..||+++.+....+..+|...|..+.|+|+.+ +|++++.||.|++||.+...   ..+..+.+|...|.+++|+| -
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence            9999999999999999989999999999999865 78999999999999987654   56788899999999999999 5


Q ss_pred             CCEEEEEeCCCcEEEEEeec
Q 004270          326 GRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~  345 (764)
                      .++++++|.|..+.+|....
T Consensus       271 dqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             ceEEEecCCCceeEEEeccc
Confidence            67889999999999997643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=153.36  Aligned_cols=291  Identities=17%  Similarity=0.224  Sum_probs=201.4

Q ss_pred             ceEEEecccccceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEe-cCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        84 ~~~~~~~~h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      .....+++|.+.|+++.|+ ..+|.++...|.|++|++.+...    ...+. ++..++...-.-|.+   .+.+-+.|+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPND---SLDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCCc---chhhcCCCc
Confidence            3456688999999999995 56899999999999999999876    55565 344555555555544   588889999


Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcC-----CC----CEEEEEEcCC-eEEEEEccCCceEEEEe---ccCCCCEE
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSP-----AL----DVVAVGCSDG-KIHVHNVRYDEELVTFT---HSMRGAVT  228 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-----~~----~~la~g~~dg-~i~iwd~~~~~~~~~~~---~~~~~~v~  228 (764)
                      .+.+|++.-+..+..   |.-.++++.|.+     .+    ..++.-+... .+++-|......+....   ....+.+.
T Consensus        78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            999999976543322   223334444433     21    1122211110 01222221111111111   11135666


Q ss_pred             EEEEeeC--CCCEEEEEeCCCcEEEEECCCcee----------eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       229 ~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      +..+.-+  ...+|++|..+|.+.+||+.++..          ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence            6664322  334677888999999999998732          33333 6899999999988766678888888999999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      ++-..+....-..+.-....+..++.-||++.++++|.|+.+|+|+.++......+.                       
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-----------------------  290 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-----------------------  290 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence            887655444433444445678899999999999999999999999988766554432                       


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                   .|...+.+++|+|+.+.++.++.|++|.+|++
T Consensus       291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                                                         46689999999999999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=7.7e-19  Score=171.99  Aligned_cols=270  Identities=21%  Similarity=0.341  Sum_probs=199.5

Q ss_pred             eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC----CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      ++. .|...|+.+.|.|..+.|++++.||.+++|++..    .......+..+.+|.++|.|+++.+++.++++|+.||+
T Consensus       289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            444 7899999999999999999999999999999832    22345677888999999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |+.|++..........                                                       ..   ....
T Consensus       368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~  389 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS  389 (577)
T ss_pred             eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence            9999875221110000                                                       00   0111


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCC
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG  496 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg  496 (764)
                      ....+|...+..+++|+....|++.+.||+++.|+...... ..+..      ....+.-.++.+-... ...++...-+
T Consensus       390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG  462 (577)
T ss_pred             cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence            22336778999999999999999999999999999987766 33321      1122233444443322 1222222222


Q ss_pred             eEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270          497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      .-.++++.....+..+...        ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus       463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence            2333344444433333321        45778899999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270          569 GKWLLSSGMDGSLRIWDVILARQIDAIHV  597 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~  597 (764)
                      |.+|++++.|+.+++|.+....++.....
T Consensus       543 g~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             CceEEeecCCceeehhhccchheeecccc
Confidence            99999999999999999987666655443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1.8e-19  Score=183.48  Aligned_cols=287  Identities=21%  Similarity=0.271  Sum_probs=225.6

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      +.+..+.+|..+|.|..|...|.++++|+.|..++||...++.++....+| .+.|+.++.+.++. ++++++.|..|++
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEE
Confidence            344556799999999999999999999999999999999999999999876 89999999998877 8999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC--CCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      |.+..+.++..+. +|++.|++++|+|-.    +.+.||++++||.+-..  -.++....  ....-+.++.|...+..+
T Consensus       259 Wrl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~--~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF--TEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc--ccccceeeeecccccccc
Confidence            9999999999999 999999999999965    77889999999987221  11122221  123456677777788889


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      +|++.|+.-+.|.........                                                           
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~-----------------------------------------------------------  352 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRS-----------------------------------------------------------  352 (1113)
T ss_pred             ccccCCcccccchhhHhhhhc-----------------------------------------------------------
Confidence            999999988877653211100                                                           


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-
Q 004270          410 FVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-  487 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-  487 (764)
                                     ..+.-+..+.+ ..+.+++-.+-.+.+|++.+|.......        +|...+..+.++|-+. 
T Consensus       353 ---------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~r  409 (1113)
T KOG0644|consen  353 ---------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPR  409 (1113)
T ss_pred             ---------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcH
Confidence                           00000111111 1345556667788899999998887765        8999999999999664 


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          488 LMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      ...+++.||...|||+-.+.+++.+. .+..+....||+||..++...+-|.++|.....++.
T Consensus       410 i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            45689999999999999888777664 457888899999999999999999999987655543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=8.8e-20  Score=173.93  Aligned_cols=296  Identities=17%  Similarity=0.241  Sum_probs=225.5

Q ss_pred             CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                      ...+..+.|+.+|++++.|+..|.+..+|..+.....++...                                      
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------------------------------  170 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------------------------------  170 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh--------------------------------------
Confidence            345678999999999999999999999999888776665331                                      


Q ss_pred             EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  473 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h  473 (764)
                                                     ..|..+.|-.+.++++++ ....+++||-. |..+..+         ..
T Consensus       171 -------------------------------Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl---------k~  208 (545)
T KOG1272|consen  171 -------------------------------ETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL---------KR  208 (545)
T ss_pred             -------------------------------hhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh---------hh
Confidence                                           456667777777777776 55678888865 3333333         23


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270          474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~  552 (764)
                      ...|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..|+-+|-+..+-+|..+|+|.+|.-...+++..
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence            457888999999999999999999999999999999998776 7888999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc--
Q 004270          553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC--  630 (764)
Q Consensus       553 ~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~--  630 (764)
                      +..|.++|.++++.++|+|+||++.|..++|||+..-..+.++..+.+...++||..| +||.+-.+  .|.+|.-..  
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~  365 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKG  365 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcC
Confidence            9999999999999999999999999999999999998888888777789999998766 44444434  399996421  


Q ss_pred             --------------------ccCCCCCcccCCCCCceeeecCCCccCccCccCCCCC--CCCCccCCCCCCCCCCCCCcc
Q 004270          631 --------------------MFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSS--QPDVHRTDRVPKDSFGLPTFK  688 (764)
Q Consensus       631 --------------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  688 (764)
                                          .|.|......+.....+..+-+|+.++..-+..+...  ...+..|.      +.....+
T Consensus       366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~------EVr~LLe  439 (545)
T KOG1272|consen  366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEK------EVRSLLE  439 (545)
T ss_pred             CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHHhHH------HHHHHHh
Confidence                                1222222223333445566778887766655433322  11111121      1233467


Q ss_pred             CcccCeeEec
Q 004270          689 QQIPDLVTLS  698 (764)
Q Consensus       689 ~~~~~~~~ls  698 (764)
                      .|++++|+|-
T Consensus       440 KippElIsLd  449 (545)
T KOG1272|consen  440 KIPPELISLD  449 (545)
T ss_pred             hCChHhEEec
Confidence            7889999885

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=161.66  Aligned_cols=226  Identities=20%  Similarity=0.287  Sum_probs=162.2

Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcEEEEEecC
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      +|.+.|.++.|+.+|. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.|  +.+++++|..|..|+++|++.
T Consensus        48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            4589999999999999 9999999999999999999999999999999999999999  456999999999999999985


Q ss_pred             CCC------CceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270          300 TDG------DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       300 ~~~------~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      ..+      ..........|...|..++..|++ ..+.+++.||+++-+|++.......-....                
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~----------------  190 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP----------------  190 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----------------
Confidence            321      223445566799999999999988 788999999999999998653322110000                


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERF  451 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~  451 (764)
                                                                ..+.......-...+++++|.. .+|++|+++-..++|
T Consensus       191 ------------------------------------------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY  228 (758)
T KOG1310|consen  191 ------------------------------------------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY  228 (758)
T ss_pred             ------------------------------------------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence                                                      0000000111467788999865 688999999999999


Q ss_pred             ECcCCccc----c--eecCcc----cc-cccccc-----------CcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270          452 NLQSGISR----G--SYLDMS----ER-SNYAHN-----------GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       452 ~~~~~~~~----~--~~~~~~----~~-~~~~h~-----------~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  506 (764)
                      |.+.....    .  ....+.    .+ -..+|.           ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus       229 D~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  229 DRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             hhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            94211110    0  000000    00 001221           12567889999977766665668999988654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=2e-16  Score=147.36  Aligned_cols=175  Identities=19%  Similarity=0.264  Sum_probs=144.5

Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEE
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI  521 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~  521 (764)
                      ..+++++...+..+..+         .....|.++.++.  +.|+.+-.+ .|+|||+++.++++++..-    ..+.++
T Consensus        68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence            35888888877776665         3456788888864  356655554 4999999999999988654    445666


Q ss_pred             EEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCc-EEEEEcCccceEEEEeeC
Q 004270          522 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD  598 (764)
Q Consensus       522 ~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~  598 (764)
                      .+++.+.++|.-+  ..|.|.+||..+.+.+..+..|.+++.+++|+++|.+|||+|+.|+ |||+.+++|+.+..|+-.
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            6666777998754  4689999999999999999999999999999999999999999887 699999999999999744


Q ss_pred             C---ceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270          599 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  633 (764)
Q Consensus       599 ~---~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~  633 (764)
                      .   .|.+++|+||+++|++++..+ +|+++.++....
T Consensus       216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~~  252 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVSN  252 (391)
T ss_pred             ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEeccccc
Confidence            3   399999999999999998887 899999987663

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.3e-18  Score=167.12  Aligned_cols=289  Identities=20%  Similarity=0.336  Sum_probs=221.3

Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecC
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~  299 (764)
                      .|.+.|..+.|...|. .|++|+.|..|.+||...++....+..+|...|....|.|.  ...+++++.||.+++=.+..
T Consensus       140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            4589999999999999 99999999999999999999998888899999999999884  45899999999999876654


Q ss_pred             CCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          300 TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      ... ..-...+..|.++|..++..|+ ...|.+++.|+.+.-+|++.+.....+..                        
T Consensus       219 t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c------------------------  273 (559)
T KOG1334|consen  219 TGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC------------------------  273 (559)
T ss_pred             ccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee------------------------
Confidence            432 2224556689999999999994 46788999999999888765533221110                        


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (764)
                                                                                     -                
T Consensus       274 ---------------------------------------------------------------r----------------  274 (559)
T KOG1334|consen  274 ---------------------------------------------------------------R----------------  274 (559)
T ss_pred             ---------------------------------------------------------------e----------------
Confidence                                                                           0                


Q ss_pred             cceecCccccccccccC---cEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCee------eeE-------ecCcceEEE
Q 004270          459 RGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLK------SRW-------EVGCSLVKI  521 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~------~~~-------~~~~~i~~~  521 (764)
                                  ..+..   ....++.+|.+. .+++++.|..+++||...-...      ..+       .....|+++
T Consensus       275 ------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  275 ------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL  342 (559)
T ss_pred             ------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence                        01111   344566666554 6777788888888876532211      111       223679999


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEccC--C----------eEEEE-eecCCCC--eeEEE-EcCCCcEEEEEeCCCcEEEEE
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVVA--L----------RMVRK-FEGHTDR--ITDFC-FSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~~--~----------~~~~~-~~~h~~~--i~~l~-~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +|+.++.-|.++..|-.|+++.-.-  |          ..+.. ++||...  |..+- |-|...|+++||.-|.|.||+
T Consensus       343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            9998888888888899999995332  2          22333 8899754  55665 467889999999999999999


Q ss_pred             cCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          586 VILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       586 ~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      -.+++.+..+.+... |+||.=+|--..||+++-|.. |+||.-
T Consensus       423 K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWTP  465 (559)
T KOG1334|consen  423 KKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWTP  465 (559)
T ss_pred             cchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeecC
Confidence            999999988877655 999999999999999999995 999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.3e-16  Score=138.03  Aligned_cols=285  Identities=15%  Similarity=0.165  Sum_probs=204.8

Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEEecCCC------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      .|.+-+++|.+++|+.|..+|.|.+..+....      .....+....+|.++++.++|+  ..+|++++ ||.++-|.-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            46667889999999999999999999876431      1123344457999999999998  34677776 599999976


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      +.......                                                 .-++|.+.....      .....
T Consensus        89 ~E~~es~~-------------------------------------------------~K~lwe~~~P~~------~~~~e  113 (325)
T KOG0649|consen   89 NEEEESLA-------------------------------------------------TKRLWEVKIPMQ------VDAVE  113 (325)
T ss_pred             hhhhhhcc-------------------------------------------------chhhhhhcCccc------cCccc
Confidence            54332100                                                 011122111100      00011


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      -..|.++.+.|..+-++.++.|+.++-||+++|+....+.        +|.+.|.+++--.....+++|+.||++|+||.
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT  185 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence            2578899999999988888899999999999999999986        99999999998666667999999999999999


Q ss_pred             CCCCeeeeEecC-----------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEE
Q 004270          504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (764)
Q Consensus       504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l  572 (764)
                      ++++.+..+...           ..|.+  ..-+...+++|. ...+.+|.++..++...|. -..++..+.|-.|  .+
T Consensus       186 kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v  259 (325)
T KOG0649|consen  186 KTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV  259 (325)
T ss_pred             cccceeEEeccccChhhcCcccCceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence            999998887643           22333  334466776664 5689999999998888776 4567888889654  67


Q ss_pred             EEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ++++..+.|.-|.+. |.+-..+...++ +++.+|+..--.++++....+.+.+..
T Consensus       260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            788888899999875 666666665554 777777765545555444433466554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.7e-18  Score=166.56  Aligned_cols=264  Identities=20%  Similarity=0.333  Sum_probs=191.4

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC--------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      .++..|...|+.++|.|....|++++.||.+.+|+++.        -+++.+|..| .++|.|+++.+++. .+++|+-|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence            36778899999999999999999999999999999932        2467788776 99999999999999 89999999


Q ss_pred             CcEEEEECCCc----------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270          247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (764)
Q Consensus       247 g~i~iwd~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (764)
                      |+|+.|++...          .....+. ||.+.|+.+++++....|++++.||+++.|+.....  +...... ...+-
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~~~f~~~-~e~g~  441 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--PCTFGEP-KEHGY  441 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--ccccCCc-cccCC
Confidence            99999965421          2334455 999999999999999999999999999999764432  1112111 22233


Q ss_pred             CeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270          317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (764)
Q Consensus       317 v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (764)
                      ..++.+-... .+.++   +..++.+++........+..                                         
T Consensus       442 Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~-----------------------------------------  477 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLI-----------------------------------------  477 (577)
T ss_pred             cceEeeccchhHhhhh---hcccccccchhhhhhhheee-----------------------------------------
Confidence            4455554322 12222   22333333322211111000                                         


Q ss_pred             eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                               +        .....+.......+..+...|.+.+.+.+..++.|+++|..++..+....        .|..
T Consensus       478 ---------~--------~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~  532 (577)
T KOG0642|consen  478 ---------F--------ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKD  532 (577)
T ss_pred             ---------c--------cccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccc
Confidence                     0        00000001112456777888899999999999999999999999998875        8999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  513 (764)
                      .++++++.|+|-+|++++.|+.+++|.+....+.....
T Consensus       533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             eecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence            99999999999999999999999999998776655443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=3.9e-17  Score=146.48  Aligned_cols=251  Identities=16%  Similarity=0.228  Sum_probs=190.7

Q ss_pred             ecccccceEEEEE---eCCEEEEEecC-------CcEEEEEccCCccc-----ccceeeEe-cCCccccEEEEeCCCCCC
Q 004270           89 WSRHSAKVNLLLL---FGEHILSIDID-------GNMFIWAFKGIEEN-----LAPVGHVK-LDDKFTPTCIMHPDTYLN  152 (764)
Q Consensus        89 ~~~h~~~v~~l~~---~g~~l~s~~~d-------g~v~vWd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~p~~~~~  152 (764)
                      +.-|.+.|..++.   +...|+++-.+       -.+.||.+......     ...+..+. .+.+.+.++.|.|++  .
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns--~  136 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS--D  136 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC--C
Confidence            6778899999883   66777776542       13789998764432     12233333 223455677799988  7


Q ss_pred             EEEEEeCCCcEEEEeCCCCeE-EEEEc-----CCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCC
Q 004270          153 KVIVGSQEGSLQLWNISTKKK-LYEFK-----GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR  224 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~  224 (764)
                      ++++-. +..|.+|++..+.. +..+.     +|....++-+|+|  +++.+++.+ |+++..||+++.++...+...|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence            888775 77899999987765 44332     3566778889998  677787754 68999999999999999988888


Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCCCC
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      ..|..+.|.|+.+++|++|+.||.|++||.+.-+ ++..+. +|...|.++.|+|. .++++++|.|..|.+|....-..
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            8999999999999999999999999999998764 556666 99999999999995 45889999999999995432210


Q ss_pred             -------------------------CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270          303 -------------------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       303 -------------------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~  344 (764)
                                               .-..+..+..|...|.+++|+. |.-.+++-+.||.+.|=.+.
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                     0112345677999999999998 66677888999998886653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=4.6e-16  Score=157.54  Aligned_cols=327  Identities=13%  Similarity=0.087  Sum_probs=208.2

Q ss_pred             EEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Q 004270          107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS  186 (764)
Q Consensus       107 ~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~  186 (764)
                      ++-..+|.|.|.|..+.+.    +..+......-....++|++  +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus        10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~   82 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG   82 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred             EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence            4555689999999999888    77887655554556789999  8899999999999999999999999987 455688


Q ss_pred             EEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEecc------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270          187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (764)
Q Consensus       187 ~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~  259 (764)
                      +++|+||++++++. ..+.+.++|.++.+.+..+...      ....+.++..+|.+..++++--..+.|.+.|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999875 5799999999999999887643      1346788888888874444555568899999877654


Q ss_pred             eeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEEeC
Q 004270          260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                      +...............|.|++++++.+ ..++.|-++|....    ......    ..|..+...+ .+|....+-..+.
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~  237 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG  237 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence            433222345567789999999987664 55778888876544    222221    1233333332 2332211111111


Q ss_pred             CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (764)
Q Consensus       335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (764)
                      .+.                                                                             
T Consensus       238 ~~~-----------------------------------------------------------------------------  240 (369)
T PF02239_consen  238 LGY-----------------------------------------------------------------------------  240 (369)
T ss_dssp             SSS-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE--
Q 004270          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--  492 (764)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--  492 (764)
                                             ..+..-....+.+|+..+.+....+.        ...+. ..+..+|+++++...  
T Consensus       241 -----------------------~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~  288 (369)
T PF02239_consen  241 -----------------------FAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF  288 (369)
T ss_dssp             -----------------------SEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred             -----------------------eecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence                                   11111111233355556666666553        33344 778889999999988  


Q ss_pred             --eCCCeEEEEECCCCCeeeeEecCc--ceEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEee
Q 004270          493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       493 --~~dg~v~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~  554 (764)
                        ...+.|.++|.++.+....+....  .+..+.|+++|+.+.++..+  +.|.|||..+.+.+.++.
T Consensus       289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence              455899999999998887776554  49999999999977666543  479999999999998887

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=8.5e-17  Score=166.74  Aligned_cols=284  Identities=14%  Similarity=0.179  Sum_probs=202.7

Q ss_pred             CcEEEEECCCc-eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC--ceeeEeccCCCCCCeeEEE
Q 004270          247 GVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       247 g~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~  322 (764)
                      +.+.+|+++.. .+...+  .-...|+++.|+|.. .+++.|..+|.|.+||+......  ...-.....|..++..+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999887 333333  367899999999955 57778888999999999877552  2233344578999999999


Q ss_pred             ecCC--CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       323 ~~~~--~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      ..+.  .-+++++.||.|..|+++.-....+........                                         
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-----------------------------------------  338 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-----------------------------------------  338 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence            8744  449999999999999876544322211100000                                         


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (764)
                                    + ..........++++.|.+. -+.+++|+..|.|..-+....................|.+.|.+
T Consensus       339 --------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~  403 (555)
T KOG1587|consen  339 --------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA  403 (555)
T ss_pred             --------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence                          0 0000112356788888774 47799999999998855544333331111111123478999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEEccCC--eEEEEee
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFE  554 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~--~~~~~~~  554 (764)
                      +.++|-+..++..+.|.++++|... ...++..+..+ ..+++++|||-. ..++++..||.+.+||+...  +++.+..
T Consensus       404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~  483 (555)
T KOG1587|consen  404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK  483 (555)
T ss_pred             eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence            9999988766666669999999988 66666666655 559999999965 47778888999999998654  4455555


Q ss_pred             cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      -+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus       484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5566778888999999999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=5.3e-17  Score=170.00  Aligned_cols=290  Identities=18%  Similarity=0.313  Sum_probs=208.4

Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCC
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      +...+.|+|-.. .+++++..-.|++||.+.++.+..+..+  ....|+.+.+..+  ..++++++.||.||||+--...
T Consensus      1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            456788888877 7888887789999999999988777632  2457899998763  4589999999999999633222


Q ss_pred             -CCceeeEeccCC-------CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          302 -GDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       302 -~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                       +.++++....+-       .+.-.-+.|.....+|+++|.-+.|++||.........+..                   
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence             444555433222       11223455666556777777788899999876655444322                   


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEE
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN  452 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~  452 (764)
                                                                      +....++++.-+. .|+.+++|..||.|++||
T Consensus      1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred             ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence                                                            1224555554443 469999999999999999


Q ss_pred             CcCCcccceecCccccccccccCc--EEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeE--e----cCcceEEEEE
Q 004270          453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW--E----VGCSLVKIVY  523 (764)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~--~----~~~~i~~~~~  523 (764)
                      .+.........     ..+.|...  |..+.+.+.|- .|++|+.||.|++||++.......+  .    .++..+++..
T Consensus      1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred             cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence            87654421111     11477777  99999988764 5999999999999999874222222  1    2345999999


Q ss_pred             eecCCEEEEEeCCCeEEEEEccCCeEEEEeec-------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                      +++...+|+|+. +.|.||++... .+..++.       ..+.+.+++|+|.--+||.|+.|.+|.||..+.++
T Consensus      1313 H~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999998 99999998743 3333332       23568999999998899999999999999877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=3.9e-16  Score=151.76  Aligned_cols=453  Identities=13%  Similarity=0.198  Sum_probs=270.9

Q ss_pred             CCCcceEEEEEeCC-eEEEEECCe-EEEEec-Cc---eEEEecccccceEEEEE---------eCCEEEEEecCCcEEEE
Q 004270           54 QLPKKIRALASYRD-YTFAAYGNH-IAVVKR-AH---QVATWSRHSAKVNLLLL---------FGEHILSIDIDGNMFIW  118 (764)
Q Consensus        54 ~~~~~I~~~~~~~~-~~~~a~g~~-i~vw~~-~~---~~~~~~~h~~~v~~l~~---------~g~~l~s~~~dg~v~vW  118 (764)
                      .|...+.|+.++.+ ..+.++.++ +.+|.. .+   ++..+.. ..--+.+.+         ..+.++.++.||.+.+-
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            45566677777665 445555444 666642 22   1221111 111111111         23568888889998887


Q ss_pred             EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 004270          119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAV  198 (764)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~  198 (764)
                      +-...-     -+.++.|.+.+.+..++|+|  .-|++++.||.|++|. ++|-+..++-....+|.|++|.|+.+-++.
T Consensus        91 ~k~~rV-----E~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   91 NKSARV-----ERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             cccchh-----hhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence            754432     25666788888888899999  7899999999999998 677776667667889999999999877665


Q ss_pred             EEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec
Q 004270          199 GCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA  278 (764)
Q Consensus       199 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~  278 (764)
                      +.. +.+.|=.+.....+...+.| .+-|.++.|++.+. ++++|+.|-..++||. .|..+..-. .|+.+|++++|.|
T Consensus       163 c~g-~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~-lI~sgGED~kfKvWD~-~G~~Lf~S~-~~ey~ITSva~np  237 (737)
T KOG1524|consen  163 CQG-GHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSN-IIASGGEDFRFKIWDA-QGANLFTSA-AEEYAITSVAFNP  237 (737)
T ss_pred             ecC-CeEEEeecccccceeEEecc-CcEEEEeecCcccc-ceeecCCceeEEeecc-cCcccccCC-hhccceeeeeecc
Confidence            543 67888888877777777776 89999999999998 9999999999999995 456666655 7999999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc-cccchhh
Q 004270          279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHV  357 (764)
Q Consensus       279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~  357 (764)
                      + ..++.++. +++|               ......+.|..++|++||..++.|...|.+.+=-+...+... .+.....
T Consensus       238 d-~~~~v~S~-nt~R---------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~  300 (737)
T KOG1524|consen  238 E-KDYLLWSY-NTAR---------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSK  300 (737)
T ss_pred             c-cceeeeee-eeee---------------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEee
Confidence            9 45555443 3343               223456789999999999999999988877654333222111 1100000


Q ss_pred             hHHH---hhc-cchhhhhccCc--------------eeEeeecccccccccceeEee------------------eCCce
Q 004270          358 AKRA---RKL-KMKEEELKLKP--------------VIAFDCAEIRERDWCNVVTCH------------------MDTAQ  401 (764)
Q Consensus       358 ~~~~---~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~  401 (764)
                      .++.   +.. ....+.+.++.              .+...+.-.....|+.-+...                  .+..+
T Consensus       301 ~r~~I~vrdV~~~v~d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsS  380 (737)
T KOG1524|consen  301 SRKSITVRDVATGVQDILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSS  380 (737)
T ss_pred             ccceEEeehhhhhHHHHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcE
Confidence            0000   000 00001111111              111122222233444332222                  22333


Q ss_pred             EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEEC-cCCcccceecCccccccccccCcEE
Q 004270          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                      +.++.+.....-...++..  .......-.+|-....|+.-.  ....+++||. .+|+....-.      ...|...|.
T Consensus       381 i~lytyegR~~~np~~Pg~--~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk------~L~hk~~Iv  452 (737)
T KOG1524|consen  381 IWLYTYEGRLHLNPRYPGS--QIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK------SLRHKQQIV  452 (737)
T ss_pred             EEEEEecCceecCCCCCCc--ccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc------ccchhhhHH
Confidence            4444443322211111100  001111112222223444432  2346788888 5555443211      125677777


Q ss_pred             EEEECC----CCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          479 GVACDS----TNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       479 ~l~~~~----~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      .++.+.    +.+.++--...+.+.|-..++ |+....++.+..+..++|+..- -+.+|-.|+.+.||-...
T Consensus       453 eIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndtt-NiLcglqDt~fsVWy~pn  524 (737)
T KOG1524|consen  453 EIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTT-NILCGLQDTCFSVWYYPN  524 (737)
T ss_pred             HhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccc-ceeeeeccceEEEEEcCC
Confidence            777754    446677677777777766553 2334445566778888888644 456788899999997654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.7e-18  Score=176.51  Aligned_cols=277  Identities=18%  Similarity=0.303  Sum_probs=201.1

Q ss_pred             CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      |...|+|+.|...|. ++++|+.|..++||..+++.++...+ ||.+.|+.++.+.+..++++++.|..|++|.+...  
T Consensus       189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--  264 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--  264 (1113)
T ss_pred             hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence            477899999999998 89999999999999999999999999 99999999999999999999999999999987765  


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                        .++..+.||.+.|++++|+|-.    +.+.||++++||.+-......  .                            
T Consensus       265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~--p----------------------------  308 (1113)
T KOG0644|consen  265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV--P----------------------------  308 (1113)
T ss_pred             --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC--C----------------------------
Confidence              5677888999999999999954    678899999999751100000  0                            


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                      .  ........-+.++.+...+..+++|+.++.-..|.+         
T Consensus       309 --------------------------------r--p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~---------  345 (1113)
T KOG0644|consen  309 --------------------------------R--PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF---------  345 (1113)
T ss_pred             --------------------------------C--CCCcccccceeeeeccccccccccccCCcccccchh---------
Confidence                                            0  000000122333333334444444444433222211         


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  542 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~  542 (764)
                                     ..+++....-.+++.+.|                              -+.+.+++-.+..+.+|
T Consensus       346 ---------------~~l~~~~~~lif~t~ssd------------------------------~~~~~~~ar~~~~~~vw  380 (1113)
T KOG0644|consen  346 ---------------EQLAWRSNLLIFVTRSSD------------------------------LSSIVVTARNDHRLCVW  380 (1113)
T ss_pred             ---------------hHhhhhccceEEEecccc------------------------------ccccceeeeeeeEeeee
Confidence                           111222121112222111                              01345555667788999


Q ss_pred             EccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEe-eCCceEEEEEcCCCCeEEEEEeCC
Q 004270          543 DVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       543 d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      ++.+|.++..+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+. +|..+....||+||..++....-+
T Consensus       381 nl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg  460 (1113)
T KOG0644|consen  381 NLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG  460 (1113)
T ss_pred             ecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence            999999999999999999999999955 455589999999999999998887654 566689999999999998776666


Q ss_pred             CeEEEEec
Q 004270          621 NGVYLWVN  628 (764)
Q Consensus       621 ~~i~lW~~  628 (764)
                       .++|...
T Consensus       461 -ql~i~g~  467 (1113)
T KOG0644|consen  461 -QLYILGT  467 (1113)
T ss_pred             -ceEEecc
Confidence             4887754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=4.9e-15  Score=138.17  Aligned_cols=269  Identities=14%  Similarity=0.240  Sum_probs=194.9

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce--EEEecccccceEEEE
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNLLL  100 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~v~~l~  100 (764)
                      +..+++.+.-.-.++|+.......+-.......|--+-|+...+-++.-.+   +++.+..+.  +..+. -..+|.++.
T Consensus        16 d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~Vr   94 (391)
T KOG2110|consen   16 DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVR   94 (391)
T ss_pred             ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEE
Confidence            334444444455678888775553333334556777778888776666433   777765443  33322 235788999


Q ss_pred             EeCCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEE--EeCCCcEEEEeCCCCeEEEEE
Q 004270          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIV--GSQEGSLQLWNISTKKKLYEF  177 (764)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~  177 (764)
                      .+-++|+++-++. |.|+|+.+.++    +.++... ......++++|+....+++.  ....|.|.+||..+.+.+..+
T Consensus        95 mNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I  169 (391)
T KOG2110|consen   95 MNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI  169 (391)
T ss_pred             EccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence            9999999998655 99999999988    6666554 44555778888775456665  334689999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCe-EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                      ..|.+++-|++|+++|.+||+++..|+ |||+.+.+|+.+.+|+.+. ...|.+++|+|+++ +|++.+..++|.+|.++
T Consensus       170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLE  248 (391)
T ss_pred             EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEec
Confidence            999999999999999999999999987 6899999999999998653 24689999999999 88888899999999886


Q ss_pred             Cceee-------------------------------------eeeecccccCe-eEEEEe--cCCCEEEEEcCCCcEEEE
Q 004270          256 KRRLQ-------------------------------------SVIREAHDNAI-ISLHFF--ANEPVLMSASADNSIKMW  295 (764)
Q Consensus       256 ~~~~~-------------------------------------~~~~~~h~~~v-~~l~~~--~~~~~l~s~~~d~~i~vw  295 (764)
                      .....                                     ...+ ...+.. ..+.+.  +..+.+..++.||.+..|
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~-l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y  327 (391)
T KOG2110|consen  249 KVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAK-LPESGRKNICSLSSIQKIPRVLVASYDGHLYSY  327 (391)
T ss_pred             ccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEE-ccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence            43100                                     0000 001111 222333  467789999999999999


Q ss_pred             EecCCCC
Q 004270          296 IFDTTDG  302 (764)
Q Consensus       296 ~~~~~~~  302 (764)
                      .++..++
T Consensus       328 ~l~~~~g  334 (391)
T KOG2110|consen  328 RLPPKEG  334 (391)
T ss_pred             EcCCCCC
Confidence            9887643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.3e-16  Score=167.13  Aligned_cols=292  Identities=16%  Similarity=0.231  Sum_probs=207.4

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCC
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYD  213 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~  213 (764)
                      ....+.|||-.  ..++++...-.|++||.+.++.+..|..+   ...|+.+.+-.  |..++++|+.||.|+||+--..
T Consensus      1066 ~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            44566788877  67888887778999999999998888654   46788888765  3468999999999999974322


Q ss_pred             -----ceEEEEec------cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCC
Q 004270          214 -----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEP  281 (764)
Q Consensus       214 -----~~~~~~~~------~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~  281 (764)
                           +.+..+..      ...+.-.-+.|..... +|++++.-..|+|||.........+..+....|+++.-.. .|+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence                 22222211      0011113456666655 4444555789999999999888888867777888886543 468


Q ss_pred             EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC--CeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVA  358 (764)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  358 (764)
                      .++.|..||+|++||.+..... ..+...+.|...  |..+.+-+.|- .|++|+.||.|++||++.......+..    
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---- 1297 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---- 1297 (1387)
T ss_pred             eEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee----
Confidence            9999999999999998876543 345555678877  99999988554 599999999999999875311100000    


Q ss_pred             HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  438 (764)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  438 (764)
                                                                                                      
T Consensus      1298 -------------------------------------------------------------------------------- 1297 (1387)
T KOG1517|consen 1298 -------------------------------------------------------------------------------- 1297 (1387)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec----
Q 004270          439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----  514 (764)
Q Consensus       439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----  514 (764)
                               +.-                    ....+..+++.+++....+++|+. +.|+||++...++......    
T Consensus      1298 ---------v~~--------------------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1298 ---------VAH--------------------WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred             ---------eec--------------------cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccc
Confidence                     000                    011224788888888888888888 8899998765433221111    


Q ss_pred             ---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270          515 ---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (764)
Q Consensus       515 ---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~  548 (764)
                         ...+.|++|+|..-++|+|+.|..|.||.....+
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence               1667999999999999999999999999876543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.3e-16  Score=148.01  Aligned_cols=193  Identities=21%  Similarity=0.266  Sum_probs=155.4

Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      ..++++.+|..+++|..||.+++|+..+........        .|.+.|.++.|+|||+.|++.+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999988777766664        899999999999999999999999 99999999997


Q ss_pred             eeeeEec---CcceEEEEEeecC-----CEEEEEeCCCeEEEEEccCCeE-----EEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~d~~i~v~d~~~~~~-----~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      .+.....   +.....+.|+.|+     .+++.....+.|+.||+...+-     .++...-...|++++.|+||++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            7666553   2567788888887     3334444567788877654322     1111122346999999999999999


Q ss_pred             EeCCCcEEEEEcCccceEEEEee-CC-ceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~~-~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      |+.||.|.|++..+-+.+..++. |. -|+.+.|+||.+++++.+.+. ...+-.+..
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEee
Confidence            99999999999998888877653 44 399999999999999988887 477766543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.4e-15  Score=151.66  Aligned_cols=432  Identities=14%  Similarity=0.145  Sum_probs=269.6

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCC------------eEEEEECCe---EEEEecCc--eEE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGNH---IAVVKRAH--QVA   87 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~------------~~~~a~g~~---i~vw~~~~--~~~   87 (764)
                      +..-|+.++.+..|.+-|..+.+++....-|+..|+.+.+.|-            ...+|+++.   |.+||...  .+.
T Consensus        24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            3456777777899999999999999999889999999998753            345666543   99999643  344


Q ss_pred             EecccccceEEEEE-----eC-CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           88 TWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        88 ~~~~h~~~v~~l~~-----~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      .+..|..+|..+.+     +. ..|+.......+.+|+..+|+.    +-.............+.|-.. +.+.+-+..|
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g  178 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKG  178 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccCc
Confidence            48899999999986     23 6788888899999999999988    333333333333334555443 3444445556


Q ss_pred             cEEEEeCC-------CCeEEEEEcCCCC------------Ce-------------EEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          162 SLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       162 ~i~iwd~~-------~~~~~~~~~~h~~------------~i-------------~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      .+.+-+.-       .|+..+.-..|.+            .+             -.++|+|.-+-+........+.++|
T Consensus       179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d  258 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD  258 (1062)
T ss_pred             eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence            66665432       2344444444322            00             1246788766556566678899999


Q ss_pred             ccCCceEEEEeccCCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEECCCc----------------eeeeeeecccccCee
Q 004270          210 VRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR----------------RLQSVIREAHDNAII  272 (764)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd~~~~----------------~~~~~~~~~h~~~v~  272 (764)
                      ++-...+...... .+.+.-+.+.|+++ ..|++.-.||.+.+|-.+..                +....+..-.+-.+.
T Consensus       259 le~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~  337 (1062)
T KOG1912|consen  259 LEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV  337 (1062)
T ss_pred             chhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence            9998888888766 56677788888764 37888889999999976542                111111111112222


Q ss_pred             EEEEecC-CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-----CCEEEEEeCCCcEEEEEeecc
Q 004270          273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       273 ~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      .....|. ...++..-.+|.+.+|.+..+...   .....+...-+..+.|+.+     ...|..-+.||.     ...+
T Consensus       338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~---~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----h~sG  409 (1062)
T KOG1912|consen  338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIH---LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS-----HSSG  409 (1062)
T ss_pred             eeecCCCChhhhhhhhhcchhHHHhhhcCCcC---cccccccccccccccccCceeehhhccccchhhcCC-----CCCC
Confidence            3333444 233333445677888977653210   1111111122222222211     112333333430     0000


Q ss_pred             cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (764)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  426 (764)
                      ....+.                     .|.                                                ..
T Consensus       410 s~~~~~---------------------~p~------------------------------------------------p~  420 (1062)
T KOG1912|consen  410 STCVRM---------------------RPM------------------------------------------------PE  420 (1062)
T ss_pred             ceeeec---------------------ccC------------------------------------------------cc
Confidence            000000                     000                                                00


Q ss_pred             eEEEEEccCC-------CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-------
Q 004270          427 VKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-------  492 (764)
Q Consensus       427 v~~~~~s~~g-------~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-------  492 (764)
                      .+-..-.|.|       ..+++|++.|+|.++|+.++.....+.        .|...|.++.|-...+++-.+       
T Consensus       421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~~  492 (1062)
T KOG1912|consen  421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNSA  492 (1062)
T ss_pred             cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeecccccc
Confidence            0001111111       368999999999999999999988886        899999999998766543222       


Q ss_pred             --eCCCeEEEEECCCCCeeeeE--e--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270          493 --GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       493 --~~dg~v~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                        +.-+.+.+-|+++|..+..-  +  ...+|..+..|..++||+....+.-+.+||+++.
T Consensus       493 sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  493 SGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             ccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence              22245778899988544332  2  2389999999999999999999999999998654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=2.5e-16  Score=147.44  Aligned_cols=160  Identities=15%  Similarity=0.233  Sum_probs=134.4

Q ss_pred             ccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      .+|...|.-++|+|.. +.|++++.|.+|.+|++.+++.+.++.+...|.++.|+.||.++++.+.|..|||||.+++++
T Consensus       128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~  207 (472)
T KOG0303|consen  128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV  207 (472)
T ss_pred             eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence            3899999999999954 688999999999999999999999999889999999999999999999999999999999999


Q ss_pred             EEEeecCCCC-eeEEEEcCCCcEEEEEe---CCCcEEEEEcCccc---eEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe
Q 004270          550 VRKFEGHTDR-ITDFCFSEDGKWLLSSG---MDGSLRIWDVILAR---QIDAIHVDVSITALSLSPNMDVLATAHVDQNG  622 (764)
Q Consensus       550 ~~~~~~h~~~-i~~l~~s~dg~~l~s~s---~dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~  622 (764)
                      +.+-.+|.+. -..+.|-.+|..+-||-   .+..+-+||-.+-+   ....+...+.|.---|.+|...+..++.....
T Consensus       208 v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  208 VSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             eeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence            9998888753 34566888888444432   57889999876532   34555666778888899999999988876667


Q ss_pred             EEEEeccc
Q 004270          623 VYLWVNRC  630 (764)
Q Consensus       623 i~lW~~~~  630 (764)
                      |+-|.+..
T Consensus       288 IRYyEit~  295 (472)
T KOG0303|consen  288 IRYFEITN  295 (472)
T ss_pred             eEEEEecC
Confidence            99988743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=5e-16  Score=161.11  Aligned_cols=274  Identities=18%  Similarity=0.202  Sum_probs=197.0

Q ss_pred             CeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee-----eeeeecccccCeeEEEE
Q 004270          203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF  276 (764)
Q Consensus       203 g~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~~h~~~v~~l~~  276 (764)
                      +.+.+|+++.. ..-..+..  ...|+++.|+|...++++.|..+|.|.+||++.+..     +......|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999876 33333333  688999999999888999999999999999988754     23333578999999999


Q ss_pred             ecCCCE--EEEEcCCCcEEEEEecCCCCCce--eeEec------cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270          277 FANEPV--LMSASADNSIKMWIFDTTDGDPR--LLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       277 ~~~~~~--l~s~~~d~~i~vw~~~~~~~~~~--~~~~~------~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ..+..-  +++++.||.|..|+++.-.....  +....      ..-...+++++|.+ +-..++.|+.+|.|..-+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            876554  99999999999998775432111  11111      12235788999998 677899999999776532211


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      .+...+..                                                            .........|.+
T Consensus       380 ~~~~~~~~------------------------------------------------------------~~~~~~~~~h~g  399 (555)
T KOG1587|consen  380 YTPAPEVS------------------------------------------------------------YKGHSTFITHIG  399 (555)
T ss_pred             Cccccccc------------------------------------------------------------ccccccccccCc
Confidence            11000000                                                            011112234568


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEEC
Q 004270          426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF  503 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~  503 (764)
                      .+.++.++|-+..++..+.|.++++|... ...++..+.        .+...|++++|||.. ..++++..||.+.+||+
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence            99999999998777766669999999988 555555553        677779999999976 46677778999999998


Q ss_pred             CCCC--eeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          504 KGRD--LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       504 ~~~~--~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      ....  +....... ...+.+.++++|+.|++|...|.+++|++..
T Consensus       472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            7543  33333333 5567778888899999999999999999863

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.8e-17  Score=159.29  Aligned_cols=320  Identities=14%  Similarity=0.168  Sum_probs=236.9

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVIS  250 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~  250 (764)
                      .+...+..|.+.|..+.|...|..|++|+.|..|.+||...++....+..+|...|....|.|.. ..-+++++.||.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            34466889999999999999999999999999999999999999999999989999988898853 23688999999999


Q ss_pred             EEECCCc-eee-eeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC---CCeeEEEec
Q 004270          251 IWNLEKR-RLQ-SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA  324 (764)
Q Consensus       251 iwd~~~~-~~~-~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~  324 (764)
                      +=.+... ... ......|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+..   ....++..|
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence            8876433 222 122237999999999999775 68899999999988887664433333 3334444   567888888


Q ss_pred             -CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       325 -~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                       +...+++++.|..+++||.+.-.....-.                     ++..+                        
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---------------------~~~~f------------------------  326 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNG---------------------VLDKF------------------------  326 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccc---------------------hhhhc------------------------
Confidence             45589999999999999976432210000                     00000                        


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--eec---CccccccccccC--c
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYL---DMSERSNYAHNG--E  476 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--~~~---~~~~~~~~~h~~--~  476 (764)
                              ...+...   .....|++++++.++.-+++.+.|-.|++|+-.-+.-..  ...   .......++|..  .
T Consensus       327 --------~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T  395 (559)
T KOG1334|consen  327 --------CPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT  395 (559)
T ss_pred             --------CCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc
Confidence                    0011111   334789999999999999999999999999543332210  000   001112347754  4


Q ss_pred             EEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270          477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (764)
Q Consensus       477 v~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~  548 (764)
                      |.++-| -|...++++|+.-|.|.||+-++++.+..++.. .-|.|+.-+|--..||+.+-|..|+||.-.+.+
T Consensus       396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            677765 567899999999999999999999999888766 578999999999999999999999999765443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.1e-16  Score=146.42  Aligned_cols=308  Identities=14%  Similarity=0.128  Sum_probs=219.1

Q ss_pred             eEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC------CCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      .+..|.+.+..+.|+.++  +.|++|+.|..+++|++.      +.+++.... .|.+.|.|++|.....+|.+|..+++
T Consensus        51 D~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            344577788888899988  899999999999999985      346666554 45689999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeee-cccccCeeEEEEecCCC
Q 004270          205 IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIR-EAHDNAIISLHFFANEP  281 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~h~~~v~~l~~~~~~~  281 (764)
                      |.+.|+++.+.+..+.... .+.|+.+..+|... .|++.+.++.|.+||.+... ....+. .........+.|+|..+
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999999988887542 46899999999876 89999999999999998764 222221 12345678899999776


Q ss_pred             -EEEEEcCCCcEEEEEecCCCCCceee---EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270          282 -VLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       282 -~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                       +|++++..+-+.+||...........   ..+......-.++.|+|+|+.|++.-....-.+||+...++....     
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k-----  282 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK-----  282 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe-----
Confidence             67778888889999987653211100   111111223367889999999988766666667777553321110     


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (764)
                                           ++..+                         ++          -.....+.+++|-.+-.
T Consensus       283 ---------------------~D~N~-------------------------~G----------Y~N~~T~KS~~F~~D~~  306 (609)
T KOG4227|consen  283 ---------------------SDHNP-------------------------NG----------YCNIKTIKSMTFIDDYT  306 (609)
T ss_pred             ---------------------ccCCC-------------------------Cc----------ceeeeeeeeeeeeccee
Confidence                                 00000                         00          00114566777765544


Q ss_pred             EEEEEecCCcEEEEECcCCcccce---------------ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          438 FAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                       +++|+.+-.|++|.+.......-               +.......+++|..-+..+.|+|...+|++.+-...+++|.
T Consensus       307 -v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  307 -VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             -eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence             88898888999998854322222               11122224579999999999999999999999999999997


Q ss_pred             CC
Q 004270          503 FK  504 (764)
Q Consensus       503 ~~  504 (764)
                      -.
T Consensus       386 ~~  387 (609)
T KOG4227|consen  386 DH  387 (609)
T ss_pred             cc
Confidence            44

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.2e-15  Score=139.23  Aligned_cols=166  Identities=11%  Similarity=0.148  Sum_probs=138.4

Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      +.+.....+|+|.+|++|+..+|++..+..|.||......   ...++..| ...|+.+.|.|.++ .|++++.|..-++
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayV   81 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYV   81 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCccc
Confidence            3444456899999999999999999999999999987554   45566555 88999999999998 7999999999999


Q ss_pred             EEC-CCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          252 WNL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       252 wd~-~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      |.. ..+  ++.-.+. -+....+++.|+|.++.+++|+.-+.|.||-++..+.-+........+...|+++.|+|++-+
T Consensus        82 w~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             cccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            998 444  3333444 588999999999999999999999999999988765543333444567888999999999999


Q ss_pred             EEEEeCCCcEEEEEe
Q 004270          329 ILSAGQDRAFRLFSV  343 (764)
Q Consensus       329 l~s~~~dg~i~i~d~  343 (764)
                      ++.|+.|+..|+|+.
T Consensus       161 laaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSA  175 (361)
T ss_pred             ecccccCcceeEEEE
Confidence            999999999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=4.3e-16  Score=166.02  Aligned_cols=266  Identities=17%  Similarity=0.198  Sum_probs=184.6

Q ss_pred             Ee-cCceEEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccc---cceeeEecCCccccEEEEeCCCCCC
Q 004270           80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL---APVGHVKLDDKFTPTCIMHPDTYLN  152 (764)
Q Consensus        80 w~-~~~~~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~  152 (764)
                      |+ +|..++++..|+..|..++.   ++.+++|||.||+|++||...-....   ....++......+..+.+-+.+  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence            65 46778889999999998886   46899999999999999987644321   1122233234444555566666  7


Q ss_pred             EEEEEeCCCcEEEEeCCCC--e-----EEEEEcCC-CCCeEE-EEEcCC-C-CEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270          153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISS-CVSSPA-L-DVVAVGCSDGKIHVHNVRYDEELVTFTH  221 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~--~-----~~~~~~~h-~~~i~~-~~~sp~-~-~~la~g~~dg~i~iwd~~~~~~~~~~~~  221 (764)
                      .+|+++.||.|++.+++..  +     +......+ .+.+.. -+|... + ..|+.+...+.|..||.+......+++.
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            8999999999999988752  1     11112222 233333 344332 2 3788888899999999998776665553


Q ss_pred             c-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEc--CCCcEEEE
Q 004270          222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSAS--ADNSIKMW  295 (764)
Q Consensus       222 ~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~--~d~~i~vw  295 (764)
                      . ..|.|++++.+|.+. .+++|+..|.+.+||++-+.++.....++..++..+..+|-.   ...++++  ..+.|.+|
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            2 247899999999999 999999999999999999988888876777888888887743   3444444  47889999


Q ss_pred             EecCCCCCceeeEe---------c------cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          296 IFDTTDGDPRLLRF---------R------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       296 ~~~~~~~~~~~~~~---------~------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      ++.++.....+...         .      +.+.-......+...+..+++|+.|..||.||......
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            98877432211111         0      01122223334444566889999999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.3e-15  Score=139.55  Aligned_cols=288  Identities=20%  Similarity=0.236  Sum_probs=194.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---  257 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---  257 (764)
                      ...+..++|++.-..+|++..|-.|++||-.+ .....++...+..|+|++|.|.+..-|++|+.. -|.+|.....   
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34567889999877889999999999999765 666777766678999999999987788888864 5999976432   


Q ss_pred             -ee--------eeeee-cccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          258 -RL--------QSVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       258 -~~--------~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                       +.        ...++ .+| .+|++++|.+||..+++++. |..|.+||.+++...+  +.  ....+.+.-+.|+|||
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCC
Confidence             11        11122 133 68999999999999999986 6789999998875432  22  2345678889999999


Q ss_pred             CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      .+|+.+.-|+..++|...+.-..                                                         
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~---------------------------------------------------------  273 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTK---------------------------------------------------------  273 (445)
T ss_pred             CEEEEecccceeeeehhccccee---------------------------------------------------------
Confidence            99999999999999964322110                                                         


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec------------Ccccccc----
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL------------DMSERSN----  470 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~------------~~~~~~~----  470 (764)
                       ..     ..     -..+.+...+|+|+|++|+..... .-.+|.+.....-..+.            +......    
T Consensus       274 -er-----w~-----lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~  341 (445)
T KOG2139|consen  274 -ER-----WI-----LGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ  341 (445)
T ss_pred             -cc-----ee-----ccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence             00     00     112588999999999988776543 23344432211111111            0000000    


Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCCeeeeEec----CcceEEEEEee---cCCEEEEEeC
Q 004270          471 YAHNGEVVGVACDSTNTLMISAGYHG--------DIKVWDFKGRDLKSRWEV----GCSLVKIVYHR---VNGLLATVAD  535 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~---~~~~la~~~~  535 (764)
                      .--.+.+.+++|+|.|.+|++.-..+        .|.+||....-.......    ......++|+|   ++.+|.++-.
T Consensus       342 ~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs  421 (445)
T KOG2139|consen  342 RLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS  421 (445)
T ss_pred             ccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec
Confidence            11256788999999999999876543        366777665544433321    13345566666   5667777777


Q ss_pred             CCeEEEEEc
Q 004270          536 DLVIRLFDV  544 (764)
Q Consensus       536 d~~i~v~d~  544 (764)
                      .|.+.-|++
T Consensus       422 TGriq~ypl  430 (445)
T KOG2139|consen  422 TGRIQRYPL  430 (445)
T ss_pred             cCceEeeee
Confidence            777776665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-15  Score=162.36  Aligned_cols=269  Identities=16%  Similarity=0.240  Sum_probs=189.6

Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC---ceeeEeccCCCCCCeeEEEecCCC
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      |+. .|..+..+. .|...|..++.++.. .++++||.||+|++|+.....+.   .+...+...-...+.++...+.+.
T Consensus      1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            665 466677776 688889899888765 89999999999999998765443   222233333567889999999999


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      .++.++.||.|++.++..........                                                      
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~------------------------------------------------------ 1137 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVA------------------------------------------------------ 1137 (1431)
T ss_pred             eEEEEcCCCeEEEEEcccccccccee------------------------------------------------------
Confidence            99999999999999986531111100                                                      


Q ss_pred             cceeecceeecCCCCCCCCeE-EEEEcc-CC-CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270          408 QNFVLGEHILRPCPENPTAVK-ACTISA-CG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~-~~~~s~-~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  484 (764)
                            .....+.....+.+. .-++.. .+ ..++.++..+.|..||+.+.........      ....+.|++++.+|
T Consensus      1138 ------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~------~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1138 ------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN------QLRHGLVTSIVIDP 1205 (1431)
T ss_pred             ------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc------CccccceeEEEecC
Confidence                  000000001112222 222222 22 3788899999999999988766655542      24568899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecC---CEEE-EEe-CCCeEEEEEccCCeEEEEeecCC
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN---GLLA-TVA-DDLVIRLFDVVALRMVRKFEGHT  557 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~---~~la-~~~-~d~~i~v~d~~~~~~~~~~~~h~  557 (764)
                      .+.++++|...|.+.+||++-+.++..+.++  .++..+..+|-.   ...+ +++ ..+.|.+|++.+|.+...+....
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence            9999999999999999999999998888766  788888887743   3444 444 57899999999997766665331


Q ss_pred             C-------------------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          558 D-------------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       558 ~-------------------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +                   .....++..-+.++.+|+.|..||.||...
T Consensus      1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            1                   111223333456889999999999999753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.3e-15  Score=150.94  Aligned_cols=423  Identities=14%  Similarity=0.121  Sum_probs=271.1

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC------------CEEEEEEcCCeEEE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV  207 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~------------~~la~g~~dg~i~i  207 (764)
                      ...+-++|.|   .++.|+ ...|.+.|..+.+.++.+..|...|+.+.|.|..            -+||++...|.|.+
T Consensus        18 ~~A~Dw~~~G---LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   18 RNAADWSPSG---LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccCccc---eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            3455588888   455554 4679999999999999999999999999998732            26778888899999


Q ss_pred             EEccCCceEEEEeccCCCCEEEEEEee---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEE
Q 004270          208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l  283 (764)
                      ||...+..+..+.++ ..++..++|-+   +.+++|++-.....|.+|+..+|+....... ......++.+.| |.+.+
T Consensus        94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCCCcceE
Confidence            999999888888766 78899999876   4445777777788999999999998888773 334566678877 44455


Q ss_pred             EEEcCCCcEEEEEecCC---CCCceeeEeccCCCC----------------CC---------eeEEEecCCCEEEEEeCC
Q 004270          284 MSASADNSIKMWIFDTT---DGDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD  335 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~---~~~~~~~~~~~~h~~----------------~v---------~~i~~~~~~~~l~s~~~d  335 (764)
                      ...+..|.+.+-++-..   ....+.......|..                ..         ..++|+|.-+.++.....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            55555666655543221   111222222222222                11         124567765556656667


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee---
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL---  412 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---  412 (764)
                      +.+.++|++-............               ..++..+-.     ......+.|...+|.+.+|..+....   
T Consensus       252 rellv~dle~~~~l~vvpier~---------------~akfv~vlP-----~~~rd~LfclH~nG~ltirvrk~~~~~f~  311 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERG---------------GAKFVDVLP-----DPRRDALFCLHSNGRLTIRVRKEEPTEFK  311 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccC---------------CcceeEecc-----CCCcceEEEEecCCeEEEEEeeccCcccc
Confidence            7799999876554443321100               001111111     11224566666778888886553211   


Q ss_pred             ----------c--ceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccc------------
Q 004270          413 ----------G--EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------------  467 (764)
Q Consensus       413 ----------~--~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~------------  467 (764)
                                +  .+.+++..  ...+......|. .+.+++-.++|.+.+|++.+|+..........            
T Consensus       312 ~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~  389 (1062)
T KOG1912|consen  312 KPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST  389 (1062)
T ss_pred             ccchhhccccccceEEEeech--hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence                      0  11111111  112222223333 45566667788888898886554322211000            


Q ss_pred             -----------cccccccCcEEEEEECC-----------CC-------CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270          468 -----------RSNYAHNGEVVGVACDS-----------TN-------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (764)
Q Consensus       468 -----------~~~~~h~~~v~~l~~~~-----------~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~  517 (764)
                                 ....+|....++....|           .+       .+++.|...|+|.++|+.++..-..+..+ +.
T Consensus       390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~  469 (1062)
T KOG1912|consen  390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSL  469 (1062)
T ss_pred             eehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccc
Confidence                       01235666665555443           12       26788999999999999999888877666 77


Q ss_pred             eEEEEEeecCCEEEEEeC---------CCeEEEEEccCCeEE--EEeec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          518 LVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMV--RKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~---------d~~i~v~d~~~~~~~--~~~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      |.++.|-...+++-.+..         -+.+.|-|+++|...  +.+++ .+.+|+.+..|..|+||+..-.|.-+.+||
T Consensus       470 VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd  549 (1062)
T KOG1912|consen  470 VKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD  549 (1062)
T ss_pred             eeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence            888888876666654432         246778899988542  22232 457899999999999999999999999999


Q ss_pred             cCccc
Q 004270          586 VILAR  590 (764)
Q Consensus       586 ~~~~~  590 (764)
                      +++..
T Consensus       550 ~kt~~  554 (1062)
T KOG1912|consen  550 LKTLR  554 (1062)
T ss_pred             hccch
Confidence            96543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.72  E-value=5.4e-14  Score=148.52  Aligned_cols=271  Identities=15%  Similarity=0.200  Sum_probs=193.5

Q ss_pred             cceEEEEEeCCeEEEEECCeEEEEecCce--E------EEecccccceEEEE-EeCCEEEEEecCCcEEEEEccCCcccc
Q 004270           57 KKIRALASYRDYTFAAYGNHIAVVKRAHQ--V------ATWSRHSAKVNLLL-LFGEHILSIDIDGNMFIWAFKGIEENL  127 (764)
Q Consensus        57 ~~I~~~~~~~~~~~~a~g~~i~vw~~~~~--~------~~~~~h~~~v~~l~-~~g~~l~s~~~dg~v~vWd~~~~~~~~  127 (764)
                      ++..+.++-.|..+++.|..|.+||....  +      .-+..|  .+.... ..+..++++..-+.+.+=+.+....  
T Consensus         8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~--   83 (967)
T KOG0974|consen    8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII--   83 (967)
T ss_pred             ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh--
Confidence            44555555557888888899999986332  1      114455  111111 2566777776655554433322211  


Q ss_pred             cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC----eEEEEEcCCCCEEEEEEcCC
Q 004270          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSDG  203 (764)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----i~~~~~sp~~~~la~g~~dg  203 (764)
                         ..   -...+..+.+....  .++++++.++.+.+||...+.....+......    ..-+.++++.-++++|+.-+
T Consensus        84 ---~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   84 ---ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             ---hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence               11   11222223344444  67999999999999999888777766543221    12234567777999999999


Q ss_pred             eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE
Q 004270          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  283 (764)
                      .|.+|+....+.-..+. +|.+.|.++.|+.||+ ++++.+.|.++++|++++.+.....--+|...|..+.|+|+  .+
T Consensus       156 ~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             cEEEEeccccCCcceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence            99999998444433344 4599999999999999 99999999999999999998877333489999999999998  89


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      ++++.|.+.++|+.+..     .+....+|. ..+..++..++...+++++.|+.+++|++.....
T Consensus       232 ~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             EEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence            99999999999966543     334556665 4688999998888999999999999999876544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.5e-16  Score=151.14  Aligned_cols=202  Identities=22%  Similarity=0.265  Sum_probs=154.1

Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      .+++|+.+|. .|++|+.||.+|+|+..+...+.... .|...|.++.|+||++.|++.+.| ..+||+.+......+  
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--  222 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--  222 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh--
Confidence            7899999998 99999999999999988777776666 799999999999999999999999 899999887622111  


Q ss_pred             EeccCCCCCCeeEEEecCC---C--EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~---~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                      .....-......++|+.|+   .  .++....-+.++.|++........+.                             
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-----------------------------  273 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-----------------------------  273 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence            1112334456677888766   2  22333345567777654322110000                             


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                        ..........++++++|+||+++++|+.+|.|.+++..+.+.....
T Consensus       274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence                                              0001112368999999999999999999999999999998888777


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      .       ..|...|+.+.|+|+.+++++.+.|....+..+.
T Consensus       320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            6       5999999999999999999999998888877655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.5e-16  Score=162.10  Aligned_cols=236  Identities=16%  Similarity=0.180  Sum_probs=164.5

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (764)
                      +..|.+||..... .+.+..|...+...+|||||+.|+.++.+   ..|.+||+.+++.......  .+...+++|+|||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCC
Confidence            4689999985444 56677788899999999999999987654   4699999988764322211  2345578999999


Q ss_pred             CCEEEEEeCCCcEEE--EECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCC
Q 004270          237 QPLLASGASSGVISI--WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (764)
Q Consensus       237 ~~~l~sg~~dg~i~i--wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (764)
                      +.++++.+.+|.+.|  ||+.+++.. .+. .+...+....|+|||+.|+.++ .++...+|+++...+..+.+    .+
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~  333 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG  333 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence            944444456776555  566666543 344 4667788999999999776555 57889999987654433322    23


Q ss_pred             CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                      ..  ....|+|||++|+..+.++ +.+||+.++..... ..                                       
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~---------------------------------------  370 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS---------------------------------------  370 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC---------------------------------------
Confidence            33  4578999999999888765 55688765432110 00                                       


Q ss_pred             EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc--CCcccceecCccccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY  471 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~  471 (764)
                                                  .  .....+.|+|+|++++.++.+|...+|.+.  +|.....+.        
T Consensus       371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--------  412 (429)
T PRK01742        371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--------  412 (429)
T ss_pred             ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence                                        0  112346799999999999999988887753  455555553        


Q ss_pred             cccCcEEEEEECCC
Q 004270          472 AHNGEVVGVACDST  485 (764)
Q Consensus       472 ~h~~~v~~l~~~~~  485 (764)
                      .|.+.+...+|+|-
T Consensus       413 ~~~g~~~~p~wsp~  426 (429)
T PRK01742        413 GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCCcccCCC
Confidence            67788888999885

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.71  E-value=5e-13  Score=141.34  Aligned_cols=189  Identities=16%  Similarity=0.202  Sum_probs=153.0

Q ss_pred             EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc----cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK----FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (764)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  176 (764)
                      +....++.++.++.+-+||...+..    +..+.....    ....+.++++.  -++++|+.-+.|.+|+...-+.-..
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCCcce
Confidence            4678889999899999999988766    333322222    22333466666  6899999999999999874444446


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      +.+|.+.|..+.++-||.++++.+.|.++++|++++.+.......+|...|..+.|.|+   .+++++.|-+.++|+.+ 
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-  246 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-  246 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-
Confidence            89999999999999999999999999999999999999887555566899999999998   69999999999999764 


Q ss_pred             ceeeeeeeccc-ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          257 RRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       257 ~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      ++.+..+. .| ...+..++..++...++|++.|+.+++|++...
T Consensus       247 ~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            44444666 55 457999999999999999999999999987544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=4.2e-14  Score=129.40  Aligned_cols=227  Identities=16%  Similarity=0.286  Sum_probs=164.4

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCC--cceEEEEEeCCeEEEEECCe--------EEEEecC--ceEEEecc
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKRA--HQVATWSR   91 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~I~~~~~~~~~~~~a~g~~--------i~vw~~~--~~~~~~~~   91 (764)
                      .|..-+++ ..+.-++||+++=.+.......+.  -.+.-|-|--+...+..|+.        +.|||.-  +++.++. 
T Consensus        15 QD~ScFav-a~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-   92 (346)
T KOG2111|consen   15 QDHSCFAV-ATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-   92 (346)
T ss_pred             cCCceEEE-EecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-
Confidence            34444444 457889999998643322221112  33444444444444444433        9999953  3344433 


Q ss_pred             cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEE-EeCCCcEEEEeCCC
Q 004270           92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNIST  170 (764)
Q Consensus        92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~~~dg~i~iwd~~~  170 (764)
                      -..+|.++....++|+..- .+.|.||...+.-..   +..++......-.|++.|......|+. |-.-|.|+|-|+..
T Consensus        93 f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   93 FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            5678999999999999987 788999999854332   444444443334677777664334443 56679999999976


Q ss_pred             CeE--EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe-EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCC
Q 004270          171 KKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       171 ~~~--~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      .+.  ...+..|.+.|.|++.+-+|.+||+++..|+ |||||..+|+.+..+..+. ...|.+++|||++. +||+++..
T Consensus       169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdK  247 (346)
T KOG2111|consen  169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDK  247 (346)
T ss_pred             cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCC
Confidence            655  4778999999999999999999999999987 7999999999999998653 35899999999999 99999999


Q ss_pred             CcEEEEECCCc
Q 004270          247 GVISIWNLEKR  257 (764)
Q Consensus       247 g~i~iwd~~~~  257 (764)
                      |+|.|+.++..
T Consensus       248 gTlHiF~l~~~  258 (346)
T KOG2111|consen  248 GTLHIFSLRDT  258 (346)
T ss_pred             CeEEEEEeecC
Confidence            99999998754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=8.3e-15  Score=131.88  Aligned_cols=279  Identities=11%  Similarity=0.128  Sum_probs=197.8

Q ss_pred             eeeecCCCcceEEec----CCeEEEEEEe----CCeEEEEecC--CCeEEEec-CCCCcceEEEEEeCCe------EEEE
Q 004270           10 IGYITSSVPFSVQRL----GTENFVTVSV----GKAFHIYNCA--KLNLVLVG-PQLPKKIRALASYRDY------TFAA   72 (764)
Q Consensus        10 ~g~~~~~v~~~~~~~----~~~~~~~~~~----~~~i~iwd~~--~~~~~~~~-~~~~~~I~~~~~~~~~------~~~a   72 (764)
                      .+|.+.-.+|++...    .+.+++.+|.    .+.|+|--++  +++++... ..|+-+++.+.|.|+.      .++.
T Consensus        39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence            344333344444432    4678888886    4667666544  45555433 4689999999999984      3445


Q ss_pred             ECCeEEEEecCce---EE--------EecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc
Q 004270           73 YGNHIAVVKRAHQ---VA--------TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK  138 (764)
Q Consensus        73 ~g~~i~vw~~~~~---~~--------~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~  138 (764)
                      +++.+++|+.+.+   +.        +-..+.++++++.+   +-+++.+.|-|-+..|||++++.... ....+-.|.+
T Consensus       119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDK  197 (364)
T KOG0290|consen  119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDK  197 (364)
T ss_pred             ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCc
Confidence            5777999987632   11        12346778999987   57899999999999999999873211 1344556889


Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEEcCCCCCeEEEEEcCC-CCEEEEEEcC-CeEEEEEccCC
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPA-LDVVAVGCSD-GKIHVHNVRYD  213 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~sp~-~~~la~g~~d-g~i~iwd~~~~  213 (764)
                      .+..++|...+. +.+++.+.||+++++|++..+.   +++-.....+...++|++. -+++|+-..| ..|.|.|++..
T Consensus       198 EV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P  276 (364)
T KOG0290|consen  198 EVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP  276 (364)
T ss_pred             ceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence            999999998664 7899999999999999987654   3333333567788888875 4677765554 67999999976


Q ss_pred             c-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee------eeeeecccccCeeEEEEecCC-CEEEE
Q 004270          214 E-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFFANE-PVLMS  285 (764)
Q Consensus       214 ~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~h~~~v~~l~~~~~~-~~l~s  285 (764)
                      . .+..+.. |++.|..++|.|.....+++++.|..+.+||+.+.-.      +...  ...+.|+.+.|++.. ..++.
T Consensus       277 ~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  277 CTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             Ccceehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEE
Confidence            5 4555555 4899999999999988999999999999999975422      1112  356789999999754 46666


Q ss_pred             EcCCCcEEE
Q 004270          286 ASADNSIKM  294 (764)
Q Consensus       286 ~~~d~~i~v  294 (764)
                      +. ++.+.+
T Consensus       354 ~~-~kklei  361 (364)
T KOG0290|consen  354 CF-GKKLEI  361 (364)
T ss_pred             Ee-cCeeeE
Confidence            54 344433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.7e-15  Score=157.88  Aligned_cols=236  Identities=8%  Similarity=0.093  Sum_probs=164.4

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC---CcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      +..|.+||..... ...+. .|...+.+..|+|||+.|+.++.+   ..|.+|++...  ..+.+....+|.   ..++|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~---~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN---GAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc---CceeE
Confidence            4689999986655 34444 577889999999999999887654   36899987654  223444444443   46899


Q ss_pred             ecCCCEEEEEe-CCCcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          323 YANGRHILSAG-QDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       323 ~~~~~~l~s~~-~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|||+.|+.++ .+|...+|.+.... ....+                                                
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------------------------  287 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------------------------  287 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------------------------
Confidence            99999888765 67877766543211 00000                                                


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (764)
                                          ..+...+....|+|||+.++..+ .+|...+|++..........        .+..  ..
T Consensus       288 --------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~~  337 (429)
T PRK01742        288 --------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--YS  337 (429)
T ss_pred             --------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--CC
Confidence                                01224567789999999877655 56788888765432211111        2222  35


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc--cCCeEEEEeecCC
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHT  557 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~--~~~~~~~~~~~h~  557 (764)
                      ..|+|+|++++..+.++ +.+||+.+++....... .......|+|||++|++++.++.+.+|++  .+++..+.+.+|.
T Consensus       338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence            78999999998888765 55599988875433222 23456789999999999999998888876  3578888999999


Q ss_pred             CCeeEEEEcCC
Q 004270          558 DRITDFCFSED  568 (764)
Q Consensus       558 ~~i~~l~~s~d  568 (764)
                      +.+...+|||-
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            99999999984

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.1e-13  Score=136.40  Aligned_cols=355  Identities=15%  Similarity=0.197  Sum_probs=226.9

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +++=+..+ +.+|+....+.......+   ..+....++|++|+++|.+. +..+.|++..++..+.+...  . .++++
T Consensus         5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L   79 (566)
T KOG2315|consen    5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL   79 (566)
T ss_pred             EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence            34444444 888987554433333222   44577889999999888765 47899999998875554443  3 79999


Q ss_pred             EEeeCCCCEEEEEe----------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       231 ~fs~d~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      .|+|-|. +|.+--          ..-.+.+|+++++.....+....... ++..|+.|..+.+-. ..+.+.+|+....
T Consensus        80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f  156 (566)
T KOG2315|consen   80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF  156 (566)
T ss_pred             eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence            9999998 665421          12457899999977666666333333 789999988643322 3467999987663


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCC--CEEEE-----EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      ..   ...  .-|...++.+.++|.+  ..+++     .|.-+.+++|..........+.....                
T Consensus       157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF----------------  215 (566)
T KOG2315|consen  157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF----------------  215 (566)
T ss_pred             cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence            22   222  2357788888888853  23332     34455677776542221111110000                


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                       ....-..+.|.+-|.-|++            
T Consensus       216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------  234 (566)
T KOG2315|consen  216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------  234 (566)
T ss_pred             -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence                                                             0011111222222221111            


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE-
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-  532 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-  532 (764)
                                             +....++..+.   +--.+.++++.+++.......+...++|.++.|+++++-+++ 
T Consensus       235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence                                   00111222111   111245678888776666666677799999999999986665 


Q ss_pred             -EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          533 -VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       533 -~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                       |..-..+.|||++ ++++..+  ..++-+++-|+|.|++|+.+|-+   |.|-|||+.+.+++..+.... .+-+.|+|
T Consensus       289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P  364 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP  364 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence             4556789999986 4555555  35677889999999999988854   789999999988888876543 56689999


Q ss_pred             CCCeEEEEEe------CCCeEEEEecc
Q 004270          609 NMDVLATAHV------DQNGVYLWVNR  629 (764)
Q Consensus       609 ~g~~lat~~~------d~~~i~lW~~~  629 (764)
                      ||++++|+..      |. +++||...
T Consensus       365 dGe~flTATTaPRlrvdN-g~Kiwhyt  390 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDN-GIKIWHYT  390 (566)
T ss_pred             CCcEEEEEeccccEEecC-CeEEEEec
Confidence            9999999885      44 69999874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.9e-13  Score=133.52  Aligned_cols=372  Identities=13%  Similarity=0.180  Sum_probs=235.7

Q ss_pred             ecCCcEEEEEccCCcccccceeeEecC--CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Q 004270          110 DIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC  187 (764)
Q Consensus       110 ~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~  187 (764)
                      ...-.+.+|........   ...+...  ......+++++++   +++..+.+..+.|++..+++.+.+....  .+.++
T Consensus         8 RsSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G---~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L   79 (566)
T KOG2315|consen    8 RSSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG---RLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDL   79 (566)
T ss_pred             EccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC---cEEEEEcCCeEEEEEccCCcEEEEeccc--eeeee
Confidence            33445778877654331   1222221  2224567788888   4555556778999999988766666543  78999


Q ss_pred             EEcCCCCEEEEE-----Ec-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          188 VSSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       188 ~~sp~~~~la~g-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .|||.+.+|.+=     ..     .-.+.+|+++++.....+....+.. .+..|+.|..  +++--..+.+.+|++.+.
T Consensus        80 ~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f  156 (566)
T KOG2315|consen   80 LFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSF  156 (566)
T ss_pred             eecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCc
Confidence            999999998762     11     2457899999977666666543333 5899999986  443344678999999875


Q ss_pred             eeeeeeecccccCeeEEEEecCC-C-EEEE-----EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270          258 RLQSVIREAHDNAIISLHFFANE-P-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~-~-~l~s-----~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (764)
                      +....-  -|...|+.+.++|.+ . .+++     .|.-..+++|.+.... ....+....-....=..+.|.+-|.-|+
T Consensus       157 ~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~LL  233 (566)
T KOG2315|consen  157 KTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTALL  233 (566)
T ss_pred             cceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCceEE
Confidence            444333  378889999999973 3 3332     3445678888665221 1111111111122223455555443322


Q ss_pred             E-EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          331 S-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       331 s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      . ++.|       +...                                                               
T Consensus       234 vLastd-------VDkt---------------------------------------------------------------  243 (566)
T KOG2315|consen  234 VLASTD-------VDKT---------------------------------------------------------------  243 (566)
T ss_pred             EEEEEe-------ecCC---------------------------------------------------------------
Confidence            2 2111       1000                                                               


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                                                +   .+=+.+..+++++++.......+         ...++|.++.|+|+++-+
T Consensus       244 --------------------------n---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF  285 (566)
T KOG2315|consen  244 --------------------------N---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGREF  285 (566)
T ss_pred             --------------------------C---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCCEE
Confidence                                      0   00011223444444421222111         457899999999999766


Q ss_pred             EEE--eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEE
Q 004270          490 ISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFC  564 (764)
Q Consensus       490 ~s~--~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~  564 (764)
                      +.+  -.-..+.|+|++. .++..+ ..++-.++-|+|.|++++.++-+   |.+.|||+.+.+++..+.....  +-+.
T Consensus       286 ~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~e  361 (566)
T KOG2315|consen  286 AVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFE  361 (566)
T ss_pred             EEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEE
Confidence            544  3567888998763 233222 23677889999999999887754   7999999999999988886543  5678


Q ss_pred             EcCCCcEEEEEeC------CCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          565 FSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       565 ~s~dg~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                      |+|||++++|++.      |+.++||+.. |+++..-...+....+.|-|
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeee
Confidence            9999999998874      7789999965 77777666555677788876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.68  E-value=5.6e-12  Score=121.50  Aligned_cols=435  Identities=14%  Similarity=0.132  Sum_probs=265.4

Q ss_pred             ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-------EcCCeEE
Q 004270          134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKIH  206 (764)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g-------~~dg~i~  206 (764)
                      .+|.-........|+-+...++..+.|. +..+++.+|+..+.. .|-+-|+.-.|+|+|+.+|..       ...+.+.
T Consensus        33 ~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~rit-S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly  110 (668)
T COG4946          33 GFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLRIT-SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLY  110 (668)
T ss_pred             hhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeEEe-cccceeccccCCCCCcEEEEEEEEecCCCccccEE
Confidence            3454444455578887777777766664 666678888776644 457888999999999988862       2235688


Q ss_pred             EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE----EEEECCCcee-eeeeecccccCeeEEEEecCCC
Q 004270          207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI----SIWNLEKRRL-QSVIREAHDNAIISLHFFANEP  281 (764)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i----~iwd~~~~~~-~~~~~~~h~~~v~~l~~~~~~~  281 (764)
                      +.+.+.|+..+.--.+ ..--.-.-|.|||+ ++++...-.-.    .+|.+..... ...   -.-++.+.+.+- || 
T Consensus       111 ~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~---LnlGpathiv~~-dg-  183 (668)
T COG4946         111 VVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEP---LNLGPATHIVIK-DG-  183 (668)
T ss_pred             EEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeee---ccCCceeeEEEe-CC-
Confidence            8888888765433332 22233455999998 77665432211    2222221111 111   122344444443 33 


Q ss_pred             EEEEEcCCC------------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc-
Q 004270          282 VLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-  348 (764)
Q Consensus       282 ~l~s~~~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~-  348 (764)
                      .++.|-.--            .=++|.-.......+....+.+|-..+.   .- .++..+....+|.=.+|++.-... 
T Consensus       184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGkD  259 (668)
T COG4946         184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGKD  259 (668)
T ss_pred             EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCch
Confidence            333322111            1245543322222233333444433322   21 222233334455555555432111 


Q ss_pred             cccccchhhhHHHhhccchhhhhccCceeEeeeccc--ccccccceeEeeeCCceEEEEEccceeecceeec-CCCCCCC
Q 004270          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI--RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR-PCPENPT  425 (764)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~  425 (764)
                      .+.                        -+.|.-.-.  ...|+..++.  ...+.++++|..+..+.+..+. +......
T Consensus       260 lrr------------------------HTnFtdYY~R~~nsDGkrIvF--q~~GdIylydP~td~lekldI~lpl~rk~k  313 (668)
T COG4946         260 LRR------------------------HTNFTDYYPRNANSDGKRIVF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKK  313 (668)
T ss_pred             hhh------------------------cCCchhccccccCCCCcEEEE--ecCCcEEEeCCCcCcceeeecCCccccccc
Confidence            000                        001111111  1234444444  3457788998887766544433 1111111


Q ss_pred             CeEEE------E-Ecc-CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-
Q 004270          426 AVKAC------T-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-  496 (764)
Q Consensus       426 ~v~~~------~-~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-  496 (764)
                      ....+      . |++ +|++++..+ .|...+.+...+-.++          .+|.+.|.-..+..+++-++.|..|| 
T Consensus       314 ~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD  382 (668)
T COG4946         314 QPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGD  382 (668)
T ss_pred             cccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCc
Confidence            11111      1 222 567776664 4666777666554443          27888899888888888899999999 


Q ss_pred             eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .+-++|..+++.......-+.|.++..+++|++++++.+...+.++|+++++....=+...+-|+.++|||+++|+|-+-
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            89999999988777766679999999999999999999999999999999987665556668899999999999999876


Q ss_pred             CCC----cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEe
Q 004270          577 MDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       577 ~dg----~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~  618 (764)
                      -+|    .|+++|+..++..+.-...+.=.+-+|.|||++|..-+.
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            655    699999998888776555445677899999999876654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.66  E-value=2.9e-13  Score=131.71  Aligned_cols=359  Identities=13%  Similarity=0.184  Sum_probs=242.1

Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      ..|+..+...-..+....-++...++||.|.+|++.... .|.+|.-.....+..+.+   ..|..+.|+|.++ +|.+-
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw   89 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW   89 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence            456655555555555567889999999999999988775 489999888777777765   3699999999999 88876


Q ss_pred             eCC---------------CcEEEEECCCceeeeeeecccccC--ee-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCce
Q 004270          244 ASS---------------GVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR  305 (764)
Q Consensus       244 ~~d---------------g~i~iwd~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~  305 (764)
                      +..               ..+.+||+.++.++..+. .-..+  .+ -+.|+-+.++++-. ....+.++++ +..-...
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~  166 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH  166 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC
Confidence            533               359999999999998887 44433  44 67888888877655 3457899986 3322212


Q ss_pred             eeEeccCCCCCCeeEEEecCC--CEEEE-----EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      ....+  ....+....++|.+  ..|+.     .+.++++++|.+..+.....-.                         
T Consensus       167 p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------------------------  219 (561)
T COG5354         167 PFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------------------------  219 (561)
T ss_pred             chhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence            22222  13567778888853  33332     3456667777665332211100                         


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-----------cCCc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW  447 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------~~g~  447 (764)
                                               ++.                  ..-..+.|.+.|+++++-.           ....
T Consensus       220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence                                     000                  1223455666666655421           1246


Q ss_pred             EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCCCCeeeeEecCcceEEEEEee
Q 004270          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (764)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (764)
                      +++++++.......         ..-.++|...+|.|.++.+++.+  .+..+.++|++..  +...-....-..+.|+|
T Consensus       257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp  325 (561)
T COG5354         257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP  325 (561)
T ss_pred             EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence            77888773333222         14578999999999888776554  7788999998876  44444456667788999


Q ss_pred             cCCEEEEEeCC---CeEEEEEccCCeEEE-EeecCCCCeeEEEEcCCCcEEEEEe------CCCcEEEEEcCccceEEEE
Q 004270          526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI  595 (764)
Q Consensus       526 ~~~~la~~~~d---~~i~v~d~~~~~~~~-~~~~h~~~i~~l~~s~dg~~l~s~s------~dg~i~iwd~~~~~~~~~~  595 (764)
                      .++++++++-|   |.+.+||......+. .+.+..  .+-+.|+|||+++.+..      .|..|.|||+......   
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---  400 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---  400 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence            99999987665   789999988765444 676543  34568999999988664      3788999998743322   


Q ss_pred             eeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          596 HVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       596 ~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                          ..+.+.|.|.|++..+.+.+.
T Consensus       401 ----el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ----ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ----hhhhccccCCcccceeeccCC
Confidence                567788999888887776654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=6.8e-16  Score=147.72  Aligned_cols=267  Identities=15%  Similarity=0.204  Sum_probs=209.7

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (764)
                      -....+.++.+|+ .|+.|+..|.|..+|..++++...+.  -...|.++.|..+.++++++- .+.+.|||-..     
T Consensus       130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G-----  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG-----  200 (545)
T ss_pred             cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCCC-----
Confidence            3467899999999 78888899999999999999988886  567899999999988887765 56788885322     


Q ss_pred             eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                      ..+..+..| ..|..+.|.|---+|++++..|.++.-|+..++.+.++..+                             
T Consensus       201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----------------------------  250 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----------------------------  250 (545)
T ss_pred             cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------
Confidence            344444433 57889999998888999999999999999988877665432                             


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (764)
                                                             .+.+..++-.|-...+-+|..+|+|.+|...+...+..+. 
T Consensus       251 ---------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-  290 (545)
T KOG1272|consen  251 ---------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-  290 (545)
T ss_pred             ---------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-
Confidence                                                   1566777788888899999999999999999998888775 


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-  543 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d-  543 (764)
                             .|.++|.+++++++|++++|+|.|..++|||++....+.++....+...+++|..| +||. +....|.||. 
T Consensus       291 -------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d  361 (545)
T KOG1272|consen  291 -------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLAL-SYGDHVQIWKD  361 (545)
T ss_pred             -------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceee-ecCCeeeeehh
Confidence                   89999999999999999999999999999999998888888777888889998644 4444 3455788884 


Q ss_pred             ccCCe--EEEEeecC--CCCeeEEEEcCCCcEEEEEeCCC
Q 004270          544 VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       544 ~~~~~--~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      .-.+.  .-..+-.|  .+.|.++.|.|-...|-.|...|
T Consensus       362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            22211  11112223  25789999999777776665544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.8e-14  Score=139.45  Aligned_cols=286  Identities=15%  Similarity=0.210  Sum_probs=207.4

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ....+.|..+|||++++|+|...-.|++||+.+-.+..... -....|.-.-.+.|-..++.-..|++|.+..   ..+ 
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD~SK~v~L~~DR~IefHa---k~G-  125 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDDYSKSVFLQNDRTIEFHA---KYG-  125 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccchhhheEeecCceeeehh---hcC-
Confidence            46678999999999999999999999999998766544332 1223344444455555666667788876652   111 


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (764)
                       ......  -...-..++++.-..-|+.++....|.-+++..+.....+.                              
T Consensus       126 -~hy~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~------------------------------  172 (703)
T KOG2321|consen  126 -RHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE------------------------------  172 (703)
T ss_pred             -eeeeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccc------------------------------
Confidence             111110  11223455665544445555556667778887765544332                              


Q ss_pred             cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (764)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~  463 (764)
                                                            ...+.+.++.+++...++++|+.+|.|..||.........+.
T Consensus       173 --------------------------------------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  173 --------------------------------------TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             --------------------------------------cccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence                                                  223788999999999999999999999999999887777664


Q ss_pred             CccccccccccC-----cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecC-CEEEEEeC
Q 004270          464 DMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN-GLLATVAD  535 (764)
Q Consensus       464 ~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~-~~la~~~~  535 (764)
                      ....  ...|.+     .|+++.|+.+|-.++.|..+|.+.|||+++.+++..-.+.  .+|..+.|.+.+ .--++..+
T Consensus       215 ~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  215 AASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence            3222  113333     4999999999999999999999999999999988877766  789999997753 23344456


Q ss_pred             CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      ...++|||-.+|+....+.. +..++++|+-|++.++++|-.++.+..|=++.
T Consensus       293 k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            67899999999999888874 45599999999999999999888888877664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=9.5e-14  Score=129.04  Aligned_cols=305  Identities=11%  Similarity=0.146  Sum_probs=195.8

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ..+..++|++.-. -++++..|-.|++||-.. +....++......|++++|-|.+. .|+.|+. +-|.+|..+.....
T Consensus        99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence            4678899998654 678888999999999766 555666645667899999999654 6666665 45999987654333


Q ss_pred             cee----------eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270          304 PRL----------LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       304 ~~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      .+.          +....|| .+|++++|.+||..+++++ .|..|.+||..++......                    
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--------------------  234 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--------------------  234 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--------------------
Confidence            232          2223455 7899999999999999887 4678999998876543221                    


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  452 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~  452 (764)
                                                                      ....+.++-+.|||||.++++++-|+..++|+
T Consensus       235 ------------------------------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~  266 (445)
T KOG2139|consen  235 ------------------------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ  266 (445)
T ss_pred             ------------------------------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence                                                            11237788899999999999999999999996


Q ss_pred             CcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270          453 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (764)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (764)
                      ...........        --.+.|...+|+|+|++|+.+.. |.-++|.+.-...-..+.                 -.
T Consensus       267 e~q~wt~erw~--------lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~-----------------~~  320 (445)
T KOG2139|consen  267 ENQSWTKERWI--------LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL-----------------RP  320 (445)
T ss_pred             hcccceeccee--------ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc-----------------Cc
Confidence            54433322222        23458999999999988765554 333344432111100000                 01


Q ss_pred             EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC--------cEEEEEcCccceEEEEe----eCCc
Q 004270          533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------SLRIWDVILARQIDAIH----VDVS  600 (764)
Q Consensus       533 ~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg--------~i~iwd~~~~~~~~~~~----~~~~  600 (764)
                      ++.-...-+-|+..-....--+--.+++.+++|.|.|.+||+.-..+        .|.+||....-.+....    ....
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~  400 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY  400 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence            11112222333321111000011246789999999999999876543        46778876544433321    1223


Q ss_pred             eEEEEEcC---CCCeEEEEEeCCCeEEEEec
Q 004270          601 ITALSLSP---NMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       601 v~~l~~sp---~g~~lat~~~d~~~i~lW~~  628 (764)
                      ...++|+|   +|.+|..+=..|. +.-|.+
T Consensus       401 P~~IsF~pl~n~g~lLsiaWsTGr-iq~ypl  430 (445)
T KOG2139|consen  401 PAYISFGPLKNEGRLLSIAWSTGR-IQRYPL  430 (445)
T ss_pred             CceEEeeecccCCcEEEEEeccCc-eEeeee
Confidence            56667776   6777777766664 655554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=5.5e-15  Score=144.15  Aligned_cols=93  Identities=15%  Similarity=0.306  Sum_probs=87.5

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270          474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~  552 (764)
                      .+.|...+|+|||++||+.+.||.+||+|+.+.+++..++.- +...|++|||||+++++|++|.-|.||.+..++++..
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            458899999999999999999999999999998888776654 8899999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEc
Q 004270          553 FEGHTDRITDFCFS  566 (764)
Q Consensus       553 ~~~h~~~i~~l~~s  566 (764)
                      -+||...|+.++|.
T Consensus       370 GqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  370 GQGHKSWVSVVAFD  383 (636)
T ss_pred             ccccccceeeEeec
Confidence            99999999999998

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.8e-14  Score=139.43  Aligned_cols=277  Identities=14%  Similarity=0.177  Sum_probs=201.4

Q ss_pred             ccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      .|....+.+..+|||++++ +|..--.|++||+....     ++.-.... ..|.-.-.+.|-..++.--.|++|.+..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            4677889999999999765 45557789999987542     22222222 33443444445555555666776655431


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      ...                                                                    |.-.   .-
T Consensus       124 ~G~--------------------------------------------------------------------hy~~---RI  132 (703)
T KOG2321|consen  124 YGR--------------------------------------------------------------------HYRT---RI  132 (703)
T ss_pred             cCe--------------------------------------------------------------------eeee---ec
Confidence            100                                                                    0000   00


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      +..-..++++.-..-|++++....|+.+|+..|..+..+.        ...+.++++..++...+|++|+.+|.|.+||.
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence            1222334444444456667777789999999999988885        55689999999999999999999999999999


Q ss_pred             CCCCeeeeEecCc------------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCC--
Q 004270          504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED--  568 (764)
Q Consensus       504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~d--  568 (764)
                      +.......+....            .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            9888777776543            38999999999999999999999999999988765543 33467899999775  


Q ss_pred             CcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      +..|+|. ....++|||-.+|+....+.....++.+++-|++-++.+|-.+.. +..+=+
T Consensus       285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~-m~~yyi  342 (703)
T KOG2321|consen  285 QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK-MHTYYI  342 (703)
T ss_pred             CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc-ceeEEc
Confidence            3455554 346799999999999999998888999999999999999987774 444433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=5.6e-15  Score=144.08  Aligned_cols=207  Identities=15%  Similarity=0.229  Sum_probs=151.1

Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-----ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                      .-...+++|++....-....+..........++-+|     .+.|--+++|-..|.+.+.+.........+....    .
T Consensus       141 nvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r----~  216 (636)
T KOG2394|consen  141 NVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER----L  216 (636)
T ss_pred             ecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc----c
Confidence            345667788777422211111111122233333333     5677789999999999999987743333232110    1


Q ss_pred             cccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCC----------------------------CeeeeEe-cCcceEEE
Q 004270          472 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR----------------------------DLKSRWE-VGCSLVKI  521 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~----------------------------~~~~~~~-~~~~i~~~  521 (764)
                      -.+..|+++.|-|.+ ..++.+-.+|.+.+||..-.                            .++..+. ....|...
T Consensus       217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f  296 (636)
T KOG2394|consen  217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF  296 (636)
T ss_pred             ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence            234789999998855 45666678899999975311                            1111111 12678899


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-  600 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-  600 (764)
                      +|+|||++||+.+.||.+||||..+.+++..++.--+...+++|||||+||++|++|--|.||.+...+.+..-++|.. 
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW  376 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW  376 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence            9999999999999999999999999998888887788999999999999999999999999999999999999888877 


Q ss_pred             eEEEEEc
Q 004270          601 ITALSLS  607 (764)
Q Consensus       601 v~~l~~s  607 (764)
                      |..++|.
T Consensus       377 Vs~VaFD  383 (636)
T KOG2394|consen  377 VSVVAFD  383 (636)
T ss_pred             eeeEeec
Confidence            9999997

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=5.8e-14  Score=128.49  Aligned_cols=208  Identities=13%  Similarity=0.152  Sum_probs=164.8

Q ss_pred             CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 004270          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY  212 (764)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~  212 (764)
                      -...+...+++++.  ..++++.....|.||.....   +..++++.|...|+++.|+|..+.|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            34556777899998  78999999999999987654   57899999999999999999999999999999999999843


Q ss_pred             C-c--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEE
Q 004270          213 D-E--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA  286 (764)
Q Consensus       213 ~-~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~  286 (764)
                      + +  +...+... +...+++.|+|.+. .+|+|+....|.||-++...-   .+.++..+.+.|++++|+|++-+|++|
T Consensus        87 ~~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            3 2  33344443 78899999999998 899999999999988765432   222334678899999999999999999


Q ss_pred             cCCCcEEEEEecCCCC--------------CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270          287 SADNSIKMWIFDTTDG--------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       287 ~~d~~i~vw~~~~~~~--------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      +.|+..+|+..-...-              ...+........+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999986422110              011222233556789999999999999999999999998876553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=4.5e-14  Score=132.80  Aligned_cols=273  Identities=13%  Similarity=0.181  Sum_probs=189.9

Q ss_pred             CCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCCceeeeee-----ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          225 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVI-----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      ..|++++|..+++.-+..+. .+..+..+.+........+     ......+|..+... |+ .|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence            46777888766653333333 6666777776666554443     11345567766654 33 68888889999999877


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCC--CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (764)
                      .+......+..+..+ .++..+.-++.. ..+++||..  ..+.+||+.+.+++                          
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--------------------------  186 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--------------------------  186 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--------------------------
Confidence            554222222222222 445555555533 344557766  67788887654221                          


Q ss_pred             eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (764)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~  455 (764)
                                                   |...+...                       . +     -+=.|-+     
T Consensus       187 -----------------------------w~aKNvpn-----------------------D-~-----L~LrVPv-----  203 (412)
T KOG3881|consen  187 -----------------------------WSAKNVPN-----------------------D-R-----LGLRVPV-----  203 (412)
T ss_pred             -----------------------------eeccCCCC-----------------------c-c-----ccceeee-----
Confidence                                         11111000                       0 0     0001222     


Q ss_pred             CcccceecCccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCC-CeeeeEecC-cceEEEEEeecCCEEE
Q 004270          456 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA  531 (764)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la  531 (764)
                                          .++++.|-+.  ...+++++.-+.+++||.+.+ +++..+... .+++++...|.+++++
T Consensus       204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy  263 (412)
T KOG3881|consen  204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY  263 (412)
T ss_pred             --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence                                3455667665  788999999999999999855 566677665 8999999999999999


Q ss_pred             EEeCCCeEEEEEccCCeEEEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCC
Q 004270          532 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  609 (764)
Q Consensus       532 ~~~~d~~i~v~d~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~  609 (764)
                      +|..-+.+..||+++++.... +.+-.+.|+++..+|.+++|+++|.|..|||+|+++.+++......+.++++.+.++
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999999887 899999999999999999999999999999999999888888777777787777654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=3.1e-14  Score=131.33  Aligned_cols=330  Identities=16%  Similarity=0.225  Sum_probs=213.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce----EEEEeccC------------CCCEEEEEEeeCCC-CEEEEE
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LVTFTHSM------------RGAVTALAFSSDGQ-PLLASG  243 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~----~~~~~~~~------------~~~v~~l~fs~d~~-~~l~sg  243 (764)
                      ..-|.++.|...|.+||+|..+|+|.++.-.....    ..+..+.|            ...|..+.|.+++. ..+...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56789999999999999999999999996442221    22222211            24688899998764 245556


Q ss_pred             eCCCcEEEEECCCcee-----------------------------------eeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270          244 ASSGVISIWNLEKRRL-----------------------------------QSVIREAHDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      +.|.+|++|.+.....                                   ...+..+|.--|.++.++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            7899999998753311                                   1222257888899999999999888875 


Q ss_pred             CCcEEEEEecCCCCCceeeEeccC----CCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      |=.|.+|+++..++...++.....    -..-|++..|+| .-+.++-.+..|+|++.|++........           
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h-----------  252 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH-----------  252 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence            678999998877665555433221    234578888998 4567777788899999998643211100           


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                                                      
T Consensus       253 --------------------------------------------------------------------------------  252 (433)
T KOG1354|consen  253 --------------------------------------------------------------------------------  252 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecCc------
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC------  516 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~------  516 (764)
                          -.+|.......-..+       ..+--..|..+.|++.|+++++-.. -+|++||+. ..+++.+++.+.      
T Consensus       253 ----sKlfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  253 ----SKLFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             ----hhhhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence                000000000000000       0134567889999999999998765 689999994 566676666431      


Q ss_pred             ----------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE-EEeecCCCC--eeEEEEcCCCcEEEEEeCCCcEEE
Q 004270          517 ----------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-RKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI  583 (764)
Q Consensus       517 ----------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~-~~~~~h~~~--i~~l~~s~dg~~l~s~s~dg~i~i  583 (764)
                                .-..++|+.++.++++|+....+++|+...|... .++......  ...+ .  .-+.+.+++.....  
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~-~--k~~~V~~~g~r~~~--  395 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV-L--KLRLVSSSGKRKRD--  395 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc-c--cceeeecCCCcccc--
Confidence                      1245789989999999999999999997766432 223322221  1111 1  12344444444331  


Q ss_pred             EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW  626 (764)
                           .--+..+.....+...+|+|..+.+|.+..+.  ++++
T Consensus       396 -----~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif  431 (433)
T KOG1354|consen  396 -----EISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIF  431 (433)
T ss_pred             -----ccccchhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence                 12233344445578899999999999998876  6765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.62  E-value=1e-09  Score=123.86  Aligned_cols=478  Identities=14%  Similarity=0.100  Sum_probs=280.9

Q ss_pred             cccceEEEEE--eCCEEEEEecCCcEEEE----EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEE
Q 004270           92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (764)
Q Consensus        92 h~~~v~~l~~--~g~~l~s~~~dg~v~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~i  165 (764)
                      ..+.|.++.+  +...|+.+..+|.|.+.    +..+...     .....-+..+..+.||||.  ..|+..+.+|++.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-----E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~  146 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-----EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLL  146 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-----EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence            4567888875  67889999999999998    4443332     2222234567788899999  78999999998887


Q ss_pred             EeCCCCeEEE------------------------EEcC------------------------CCCCeEEEEEcCCCCEEE
Q 004270          166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA  197 (764)
Q Consensus       166 wd~~~~~~~~------------------------~~~~------------------------h~~~i~~~~~sp~~~~la  197 (764)
                      .+ ++...+.                        .|+|                        +...-..++|-.||.++|
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA  225 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA  225 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence            64 2222221                        1111                        222445788999999999


Q ss_pred             EEEc---C---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---CCcEEEEECCCceeeeeeec---
Q 004270          198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE---  265 (764)
Q Consensus       198 ~g~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~---  265 (764)
                      +.+.   .   ..++||+-+ |....+- ..-.+--.+++|.|.|. ++|+...   ...|.+|.- +|-....+..   
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~  301 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence            8875   2   579999854 5533332 23345557899999999 7877653   456777773 4433333321   


Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~  343 (764)
                      .....|..+.|++|+..|+..-.|. |.+|-...-  .+-+...+. .....+..+.|+| +...|...+.+|.+..++.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            3456899999999999999977655 999965433  222222222 2233455699999 5566777777777877665


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      .-......                                ... ..+.-..+--++..+.+-.++....+.......-..
T Consensus       379 ~~~v~~s~--------------------------------~~~-~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  379 AWDVSRSP--------------------------------GSS-PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             EEEEEecC--------------------------------CCC-ccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            32211100                                000 001112223344455555555444433332222234


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--------eecCc--cccccccccCcEEEEEECCCCCEEEEEe
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (764)
                      +..|.+++|++++..+++-..+|.+.+|.........        .+...  ...........+..++|..++..++...
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD  505 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence            5889999999999999999999999999865543221        11100  0000112245678888888877766666


Q ss_pred             CC---CeEEEEECCCCCe---eeeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeEEEE
Q 004270          494 YH---GDIKVWDFKGRDL---KSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF  565 (764)
Q Consensus       494 ~d---g~v~iwd~~~~~~---~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~  565 (764)
                      .+   ..+.++++...+.   .... .....+..+...++...++.-..+|.+..++...... +..|......+....+
T Consensus       506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~  585 (928)
T PF04762_consen  506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI  585 (928)
T ss_pred             cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence            54   6788888743322   2222 2234555555555555577777888888766554322 2233322222222233


Q ss_pred             cCCC--cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       566 s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ....  ..++.-+..|.+++    +++.+     ...+++.+.+  +.+|+.+.... .+++..+.
T Consensus       586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~  639 (928)
T PF04762_consen  586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN  639 (928)
T ss_pred             CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence            3222  13443344444443    23332     2567777774  55666666665 48888876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.8e-13  Score=143.71  Aligned_cols=237  Identities=13%  Similarity=0.145  Sum_probs=157.8

Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .|.+||...... +.+..+...+.+.+|||||+.|+..+.   +..|.+|++.+++.......  .+.+..++|+|||+.
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence            689999865443 444455778999999999999987642   35799999988764332222  344567899999995


Q ss_pred             EEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       239 ~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      ++++.+.+|  .|.+||+++++......  +...+....|+|||+.|+..+. ++...+|.++...+..+.+   ..+..
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence            555555555  59999998887654433  4456788999999998877665 4567788766554433332   23334


Q ss_pred             CCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          316 PPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      ......|+|||++++..+.+   ..+.+||+.++... .+                                        
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L----------------------------------------  370 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL----------------------------------------  370 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ee----------------------------------------
Confidence            45678999999999876643   24666666443211 00                                        


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc---EEEEECcCCcccceecCccccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~---i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                               ..  .  .......|+|||++++.++.++.   +.++++. |.....+.      
T Consensus       371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------  414 (429)
T PRK03629        371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------  414 (429)
T ss_pred             -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence                                     00  0  11234679999999999988764   6667774 43344443      


Q ss_pred             cccccCcEEEEEECCC
Q 004270          470 NYAHNGEVVGVACDST  485 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~  485 (764)
                        .|.+.+...+|+|-
T Consensus       415 --~~~~~~~~p~Wsp~  428 (429)
T PRK03629        415 --ATDGQVKFPAWSPY  428 (429)
T ss_pred             --cCCCCcCCcccCCC
Confidence              67778888888873

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=4.6e-12  Score=129.29  Aligned_cols=282  Identities=15%  Similarity=0.218  Sum_probs=187.4

Q ss_pred             EEEEcCC----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC----CCcEEEEEeecc-ccccccc
Q 004270          283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS  353 (764)
Q Consensus       283 l~s~~~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~----dg~i~i~d~~~~-~~~~~~~  353 (764)
                      ++.|+..    +.|.+|+++...+....+... .-...+..++++|++++|++...    ++.|..|++... .....+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445544    789999997776655555442 34566778999999999998876    467888887654 1111111


Q ss_pred             chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (764)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (764)
                      ..                                                                 .........++++
T Consensus        81 ~~-----------------------------------------------------------------~~~g~~p~~i~~~   95 (345)
T PF10282_consen   81 SV-----------------------------------------------------------------PSGGSSPCHIAVD   95 (345)
T ss_dssp             EE-----------------------------------------------------------------EESSSCEEEEEEC
T ss_pred             ee-----------------------------------------------------------------ccCCCCcEEEEEe
Confidence            00                                                                 0012566789999


Q ss_pred             cCCCEEEEEe-cCCcEEEEECcC-CcccceecCc-----cccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC
Q 004270          434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (764)
Q Consensus       434 ~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~  505 (764)
                      |++++++++. .+|.+.++++.. |.........     .+...........++.++|+++++++.. ....|.+|++..
T Consensus        96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen   96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            9999998886 588999999987 3333221100     0000112234567899999999888775 345799999986


Q ss_pred             CC--eee--eE--ecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc--CCe--EEEEeec----C--CCCeeEEEEcCC
Q 004270          506 RD--LKS--RW--EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEG----H--TDRITDFCFSED  568 (764)
Q Consensus       506 ~~--~~~--~~--~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~--~~~--~~~~~~~----h--~~~i~~l~~s~d  568 (764)
                      ..  +..  .+  ........++|+|+++++.+..+ ++.|.++++.  +++  .+..+..    .  ......|+++||
T Consensus       176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd  255 (345)
T PF10282_consen  176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD  255 (345)
T ss_dssp             TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred             CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence            65  322  22  33478899999999998877654 6789999988  443  2333321    1  125778999999


Q ss_pred             CcEEEEEe-CCCcEEEEEcC--ccc--eEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          569 GKWLLSSG-MDGSLRIWDVI--LAR--QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       569 g~~l~s~s-~dg~i~iwd~~--~~~--~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      |++|.++. .+.+|.+|++.  +|+  .+..+..... ...++++|+|++|+++..++..|.+|+++.
T Consensus       256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            99988765 56789999993  343  3445554333 899999999999999998888899998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=1.2e-11  Score=126.13  Aligned_cols=309  Identities=15%  Similarity=0.178  Sum_probs=198.1

Q ss_pred             EEEEeCC----CcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcC----CCcEEEEEecCCCCCceeeEe
Q 004270          240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       240 l~sg~~d----g~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      +++|+..    +.|.+|++  +++++...-..........++++|++++|.++..    ++.|..|.++...+....+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            3455544    68888887  5555433322234556778999999999988876    578999998876555555555


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                      ..........++++|++++|+++. .+|++.++++...........                                  
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~----------------------------------  127 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ----------------------------------  127 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence            544556778899999999999887 589999999876432222110                                  


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcc-cceecCcc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGIS-RGSYLDMS  466 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~-~~~~~~~~  466 (764)
                                     ++...     ..-..+.........++.++|+|+++++.... ..|.+|++..... +.....  
T Consensus       128 ---------------~~~~~-----g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~--  185 (345)
T PF10282_consen  128 ---------------TVRHE-----GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS--  185 (345)
T ss_dssp             ---------------EEESE-----EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE--
T ss_pred             ---------------ecccC-----CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec--
Confidence                           00000     00001112334678899999999998886543 4899999876552 111000  


Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECC--CCCe--eeeEec-------CcceEEEEEeecCCEEEEEe
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLATVA  534 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la~~~  534 (764)
                        .........+.++|+|+++++.... .++.|.++++.  ++..  +..+..       ......++++|||++|.++.
T Consensus       186 --~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn  263 (345)
T PF10282_consen  186 --IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN  263 (345)
T ss_dssp             --EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred             --cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence              0024556789999999998886655 67889999988  4422  222221       12578899999999988776


Q ss_pred             -CCCeEEEEEcc--CC--eEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEc--CccceEEEEe--eCCceEEE
Q 004270          535 -DDLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSITAL  604 (764)
Q Consensus       535 -~d~~i~v~d~~--~~--~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~--~~~~~~~~~~--~~~~v~~l  604 (764)
                       ....|.+|+++  ++  +.+..+.........++++|+|++|+++. .++.|.+|++  .+|.+...-.  .-....|+
T Consensus       264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci  343 (345)
T PF10282_consen  264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI  343 (345)
T ss_dssp             CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred             ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence             46789999993  23  34444544445578999999999999887 5678999976  4676654432  12235666


Q ss_pred             EE
Q 004270          605 SL  606 (764)
Q Consensus       605 ~~  606 (764)
                      .|
T Consensus       344 ~f  345 (345)
T PF10282_consen  344 VF  345 (345)
T ss_dssp             EE
T ss_pred             eC
Confidence            65

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.4e-13  Score=141.60  Aligned_cols=170  Identities=12%  Similarity=0.042  Sum_probs=119.4

Q ss_pred             eEEEEEccCCCEEEEE-ecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC-Ce--EEE
Q 004270          427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GD--IKV  500 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~--v~i  500 (764)
                      .....|+|||+.|+.. ..+|  .|++||+.++......         .+...+....|+|+|+.|+..+.+ +.  |.+
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence            3457899999988865 3444  5889999887654332         334567789999999988877654 44  555


Q ss_pred             EECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +|+.+++...............|+|||++++..+.+   ..|.+||+.+++.. .+... .......|+|||++|+.++.
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence            577776554333333455678999999999887653   36889999888643 34322 23456789999999999887


Q ss_pred             CCc---EEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270          578 DGS---LRIWDVILARQIDAIHVD-VSITALSLSP  608 (764)
Q Consensus       578 dg~---i~iwd~~~~~~~~~~~~~-~~v~~l~~sp  608 (764)
                      ++.   +.++++ +|+....+..+ ..+...+|+|
T Consensus       394 ~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        394 QGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            764   677777 46666666543 4588889987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=9.6e-14  Score=130.58  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=183.5

Q ss_pred             CCCcceEEEEEeCC---eEEEEE-CCe-EEEEecCc--------eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEc
Q 004270           54 QLPKKIRALASYRD---YTFAAY-GNH-IAVVKRAH--------QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF  120 (764)
Q Consensus        54 ~~~~~I~~~~~~~~---~~~~a~-g~~-i~vw~~~~--------~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~  120 (764)
                      .-...|+.++|--+   ..+++. ++. +..+....        .+.+..+.+++|..+.-...+|++|..+|.+.+|..
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence            44566778877654   455565 443 33332211        122345567778888877788999999999999999


Q ss_pred             cCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC--CcEEEEeCCCCeEEEEEcCC---------CCCeEEEEE
Q 004270          121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE--GSLQLWNISTKKKLYEFKGW---------GSSISSCVS  189 (764)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h---------~~~i~~~~~  189 (764)
                      ..+..+..+...+..+.+ ...+--+|... ..+++|+..  +.+.+||+...+.+.+-+.-         .-.++.+.|
T Consensus       133 k~~d~hss~l~~la~g~g-~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATGPG-LYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             cCCccccccceeeecCCc-eeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            977765444444443322 22333333332 567779999  89999999998777765432         234567888


Q ss_pred             cCC--CCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc
Q 004270          190 SPA--LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA  266 (764)
Q Consensus       190 sp~--~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  266 (764)
                      -+.  ...+|+++.-+.|++||.+.++ ++.++... ..+++++...|+|. ++++|..-|.+..||++.++.......+
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCC
Confidence            887  7899999999999999999765 66777665 78999999999999 8999999999999999999998884448


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      -.+.|+++..+|..++++++|-|+.+||+|+.+.
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            9999999999999999999999999999998874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=5.1e-12  Score=115.94  Aligned_cols=238  Identities=18%  Similarity=0.242  Sum_probs=158.4

Q ss_pred             eEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEEEeCC------CcEEEEe
Q 004270           96 VNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWN  167 (764)
Q Consensus        96 v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd  167 (764)
                      ..+++|+ ..-..++..|.-.+||+.+.-+..    .+-... .+....-.+.-..+  ..++|+.+      +.|.|||
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~----~~r~~~~~G~~~veMLfR~N~--laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKES----ASRQFIDGGFKIVEMLFRSNY--LALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCchhhh----hhhccccCchhhhhHhhhhce--EEEecCCCCCCCCCceEEEEe
Confidence            3446773 333444445666999998764441    111111 12222222233332  23344433      4799999


Q ss_pred             CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc-CCceEEEEeccC-CCCEEEEEEeeCCCCEEEE-Ee
Q 004270          168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSM-RGAVTALAFSSDGQPLLAS-GA  244 (764)
Q Consensus       168 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~s-g~  244 (764)
                      -...+++.++.- ..+|.++.++++  .|++.. .+.|.||... +.+.+..+.... .....+++-..+.. +||. |-
T Consensus        82 D~k~~~i~el~f-~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~  156 (346)
T KOG2111|consen   82 DLKERCIIELSF-NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGF  156 (346)
T ss_pred             cccCcEEEEEEe-ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCC
Confidence            777788888875 789999999986  455555 4789999988 455666665321 23343433333333 4443 44


Q ss_pred             CCCcEEEEECCCcee--eeeeecccccCeeEEEEecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccCCCCCCeeEE
Q 004270          245 SSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (764)
                      .-|.|.|-|+...+.  ...+. +|.+.|.+++.+.+|..+||+|..|+ ||+||...++.  ..-..+......|.+++
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~--l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL--LQELRRGVDRADIYCIA  233 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE--eeeeecCCchheEEEEE
Confidence            679999999987766  35555 99999999999999999999999987 68997665532  11112223456899999


Q ss_pred             EecCCCEEEEEeCCCcEEEEEeeccc
Q 004270          322 FYANGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       322 ~~~~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      |+|++.+|++++..|++++|.++...
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99999999999999999999997654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.2e-13  Score=142.00  Aligned_cols=178  Identities=14%  Similarity=0.126  Sum_probs=122.9

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      ..|.++|. .|+....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence            35777786 455555666778889999999999999887643   469999999887543 3222 45677899999998


Q ss_pred             CEEEEEeCCCcEEEE--ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270          238 PLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       238 ~~l~sg~~dg~i~iw--d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      .++++.+.+|...||  |+.++. ...+. .+........|+|||+.|+..+. ++...+|.++...+..+.+. .  +.
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~--~g  327 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-F--TG  327 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-c--CC
Confidence            555567777776665  555444 33443 35555677899999998876654 57788888875544333332 1  22


Q ss_pred             CCCeeEEEecCCCEEEEEeCCC---cEEEEEeecc
Q 004270          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~  346 (764)
                      .......|+|||++|+..+.++   .|.+||+.++
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            2344678999999998777554   4777776544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.9e-11  Score=115.04  Aligned_cols=276  Identities=14%  Similarity=0.228  Sum_probs=190.6

Q ss_pred             CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      +.-|.+|++++..+....+.. ..+...++-++++|++++|.++..+   |.+..|.+....                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------   75 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------   75 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------
Confidence            567999999977765544433 3677889999999999999988654   556666654320                  


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-c
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A  444 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~  444 (764)
                                                        +.+...+-            ......+.+.++++++|++++++. .
T Consensus        76 ----------------------------------G~Lt~ln~------------~~~~g~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          76 ----------------------------------GRLTFLNR------------QTLPGSPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             ----------------------------------CeEEEeec------------cccCCCCCeEEEECCCCCEEEEEEcc
Confidence                                              11111110            001124448899999999988775 4


Q ss_pred             CCcEEEEECcC-CcccceecCccccccccccCc----------EEEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeee-
Q 004270          445 GGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSR-  511 (764)
Q Consensus       445 ~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~-  511 (764)
                      .|.|.++-++. |........      ..|.+.          +....+.|++++|++... -..|.+|++..+++... 
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~  183 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD  183 (346)
T ss_pred             CceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence            57999999966 443332211      123332          778889999999998873 34799999998765443 


Q ss_pred             ---EecCcceEEEEEeecCCEEEEEeC-CCeEEEEEccCC-eEEEEeec---------CCCCeeEEEEcCCCcEEEEEeC
Q 004270          512 ---WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       512 ---~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~-~~~~~~~~---------h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                         ++.......+.|+|++++..+.++ +++|-+|..+.. ..+..++.         -.....+|..+|||++|.++..
T Consensus       184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence               344578899999999999888776 889999998873 22333322         1245778999999999997753


Q ss_pred             -CCcEEEEEcCcc-ceEEEE---eeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCC
Q 004270          578 -DGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD  635 (764)
Q Consensus       578 -dg~i~iwd~~~~-~~~~~~---~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~  635 (764)
                       ...|.++.+... ..+..+   ..+.. .....|+++|++|++++.++..|.++..+..-...
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence             336888877642 323322   22333 78999999999999999999889999987655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=8.4e-12  Score=126.17  Aligned_cols=520  Identities=12%  Similarity=0.118  Sum_probs=314.4

Q ss_pred             CCcceEEEEEeCCeEEEEECCe---EEEEecCce-----------------EEEecccccceEEEEEe--CCEEEEEecC
Q 004270           55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID  112 (764)
Q Consensus        55 ~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~-----------------~~~~~~h~~~v~~l~~~--g~~l~s~~~d  112 (764)
                      ......|+++..+.-|+|+|+.   ++|.+.++.                 -+++.||.+.|.-+.++  .+.|-+.+.+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3456789999999999999876   777653221                 22488999999999994  5678888899


Q ss_pred             CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC
Q 004270          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA  192 (764)
Q Consensus       113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~  192 (764)
                      |.|.||=+-.+.-....+.  .-....+.++.+..+|  .++.....||.|.+=.++ |..+.--.-.......+.|++|
T Consensus        93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence            9999999877654111110  1123344555666666  677777777776665543 2222211111223457899999


Q ss_pred             CCEEEEEEcCCeEEEEEccCCc-------eEEEEec---cCCCCEEEEEEe--------eCCCCEEEEEeCCCcEEEEEC
Q 004270          193 LDVVAVGCSDGKIHVHNVRYDE-------ELVTFTH---SMRGAVTALAFS--------SDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~---~~~~~v~~l~fs--------~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      .+.++.+-.+|.+++||.+..-       +.....+   .....|..+.|.        ||.. .|+++..+|.+.|-.-
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRS  246 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhh
Confidence            9999999999999999976321       1111111   112235556654        3555 8999999999988765


Q ss_pred             CCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC---------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      ++......+.  ..-.+....|+++|..|+.+|.+.         .|.++.     .....+..++.....|++++|-..
T Consensus       247 eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  247 ENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             cCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEcCC
Confidence            5554444443  235788999999999999998652         344442     122456666777888999999887


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee----eCCce
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH----MDTAQ  401 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  401 (764)
                      |-.++.+- |+.|.+=+++..-.-..+..                                    .++..-    .....
T Consensus       320 gLriA~Av-dsfiyfanIRP~ykWgy~e~------------------------------------TvVy~y~~~e~p~y~  362 (1189)
T KOG2041|consen  320 GLRIAIAV-DSFIYFANIRPEYKWGYIEE------------------------------------TVVYVYQKEELPQYG  362 (1189)
T ss_pred             ceEEEEEe-cceEEEEeecccceEEEeee------------------------------------EEEEEEccCCCcceE
Confidence            76666544 77777766553321111100                                    011110    12345


Q ss_pred             EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc---ccccccCcEE
Q 004270          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGEVV  478 (764)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~v~  478 (764)
                      +..||..+........       ....++++..+.-.++.-..+|.+.-++.-......-+......   .+...-..|.
T Consensus       363 i~Fwdtk~nek~vK~V-------~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir  435 (1189)
T KOG2041|consen  363 IMFWDTKTNEKTVKTV-------THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR  435 (1189)
T ss_pred             EEEEecccChhhhhhh-------cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence            6678877654321111       33455666666666666666776665532211111000000000   0001111122


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCeee-------------------------eE-------e-cCcceEEEEEee
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-------------------------RW-------E-VGCSLVKIVYHR  525 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------------------~~-------~-~~~~i~~~~~s~  525 (764)
                      -.-..-++..++.++.+ .+.+|.+...+...                         .+       . ...+|.+++.+ 
T Consensus       436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s-  513 (1189)
T KOG2041|consen  436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS-  513 (1189)
T ss_pred             eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence            11122245566666664 56788754321110                         00       1 12566666665 


Q ss_pred             cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC---ccceEEEE-eeCC-c
Q 004270          526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAI-HVDV-S  600 (764)
Q Consensus       526 ~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~---~~~~~~~~-~~~~-~  600 (764)
                       .++|.++-..|.|.-|.+...-+..... -...|.+++.+-+...++.-..-|.+.+.|+.   +|..+..+ +... .
T Consensus       514 -dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errD  591 (1189)
T KOG2041|consen  514 -DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRD  591 (1189)
T ss_pred             -ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhh
Confidence             6889999999999999998876665554 34568999998888888888888888888886   46666544 3333 4


Q ss_pred             eEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCCC
Q 004270          601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS  636 (764)
Q Consensus       601 v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~~  636 (764)
                      |+.+.|..|+..|..--... .+++++....-.|.+
T Consensus       592 VWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s  626 (1189)
T KOG2041|consen  592 VWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSS  626 (1189)
T ss_pred             hhhhhhccCCchHHhhhhhc-eEEEecCcCcccccc
Confidence            99999999887665544444 488888765554443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.7e-13  Score=142.11  Aligned_cols=178  Identities=16%  Similarity=0.134  Sum_probs=123.4

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      ..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ... .+...+++|+|||+
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~-~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF-RGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC-CCCccCceECCCCC
Confidence            368999985 44555566677889999999999999987643   4699999988765432 222 44566889999998


Q ss_pred             CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270          238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       238 ~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      .++++.+.+|  .|++||+.+++... +. .+.......+|+||++.|+.++. ++...+|.++...+..+.+.   .+.
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~g  335 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQG  335 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cCC
Confidence            5555666555  59999998887543 33 45555678899999998887664 56656666554433323222   222


Q ss_pred             CCCeeEEEecCCCEEEEEeCCC---cEEEEEeecc
Q 004270          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~  346 (764)
                      ......+|+|||++++..+.++   .|.+||+.++
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            3445789999999998765433   4777876543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.5e-13  Score=123.80  Aligned_cols=148  Identities=20%  Similarity=0.349  Sum_probs=111.4

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEECC-CCCeeeeEec--CcceEEEEEeecCCEEEEEe--CCCeEEEE
Q 004270          478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF  542 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~d~~i~v~  542 (764)
                      ..+.|+++|++|+.-..          -|...+|.++ .......+..  ..+|.+++|+|+|+.+|+..  .+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45778888887765433          1335555553 2233444443  46799999999999876653  56799999


Q ss_pred             EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeC
Q 004270          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d  619 (764)
                      |++ ++.+..+.  ...++.+.|||+|++|++++.+   |.|.+||+.+.+.+....+. .++.++|||||++|+++...
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            997 66666664  4678899999999999998744   67999999998888887654 47899999999999999863


Q ss_pred             -----CCeEEEEecc
Q 004270          620 -----QNGVYLWVNR  629 (764)
Q Consensus       620 -----~~~i~lW~~~  629 (764)
                           .++++||+..
T Consensus       165 ~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cceeccccEEEEEec
Confidence                 2369999975

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=2.2e-13  Score=125.94  Aligned_cols=336  Identities=15%  Similarity=0.191  Sum_probs=221.2

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE-ccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN-VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ...++.++||.+.|+....-|...-+.+.+.|.+++||- ...++.-..+.+....+++++++.++.. .|+.|-..|++
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv   92 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence            345677889999999999989888899999999999995 3455555555555578999999999988 89999999999


Q ss_pred             EEEECCC----ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          250 SIWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       250 ~iwd~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      .-+.+..    ....+... .|...+..+-|+-...++++.+.|..+.---.+.+.........     ...+++.+.-.
T Consensus        93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~~d~~  166 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQFDAL  166 (404)
T ss_pred             EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-----ccCCCCceeeE
Confidence            9886643    33444444 89999999999988889999999887653322222211111100     11111111111


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                        +...|...|.+....+....                                                          
T Consensus       167 --~~fvGd~~gqvt~lr~~~~~----------------------------------------------------------  186 (404)
T KOG1409|consen  167 --YAFVGDHSGQITMLKLEQNG----------------------------------------------------------  186 (404)
T ss_pred             --EEEecccccceEEEEEeecC----------------------------------------------------------
Confidence              33334344444443332211                                                          


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                              ...+....+|...+++++|.+....+.+|..|..+.+||+..........       .+|.+.|..+...+-
T Consensus       187 --------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  187 --------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQH  251 (404)
T ss_pred             --------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhh
Confidence                    11122223667899999999999999999999999999998766655544       599999999998888


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeee------------------------------eEecC----cceEEEEEeecCCEEE
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKS------------------------------RWEVG----CSLVKIVYHRVNGLLA  531 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------~~~~~----~~i~~~~~s~~~~~la  531 (764)
                      -+.+++++.||.|.+|+.+......                              ...++    +...+...+.......
T Consensus       252 t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p  331 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYP  331 (404)
T ss_pred             heeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccc
Confidence            8999999999999999987542110                              00011    1111111111122222


Q ss_pred             EEeCCCeEEEEEccC-------CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          532 TVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       532 ~~~~d~~i~v~d~~~-------~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +-+..-.+|+-|.--       ..++..+..-...|+.+.+..+-.+|+|+|.|..|+|||+..
T Consensus       332 ~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  332 TMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            222233444443211       122334433335699999998888999999999999999864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.1e-12  Score=138.70  Aligned_cols=232  Identities=15%  Similarity=0.132  Sum_probs=155.5

Q ss_pred             cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC---CCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      .|.++|.+..     ..+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++.... +               
T Consensus       183 ~l~~~d~dg~-----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l---------------  241 (435)
T PRK05137        183 RLAIMDQDGA-----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V---------------  241 (435)
T ss_pred             EEEEECCCCC-----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---------------
Confidence            5666655432     22334467788999999999999887763   4578888876543210 0               


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  446 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g  446 (764)
                                                                        .   .....+...+|+|||+.++.. +.+|
T Consensus       242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence                                                              0   112455678999999987644 4455


Q ss_pred             --cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEEECCCCCeeeeEecCcceEEE
Q 004270          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI  521 (764)
Q Consensus       447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~i~~~  521 (764)
                        .|+++|+.++.... +.        .+........|+|||+.++..+. +|  .|.++|+.+++..........+...
T Consensus       269 ~~~Iy~~d~~~~~~~~-Lt--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        269 NTDIYTMDLRSGTTTR-LT--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             CceEEEEECCCCceEE-cc--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence              47778888776543 22        45555677899999998887763 33  6888898877665544444566778


Q ss_pred             EEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC------CcEEEEEcCccceE
Q 004270          522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI  592 (764)
Q Consensus       522 ~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~  592 (764)
                      .|+|||+.|+....+   ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+      ..+.++|+..+.. 
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-  416 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-  416 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence            999999999887653   3688889865543 3343 22357788999999998866543      2577888765544 


Q ss_pred             EEEeeCCceEEEEEcC
Q 004270          593 DAIHVDVSITALSLSP  608 (764)
Q Consensus       593 ~~~~~~~~v~~l~~sp  608 (764)
                      ..+.....+...+|+|
T Consensus       417 ~~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        417 REVPTPGDASDPAWSP  432 (435)
T ss_pred             EEccCCCCccCcccCC
Confidence            4444444467778876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.5e-12  Score=136.86  Aligned_cols=239  Identities=13%  Similarity=0.113  Sum_probs=156.6

Q ss_pred             CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-C--CcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      ..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+. +  ..|.+||+.+++.....  ...+.+....|+||
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC
Confidence            457777764 4444444443 57899999999998 5555443 2  45999999988754332  24456678999999


Q ss_pred             CCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhh
Q 004270          280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       280 ~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                      |+.|+ +.+.++...+|.++...+.   ...+..+........|+|||+.|+..+. ++...+|.+...           
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----------  316 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----------  316 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----------
Confidence            98776 5677888889888765433   2333345555667889999988876553 345555543211           


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (764)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (427)
T PRK02889        317 --------------------------------------------------------------------------------  316 (427)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCCeeeeEec
Q 004270          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV  514 (764)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~  514 (764)
                                       ++......         .+.......+|+|+|++++..+.++   .|.+||+.+++..... .
T Consensus       317 -----------------~g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~  369 (427)
T PRK02889        317 -----------------GGAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D  369 (427)
T ss_pred             -----------------CCceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence                             00000000         0011122457899999888776554   6999999888755433 3


Q ss_pred             CcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270          515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      ........|+|||+.|+.++.++   .+.+.++ +++..+.+..+.+.+...+|+|-
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            33456789999999998887654   4666676 46666677777788888899874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.56  E-value=1e-11  Score=121.22  Aligned_cols=333  Identities=15%  Similarity=0.209  Sum_probs=220.0

Q ss_pred             EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  285 (764)
                      .+|+..+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+.  | ..|..+.|+|++++|.+
T Consensus        15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence            4555555544444443 367899999999999 7776654 469999988777555554  3 46999999999999998


Q ss_pred             EcCC---------------CcEEEEEecCCCCCceeeEeccCCCCC--Ce-eEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270          286 ASAD---------------NSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       286 ~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      -+..               +.+.+||...+    .++..+.+-..+  .. -+.|+-+.++++-.. ...+.++++ ++.
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n  162 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDN  162 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCc
Confidence            6543               35889988766    566666655554  33 567777777666442 334888886 222


Q ss_pred             ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCe
Q 004270          348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  427 (764)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  427 (764)
                      .. ....                                                            +.+     ....+
T Consensus       163 ~~-~~p~------------------------------------------------------------~~l-----r~~gi  176 (561)
T COG5354         163 IE-EHPF------------------------------------------------------------KNL-----RPVGI  176 (561)
T ss_pred             cc-cCch------------------------------------------------------------hhc-----cccce
Confidence            11 0000                                                            000     01455


Q ss_pred             EEEEEccCCCE--EEE-----EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-------
Q 004270          428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-------  493 (764)
Q Consensus       428 ~~~~~s~~g~~--l~~-----g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-------  493 (764)
                      ....++|.|+.  |+.     +...+.+++|.+..+..+.+..        -....=..+.|.+.|++++.--       
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence            56666665432  221     3456688888887665554332        1122224567788887665321       


Q ss_pred             ----CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       494 ----~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                          ....+.++++....+.......++|...+|.|.++.+++.+  .+..+.++|++.. +.  +......=+.+.|||
T Consensus       249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp  325 (561)
T COG5354         249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP  325 (561)
T ss_pred             cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence                23568888888655555555579999999999998777654  6788999999866 33  333445567788999


Q ss_pred             CCcEEEEEeCC---CcEEEEEcCccceEE-EEeeCCceEEEEEcCCCCeEEEEEe------CCCeEEEEecc
Q 004270          568 DGKWLLSSGMD---GSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHV------DQNGVYLWVNR  629 (764)
Q Consensus       568 dg~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~lat~~~------d~~~i~lW~~~  629 (764)
                      .++|++.++-|   |.+-+||......+. .+. .....-+.|+|||+|+-++..      |. +|.||++-
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn-~i~l~~v~  395 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDN-SIKLWDVY  395 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCc-ceEEEEec
Confidence            99999998865   689999988655444 333 334667789999999887763      33 69999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.7e-12  Score=137.36  Aligned_cols=175  Identities=13%  Similarity=0.119  Sum_probs=121.5

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      ..|.++|.. +.....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence            378899974 5555667778889999999999999988764   468999999888653 33332 56778999999998


Q ss_pred             CEEEEEeCCCc--EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270          238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       238 ~~l~sg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      .++++.+.++.  |.+||+.+++... +. .+........|+|||+.|+..+. ++...+|.++...+..+.+.   .+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~  333 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG  333 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence            55566666655  7788998876544 33 35566778999999998887663 44444444443333223222   234


Q ss_pred             CCCeeEEEecCCCEEEEEeCCC---cEEEEEe
Q 004270          315 APPLCIRFYANGRHILSAGQDR---AFRLFSV  343 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~  343 (764)
                      ..+....|+|||+.|+..+.++   .+.+|++
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            4566788999999998776432   3555554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=9.2e-13  Score=139.14  Aligned_cols=232  Identities=14%  Similarity=0.049  Sum_probs=154.4

Q ss_pred             cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      .|.+||.+..  .   .+.+..+...+.+.+|+|||+.|+..+.+   ..|.+|++.++.....                
T Consensus       185 ~l~i~D~~g~--~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l----------------  243 (433)
T PRK04922        185 ALQVADSDGY--N---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV----------------  243 (433)
T ss_pred             EEEEECCCCC--C---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----------------
Confidence            5777766433  1   22234567789999999999999987643   3577888754432110                


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  446 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g  446 (764)
                                                                        .   .......+..|+|+|+.++.. +.+|
T Consensus       244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence                                                              0   011334467899999987654 4555


Q ss_pred             --cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCe--EEEEECCCCCeeeeEecCcceEEE
Q 004270          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVKI  521 (764)
Q Consensus       447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~i~~~  521 (764)
                        .|++||+.++.... +.        .+.......+|+|+|+.++.++. +|.  |.++++.+++..............
T Consensus       271 ~~~Iy~~d~~~g~~~~-lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        271 NPEIYVMDLGSRQLTR-LT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             CceEEEEECCCCCeEE-Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence              69999998876543 21        44445567899999998887763 444  667777776654433333445578


Q ss_pred             EEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEE
Q 004270          522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI  595 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~  595 (764)
                      +|+|||++++..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++. |.....+
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l  418 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL  418 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence            9999999998876543   6999999888754 443 22345678999999998877653   468888875 4555555


Q ss_pred             eeC-CceEEEEEcC
Q 004270          596 HVD-VSITALSLSP  608 (764)
Q Consensus       596 ~~~-~~v~~l~~sp  608 (764)
                      ..+ ..+...+|+|
T Consensus       419 ~~~~g~~~~p~wsp  432 (433)
T PRK04922        419 VSADGEVREPAWSP  432 (433)
T ss_pred             ccCCCCCCCCccCC
Confidence            443 4577788876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=8.8e-13  Score=121.16  Aligned_cols=159  Identities=18%  Similarity=0.265  Sum_probs=117.5

Q ss_pred             CeEEEEEccCCCEEEEEec----------CCcEEEEECcCC-cccceecCccccccccccCcEEEEEECCCCCEEEEE--
Q 004270          426 AVKACTISACGNFAVLGTA----------GGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--  492 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~----------~g~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--  492 (764)
                      .-..+.|+++|++|++-..          -|...+|.+... .....+.       ....+.|.+++|+|+|+.++..  
T Consensus         7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g   79 (194)
T PF08662_consen    7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYG   79 (194)
T ss_pred             ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEc
Confidence            3456789999998876544          134555555322 2222222       1345679999999999987654  


Q ss_pred             eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC---CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC
Q 004270          493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg  569 (764)
                      ..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.   .|.+.+||.++.+.+..+. |. .++.++|||||
T Consensus        80 ~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG  155 (194)
T PF08662_consen   80 SMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG  155 (194)
T ss_pred             cCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence            367799999997 55555554 467789999999999999874   4679999999999888776 33 47899999999


Q ss_pred             cEEEEEeC------CCcEEEEEcCccceEEEEe
Q 004270          570 KWLLSSGM------DGSLRIWDVILARQIDAIH  596 (764)
Q Consensus       570 ~~l~s~s~------dg~i~iwd~~~~~~~~~~~  596 (764)
                      ++|++++.      |..++||+.. |+++....
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99998874      7889999985 77776544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.54  E-value=1e-10  Score=115.54  Aligned_cols=279  Identities=9%  Similarity=0.002  Sum_probs=179.6

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEccCCceEEEEeccCC------
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------  224 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~----------dg~i~iwd~~~~~~~~~~~~~~~------  224 (764)
                      ++|.+.|..+++.+..+..-..+- .+ +|||++.|+++..          +..|.+||..+.+.+..+..+..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            889999999999999887543333 34 9999998888765          68999999999999998885421      


Q ss_pred             CCEEEEEEeeCCCCEEEEEe-C-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270          225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      .....++++|||+ +|++.. . +..|.+.|+.+++.+..+..  .+...-...+++. .+ +-+.||......++....
T Consensus       105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence            1234789999999 555444 3 79999999999999998872  2222222222222 11 223455554444333221


Q ss_pred             Cceee--EeccCCCCCCe-eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          303 DPRLL--RFRSGHSAPPL-CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       303 ~~~~~--~~~~~h~~~v~-~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                       ....  ..+.+...++. .-.|.+ +|+++..... |+|.+.|+.........                          
T Consensus       180 -~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------------------------  231 (352)
T TIGR02658       180 -PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------------------------  231 (352)
T ss_pred             -eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------------
Confidence             0110  01111000000 004566 7877777666 99999996543321110                          


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe----------cCCcE
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWI  448 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~~g~i  448 (764)
                                               .|..-+.....     ..-.+....-++++++|+.+++..          ..+.|
T Consensus       232 -------------------------~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V  281 (352)
T TIGR02658       232 -------------------------AIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL  281 (352)
T ss_pred             -------------------------eeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence                                     01110000000     001124444599999999998853          22479


Q ss_pred             EEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeEe
Q 004270          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRWE  513 (764)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~~  513 (764)
                      .++|..+++....+.         -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+.
T Consensus       282 ~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       282 FVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            999999999988874         345789999999999 777666 67889999999999988873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=9.2e-12  Score=122.47  Aligned_cols=327  Identities=11%  Similarity=0.110  Sum_probs=205.2

Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      ...||.........-....-.-+-+.|||.|.||++-...| |.+|--.+-..++.|.+.   .|.-+.|||..+ +|++
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT  266 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT  266 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence            45677544322211111223346789999999999988765 889987776777777653   589999999999 7887


Q ss_pred             EeC-----------CCcEEEEECCCceeeeeeecc-cccC-eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          243 GAS-----------SGVISIWNLEKRRLQSVIREA-HDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       243 g~~-----------dg~i~iwd~~~~~~~~~~~~~-h~~~-v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      -+.           ...++|||+.+|.....+... .... -.-..||.|+++++--.. ++|.|++...-    .++..
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~  341 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDK  341 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecc
Confidence            652           257999999999888877621 1112 234689999999998776 57889854332    33333


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                      ..-.-..|....|+|.++.|+--...     ..+.+..+.+.+.++.                                 
T Consensus       342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt---------------------------------  388 (698)
T KOG2314|consen  342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT---------------------------------  388 (698)
T ss_pred             cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee---------------------------------
Confidence            33345678888999987766643211     1122222222211111                                 


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE----------ecCCcEEEEECc
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG----------TAGGWIERFNLQ  454 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g----------~~~g~i~i~~~~  454 (764)
                                       ..+++                  -.-..+.|-.+|.+|++-          +.-..+.+|.+.
T Consensus       389 -----------------~nlfn------------------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir  433 (698)
T KOG2314|consen  389 -----------------KNLFN------------------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR  433 (698)
T ss_pred             -----------------cccee------------------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence                             00111                  111234455566666543          222255666665


Q ss_pred             CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC---CCeEEEEECCC-C---CeeeeEecCcceEEEEEeecC
Q 004270          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKG-R---DLKSRWEVGCSLVKIVYHRVN  527 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~-~---~~~~~~~~~~~i~~~~~s~~~  527 (764)
                      .........        .-...|...+|.|.|..+++-+.   ..++.+|.+.+ .   +++..+.. ...+.+.|+|.|
T Consensus       434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG  504 (698)
T KOG2314|consen  434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG  504 (698)
T ss_pred             ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence            544332221        45678899999999988776553   35788998873 2   22333322 566889999999


Q ss_pred             CEEEEE---eCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeC
Q 004270          528 GLLATV---ADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       528 ~~la~~---~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      ++++++   +..|.+.++|..-..+...-. .| ...+.+.|.|.|||++|++.
T Consensus       505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeee
Confidence            998876   457899999987433322222 24 34678999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=2.8e-10  Score=112.42  Aligned_cols=270  Identities=13%  Similarity=0.108  Sum_probs=176.4

Q ss_pred             CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccc------
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAH------  267 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~h------  267 (764)
                      ++|.+.|..+++.+..+..+. .+ ..+ ++|||+.+.++.+         .+..|.+||..+.+.+..+..+-      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            899999999999999998762 22 235 9999995555556         68899999999999998887321      


Q ss_pred             ccCeeEEEEecCCCEEEEEc-C-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE--------eCCCc
Q 004270          268 DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--------GQDRA  337 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--------~~dg~  337 (764)
                      ......++++|||++|+... . ++.|.+.|+...    +.+....-           |++..++..        +.||.
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEEEEecCCccEEEeecCc
Confidence            12334789999999888766 3 789999998776    44443322           233333322        33444


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      .....+........-                                                ...+++...    ... 
T Consensus       169 ~~~v~~d~~g~~~~~------------------------------------------------~~~vf~~~~----~~v-  195 (352)
T TIGR02658       169 LAKVGYGTKGNPKIK------------------------------------------------PTEVFHPED----EYL-  195 (352)
T ss_pred             eEEEEecCCCceEEe------------------------------------------------eeeeecCCc----ccc-
Confidence            443333221110000                                                000000000    000 


Q ss_pred             cCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCcc-----cceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          418 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                           ...+    .+++ +|+++.+... |.|.+.|+.....     ...+.. ......-..+.+..++++++++.++.
T Consensus       196 -----~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       196 -----INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             -----ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCCcceeEEEcCCCCEEEE
Confidence                 0011    3455 8888888877 9999999644322     211110 00000113344555999999988887


Q ss_pred             Ee----------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccCCeEEEEee
Q 004270          492 AG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       492 ~~----------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~~~~~~~~~  554 (764)
                      ..          ..+.|.++|..+++.+..+.....+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            43          12579999999999999999999999999999999 777666 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.51  E-value=2e-12  Score=119.72  Aligned_cols=248  Identities=18%  Similarity=0.278  Sum_probs=182.0

Q ss_pred             EEEecccccceEEEE--EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270           86 VATWSRHSAKVNLLL--LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~--~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      +..+.||.+.|.+..  +-...+++++.|.+++||--.+.......+...  -........+++..  .+|++|-..|++
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngtv   92 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGTV   92 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccc--eEEEEEEecceE
Confidence            344889988888765  457789999999999999654433322222211  23334455577777  789999999999


Q ss_pred             EEEeCC----CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          164 QLWNIS----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       164 ~iwd~~----~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      .-+.+.    ....++....|...|..+.|+....++++.+.|..+.-.-.+.+..+..+...  .+.+++.|.-.   +
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~---~  167 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL---Y  167 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---E
Confidence            888653    34455667789999999999999999999999988766666666655544332  22223333222   4


Q ss_pred             EEEEeCCCcEEEEECC--CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          240 LASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ...|...|.|.+-.+.  .-.++.++. +|.+.+.+++|.+....|+++..|..+.+||+-...+   ....+.+|...|
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV  243 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKV  243 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhhh
Confidence            4556666666655443  345666676 9999999999999999999999999999999876653   445567999999


Q ss_pred             eeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270          318 LCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      ..+.+.+--+.+++++.||.|.+|+....
T Consensus       244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  244 QALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999988889999999999999998654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=4.9e-11  Score=117.44  Aligned_cols=337  Identities=13%  Similarity=0.163  Sum_probs=220.4

Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  284 (764)
                      ...||.........-... +-.-+-+.|||.|. +|++--..| |.+|--++-..++.+.  |. .|.-+.|||+.++|+
T Consensus       192 svfwN~~~n~p~~ie~Re-nWTetyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLV  265 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERE-NWTETYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLV  265 (698)
T ss_pred             EEEccccCCchhhhhhhh-cceeeeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEE
Confidence            556776543222111111 23457899999999 888876554 8999876666666664  65 589999999999999


Q ss_pred             EEcC-----------CCcEEEEEecCCCCCceeeEeccC---CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          285 SASA-----------DNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       285 s~~~-----------d~~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      |=+.           ...++|||+.++.    +.+.+..   ....-.-..|+.|+++++--..++ |.+|+......  
T Consensus       266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~l--  338 (698)
T KOG2314|consen  266 TYSPEPIIVEEDDNEGQQLIIWDIATGL----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFML--  338 (698)
T ss_pred             EecCCccccCcccCCCceEEEEEccccc----hhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceee--
Confidence            8663           2579999998873    3333222   222233468999999999877654 88888643211  


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                                                                            .+...            -....|...
T Consensus       339 ------------------------------------------------------ld~Ks------------lki~gIr~F  352 (698)
T KOG2314|consen  339 ------------------------------------------------------LDKKS------------LKISGIRDF  352 (698)
T ss_pred             ------------------------------------------------------ecccc------------cCCccccCc
Confidence                                                                  11111            112667778


Q ss_pred             EEccCCCEEEEEecC-----CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe----------CC
Q 004270          431 TISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YH  495 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d  495 (764)
                      .|+|.++.|+.=+..     ..+.+..+.+++.++.-.        -|.-.=..+.|-.+|.+|+.--          .-
T Consensus       353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             ccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            888888877754322     356667777766665543        2333334456667777776432          11


Q ss_pred             CeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccC----CeEEEEeecCCCCeeEEEEcC
Q 004270          496 GDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVA----LRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       496 g~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~----~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      ..+.|+.++.. -++........+...+|-|.|+.+++-+.+   .++.+|.+++    .+++..+..  ...+.+.|+|
T Consensus       425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP  502 (698)
T KOG2314|consen  425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP  502 (698)
T ss_pred             eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence            23556666544 345566677899999999999988876543   5788888773    233444443  4567899999


Q ss_pred             CCcEEEEEe---CCCcEEEEEcCccceEE-EEeeCCceEEEEEcCCCCeEEEEEeCC-----CeEEEEeccc
Q 004270          568 DGKWLLSSG---MDGSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNRC  630 (764)
Q Consensus       568 dg~~l~s~s---~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~lat~~~d~-----~~i~lW~~~~  630 (764)
                      .|++++.+.   ..|.+.++|..-..+.. ....|...+.+.|.|.|+|++|++.-.     .+-++|+++.
T Consensus       503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            999998764   57899999988533322 223355688999999999999988521     2588888754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.49  E-value=2.3e-08  Score=113.13  Aligned_cols=481  Identities=10%  Similarity=0.081  Sum_probs=273.0

Q ss_pred             cceEEe-cCCeEEEEEEeCCeEEEE----ecCCCeEEEecCCCCcceEEEEEeCCeEEE--EECCe-EEEE----e----
Q 004270           18 PFSVQR-LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFA--AYGNH-IAVV----K----   81 (764)
Q Consensus        18 ~~~~~~-~~~~~~~~~~~~~~i~iw----d~~~~~~~~~~~~~~~~I~~~~~~~~~~~~--a~g~~-i~vw----~----   81 (764)
                      ..++.+ .+.+.++++..+|-|.+.    |......--++ .....|.|+++|||..++  ++|.. +.+-    +    
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E  156 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE  156 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence            344444 567788888889999999    66665555554 357899999999995554  44543 3332    1    


Q ss_pred             -------cC----------ceEEEecc------------------------cccceEEEEE--eCCEEEEEec---C---
Q 004270           82 -------RA----------HQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D---  112 (764)
Q Consensus        82 -------~~----------~~~~~~~~------------------------h~~~v~~l~~--~g~~l~s~~~---d---  112 (764)
                             .+          ++.-.++|                        +...-..|+|  ||.++|+.+.   .   
T Consensus       157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR  236 (928)
T ss_pred             eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence                   01          11011111                        2223345666  8999988775   3   


Q ss_pred             CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEc----CCCCCeE
Q 004270          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSIS  185 (764)
Q Consensus       113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~h~~~i~  185 (764)
                      ..++||+-+ +.+    ..+-+.-.+....++|.|.|  +.|++...   ...|.+|. ++|-....|.    .....|.
T Consensus       237 R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  237 RVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             eEEEEECCC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence            359999987 444    22222234455677899999  78887654   34566776 4554444443    3467899


Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~  263 (764)
                      .+.|++++..||+...|. |.+|-..+..  ..+.+.......+..+.|+|.....|...+.+|.+..+++.-...    
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~----  383 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS----  383 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE----
Confidence            999999999999988665 9999887665  233333332345666999998876788888778887776421111    


Q ss_pred             ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       264 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                         +...     ..|+..-.+..-....+++-.+....-.+..-...-....+|..++|++++..+++-..||.+.+|..
T Consensus       384 ---~s~~-----~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  384 ---RSPG-----SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             ---ecCC-----CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence               1100     01111111211122345555555443222222222245678999999999888999999999999986


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      ........ ..........                                            ..     ..........
T Consensus       456 ~~~~~~~~-~~~~~~~~~~--------------------------------------------~~-----~~~~~~~~~~  485 (928)
T PF04762_consen  456 DLKNMWSV-KPPKLLSSIS--------------------------------------------LD-----SMDISDSELP  485 (928)
T ss_pred             cCCCcccc-cCcchhhhcc--------------------------------------------cc-----cccccccccc
Confidence            54322110 0000000000                                            00     0000000112


Q ss_pred             CCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      ...+..++|..+...+++...+   ..+.+++............     ...-.+.+..+...+....++.-..+|.+..
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~  560 (928)
T PF04762_consen  486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQ  560 (928)
T ss_pred             cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence            3567788888877777666654   5777887743332111110     0123344555555555554666677898886


Q ss_pred             EECCCCCee-eeEecCcceEEEEEeecCC--EEEEE-eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          501 WDFKGRDLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       501 wd~~~~~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .+....... ..+....+-..+....+..  .++.| +..|.+++    .++.+      ...+++++++  +.+|+...
T Consensus       561 ~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l------a~~~tSF~v~--~~~Ll~TT  628 (928)
T PF04762_consen  561 LSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL------ASNCTSFAVT--DSFLLFTT  628 (928)
T ss_pred             eecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE------ecCCceEEEE--cCEEEEEe
Confidence            665543222 1222223333333333333  24444 33444443    22222      2567887775  45777777


Q ss_pred             CCCcEEEEEcC
Q 004270          577 MDGSLRIWDVI  587 (764)
Q Consensus       577 ~dg~i~iwd~~  587 (764)
                      ....+++.++.
T Consensus       629 ~~h~l~fv~L~  639 (928)
T PF04762_consen  629 TQHTLKFVHLN  639 (928)
T ss_pred             cCceEEEEECc
Confidence            78889999988

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.9e-10  Score=116.59  Aligned_cols=490  Identities=12%  Similarity=0.130  Sum_probs=296.8

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCe---------------EEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLN---------------LVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ   85 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~---------------~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~   85 (764)
                      ....++++++.||-++|..+.+..               +-.+..||.+.|.-+.+..+..-+.+.+.   |.||-.-+.
T Consensus        24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence            468899999999999999776421               11234689999999999988777666444   999975332


Q ss_pred             --E--EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270           86 --V--ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        86 --~--~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                        .  ..-...++.|.++++  ||..++.+-+||.|.|=.++........+     .......+.++++.  ..++.+-.
T Consensus       104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-----kg~~l~hv~ws~D~--~~~Lf~~a  176 (1189)
T KOG2041|consen  104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-----KGQLLAHVLWSEDL--EQALFKKA  176 (1189)
T ss_pred             cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-----chheccceeecccH--HHHHhhhc
Confidence              1  112335667888887  79999999999998887777665422111     22233467889988  67888888


Q ss_pred             CCcEEEEeCCCC-------eE-E---EEEcCCCCCeEEEEEc--------CCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          160 EGSLQLWNISTK-------KK-L---YEFKGWGSSISSCVSS--------PALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       160 dg~i~iwd~~~~-------~~-~---~~~~~h~~~i~~~~~s--------p~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      +|.+.+||....       .+ +   ..+......|-.+.|.        |+...||++..+|.+.|..-.++.....+.
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d  256 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD  256 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence            899999986432       11 1   1122223345555553        577899999999999998877766655555


Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCC---------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASS---------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~  291 (764)
                      .+  -.+..+.|+++|. +|++++.+         +.|.++. .-|+.+.+++ .....|++++|-..|-.++.+ .|+.
T Consensus       257 tg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gLriA~A-vdsf  330 (1189)
T KOG2041|consen  257 TG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGLRIAIA-VDSF  330 (1189)
T ss_pred             cc--cEeecceecCCCc-EEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCceEEEEE-ecce
Confidence            43  5789999999999 88888743         2455555 3567777777 677889999998777655554 3566


Q ss_pred             EEEEEecCCCC----CceeeEeccCCCCCCeeEEEe---------------------cCCCEEEEEeCCCcEEEEEeecc
Q 004270          292 IKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFY---------------------ANGRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       292 i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~---------------------~~~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      |.+=+++..-.    ....+....+...+-.++.|-                     .+--.|+.-..|+.+.-++.-. 
T Consensus       331 iyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le-  409 (1189)
T KOG2041|consen  331 IYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLE-  409 (1189)
T ss_pred             EEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhh-
Confidence            66554433210    001122222222333333332                     2211122222222221110000 


Q ss_pred             cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (764)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  426 (764)
                                                           .              .+.++..-+-+     .+-.+....-..
T Consensus       410 -------------------------------------~--------------~~~~~~l~LCN-----SIGT~lD~kytd  433 (1189)
T KOG2041|consen  410 -------------------------------------N--------------RSRVYFLQLCN-----SIGTSLDYKYTD  433 (1189)
T ss_pred             -------------------------------------c--------------ccceEEEeeec-----ccCCcCCCCcce
Confidence                                                 0              00000000000     000000011122


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC------------------------ccccccccccCcEEEEEE
Q 004270          427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD------------------------MSERSNYAHNGEVVGVAC  482 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~l~~  482 (764)
                      |.-.-..-++.++++++.+ .+.+|.....+....+..                        .......+..++|.+++.
T Consensus       434 irP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~  512 (1189)
T KOG2041|consen  434 IRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI  512 (1189)
T ss_pred             eeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence            2222222344555555444 455555432211111100                        001123466778888887


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc---CCeEEE-EeecCCC
Q 004270          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVR-KFEGHTD  558 (764)
Q Consensus       483 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~---~~~~~~-~~~~h~~  558 (764)
                      +  .++++.+-..|.|.-|.+.+..+...+.....+.++.++-+...+|+-.--|.+.+.|+.   ++..+. -++....
T Consensus       513 s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~err  590 (1189)
T KOG2041|consen  513 S--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERR  590 (1189)
T ss_pred             c--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhh
Confidence            6  568889999999999999999999988888999999999999999998888899888876   333333 4444567


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          559 RITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      .|.++.|..|+..|+.--+-..+.|++-
T Consensus       591 DVWd~~Wa~dNp~llAlmeKtrmyifrg  618 (1189)
T KOG2041|consen  591 DVWDYEWAQDNPNLLALMEKTRMYIFRG  618 (1189)
T ss_pred             hhhhhhhccCCchHHhhhhhceEEEecC
Confidence            7999999988876665444455666653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.7e-09  Score=102.12  Aligned_cols=302  Identities=13%  Similarity=0.150  Sum_probs=201.1

Q ss_pred             CCcEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       246 dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      +.-|.+|++.+.  +........+.+.++-|+|+|+++.|.++..   +|.|..|.++..++....+........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999998733  3222222357788999999999999888765   47899999988767666666555566677999


Q ss_pred             EEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       321 ~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      +++++|++++++.. -|.|.++-+..........+.                        ...              .+ 
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~------------------------~~h--------------~g-  135 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV------------------------VKH--------------TG-  135 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceee------------------------eec--------------CC-
Confidence            99999999998864 578888888654333222110                        000              00 


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                  .+.+    .+.....+....++|+++++++..-. -.|.+|++..|.........     ......-+
T Consensus       136 ------------~~p~----~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR  194 (346)
T COG2706         136 ------------SGPH----ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR  194 (346)
T ss_pred             ------------CCCC----ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence                        0000    11122447888999999999887653 48999999977665433210     13445678


Q ss_pred             EEEECCCCCEEEEEe-CCCeEEEEECCCC-CeeeeE----------ecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc
Q 004270          479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  545 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~-~dg~v~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~  545 (764)
                      .|+|+|++++..... .+++|.+|.++.. ..+..+          ........+.+++||++|.++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999887665 6899999999874 222222          22366788999999999988754 3478888765


Q ss_pred             C--CeE--EEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEEEcC--ccceEEEEee--CCceEEEEEc
Q 004270          546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV--DVSITALSLS  607 (764)
Q Consensus       546 ~--~~~--~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iwd~~--~~~~~~~~~~--~~~v~~l~~s  607 (764)
                      .  +++  +.....+...-.+..|+++|++|+++..+ ..|.+|.+.  +|++-.....  -....|+.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            4  332  22223344446889999999999999865 468888664  5655443321  1225566664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.44  E-value=2.4e-11  Score=121.26  Aligned_cols=201  Identities=17%  Similarity=0.238  Sum_probs=154.9

Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE-------------------EeCCCCCCEEEEEeCCCcE
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI-------------------MHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~p~~~~~~l~~~~~dg~i  163 (764)
                      +.++|..+.||.+++||...++............+..+....                   .+.+.  ..++.|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence            467788888888888888887763321111111111111110                   12222  468889999999


Q ss_pred             EEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      .+|++..|+..+.+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+... +..+.+++.+|||. +++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence            999999999988885  79999999999999999999999999999999999999988877 77899999999998 888


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC-----CCEEEE-EcCCCcEEEEEecCCCCCceeeEec
Q 004270          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLMS-ASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s-~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      +++  +.|++||+++++.+..+. +|.++|.+++|..+     |.++++ ...+.-+.+|-.+...........+
T Consensus       161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl  232 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSL  232 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheee
Confidence            876  789999999999999999 99999999999877     555554 4456778899877654433333333

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=1.9e-11  Score=113.14  Aligned_cols=292  Identities=12%  Similarity=0.164  Sum_probs=187.0

Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC-CCceeeEeccCCC------------CCCeeEEEecCC--CEEEE
Q 004270          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS  331 (764)
Q Consensus       267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s  331 (764)
                      ...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|.            ..|..++|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            44578899999999999999999999998644332 2333444444443            468889999844  56788


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      .+.|.++++|.+.......+-..  ...+.  -......+++|-+...+.          .+                  
T Consensus       104 stNdktiKlWKi~er~~k~~~~~--~~~~~--~~~~~~~lr~p~~~~~~~----------~v------------------  151 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYN--LPEEG--PPGTITSLRLPVEGRHDL----------EV------------------  151 (433)
T ss_pred             ecCCcceeeeeeecccccccccc--ccccC--CCCccceeeceeeccccc----------ee------------------
Confidence            88999999999875433221000  00000  000000111111100000          00                  


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMI  490 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~  490 (764)
                      ...........|...+.++.+..|+..++++ .|=.|.+|++.-......+....+..+..-..-|++..|+|. ...++
T Consensus       152 ea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~  230 (433)
T KOG1354|consen  152 EASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV  230 (433)
T ss_pred             eeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence            0011111223567889999999999988876 567899999875544444433333222233445788889995 46778


Q ss_pred             EEeCCCeEEEEECCCCCeee----eEe---c----------CcceEEEEEeecCCEEEEEeCCCeEEEEEc-cCCeEEEE
Q 004270          491 SAGYHGDIKVWDFKGRDLKS----RWE---V----------GCSLVKIVYHRVNGLLATVADDLVIRLFDV-VALRMVRK  552 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~~~----~~~---~----------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~-~~~~~~~~  552 (764)
                      -.+..|+|++-|++...+..    .++   .          -..|..+.|+++|+++++-. --+|++||+ ...+++.+
T Consensus       231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVET  309 (433)
T ss_pred             EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceE
Confidence            88888999999998432211    111   0          15688899999999998753 368999999 55677777


Q ss_pred             eecCCC------------Ce---eEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270          553 FEGHTD------------RI---TDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (764)
Q Consensus       553 ~~~h~~------------~i---~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  592 (764)
                      ++-|..            .|   ..++||.++.+++||+....++++++..|...
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence            766642            23   35789999999999999999999998776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=8.4e-11  Score=124.04  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .|.++|..... .+.+..+...+.+..|||||+.|+..+.+   ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence            57777865443 34455567788999999999999876543   368899998876533 2221 344567899999995


Q ss_pred             EEEEEeCCCc--EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       239 ~l~sg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      ++++.+.+|.  |.++|+.+++.... . .+........|+||++.++..+. ++...+|.++...+..+.+. ..+  .
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g--~  350 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEG--E  350 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCC--C
Confidence            5556666665  88889888765443 3 35556678899999997766553 56666776665444333332 122  2


Q ss_pred             CCeeEEEecCCCEEEEEeC-CCcEEEE
Q 004270          316 PPLCIRFYANGRHILSAGQ-DRAFRLF  341 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~-dg~i~i~  341 (764)
                      .....+|+|||++|+..+. ++...+|
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEE
Confidence            2345789999999887654 3434443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.41  E-value=3.6e-10  Score=117.94  Aligned_cols=300  Identities=12%  Similarity=0.092  Sum_probs=187.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      +++++++.+|.|..+|..+|+.+..++.........+  .++..+++++.+|.+..+|..+|+.+.+....  +.+.+..
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p  141 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP  141 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence            5799999999999999999999988765443222222  24678888999999999999999998877653  3333222


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (764)
                      ...++  .++.++.+|.|..||.++|+.+.... ......     .+.... + ..++.+..++.+..+|..++...++.
T Consensus       142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            22233  56667789999999999998877765 211111     111222 2 36777788888888877655322111


Q ss_pred             eEe-ccCCCC--CCeeEEEec--CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       307 ~~~-~~~h~~--~v~~i~~~~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                      ... ..+...  ....+.-+|  .+..++.++.+|.+..+|..+++..                                
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~--------------------------------  264 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL--------------------------------  264 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence            000 000000  000010011  3457777888899999998655322                                


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                             |....               ....  .....+..+++++.+|.+..+|..+|+.+..
T Consensus       265 -----------------------W~~~~---------------~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~  304 (377)
T TIGR03300       265 -----------------------WKRDA---------------SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWK  304 (377)
T ss_pred             -----------------------Eeecc---------------CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence                                   22110               0001  1112467888889999999999999987654


Q ss_pred             ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc-ceEEEEEeecCCEEEEEeCCCeEE
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                      ...       ...........  .+..+++++.+|.|.++|..+++.+..++.+. .+...-... ++.|++++.||.|+
T Consensus       305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~  374 (377)
T TIGR03300       305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLY  374 (377)
T ss_pred             ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEE
Confidence            421       01111122222  35688899999999999999999999888664 333332233 34588888999887


Q ss_pred             EE
Q 004270          541 LF  542 (764)
Q Consensus       541 v~  542 (764)
                      .|
T Consensus       375 ~~  376 (377)
T TIGR03300       375 AF  376 (377)
T ss_pred             Ee
Confidence            65

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=6.8e-11  Score=125.65  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=120.4

Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .|.++|.. +...+.+..+...+...+|+|+|++|+.+..+   ..|.+||+.+++...... . .+.+.+++|+|||+.
T Consensus       171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCCE
Confidence            58888875 34445555667788999999999999987654   479999999886543332 2 456778999999985


Q ss_pred             EEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       239 ~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      ++++.+.++  .|++||+.++......  .+........|+|+++.|+..+. ++...+|.++...+...   .+..+..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~---~l~~~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR---RLTFRGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCCC
Confidence            555555444  5899999887654333  34455567899999998876654 44445554444333222   2233455


Q ss_pred             CCeeEEEecCCCEEEEEeCCC---cEEEEEeec
Q 004270          316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQ  345 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~  345 (764)
                      ......|+|+|++++.++.++   .|.+||+.+
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            677889999999999888765   566776643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=7e-11  Score=125.56  Aligned_cols=207  Identities=14%  Similarity=0.061  Sum_probs=144.8

Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccC
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                      ...+.+++......  ..+.   .+...+...+|+|+|++++.....   ..|++|++.++......         .+.+
T Consensus       169 ~~~l~~~d~~g~~~--~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~  234 (417)
T TIGR02800       169 RYELQVADYDGANP--QTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPG  234 (417)
T ss_pred             cceEEEEcCCCCCC--EEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCC
Confidence            34566666543221  1111   233467888999999999887654   47999999887554322         3445


Q ss_pred             cEEEEEECCCCCEEEE-EeCCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-C--eEEEEEccCCeE
Q 004270          476 EVVGVACDSTNTLMIS-AGYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRM  549 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~i~v~d~~~~~~  549 (764)
                      .+.+++|+|+++.|+. .+.++  .|++||+.+++...............|+|||+.|+..+.. +  .|+++|+.+++.
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            5677899999987764 44444  5888999887655544444445577899999988877653 2  688888887764


Q ss_pred             EEEeecCCCCeeEEEEcCCCcEEEEEeCCC---cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270          550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       550 ~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                       ..+..+...+....|+|||++|+.++.++   .|.+||+.++.. ..+.........+|+|||++|+.++.++.
T Consensus       315 -~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       315 -RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             -EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence             34444556678889999999999888776   799999987654 33333333566789999999998888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.7e-10  Score=120.57  Aligned_cols=133  Identities=9%  Similarity=-0.006  Sum_probs=92.1

Q ss_pred             EEEEEECCCCCEEEEEe-CCCeEEEE--ECCC-CCeeeeEec-CcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCe
Q 004270          477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR  548 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~-~dg~v~iw--d~~~-~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~  548 (764)
                      ....+|+|||+.|+..+ .+|...+|  ++.. +.....+.. ...+....|||||+.|+....+   ..|.+||+.+++
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            34678999999887665 46655555  4432 222333332 3566788999999999877653   479999999887


Q ss_pred             EEEEeecCCCCeeEEEEcCCCcEEEEEeC---CCcEEEEEcCccceEEEEeeCCceEEEEEcCCC
Q 004270          549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (764)
Q Consensus       549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g  610 (764)
                      ... +......+....|+|||++|+..+.   ...|++||+.+++..........+...+|+|-.
T Consensus       363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            643 4333445778999999998875443   357899999888766555555557788888754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=7.6e-11  Score=117.72  Aligned_cols=193  Identities=13%  Similarity=0.256  Sum_probs=157.9

Q ss_pred             cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE------C--------------CCCCEEEEEe
Q 004270          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC------D--------------STNTLMISAG  493 (764)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~--------------~~~~~l~s~~  493 (764)
                      |-+.+++..+.||.+++|+...++....|.....     -.+..++..|      +              .+...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            4567899999999999999999998888753211     1222233332      1              1334677888


Q ss_pred             CCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270          494 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       494 ~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      ..|.|.+|+...++....+..   .+++.++.++.+-..|.+++.|+.+..|+....+.++.+++....+.+++.+|||.
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            899999999999999888873   38899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCC-----CCeEEEEEeCCCeEEEEecccccC
Q 004270          571 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVNRCMFS  633 (764)
Q Consensus       571 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~-----g~~lat~~~d~~~i~lW~~~~~~~  633 (764)
                      .|++|+  +.|++||+++++.+..|.+|.. |.+++|--+     |.++.+...-...+.+|-.+..-.
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK  224 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence            999987  6799999999999999998875 999999877     667666555444699998865433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.6e-10  Score=121.84  Aligned_cols=169  Identities=13%  Similarity=0.005  Sum_probs=111.7

Q ss_pred             EEEEEccCCCEEEE-EecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEE
Q 004270          428 KACTISACGNFAVL-GTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW  501 (764)
Q Consensus       428 ~~~~~s~~g~~l~~-g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iw  501 (764)
                      ...+|+|||+.++. ...+|  .|+++|+.++......         .+.......+|+||++.++..+. ++  .|.++
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            35789999998875 45566  4778888877643321         34455677899999998876653 33  46677


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-C--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d  578 (764)
                      |+.+++..............+|+|||++++..+.+ +  .|.++|+.+++.. .+... .......|+|||++|+..+.+
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence            88777654432222334457899999999887653 3  5666788877653 33322 122345899999998866543


Q ss_pred             -C--cEEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270          579 -G--SLRIWDVILARQIDAIHVD-VSITALSLSP  608 (764)
Q Consensus       579 -g--~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp  608 (764)
                       +  .+++++. +|+....+..+ ..+...+|||
T Consensus       414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence             3  3777786 56666666544 3477788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.9e-10  Score=122.15  Aligned_cols=194  Identities=18%  Similarity=0.050  Sum_probs=132.7

Q ss_pred             CCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCC--e
Q 004270          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D  497 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~  497 (764)
                      ...+....|+|+|+.++..+.+   ..|.+|++.++......         ...+.+...+|+|+|+.|+ +...+|  .
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            3567889999999998776543   36899999887654322         2233455689999999887 444455  6


Q ss_pred             EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      |.+||+.+++...............|+|||+.++..+..   ..|+++|+.+++..+. ...........|+|||++|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEE
Confidence            888899988765544444556678899999988877643   3688888887764332 222223446789999999987


Q ss_pred             EeCC-C--cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe--EEEEec
Q 004270          575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN  628 (764)
Q Consensus       575 ~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~--i~lW~~  628 (764)
                      .+.+ +  .|.+||+.+++.. .+..........|+|||++++.++.++..  +++++.
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            7643 3  5889999887653 33222233466899999999988765432  444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.4e-10  Score=121.48  Aligned_cols=170  Identities=15%  Similarity=0.024  Sum_probs=112.2

Q ss_pred             eEEEEEccCCCEEEEE-ecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEE
Q 004270          427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKV  500 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~i  500 (764)
                      .....|+|+|+.++.. ..+|  .|+++|+.++.... +.        .+........|+|+|+.++..+. +|  .|.+
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~  315 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK  315 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            4467899999988754 4444  68888998876543 22        34445567889999998876653 33  5777


Q ss_pred             EECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +++.+++...............|+|||+.++....++   .|.++|+.+++.. .+. +........|+|||++|+.++.
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        316 VNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEe
Confidence            8888777544332223345678999999998876532   5888999887653 333 2222345689999999987764


Q ss_pred             C---CcEEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270          578 D---GSLRIWDVILARQIDAIHVD-VSITALSLSP  608 (764)
Q Consensus       578 d---g~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp  608 (764)
                      +   ..|.++++. |.....+..+ ..+...+|+|
T Consensus       394 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        394 QQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            4   346777774 4444444433 3466777776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=9.6e-13  Score=135.93  Aligned_cols=270  Identities=16%  Similarity=0.198  Sum_probs=194.4

Q ss_pred             eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC--
Q 004270          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--  336 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--  336 (764)
                      ....++ .|....++++|+-+.+.|+.|+..|.|+++++.++.    ......+|..+++.+.-+.||..+++.+.-.  
T Consensus      1093 ~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCc
Confidence            334455 678899999999999999999999999999998873    4555679999999999999998887765433  


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      -..+|++..-...                                                                .|.
T Consensus      1168 lsaLW~~~s~~~~----------------------------------------------------------------~Hs 1183 (1516)
T KOG1832|consen 1168 LSALWDASSTGGP----------------------------------------------------------------RHS 1183 (1516)
T ss_pred             hHHHhccccccCc----------------------------------------------------------------ccc
Confidence            3556765421100                                                                111


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                      +       ..-.++.|+..-.+-++|+......+||++++....++.....    +....-+...|+|+.++++   .||
T Consensus      1184 f-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1184 F-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred             c-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCc
Confidence            1       3345677777767778888888999999999998887542211    2223336788999998877   355


Q ss_pred             eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .  +||.+..+.++.+..-..-..-.|+|.|.-++..+     .|||+++.++++....-.  -..+.|+..|..+...-
T Consensus      1250 v--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1250 V--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             e--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhh
Confidence            3  79999887777775544444556999999888865     489999998877665432  25677888777554322


Q ss_pred             -----C------------CCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          577 -----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       577 -----~------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                           .            -...|.+|..+.+.+.++.....+..++-+|...+|+..-..+
T Consensus      1321 ~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1321 NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred             hhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence                 0            1245677777788899999988999999999888887765433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.35  E-value=8.4e-09  Score=100.10  Aligned_cols=290  Identities=16%  Similarity=0.159  Sum_probs=187.3

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEcCC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG-SLQLWNISTKKKLYEFKGW  180 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h  180 (764)
                      +|++++..| -|...+.+...+-..     .+. +...+.-..+.-++  +.++.|..|| .+-++|..+++... +...
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~i-----qv~-~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr-~e~~  400 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSI-----QVG-KKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKR-IEKD  400 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeE-----EcC-CCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEE-eeCC
Confidence            699999998 577777665544331     111 22334444555555  5799999999 89999988776554 4445


Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC----CcEEEEECCC
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS----GVISIWNLEK  256 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d----g~i~iwd~~~  256 (764)
                      -+.|.++..+|+|++++++.....+.+.|+.+|.....-+ ...+-|+...|+|+++ ++|-+--+    ..|+++|+.+
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence            7889999999999999999999999999999987654433 3367899999999999 88876554    4799999999


Q ss_pred             ceeeeeeecccccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceeeEeccCCCCCCeeE---------
Q 004270          257 RRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI---------  320 (764)
Q Consensus       257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i---------  320 (764)
                      ++......  ..+.=.+-+|.|++++|..-+.       |..+.=+.+..-.. +-++....+...|....         
T Consensus       479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vsk-Pylv~L~~g~~sP~~q~p~~~~~ea~  555 (668)
T COG4946         479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSK-PYLVVLGRGYYSPFNQPPDEANSEAG  555 (668)
T ss_pred             CeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeecc-ceEEEecCCCCChhhcCchhcCcccc
Confidence            88765544  3333456788999998776543       33332222221110 11111111111111100         


Q ss_pred             -----------EEec--CCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          321 -----------RFYA--NGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       321 -----------~~~~--~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                                 .-.|  .+. .-+++-.+|.|.+++..-......                                   
T Consensus       556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~-----------------------------------  600 (668)
T COG4946         556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQ-----------------------------------  600 (668)
T ss_pred             ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhh-----------------------------------
Confidence                       0011  122 234455566677766532211111                                   


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~  455 (764)
                           ...+....+.+..+|+++....+.        ...++++.+|+||+.+.+ -.+|.+++|+++.
T Consensus       601 -----yy~gq~~kG~l~~ydletkk~~e~--------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         601 -----YYWGQPEKGRLEKYDLETKKVEEY--------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             -----hhcCCCccceEEEEecchhhHHHH--------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence                 112334557778888887655332        278899999999999999 8899999999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.34  E-value=4.6e-09  Score=109.61  Aligned_cols=296  Identities=10%  Similarity=0.034  Sum_probs=184.2

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC-CeEEEEec--CceEEEecccccceEEEEE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG-NHIAVVKR--AHQVATWSRHSAKVNLLLL  101 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g-~~i~vw~~--~~~~~~~~~h~~~v~~l~~  101 (764)
                      .++.+++++.++.+.-+|..+|+.+........-..+.++..+..|+++. +.++.+|.  ++.+-+.............
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            46677888888999999999999987653322222345666667777664 45888985  5554443222211122223


Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc-----ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  176 (764)
                      .++.++.++.+|.+..||..+++..    -+.......     ....++. +   ..++++..+|.+..+|.++|+.+.+
T Consensus       144 ~~~~v~v~~~~g~l~a~d~~tG~~~----W~~~~~~~~~~~~~~~sp~~~-~---~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       144 ANGLVVVRTNDGRLTALDAATGERL----WTYSRVTPALTLRGSASPVIA-D---GGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             ECCEEEEECCCCeEEEEEcCCCcee----eEEccCCCceeecCCCCCEEE-C---CEEEEECCCCEEEEEEccCCCEeee
Confidence            6778888888999999999998873    222221110     0111122 2   3688888899999999999998876


Q ss_pred             EcCCCC----C---eEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          177 FKGWGS----S---ISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       177 ~~~h~~----~---i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      ......    .   ...+.-+|  .+..+.+++.+|.+..+|.++|+.+......   .......  ++. .++.++.+|
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~-~vyv~~~~G  289 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDN-RLYVTDADG  289 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCC-EEEEECCCC
Confidence            532100    0   00111111  3467888888999999999999988766532   1222222  344 577778899


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      .|..+|..+++.+............+...  .+..+++++.+|.+.+++.++.    +.+.....+...+..--...+ .
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG----~~~~~~~~~~~~~~~sp~~~~-~  362 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG----SFVARLKTDGSGIASPPVVVG-D  362 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCccccCCEEEC-C
Confidence            99999999998776553111112222222  3568889999999999986655    344444444433222212223 3


Q ss_pred             EEEEEeCCCcEEEE
Q 004270          328 HILSAGQDRAFRLF  341 (764)
Q Consensus       328 ~l~s~~~dg~i~i~  341 (764)
                      .|+.++.||.|..|
T Consensus       363 ~l~v~~~dG~l~~~  376 (377)
T TIGR03300       363 GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEeCCceEEEe
Confidence            58889999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.1e-10  Score=117.74  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=129.9

Q ss_pred             CCeEEEEEccCCCE---EEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----
Q 004270          425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~---l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----  494 (764)
                      ....+-.|||||+.   +++...+|  .|++.++.++......         ...+.....+|+|||+.|+..+.     
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence            44567799999975   33555554  6888888877654332         23444556899999988886653     


Q ss_pred             CCeEEEEECCCC---CeeeeEecC-cceEEEEEeecCCEEEEEeC-CCe--EEEEEccC-CeEEEEeecCCCCeeEEEEc
Q 004270          495 HGDIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLV--IRLFDVVA-LRMVRKFEGHTDRITDFCFS  566 (764)
Q Consensus       495 dg~v~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~--i~v~d~~~-~~~~~~~~~h~~~i~~l~~s  566 (764)
                      +..+..|++..+   +........ ......+|+|||+.|+..++ +|.  |+++++.. +.....+..+...+....||
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence            223445776653   333333333 34467899999998887764 564  44445542 23345555555677889999


Q ss_pred             CCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270          567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR  629 (764)
Q Consensus       567 ~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~--~~i~lW~~~  629 (764)
                      |||++|+..+.+   ..|.+||+.+++..........+....|+|||++|+....++  ..|++|++.
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            999999876543   469999999887654443334578899999999988665432  247777764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.27  E-value=5.6e-11  Score=120.87  Aligned_cols=291  Identities=16%  Similarity=0.264  Sum_probs=190.9

Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEE
Q 004270          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWN  253 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd  253 (764)
                      .++. .+++.++.++|.|+-+|.++.-|. .+-|+.. +...+-+.+-..-.|-...|+|... .+-++......-.+|+
T Consensus        20 sl~v-~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   20 SLKV-DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             EEEe-cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            3443 567888999999999999988774 4556553 3333334333344677888887642 2444555566677898


Q ss_pred             CCCc--eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270          254 LEKR--RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       254 ~~~~--~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (764)
                      +...  +.+..+..+|..+|+.+.|.|..+ .+++++.|-.+..||++...   +.+.....-......++|+-....++
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchh
Confidence            7543  344444459999999999999776 88999999999999987664   33333333344455667766333444


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      ..+..+.+++||++.+.                                                               
T Consensus       175 asshg~~i~vwd~r~gs---------------------------------------------------------------  191 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGS---------------------------------------------------------------  191 (1081)
T ss_pred             hhccCCceEEEeccCCC---------------------------------------------------------------
Confidence            44455557777765331                                                               


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEE
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLM  489 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l  489 (764)
                                                                     ......       ++|...|.+++|.. ....+
T Consensus       192 -----------------------------------------------~pl~s~-------K~~vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  192 -----------------------------------------------TPLCSL-------KGHVSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             -----------------------------------------------cceEEe-------cccceeeehHHHhhhhhhhh
Confidence                                                           111111       35666777777754 23467


Q ss_pred             EEEeCCCeEEEEECCCC--CeeeeEecCcceEEEEEeecCCEEEEE--eCCCeEEEEEcc----------CCeEEEEeec
Q 004270          490 ISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVV----------ALRMVRKFEG  555 (764)
Q Consensus       490 ~s~~~dg~v~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~i~v~d~~----------~~~~~~~~~~  555 (764)
                      .+++.||+|++||....  +..++.....++..-.+-|-|.-..+-  -.+..+.+++.+          ..+++.+|.|
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G  297 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG  297 (1081)
T ss_pred             cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence            88999999999998754  445555666888888888865532222  122244444332          2367899999


Q ss_pred             CCCCeeEEEEcCCC----------cEEEEEeCCCcEEEEEcCc
Q 004270          556 HTDRITDFCFSEDG----------KWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       556 h~~~i~~l~~s~dg----------~~l~s~s~dg~i~iwd~~~  588 (764)
                      |.+.|....|-..+          -.|+|-+.|.++|+|-+.+
T Consensus       298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99998877764322          1699999999999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.25  E-value=3.2e-09  Score=96.73  Aligned_cols=288  Identities=15%  Similarity=0.155  Sum_probs=188.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEE------------cCCeEEEEEccCCceEE--EEeccCCCCEEEEEEee---CCCCEEEEE
Q 004270          181 GSSISSCVSSPALDVVAVGC------------SDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASG  243 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~------------~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~---d~~~~l~sg  243 (764)
                      .-++.+++..++  +||+|+            ..|.+.+|++...+...  ++.......+..+.|+-   +|...++-+
T Consensus        14 ~~~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a   91 (339)
T KOG0280|consen   14 PVPICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA   91 (339)
T ss_pred             CCCccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec
Confidence            344445544443  666664            34678899887665433  22222245677777763   444456677


Q ss_pred             eCCCcEEEEECCCceeeeeeecccc------cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          244 ASSGVISIWNLEKRRLQSVIREAHD------NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ...|.|.++..........++ +-.      ....++.|++.+..++++-.+|.+.+-+....  ..+.....+.|..+.
T Consensus        92 ~a~G~i~~~r~~~~~ss~~L~-~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~  168 (339)
T KOG0280|consen   92 HARGQIQLYRNDEDESSVHLR-GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEA  168 (339)
T ss_pred             cccceEEEEeeccceeeeeec-ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceee
Confidence            788999999876554444444 111      12457789999999999999999885443322  112334678999999


Q ss_pred             eeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      ....|+. +.+.+.+||.|+.+..||++.+..                                                
T Consensus       169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~------------------------------------------------  200 (339)
T KOG0280|consen  169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT------------------------------------------------  200 (339)
T ss_pred             eeeecccCCCceEEecCCCceEEEEEecCCcc------------------------------------------------
Confidence            9999987 557888999999999999862210                                                


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (764)
                                                                          .+|.-                .+-|...
T Consensus       201 ----------------------------------------------------~i~~n----------------~kvH~~G  212 (339)
T KOG0280|consen  201 ----------------------------------------------------FIWHN----------------SKVHTSG  212 (339)
T ss_pred             ----------------------------------------------------eeeec----------------ceeeecc
Confidence                                                                00100                0267788


Q ss_pred             EEEEEECC-CCCEEEEEeCCCeEEEEECC-CCCeeeeEecCcceEEEEEeecCC-EEEEEeCCCeEEEEEccCC--e---
Q 004270          477 VVGVACDS-TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R---  548 (764)
Q Consensus       477 v~~l~~~~-~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~--~---  548 (764)
                      |.+|.-+| ...++++|+.|..|++||.+ -++++..-...+.|..+..+|.-. .+..++.-.-.+|.+.+.+  +   
T Consensus       213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~  292 (339)
T KOG0280|consen  213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI  292 (339)
T ss_pred             eEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe
Confidence            88888776 56899999999999999998 567777777779999999999533 2233333334556655543  2   


Q ss_pred             EEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEE-EEEcCcc
Q 004270          549 MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLR-IWDVILA  589 (764)
Q Consensus       549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~-iwd~~~~  589 (764)
                      .....+.|.+-...-.|.....+|+|++ .|..++ +|-.-++
T Consensus       293 ~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  293 VLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            3444556766666666644445788876 577655 7755444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.23  E-value=6.9e-09  Score=93.24  Aligned_cols=270  Identities=11%  Similarity=0.091  Sum_probs=178.6

Q ss_pred             CCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       159 ~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      ....+-+|++-+..  .+...       ..+.|.|     ...+||.|+..|...+|...+.+....+...+...|+-+.
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            34456777765432  22222       2344544     3458999999999999999977655544433344343332


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc--CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE-
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-  308 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-  308 (764)
                      =..|...-+..++.|.++++.+++.+......   |..  .+.+++++++++++++.+....|-.|.++....  ..++ 
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~  197 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENI  197 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeee
Confidence            22233334667788999999988766544333   333  388999999999999999999999998876543  2233 


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          309 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                      ........-.+..|+.....++++.+||++.+||++.........                                   
T Consensus       198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~-----------------------------------  242 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI-----------------------------------  242 (344)
T ss_pred             EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-----------------------------------
Confidence            334455566788899988999999999999999998654332211                                   


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                                                  -...+.|.+.++.+.|++.|  .+|+..-.-+.+.+.|++++........+.
T Consensus       243 ----------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  243 ----------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             ----------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence                                        11122467899999999877  466777677899999999987766554332


Q ss_pred             ccccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270          467 ERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (764)
Q Consensus       467 ~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~  505 (764)
                      .. ...|.. .|.+-.|+.++..+.+...+ .+.-|++.+
T Consensus       295 d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  295 DV-ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             cc-cccccccccccccccCCCcccccccch-hhheeeccc
Confidence            22 223444 48888888887766665543 344455443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.22  E-value=1.5e-09  Score=98.79  Aligned_cols=237  Identities=13%  Similarity=0.112  Sum_probs=160.9

Q ss_pred             EEEEEecCCcEEEEEccCCcc--cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEcCC
Q 004270          105 HILSIDIDGNMFIWAFKGIEE--NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW  180 (764)
Q Consensus       105 ~l~s~~~dg~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h  180 (764)
                      .|+-+..+|.|.++..+..+.  ...++...........+.-+++.+  ..++++-.+|.+.+-+.....+  ++.++.|
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H  164 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH  164 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence            456667788888887765443  111222222222223445578888  7899999999999777655544  4588999


Q ss_pred             CCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcc-CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-c
Q 004270          181 GSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R  257 (764)
Q Consensus       181 ~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~  257 (764)
                      .-+.+.+.|+.. .+++.+|+.|+.+.-||++ .++.+..-..-|...|.++.-+|...+++++|+.|-.|++||.++ +
T Consensus       165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            999999999864 4688999999999999999 444444433344678999999988777999999999999999984 5


Q ss_pred             eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEe-C
Q 004270          258 RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG-Q  334 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~  334 (764)
                      +++..-.  -.+.|+.+.++|.-. .++.+.--+-.++-+.+....+ ...+...+.|.+-...-.|......|+|++ .
T Consensus       245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY  322 (339)
T KOG0280|consen  245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY  322 (339)
T ss_pred             CccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence            6665544  558999999998533 3333333444667666554332 224455566766666666644445677765 4


Q ss_pred             CCcEE-EEEeec
Q 004270          335 DRAFR-LFSVIQ  345 (764)
Q Consensus       335 dg~i~-i~d~~~  345 (764)
                      |+.++ +|-..+
T Consensus       323 Dk~~~~~Wl~~t  334 (339)
T KOG0280|consen  323 DKKIRQLWLHIT  334 (339)
T ss_pred             ccceeeeeeecc
Confidence            66655 675443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.6e-10  Score=128.76  Aligned_cols=225  Identities=15%  Similarity=0.254  Sum_probs=171.2

Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeE
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~  273 (764)
                      +.......++...-|..+-+..+   ..++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~---~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM---IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred             ccCCcccCCccccceecccceeE---eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence            33444444455555554432222   223355788888888888 78899999999999999998888888666689999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe---CCCcEEEEEeecccccc
Q 004270          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~i~d~~~~~~~~  350 (764)
                      +.|+.+|+.+..+..||.+.+|...     ++.....+.|......++|-.  ..+++++   .++.+.+||......  
T Consensus      2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-- 2327 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-- 2327 (2439)
T ss_pred             hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--
Confidence            9999999999999999999999765     356677778998888888875  4566654   356677776421100  


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                                                                                                      
T Consensus      2328 -------------------------------------------------------------------------------- 2327 (2439)
T KOG1064|consen 2328 -------------------------------------------------------------------------------- 2327 (2439)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                            +.++                      .       ..|.+.++++++.|..+++++||.+|.|++||++..++++
T Consensus      2328 ------~s~v----------------------~-------~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2328 ------NSLV----------------------H-------TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             ------ccee----------------------e-------eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence                  0000                      0       2799999999999999999999999999999999988887


Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  555 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~  555 (764)
                      .++.        +. ...++++|+..|.++||++.....+..+..
T Consensus      2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            7765        33 577999999999999999998877777653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=2.6e-10  Score=127.19  Aligned_cols=182  Identities=16%  Similarity=0.252  Sum_probs=142.4

Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .++...-|..+.+...  ++.+-..|.++.-+|...+-++|+.||.|++|....++.+..+....+..|+.+.|+.+|. 
T Consensus      2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred             CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence            3444444544322221  2334567888888898899999999999999999999999999876678999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc---CCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      -+..+..||.+.+|... .++....+ .|........|..  ..+++++   .++.+.+||....... .++.  ..|.+
T Consensus      2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred             ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence            78888899999999986 55555555 7988899999976  5677765   3688999986554332 2333  68999


Q ss_pred             CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      .++++++.|..+.|++||.+|.+++||++..+...
T Consensus      2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence            99999999999999999999999999997655433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=3.3e-08  Score=114.26  Aligned_cols=75  Identities=9%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270          518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw  584 (764)
                      ...++++++|.++++-..++.|++||..++.......             ++-.....++++++|+.+++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            4588999999988888999999999998876653321             112356789999999998888899999999


Q ss_pred             EcCccceE
Q 004270          585 DVILARQI  592 (764)
Q Consensus       585 d~~~~~~~  592 (764)
                      |+.+++..
T Consensus       886 d~~~~~~~  893 (1057)
T PLN02919        886 DLNKGEAA  893 (1057)
T ss_pred             ECCCCccc
Confidence            99988753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=3.8e-08  Score=103.07  Aligned_cols=304  Identities=13%  Similarity=0.107  Sum_probs=183.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-Ce-E-----EEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS-SI-S-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~i-~-----~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~  222 (764)
                      +++++++.+|.+.-+|.++|+.+...+.... .. .     .+.-+|  ++..+++++.+|.+.-+|.++|+.+.+....
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            5799999999999999999999988754220 00 0     000111  3567788889999999999999998887653


Q ss_pred             CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc----CeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                        +.+.+--...++  .++.++.+|.|..+|.++|+.+.........    ...+...  .+..++.++.++.+...+..
T Consensus       150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence              233221112244  4666778899999999999988777621110    0011111  12356667778888877766


Q ss_pred             CCCCCceeeEec-cC-CC-CCCeeEEEec--CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      ++...++..... .+ +. .....+..+|  .+..++.++.+|.+..+|..+++..                        
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------  279 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------  279 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence            553222211000 00 00 0000111122  3456777778888888887665432                        


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                     |....               .....  ....+..+++++.+|.+..+|.
T Consensus       280 -------------------------------W~~~~---------------~~~~~--~~~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        280 -------------------------------WKREY---------------GSVND--FAVDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             -------------------------------EeecC---------------CCccC--cEEECCEEEEEcCCCeEEEEEC
Confidence                                           22110               00001  1124678888889999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEE-EEEeecCCEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA  531 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la  531 (764)
                      .+|+.+-.....      .+ ....+..+  .+.+++.++.||.+.+.|..+++.+...+.. ..+.+ ..+  .+..|+
T Consensus       312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~  380 (394)
T PRK11138        312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL  380 (394)
T ss_pred             CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence            998765443210      11 11112222  2457888899999999999999998887654 33322 122  356888


Q ss_pred             EEeCCCeEEEEEc
Q 004270          532 TVADDLVIRLFDV  544 (764)
Q Consensus       532 ~~~~d~~i~v~d~  544 (764)
                      +++.||.++.++.
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            8999999888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=2e-08  Score=104.31  Aligned_cols=190  Identities=11%  Similarity=-0.020  Sum_probs=128.5

Q ss_pred             CeEEEEEccCCCE-EEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCC--CeE
Q 004270          426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYH--GDI  498 (764)
Q Consensus       426 ~v~~~~~s~~g~~-l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d--g~v  498 (764)
                      ......|+|+|+. ++..+..   ..|+++|+.+++.....         ...+......|+|||+.++.. +.+  ..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            5678899999985 5544333   47999999888665543         234455667899999877643 333  568


Q ss_pred             EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~  575 (764)
                      .++|+.+++...............|+|||+.|+..++.   ..|+++|+.+++..+..... .  ....|||||++|+..
T Consensus       260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYS  336 (419)
T ss_pred             EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEE
Confidence            88888888755443333334566899999988887753   26888899887764433221 1  124899999999876


Q ss_pred             eCC---------CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       576 s~d---------g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      +..         ..|.+.|+.++... .+..........|+|||++++.....+..-.||.+
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            643         36888898888653 33323334468999999999888766543445544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=5.2e-10  Score=110.07  Aligned_cols=287  Identities=17%  Similarity=0.193  Sum_probs=193.0

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC---ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +|...|..++-..+.+-+++++.|.+|++|.+......   ..+..+...|..+|..+.|..+-++++++  ||.+.+||
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD  810 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD  810 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence            89999999988888999999999999999998765432   23667778999999999999998888765  78899999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      .-.++.........                                                               ..+
T Consensus       811 PFigr~Laq~~dap---------------------------------------------------------------k~~  827 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAP---------------------------------------------------------------KEG  827 (1034)
T ss_pred             ccccchhHhhhcCc---------------------------------------------------------------ccC
Confidence            76554433221100                                                               001


Q ss_pred             CCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ..+.|.++. +-+...++.| +...+|+++|.+++.....+..-.   ..+.+.-++++++.+.|++++.+-..|+|.+.
T Consensus       828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L  903 (1034)
T KOG4190|consen  828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL  903 (1034)
T ss_pred             CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence            112222221 1133445555 677899999999887766654211   12556778999999999999999999999999


Q ss_pred             ECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEE-EEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270          502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v-~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      |.++|+.+..+... .....++ .|..+.++....|.++.| |....+....+.+....+-.-+  -.-|.-|+++....
T Consensus       904 DaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn  980 (1034)
T KOG4190|consen  904 DARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGN  980 (1034)
T ss_pred             ecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCc
Confidence            99999988777543 3333333 344566777777888888 8877776666555433332211  12366788888777


Q ss_pred             cEEEEEcCc----cceEEEE---eeCCceEEEEEcCCCCeEEEEEeCCCeEEE
Q 004270          580 SLRIWDVIL----ARQIDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYL  625 (764)
Q Consensus       580 ~i~iwd~~~----~~~~~~~---~~~~~v~~l~~sp~g~~lat~~~d~~~i~l  625 (764)
                      .+.||.-..    ...+..+   ..+...++++--|=+.-+..|...|. |.+
T Consensus       981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen  981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred             EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence            888885221    1112222   23445888888885555555555553 543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=9.8e-08  Score=110.39  Aligned_cols=125  Identities=14%  Similarity=0.133  Sum_probs=84.3

Q ss_pred             CCeEEEEEccCCCEEEE-EecCCcEEEEECcCCcccceecCcc-----ccc--------cccccCcEEEEEECCCCCEEE
Q 004270          425 TAVKACTISACGNFAVL-GTAGGWIERFNLQSGISRGSYLDMS-----ERS--------NYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~-g~~~g~i~i~~~~~~~~~~~~~~~~-----~~~--------~~~h~~~v~~l~~~~~~~~l~  490 (764)
                      .....++++|+|+.+++ .+.++.|++||+.++..........     ...        ....-....+++++++|..++
T Consensus       740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            34566788888775444 4445788888877654221100000     000        001112346899999999889


Q ss_pred             EEeCCCeEEEEECCCCCeeeeEecC--------------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          491 SAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      +-..++.|++||..++.........              .....++++++|+++++-+.++.|++||+.+++.
T Consensus       820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            8899999999999887655433211              2567899999999888888999999999998865

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=99.09  E-value=4e-05  Score=82.39  Aligned_cols=587  Identities=13%  Similarity=0.062  Sum_probs=303.0

Q ss_pred             CCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEE-------EecCCCCcceEEEEEeCC-----eEEEEECC-----eE
Q 004270           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLV-------LVGPQLPKKIRALASYRD-----YTFAAYGN-----HI   77 (764)
Q Consensus        15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~-------~~~~~~~~~I~~~~~~~~-----~~~~a~g~-----~i   77 (764)
                      ..++-++.+.+...+.++|.-+-=++-.+.+..-.       -.. ..-+||..|++-..     +.++.+.+     .+
T Consensus       306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL  384 (1096)
T KOG1897|consen  306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL  384 (1096)
T ss_pred             cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence            55667777888888888887333344444332111       111 23458888876533     56665532     28


Q ss_pred             EEEecCc---eEEE--ecccccceEEEE--Ee---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeC
Q 004270           78 AVVKRAH---QVAT--WSRHSAKVNLLL--LF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP  147 (764)
Q Consensus        78 ~vw~~~~---~~~~--~~~h~~~v~~l~--~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p  147 (764)
                      ++.+.+-   +++.  +.| -..+..+.  ++   .++|+.+- -+.-++..+... ..   ......-.....+.++|.
T Consensus       385 RiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e-~e---e~~~~gf~~~~~Tif~S~  458 (1096)
T KOG1897|consen  385 RIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEE-VE---ETEDPGFSTDEQTIFCST  458 (1096)
T ss_pred             EEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccc-eE---EeccccccccCceEEEEc
Confidence            8887543   2333  555 33345554  22   33555443 344455555433 10   111111122334445554


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCE
Q 004270          148 DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV  227 (764)
Q Consensus       148 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v  227 (764)
                      -.+ +.|+-...+ .|++++-.  ..+..+.. .+.++....+.+...+++++.++.+...++..+.............|
T Consensus       459 i~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~ev  533 (1096)
T KOG1897|consen  459 ING-NQLVQVTSN-SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEV  533 (1096)
T ss_pred             cCC-ceEEEEecc-cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheeccee
Confidence            444 345544443 48888743  34455554 45566666666666778888777777777776653333333335789


Q ss_pred             EEEEEeeC--CCC---EEEEEeCCCcEEEEE-CCCceeeeeeeccc---ccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          228 TALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREAH---DNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       228 ~~l~fs~d--~~~---~l~sg~~dg~i~iwd-~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      .|+.++|-  ++.   +++.|.++..+.+.- +.+...+.....+-   ...|.-..|-.|..+|.++..||.+..+.++
T Consensus       534 aCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  534 ACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             EEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            99999975  443   888888776655443 33333333221111   2344555565668899999999999999888


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH-----------------
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA-----------------  361 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------------  361 (764)
                      ...+...-.+...--..|+.--.|+..++.-+.+..|+-..+|..+..-....++......-+                 
T Consensus       614 ~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~  693 (1096)
T KOG1897|consen  614 INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG  693 (1096)
T ss_pred             cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC
Confidence            776543333322233445555555554433333333444444443322111111111000000                 


Q ss_pred             -----------------hhccchhhhhccCc-eeEeeecccccccccceeEeeeCCceEEEEEccceeecc-eeecCCCC
Q 004270          362 -----------------RKLKMKEEELKLKP-VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE-HILRPCPE  422 (764)
Q Consensus       362 -----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~  422 (764)
                                       -.+..........+ -..+.....|.........-...-..++++|-.+.+.-. +.+.. ..
T Consensus       694 ~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E  772 (1096)
T KOG1897|consen  694 ALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NE  772 (1096)
T ss_pred             ceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-cc
Confidence                             00000000000000 000111111111110000001112334445544433211 11110 11


Q ss_pred             CCCCeEEEEEccC-CCEEEEEec----------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          423 NPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       423 ~~~~v~~~~~s~~-g~~l~~g~~----------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                      .-..+.++.|..| +.++++|+.          .|.|.+|....+..+.....      ..-.+.+.++..- +|+++|.
T Consensus       773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e------~~v~Gav~aL~~f-ngkllA~  845 (1096)
T KOG1897|consen  773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE------TVVKGAVYALVEF-NGKLLAG  845 (1096)
T ss_pred             eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee------eeeccceeehhhh-CCeEEEe
Confidence            1234555567777 788888864          58899998877443333210      1223444444432 5666654


Q ss_pred             EeCCCeEEEEECCCCCeee-eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc--CCeEEEEee-cCCCCeeEEEEcC
Q 004270          492 AGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFE-GHTDRITDFCFSE  567 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~--~~~~~~~~~-~h~~~i~~l~~s~  567 (764)
                      -  ...|++|++.+.+.++ .-....++..+...-.|..+++|.--+++.+...+  .|.....-+ -+....+++.+-.
T Consensus       846 I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~  923 (1096)
T KOG1897|consen  846 I--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD  923 (1096)
T ss_pred             c--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence            4  4689999998884443 44455889999999999999999887777765544  333433222 3667788888876


Q ss_pred             CCcEEEEEeCCCcEEEEEcCc-------------------cceEEEEeeCCceEE--EEEcCCCCeEEEEEeCCCeEEE
Q 004270          568 DGKWLLSSGMDGSLRIWDVIL-------------------ARQIDAIHVDVSITA--LSLSPNMDVLATAHVDQNGVYL  625 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~~~-------------------~~~~~~~~~~~~v~~--l~~sp~g~~lat~~~d~~~i~l  625 (764)
                      +..|+. +..+|.+.+-..++                   |+.+..+++..-|..  -..+|-+..+..|..+| +|-+
T Consensus       924 ~d~ylg-ae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~G-sIG~ 1000 (1096)
T KOG1897|consen  924 DDTYLG-AENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNG-SIGI 1000 (1096)
T ss_pred             CceEEe-ecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccc-eEEE
Confidence            655554 55677777765543                   333444443333444  24456555677777777 4543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.05  E-value=5.4e-08  Score=87.66  Aligned_cols=236  Identities=8%  Similarity=0.003  Sum_probs=151.0

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE-EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI-MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW  180 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  180 (764)
                      .-.+|+.++..|...+|...+.+.+.   .....+...+...- .....  -.+..++.|.++++.+++-+..-......
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~---~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHL---YQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEeccccceeeeecccCcccce---eeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence            45689999999999999998776532   22222222111110 11111  24777888888888887644332222221


Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-e-EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-E-LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~-~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      .-.+.++++++|++++++.+....|..|.+.... . +..........-.+.+|+.... .+|++..||++.|||++...
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence            2337899999999999999999999999987543 2 2323344455668889998887 89999999999999998763


Q ss_pred             ee----eeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEe---ccCCC-CCCeeEEEecCCCE
Q 004270          259 LQ----SVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHS-APPLCIRFYANGRH  328 (764)
Q Consensus       259 ~~----~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~-~~v~~i~~~~~~~~  328 (764)
                      ..    ...+..|.+.+..+.|++.|.  +|+..-.-+.+.+-|++....-..++..   ...|. ..+....|+.++..
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            32    222346899999999998765  4554444567888877665332222111   12233 33777778777766


Q ss_pred             EEEEeCCCcEEEEEee
Q 004270          329 ILSAGQDRAFRLFSVI  344 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~  344 (764)
                      +.+...+. +.-|++.
T Consensus       317 ~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  317 NDVKNELQ-GAEYNIL  331 (344)
T ss_pred             cccccchh-hheeecc
Confidence            66655543 3444443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=3e-09  Score=108.57  Aligned_cols=201  Identities=16%  Similarity=0.249  Sum_probs=149.4

Q ss_pred             ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEcc
Q 004270          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVR  211 (764)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~  211 (764)
                      +....+.++|.+  +-++.++..| +.+.|+...    ..++.+.  .-.|-...|+|.  ..+-++......-.+|++.
T Consensus        25 ~~~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   25 GGFNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             Ccccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence            344566788998  7799998888 777777643    2233222  234555667764  4566666667778899986


Q ss_pred             C--CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270          212 Y--DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       212 ~--~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      .  ...+.-+.++|...|+.+.|.|..+.++++++.|..+..||+++.. ++.... .-...-..+.|+...+.+...+.
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhcc
Confidence            3  4455555677789999999999998899999999999999998864 444444 44456678999887776777777


Q ss_pred             CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeeccc
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      .+.|++||.+.+.   ..+..+++|...++.+.|.. ....+.+++.||+++.||.....
T Consensus       179 g~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             CCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            8889999987664   46667778999999999987 44568899999999999986543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=1.8e-09  Score=102.96  Aligned_cols=170  Identities=17%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      .....+..++.+++++++..+....+++.........+....  ........++.+..+......-.++....+.+|...
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            344556778899999999999998888776554422221000  001122233333333333333344555667777777


Q ss_pred             CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (764)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i  583 (764)
                      .+.+...+.+-..++.++++||+++++++..|..|+|-....--.+..| -||+.-|..++.-++ +.|+++|.|++|++
T Consensus       141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            7777777777799999999999999999999999999888766655554 479999999999865 56899999999999


Q ss_pred             EEcCccceEEEEee
Q 004270          584 WDVILARQIDAIHV  597 (764)
Q Consensus       584 wd~~~~~~~~~~~~  597 (764)
                      ||+.+|+++.++..
T Consensus       220 Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  220 WDITSGKLLDTCDL  233 (390)
T ss_pred             EecccCCcccccch
Confidence            99999999987764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.03  E-value=9.2e-09  Score=98.24  Aligned_cols=170  Identities=12%  Similarity=0.190  Sum_probs=122.2

Q ss_pred             eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       271 v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      ...+..++++++++.+..+....+++++......+++... .-....+.+.|..+......+..-|-+.-+|+....   
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~---  140 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD---  140 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccc---
Confidence            3445567788888888888888888887765433443333 233445566666655555554444444444432211   


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                                                                                .     ....+.-+|-+.++.+
T Consensus       141 ----------------------------------------------------------~-----~~~~~~lGhvSml~dV  157 (390)
T KOG3914|consen  141 ----------------------------------------------------------S-----GRCEPILGHVSMLLDV  157 (390)
T ss_pred             ----------------------------------------------------------c-----cCcchhhhhhhhhhee
Confidence                                                                      0     1112223566899999


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      +++||+++++++..|+.|++-.......+..+.       .+|..-|..+++-++ +.|+++|.|++|++||+.+++.+.
T Consensus       158 avS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  158 AVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             eecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccc
Confidence            999999999999999999999998888888876       499999999999865 459999999999999999999998


Q ss_pred             eEecC
Q 004270          511 RWEVG  515 (764)
Q Consensus       511 ~~~~~  515 (764)
                      ++...
T Consensus       230 t~dl~  234 (390)
T KOG3914|consen  230 TCDLS  234 (390)
T ss_pred             ccchh
Confidence            77654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=5.6e-10  Score=109.85  Aligned_cols=305  Identities=15%  Similarity=0.124  Sum_probs=190.3

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEE----EecCCCCcceEEEE-EeCCeEEEEECC--eEEEEecC---c------eEEEe
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLV----LVGPQLPKKIRALA-SYRDYTFAAYGN--HIAVVKRA---H------QVATW   89 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~----~~~~~~~~~I~~~~-~~~~~~~~a~g~--~i~vw~~~---~------~~~~~   89 (764)
                      +..++.-+..-+-..-|.++.++-    ..+.+|...|++++ ++....|+....  .|++|...   .      ...++
T Consensus       701 Gn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY  780 (1034)
T KOG4190|consen  701 GNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY  780 (1034)
T ss_pred             cchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh
Confidence            334443333333333355554432    23478999999986 556677775533  39999732   1      34558


Q ss_pred             cccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE-eCCCcEEEE
Q 004270           90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-SQEGSLQLW  166 (764)
Q Consensus        90 ~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-~~dg~i~iw  166 (764)
                      +.|+.+|.++.|  +-++++++  ||.|.+||.--+.........-+........|.-+-+.  ..+..| +...+|+++
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~--~iliAgcsaeSTVKl~  856 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR--HILIAGCSAESTVKLF  856 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcc--hheeeeccchhhheee
Confidence            899999999998  45566665  89999999876665221111111122222333322233  334444 788999999


Q ss_pred             eCCCCeEEEEEc-----CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          167 NISTKKKLYEFK-----GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       167 d~~~~~~~~~~~-----~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      |.+.++-..+++     +...-+.+++..+.|+.+|.|-.+|.|.+.|.++|+.+.....- ......++- |..+ .|+
T Consensus       857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaa-psdq-~L~  933 (1034)
T KOG4190|consen  857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAA-PSDQ-ALA  933 (1034)
T ss_pred             ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcC-chhH-HHH
Confidence            999988766664     44567899999999999999999999999999999988766533 222333332 3334 677


Q ss_pred             EEeCCCcEEE-EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec--cCCCCCCe
Q 004270          242 SGASSGVISI-WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPL  318 (764)
Q Consensus       242 sg~~dg~i~i-wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~  318 (764)
                      ....|.++.+ |..-.+....+.+ ....+..-+  -.-|+-|+++...+.+.+|.-.........+..+  ....+..+
T Consensus       934 ~saldHslaVnWhaldgimh~q~k-pppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lT 1010 (1034)
T KOG4190|consen  934 QSALDHSLAVNWHALDGIMHLQDK-PPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLT 1010 (1034)
T ss_pred             hhcccceeEeeehhcCCeeeeccC-CCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccc
Confidence            7778889988 9877776555544 222221111  1236678888888888888422111111111111  23456678


Q ss_pred             eEEEecCCCEEEEEeCCCcEEE
Q 004270          319 CIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                      +++..|-+.-++.|...|.|++
T Consensus      1011 ala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1011 ALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eeeeccccchhhccCCCCceee
Confidence            8888886667778888887765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.01  E-value=9.4e-07  Score=92.57  Aligned_cols=301  Identities=9%  Similarity=0.032  Sum_probs=179.2

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCC----------cce-EEEEEeCCeEEEEECC-eEEEEec--CceEEEec
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP----------KKI-RALASYRDYTFAAYGN-HIAVVKR--AHQVATWS   90 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~I-~~~~~~~~~~~~a~g~-~i~vw~~--~~~~~~~~   90 (764)
                      .++.+.+.+.++.+.-+|.++|+.+.......          ..+ ..+++..+.+|+++.+ .++.+|.  ++.+-+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            35566667778899999999999887653211          011 2355667777777643 5888885  55444432


Q ss_pred             ccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270           91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (764)
Q Consensus        91 ~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~  169 (764)
                      ........-...+..++.++.+|.+.-+|..+++...    ....... .......+|.-....+++++.+|.+..+|..
T Consensus       148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W----~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKW----TVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEee----eecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            2222122223356778888889999999999998732    2222110 0000001121111468888899999999999


Q ss_pred             CCeEEEEEcCCCC-------CeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270          170 TKKKLYEFKGWGS-------SISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       170 ~~~~~~~~~~h~~-------~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l  240 (764)
                      +|+.+........       ....+..+|  .+..+.+++.+|.+..+|..+|+.+.+....   ....+..  ++. .+
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~--~~~-~v  297 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV--DGG-RI  297 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE--ECC-EE
Confidence            9998776542110       011111222  2456777888999999999999987765432   1122222  344 56


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee-
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC-  319 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-  319 (764)
                      +.++.+|.+..+|..+++.+............+...  .+..++.++.||.+.+.|.+++    +.+....-....+.+ 
T Consensus       298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG----~~~~~~~~~~~~~~s~  371 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG----RFVAQQKVDSSGFLSE  371 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCcceeC
Confidence            777889999999999998765443111111222222  2447788889999998876654    333332222222222 


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEe
Q 004270          320 IRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      ..+  .+..|+.++.||.+..++.
T Consensus       372 P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 PVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE--ECCEEEEEeCCceEEEEeC
Confidence            122  3447888999998887763

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=8.8e-09  Score=94.45  Aligned_cols=333  Identities=16%  Similarity=0.248  Sum_probs=195.5

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-----eeeeeecccc------------cCeeEEEEecCCC--EEE
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLM  284 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~~h~------------~~v~~l~~~~~~~--~l~  284 (764)
                      ...|+++.|...|. +|++|...|.|.+|.-+...     ....++ +|.            ..|..+.|..++.  .++
T Consensus        26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            46799999999998 99999999999999765432     222233 443            4678888887653  566


Q ss_pred             EEcCCCcEEEEEecCC------------------CCC---------cee------e-----E-eccCCCCCCeeEEEecC
Q 004270          285 SASADNSIKMWIFDTT------------------DGD---------PRL------L-----R-FRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~------------------~~~---------~~~------~-----~-~~~~h~~~v~~i~~~~~  325 (764)
                      ..+.|.+|++|.+...                  .+.         +++      +     + .-..|...++++.|..|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            6778999999987543                  100         000      0     0 11356667788888888


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      ...++++. |=.|.+|++.-...                                                    ...+.
T Consensus       184 ~et~lSaD-dLrINLWnl~i~D~----------------------------------------------------sFnIV  210 (460)
T COG5170         184 KETLLSAD-DLRINLWNLEIIDG----------------------------------------------------SFNIV  210 (460)
T ss_pred             hheeeecc-ceeeeeccccccCC----------------------------------------------------ceEEE
Confidence            77777654 55588887653222                                                    12222


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccce----e----cCccccccccccCc
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGS----Y----LDMSERSNYAHNGE  476 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~----~----~~~~~~~~~~h~~~  476 (764)
                      |+....+...        ...|++..|+|.. +.+...++.|.|++-|++....-..    +    .........+-...
T Consensus       211 DiKP~nmeeL--------teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS  282 (460)
T COG5170         211 DIKPHNMEEL--------TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS  282 (460)
T ss_pred             eccCccHHHH--------HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence            2222211111        1456777788754 5666778889999999874322110    0    00000011233467


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCC-CeeeeEecC-------------cce---EEEEEeecCCEEEEEeCCCeE
Q 004270          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-------------CSL---VKIVYHRVNGLLATVADDLVI  539 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-------------~~i---~~~~~s~~~~~la~~~~d~~i  539 (764)
                      |..+.|+++|+++++-+. -+|++||.... .++.++..+             ..|   -.+.||.|.+.+.+|+.....
T Consensus       283 ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf  361 (460)
T COG5170         283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF  361 (460)
T ss_pred             hcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence            889999999999988765 68999998743 456665432             122   357788889999999888777


Q ss_pred             EEEEccCC-----eEEEEeecCCC----------CeeEEE-EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE
Q 004270          540 RLFDVVAL-----RMVRKFEGHTD----------RITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA  603 (764)
Q Consensus       540 ~v~d~~~~-----~~~~~~~~h~~----------~i~~l~-~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~  603 (764)
                      -+|-..+.     -.+..+..|..          .|.... ...+.....+.+.+|.+..-.=     ...+.....|..
T Consensus       362 giyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD-----~d~ld~~k~ilh  436 (460)
T COG5170         362 GIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACED-----PDNLDLLKKILH  436 (460)
T ss_pred             eeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceeeccC-----cchhHHHHHHHh
Confidence            77764321     11222222211          111111 1111122344444444332211     122233334677


Q ss_pred             EEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          604 LSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       604 l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ..|+|-.+-+|.+..+.  ++++.
T Consensus       437 ~sWhp~e~svaiaatnn--lfvfs  458 (460)
T COG5170         437 RSWHPFEDSVAIAATNN--LFVFS  458 (460)
T ss_pred             hccCCcccceeeeecCc--eEEEe
Confidence            88999888888887775  66653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.99  E-value=7.9e-09  Score=92.52  Aligned_cols=187  Identities=12%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE------------EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE-EE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKL------------YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TF  219 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~------------~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~  219 (764)
                      .++++..++.+...+.-++.+.            +.+..|.++-.+-+.+--+..++++..||.+.+++.+....+. +.
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i  128 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI  128 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence            4666777776666655444333            3333333333333444446789999999999999977522211 11


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEe-----CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEE
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK  293 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~  293 (764)
                      ...+. .-.+.+....+. ++.++.     .-+..+.|+++..+.+.... .....|.+++-+|..+ .+++|+.||.+.
T Consensus       129 ~~~~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~  205 (319)
T KOG4714|consen  129 PSIHS-GSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG  205 (319)
T ss_pred             ccccc-cccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence            11111 112223333444 333332     23456677765443332222 1223489999888654 777888899999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      +||.+...   .+...+..|..++..+-|+| ++..|+++++||.+.-||..+
T Consensus       206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99988763   45556678999999999999 888999999999999999764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.1e-08  Score=98.66  Aligned_cols=259  Identities=15%  Similarity=0.218  Sum_probs=180.0

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEee
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI  344 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~  344 (764)
                      -|...|+.+... -.+++.+++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            377777776654 3459999999999999953321 223456667789999999999999999999777 9999999987


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      +-....-+....+++                                          ..-|....              .
T Consensus        85 n~DminmiKL~~lPg------------------------------------------~a~wv~sk--------------G  108 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPG------------------------------------------FAEWVTSK--------------G  108 (558)
T ss_pred             ccchhhhcccccCCC------------------------------------------ceEEecCC--------------C
Confidence            654332211110000                                          00000000              0


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+..        ..+..-.+|.+.++|-........+.      ..-|..+|..+.+.+.+..+++....|.|.-|...
T Consensus       109 d~~s~--------IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen  109 DKISL--------IAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             Ceeee--------EEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEeecCC
Confidence            11111        22233456889999876655333222      14799999999999999999999999999999877


Q ss_pred             C------CCeeeeEe----------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-------------
Q 004270          505 G------RDLKSRWE----------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------------  555 (764)
Q Consensus       505 ~------~~~~~~~~----------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-------------  555 (764)
                      .      .+....++          ......++.|+|++..+++-..|..|++++..++++++.+..             
T Consensus       175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y  254 (558)
T KOG0882|consen  175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY  254 (558)
T ss_pred             CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence            3      11222222          236788999999999999999999999999999977655421             


Q ss_pred             -------------------CC-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270          556 -------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV  597 (764)
Q Consensus       556 -------------------h~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  597 (764)
                                         |. ..-+.+.|...|++|+.++.=| |+|.++.++.+++.+.-
T Consensus       255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK  315 (558)
T ss_pred             ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence                               11 1245678999999999998777 99999999998887743

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=1.5e-06  Score=84.46  Aligned_cols=184  Identities=14%  Similarity=0.076  Sum_probs=123.9

Q ss_pred             eEEEEEc-cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC--------Ce
Q 004270          427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD  497 (764)
Q Consensus       427 v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~  497 (764)
                      ...+++. ++ ..++++...+ +.++|..+++.........   ........+.++++++|++.++....        |.
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred             CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC---CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence            6667777 55 5555555544 4555988886544443100   01144678899999999987776643        55


Q ss_pred             EEEEECCCCCeeeeEecCcceEEEEEeecCCEEE-EEeCCCeEEEEEccCCe-------EEEEeecCCCCeeEEEEcCCC
Q 004270          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVALR-------MVRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~d~~i~v~d~~~~~-------~~~~~~~h~~~i~~l~~s~dg  569 (764)
                      |..++.. ++.......-.....++|+|+++.|+ +-+..+.|..|++....       ....+....+..-.+++..+|
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7777776 55554445557788999999999776 45667899999986321       122223223347789999999


Q ss_pred             cEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEc-CCCCeEEEEE
Q 004270          570 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLS-PNMDVLATAH  617 (764)
Q Consensus       570 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~s-p~g~~lat~~  617 (764)
                      ++.++....+.|.++|.. |+++..+..+ ..+++++|. ++.+.|..++
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            988887788999999976 9999999888 569999994 6766666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=4.3e-07  Score=94.45  Aligned_cols=163  Identities=12%  Similarity=0.076  Sum_probs=102.2

Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCE-EEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~-la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      .|.+-|.... ..+.+.... .+....|+|||+. ++..+.   +..|.++|+.+++...... . .+......|+|||+
T Consensus       170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCCC
Confidence            5666565433 334343333 7788999999985 664433   3569999998887654443 2 56677889999998


Q ss_pred             CEEEEEeCC--CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          238 PLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       238 ~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      .++++.+.+  ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++...+..+.+.. .+..
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc
Confidence            566665544  568888988876443 33 2333344568999998776665 3455555555554443322221 1211


Q ss_pred             CCCeeEEEecCCCEEEEEeCC
Q 004270          315 APPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~d  335 (764)
                          ...|+|||+.++..+..
T Consensus       323 ----~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        323 ----NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             ----CceECCCCCEEEEEEcC
Confidence                24899999998876643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.97  E-value=5e-06  Score=75.03  Aligned_cols=136  Identities=17%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .+++.|+..+.+.-.|..+|+++.+-.- ...|.+-+.- -|++++.|+..|.+.+.+.++|.....+..-..-.+ ...
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~  100 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQ  100 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceE
Confidence            5799999999999999999999887543 3444443333 578899999999999999999998888775422222 233


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i  292 (764)
                      ..+++. ++..|+.|++.+..|.++...+...+ ...+...+-+..|....|..+...|.+
T Consensus       101 ~d~~~g-lIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  101 CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             EcCCCc-eEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCceEEEEeccceE
Confidence            456777 99999999999999999998888766 222233334445522334444444443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.95  E-value=9e-07  Score=81.55  Aligned_cols=246  Identities=13%  Similarity=0.166  Sum_probs=128.4

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEecCCCCCceee---EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      ++.+.+|+.||.. .|..|.+-.....  -..++   ...+.....-+.++|+||+..|+.+...|+|++||+... ...
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd--f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDD--FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELF   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCC--chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeE
Confidence            4556778766655 4555655432211  11121   122233344578999999999999999999999998642 222


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      .++...                     .+.                                        ......|..+
T Consensus        79 ~I~p~~---------------------~~~----------------------------------------~d~~~Aiagl   97 (282)
T PF15492_consen   79 VIPPAM---------------------SFP----------------------------------------GDLSDAIAGL   97 (282)
T ss_pred             EcCccc---------------------ccC----------------------------------------Cccccceeee
Confidence            222110                     000                                        0001222223


Q ss_pred             EEccC------CCEEEEEecCCcEEEEECcCC-----cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          431 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       431 ~~s~~------g~~l~~g~~~g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                      .|-+.      ...|++-.-.|.++-|-+..+     +....+.     ....+...|.++.++|..++|+.||....  
T Consensus        98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~--  170 (282)
T PF15492_consen   98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQN--  170 (282)
T ss_pred             EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCC--
Confidence            22221      123444445565655554222     1111211     01235678999999999998888874322  


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeecCCEE--EEEeCCC------eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL--ATVADDL------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  571 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l--a~~~~d~------~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~  571 (764)
                          +.+.   .......+++-..-.+..+.  +...+|+      +-.+|.+-+.+...........|..|..||||+.
T Consensus       171 ----~~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~  243 (282)
T PF15492_consen  171 ----QDGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL  243 (282)
T ss_pred             ----CCcc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence                0000   00001122221111111111  1111111      1123333333322222234577999999999999


Q ss_pred             EEEEeCCCcEEEEEcCccceEEEEeeC
Q 004270          572 LLSSGMDGSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       572 l~s~s~dg~i~iwd~~~~~~~~~~~~~  598 (764)
                      ||+...+|.|.+|++++-++.+.+..+
T Consensus       244 La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  244 LACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEEEEcCCeEEEEecCcchhhcccchh
Confidence            999999999999999998877766543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.95  E-value=1.1e-08  Score=91.57  Aligned_cols=165  Identities=19%  Similarity=0.294  Sum_probs=105.4

Q ss_pred             eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEcCCCCEEEEEEc-----CCe
Q 004270          131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGK  204 (764)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp~~~~la~g~~-----dg~  204 (764)
                      ..+..+.........+..+  +.++++..||.+.+.+.+.-. ..+.+..-...-.+.+....++.+.++.-     -+.
T Consensus        83 ~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             eeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            3333343333333444444  679999999999999875411 11111111111112223334444444321     234


Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVL  283 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l  283 (764)
                      .+.|+++-.+.+..-... ...|++++-+|..++++++|+.||.+.+||.++......+..+|+.+++.+.|+|.. ..|
T Consensus       161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            455555433332222222 235999999998888999999999999999999866665556999999999999954 589


Q ss_pred             EEEcCCCcEEEEEec
Q 004270          284 MSASADNSIKMWIFD  298 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~  298 (764)
                      ++++.||++-.||-.
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.94  E-value=1.1e-06  Score=80.94  Aligned_cols=147  Identities=19%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEE--eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTF--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS  261 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~--~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~  261 (764)
                      .++.+++|++||+-- |..|.|-..+.+-  .+.+.  ..+..-.=+.++||||+. +||.+...|+|+++|+... .+.
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~-~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGS-ELF   78 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccc-eeE
Confidence            367788999888754 5677777665432  22222  222233567899999999 9999999999999998754 334


Q ss_pred             eeeccc------ccCeeEEEEecCC------CEEEEEcCCCcEEEEEecCCC-CCceeeEe---ccCCCCCCeeEEEecC
Q 004270          262 VIREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF---RSGHSAPPLCIRFYAN  325 (764)
Q Consensus       262 ~~~~~h------~~~v~~l~~~~~~------~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~---~~~h~~~v~~i~~~~~  325 (764)
                      .+..++      ..+|..+.|.+..      ..|+.-..+|.++-|-+.... ...+....   ...+...|.++.|+|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            444233      3467778786532      256666778888888765421 12222222   2235779999999999


Q ss_pred             CCEEEEEeCC
Q 004270          326 GRHILSAGQD  335 (764)
Q Consensus       326 ~~~l~s~~~d  335 (764)
                      .+.|+.||..
T Consensus       159 h~LLlVgG~~  168 (282)
T PF15492_consen  159 HRLLLVGGCE  168 (282)
T ss_pred             CCEEEEeccC
Confidence            8888887754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.91  E-value=9.6e-07  Score=92.14  Aligned_cols=178  Identities=10%  Similarity=0.003  Sum_probs=119.6

Q ss_pred             CeEEEEEccCCCEEEEEecC---C-cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          426 AVKACTISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~---g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ....++++++|+++++.+.+   | .+...+.........+.          -..  .-++.++|++...  .++.|.+.
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn----------i~~--iea~vkdGK~~~V--~gn~V~VI  301 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN----------IAR--IEEAVKAGKFKTI--GGSKVPVV  301 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc----------hHH--HHHhhhCCCEEEE--CCCEEEEE
Confidence            44567889999999887632   2 22222221111111110          000  0023446776655  36789999


Q ss_pred             ECCC-----CCeeeeEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeE------------EEEeecCCCCeeEE
Q 004270          502 DFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGHTDRITDF  563 (764)
Q Consensus       502 d~~~-----~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~------------~~~~~~h~~~i~~l  563 (764)
                      |..+     .+.+..+........+.++|||+++++++. +.++.|+|+.+.+.            +.+.+--.+ -...
T Consensus       302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHT  380 (635)
T PRK02888        302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHT  380 (635)
T ss_pred             ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceE
Confidence            9998     577888888899999999999998887765 88999999988652            444443233 3467


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcCc----------cceEEEEeeCCceEEEEE------cCCCCeEEEEEe
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHV  618 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~v~~l~~------sp~g~~lat~~~  618 (764)
                      +|.++|....|-..|..|..|++.+          ...++.+..|..+-.+.-      .|||++|++...
T Consensus       381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            8999998888888999999999987          345666666655444444      689999988754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=5.4e-08  Score=89.42  Aligned_cols=246  Identities=15%  Similarity=0.245  Sum_probs=151.9

Q ss_pred             ccceEEEEEe--CCEEEEEecCCcEEEEEccCCcc--------------cccceeeEecCCccccEEEEeCCCCCCEEEE
Q 004270           93 SAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEE--------------NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV  156 (764)
Q Consensus        93 ~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~  156 (764)
                      ...|+++.++  |.||++|+..|.|.++.-+....              ...-+..++........-.+.+.+ .+.++.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~-r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG-RNHFLL  104 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC-cceEEE
Confidence            3445566654  55666666666666665443220              000011222222222222344444 367888


Q ss_pred             EeCCCcEEEEeCCCCe--E-----------------------------------E-----EEE-cCCCCCeEEEEEcCCC
Q 004270          157 GSQEGSLQLWNISTKK--K-----------------------------------L-----YEF-KGWGSSISSCVSSPAL  193 (764)
Q Consensus       157 ~~~dg~i~iwd~~~~~--~-----------------------------------~-----~~~-~~h~~~i~~~~~sp~~  193 (764)
                      .+.|.+|++|.+....  .                                   +     +.. ..|.-.|.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8899999999774320  0                                   0     011 3566778889999998


Q ss_pred             CEEEEEEcCCeEEEEEccCCceEE---EEeccC----CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee-----
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELV---TFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----  261 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~---~~~~~~----~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~-----  261 (764)
                      ..++++. |-.|.+|++.--..-.   .++.+.    ..-|++..|+|....++.-.+..|.|++-|++...+.-     
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8887754 5789999987433222   222210    23588999999876677777889999999998442210     


Q ss_pred             -eee---------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC------------CCC--
Q 004270          262 -VIR---------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS------------APP--  317 (764)
Q Consensus       262 -~~~---------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~------------~~v--  317 (764)
                       ...         .+-...|..+.|+++|+++++-+. .++++||++....   ++.+..-|.            ..|  
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---PIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---CceeechHHHHHHHHHhhhhccceee
Confidence             000         122457889999999999887654 6899999887653   333333331            122  


Q ss_pred             -eeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          318 -LCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       318 -~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                       ..+.|+.|.+.+++|+.....-+|-+.
T Consensus       340 kFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         340 KFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecCCcccccccccccceeeeccc
Confidence             457788899999999988888887643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=2.9e-05  Score=70.23  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  181 (764)
                      -|++++.|+..|.+.+-+.++++.    +..+...+.......+.+++  ..++.|+.|++.+..|.++..+++..+...
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence            588899999999999999999977    44444444555556677888  789999999999999999999999988755


Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~  213 (764)
                      +...+-+..|-..-|..+...|.|.--+.+.+
T Consensus       136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            55555566663334555555677766665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=4.4e-06  Score=81.13  Aligned_cols=217  Identities=14%  Similarity=0.094  Sum_probs=138.4

Q ss_pred             CCeEEEEecCCCeEEEecCCC--CcceEEEEE-eCCeEEEEECC-eEEEEec--CceEEEecccccceEEEEEeCCEEEE
Q 004270           35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYGN-HIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS  108 (764)
Q Consensus        35 ~~~i~iwd~~~~~~~~~~~~~--~~~I~~~~~-~~~~~~~a~g~-~i~vw~~--~~~~~~~~~h~~~v~~l~~~g~~l~s  108 (764)
                      +++|..||..+++.+....--  .....+.++ .....|++.++ .++.||.  ++.+-+..............+..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            578999999999999877321  222333244 66677777544 4999995  66555543311111113567888888


Q ss_pred             EecCCcEEEEEccCCcccccceeeEecCC---ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--
Q 004270          109 IDIDGNMFIWAFKGIEENLAPVGHVKLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--  183 (764)
Q Consensus       109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--  183 (764)
                      ++.++.+..+|..+++.....   .....   ...........+  +.++++..++.|..+|+++|+.+.........  
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSI---YLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEE---EE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             ccceeeeEecccCCcceeeee---ccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            888999999999999883321   11111   111222222234  67999998999999999999999988764422  


Q ss_pred             --------eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          184 --------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       184 --------i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                              +..-....++ .+..+..+|.+.-+|+.+++.+....   ...+..+ ...++. .|+.++.++.|..||++
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCT-EEEEEETTTEEEEEETT
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCC-EEEEEeCCCEEEEEECC
Confidence                    1222233344 77777777754444999999775333   2223331 345566 67777789999999999


Q ss_pred             Cceeeee
Q 004270          256 KRRLQSV  262 (764)
Q Consensus       256 ~~~~~~~  262 (764)
                      +++.+..
T Consensus       231 tG~~~W~  237 (238)
T PF13360_consen  231 TGKVVWQ  237 (238)
T ss_dssp             TTEEEEE
T ss_pred             CCCEEeE
Confidence            9987643

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.83  E-value=3.3e-06  Score=81.98  Aligned_cols=220  Identities=19%  Similarity=0.172  Sum_probs=139.3

Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEE-EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS  190 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s  190 (764)
                      +|+|..||..+++.    +-............ ...+++  +.+++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus         2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence            68889999988887    44444322122222 133344  5788889999999999999999998876 33322222 2


Q ss_pred             CCCCEEEEEEcCCeEEEEEccCCceEEEE-eccC--CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 004270          191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH  267 (764)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~--~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h  267 (764)
                      .++..+++++.++.+..+|..+|+.+.+. ....  ......+....++. .++.+..++.|..+|+++|+.+..... .
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~  151 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G  151 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence            34556777788899999999999999885 3221  11122333333355 677888899999999999999888773 3


Q ss_pred             ccC----------eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       268 ~~~----------v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      ...          +..-....++ .++.++.++.+..+|+.++.    .+-...  ...+.. ....++..++.++.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred             CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence            322          1122222344 67777777753333666552    222211  111111 13457778888889999


Q ss_pred             EEEEEeeccccc
Q 004270          338 FRLFSVIQDQQS  349 (764)
Q Consensus       338 i~i~d~~~~~~~  349 (764)
                      +..||+.+++..
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            999999887654

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=8.5e-08  Score=92.75  Aligned_cols=275  Identities=14%  Similarity=0.113  Sum_probs=180.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC--CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCC
Q 004270          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEK  256 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~  256 (764)
                      |...|+.+..+. .+++.+++.||.++.|--..  |-........|.+.|.+++.+-+|. ++.+.+. |..++++|+++
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEeec
Confidence            677777776665 47999999999999997442  2222222233467899999999998 8888776 99999999988


Q ss_pred             ceeeeeeecccccCeeEEEE--ecCCC--EEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          257 RRLQSVIREAHDNAIISLHF--FANEP--VLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       257 ~~~~~~~~~~h~~~v~~l~~--~~~~~--~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      -.....++.  ......+.|  ++...  .++ +.-.++.+.++|-.  .........-.-|..+|.++.+.+-+..+++
T Consensus        86 ~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   86 FDMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             cchhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEEeeccccceee
Confidence            766655541  111222233  22211  233 33346778887533  3333444555679999999999999999999


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ....|.|..|.....-   .+....                                              ..|.+..  
T Consensus       162 iD~~gmVEyWs~e~~~---qfPr~~----------------------------------------------l~~~~K~--  190 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPF---QFPRTN----------------------------------------------LNFELKH--  190 (558)
T ss_pred             ccccceeEeecCCCcc---cCcccc----------------------------------------------ccccccc--
Confidence            9999999999876310   000000                                              0011100  


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc-----------------------
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-----------------------  468 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-----------------------  468 (764)
                        +.-+-.........+++.++|+|..+..-..|..|++++..+|...+.+......                       
T Consensus       191 --eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmave  268 (558)
T KOG0882|consen  191 --ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVE  268 (558)
T ss_pred             --cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHH
Confidence              0111111233477889999999999999999999999999999887766432211                       


Q ss_pred             -ccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 004270          469 -SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV  514 (764)
Q Consensus       469 -~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  514 (764)
                       .+..|.. .-+.+.|+..+++|+-++-= -|++.++.+++..+.+.-
T Consensus       269 relek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  269 RELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGK  315 (558)
T ss_pred             hhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEecc
Confidence             1112222 34567888889999888763 488999999887776643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.81  E-value=3.8e-05  Score=74.34  Aligned_cols=296  Identities=11%  Similarity=0.126  Sum_probs=168.8

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEccCCceEEEEeccCCCC----
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA----  226 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~----  226 (764)
                      +.+.++|.++++.+-.+..  +-.-.+..||+++.+++++          ..-.|.+||..+-.....+..+.+..    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4699999999998888764  3334577899999888753          23469999999998888776553211    


Q ss_pred             --EEEEEEeeCCCCEEEEE--eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270          227 --VTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       227 --v~~l~fs~d~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                        ...++++.||+ +++..  +-...|.|-|+..++.+..+.  -.+ +..+--+++ ..+.+.+.||++.-..++....
T Consensus        95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEID--TPG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEE--GTS-EEEEEEEET-TEEEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeec--CCC-EEEEEecCC-CceEEEecCCceEEEEECCCCC
Confidence              23467888998 55443  345679999999999988876  222 222222222 3578888999999998886543


Q ss_pred             Ccee-eEeccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          303 DPRL-LRFRSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       303 ~~~~-~~~~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      ..+. ...+.....++. .-++...+..++-.+..|.|+-.|+........-+-.......+                  
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~------------------  231 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK------------------  231 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH------------------
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc------------------
Confidence            2211 112222223332 33445555566667888888888876543211100000000000                  


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                      -...|...| ++++.+...+.+++.- .....+.        |+.+                  .-.|.+||+.+++.+.
T Consensus       232 ~~~WrPGG~-Q~~A~~~~~~rlyvLM-h~g~~gs--------HKdp------------------gteVWv~D~~t~krv~  283 (342)
T PF06433_consen  232 ADGWRPGGW-QLIAYHAASGRLYVLM-HQGGEGS--------HKDP------------------GTEVWVYDLKTHKRVA  283 (342)
T ss_dssp             HTTEEE-SS-S-EEEETTTTEEEEEE-EE--TT---------TTS-------------------EEEEEEEETTTTEEEE
T ss_pred             ccCcCCcce-eeeeeccccCeEEEEe-cCCCCCC--------ccCC------------------ceEEEEEECCCCeEEE
Confidence            001111111 3344444444444421 1111111        1110                  1157888999999888


Q ss_pred             eecCccccccccccCcEEEEEECCCCC-EEEEE-eCCCeEEEEECCCCCeeeeEecCcce
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIKVWDFKGRDLKSRWEVGCSL  518 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i  518 (764)
                      .+.         -...+.+|+++.+.+ +|++. ..++.+.+||..+++.++.++.-+.-
T Consensus       284 Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~  334 (342)
T PF06433_consen  284 RIP---------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET  334 (342)
T ss_dssp             EEE---------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred             EEe---------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence            874         234577899998775 55554 45799999999999999988755443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.79  E-value=2.5e-05  Score=75.99  Aligned_cols=192  Identities=15%  Similarity=0.094  Sum_probs=123.5

Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270          143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFTH  221 (764)
Q Consensus       143 ~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~  221 (764)
                      .++.+... ..+++-...+.|..|+..+++... +....  ...+++. +++ .++++...+ +.++|..+++.......
T Consensus         5 p~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    5 PVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             eEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            45666331 345555568889999988876544 33222  6677777 664 555556544 56669988865444443


Q ss_pred             --c--CCCCEEEEEEeeCCCCEEEEEeCC--------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcC
Q 004270          222 --S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASA  288 (764)
Q Consensus       222 --~--~~~~v~~l~fs~d~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~  288 (764)
                        .  .......+++.++|+ +.++....        |.|..++.. ++......  .-...+.++|+|+++.|+ +-+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence              1  245788999999998 66665533        568888877 55444433  455678999999998765 5566


Q ss_pred             CCcEEEEEecCCCCCc---eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          289 DNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .+.|..++++......   +....+....+.+-.+++..+|+..++....+.|.+++..
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            7888888887554321   2222222223347889999999888877778888888864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=2.7e-08  Score=92.86  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=124.0

Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----CeeeeEecCcc
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCS  517 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~  517 (764)
                      +.+-.+-+-|+.+|.... |         ...+.|.++.|...+.++..|...|.|...|++.+     .+...+-+++.
T Consensus       231 G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss  300 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS  300 (425)
T ss_pred             cccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence            344567777887765432 1         45678888999988899999999999999999854     56777888899


Q ss_pred             eEEEEEee-cCCEEEEEeCCCeEEEEEccCCeE---EEEeecCCCCeeEE--EEcCCCcEEEEEeCCCcEEEEEcCccce
Q 004270          518 LVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       518 i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~---~~~~~~h~~~i~~l--~~s~dg~~l~s~s~dg~i~iwd~~~~~~  591 (764)
                      ++++..-. ++.+|.+.+.+|+|.+||++--++   +.+++||...-.-+  ...+....+++++.|...|||.+.+|.+
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            99998877 788999999999999999987777   99999997544333  3456677899999999999999999999


Q ss_pred             EEEEeeCCc-----eEEEEEc
Q 004270          592 IDAIHVDVS-----ITALSLS  607 (764)
Q Consensus       592 ~~~~~~~~~-----v~~l~~s  607 (764)
                      +.+++.+..     +.+++|.
T Consensus       381 l~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  381 LCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeccCCCCccccccccceehh
Confidence            999887553     4555554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.75  E-value=4.6e-06  Score=79.64  Aligned_cols=197  Identities=12%  Similarity=0.147  Sum_probs=144.7

Q ss_pred             CCeEEEEEcc-CCCEEEEEecCC-cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-----CCCe
Q 004270          425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGD  497 (764)
Q Consensus       425 ~~v~~~~~s~-~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-----~dg~  497 (764)
                      .....++.+| .+..++.+-.-| ...+||..++.....+.....+-+.+|      -+|++||++|++.-     ..|.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence            4456678888 566777787777 677899999999888765555555555      47999999999864     3588


Q ss_pred             EEEEECC-CCCeeeeEecC-cceEEEEEeecCCEEEEEeC------------------CCeEEEEEccCCeEEEE--e--
Q 004270          498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F--  553 (764)
Q Consensus       498 v~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------d~~i~v~d~~~~~~~~~--~--  553 (764)
                      |-|||.. +-+.+.++..+ -....+.+.|||+.|+++..                  +.++...|..+|+++.+  +  
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999999 56667777655 45677889999988887642                  33677778889998877  4  


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeCCC-------cEEEEEcCccceEEEEee--------CCceEEEEEcCCCCeEEEEEe
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~--------~~~v~~l~~sp~g~~lat~~~  618 (764)
                      .-|...|..+++.++|..++..-..|       -|-+++  .++.+..+..        ..-+-+++++++|.++++++-
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            33788899999999998766544333       233333  2333333332        334899999999999999988


Q ss_pred             CCCeEEEEecc
Q 004270          619 DQNGVYLWVNR  629 (764)
Q Consensus       619 d~~~i~lW~~~  629 (764)
                      -++.+.+|+..
T Consensus       237 rGg~~~~~d~~  247 (305)
T PF07433_consen  237 RGGRVAVWDAA  247 (305)
T ss_pred             CCCEEEEEECC
Confidence            88789999764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.74  E-value=1.8e-06  Score=90.24  Aligned_cols=328  Identities=9%  Similarity=0.033  Sum_probs=179.4

Q ss_pred             EEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC--------CEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL--------NKVIVGSQEGSLQLWNISTKKKLYEF  177 (764)
Q Consensus       106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~  177 (764)
                      +.|++..|.|+|+-+.+..+    +..+.         +|+|+...        +.++..+..|....|.          
T Consensus        69 f~SgG~sG~~~v~G~PSmr~----l~~ip---------vf~~~~~~G~G~~~esk~~l~~~~~~~~~~~g----------  125 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRE----LMRIP---------VFNRDSATGWGITNESKKVLGEGARGGKYLNG----------  125 (635)
T ss_pred             EeeCCccceEEEEecCCcce----EEEee---------eecCCCCcccCCchhHHHHhhccccCCcccCC----------
Confidence            67888899999999999887    44443         23332210        2233222112222221          


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEE-------------------EeeCCC
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALA-------------------FSSDGQ  237 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~-------------------fs~d~~  237 (764)
                      ..|.-.++.-.=..||++|.+-.. +.+|-..+++..++-..+..+....+..++                   ++|||+
T Consensus       126 D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk  205 (635)
T PRK02888        126 DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK  205 (635)
T ss_pred             CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence            112211221122347888887664 456666666654443333322222233333                   345665


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc--EEEEEecCCCCCceeeEeccCCCC
Q 004270          238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--IKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~--i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      .+..+.-..+.+.+.|.++.+...++.  -.+....++++++++++++.+.+..  ..+-.++..+..  .+..+..  .
T Consensus       206 ~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni--~  279 (635)
T PRK02888        206 DLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNI--A  279 (635)
T ss_pred             EeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEch--H
Confidence            232333345678888888887777776  2335577889999999888863221  111111211111  0000000  0


Q ss_pred             CCeeEEEecCCCEEEEEeCCCcEEEEEeec-----ccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      .  .-++.++|++...  .++.|.+.|..+     ......+                                      
T Consensus       280 ~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI--------------------------------------  317 (635)
T PRK02888        280 R--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV--------------------------------------  317 (635)
T ss_pred             H--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE--------------------------------------
Confidence            0  0023346666555  256688888664     1111111                                      


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceec-Ccccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYL-DMSER  468 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~-~~~~~  468 (764)
                                                     .-......+.++|||+++++++. +.++.++|+.+.+....-. .+...
T Consensus       318 -------------------------------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        318 -------------------------------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             -------------------------------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence                                           11256778999999999887665 7899999998765311000 00000


Q ss_pred             --ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC----------CCeeeeEecCcceEEEEE------eecCCEE
Q 004270          469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----------RDLKSRWEVGCSLVKIVY------HRVNGLL  530 (764)
Q Consensus       469 --~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~i~~~~~------s~~~~~l  530 (764)
                        ....-...-...+|+++|....|...|..|-.|++..          ...+..+..+..+-.+..      .+||++|
T Consensus       367 vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l  446 (635)
T PRK02888        367 VVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWL  446 (635)
T ss_pred             EEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEE
Confidence              0001133445678999999888888999999999876          345555666655555555      6789999


Q ss_pred             EEEeC
Q 004270          531 ATVAD  535 (764)
Q Consensus       531 a~~~~  535 (764)
                      ++...
T Consensus       447 ~~~nk  451 (635)
T PRK02888        447 VSLNK  451 (635)
T ss_pred             EEccc
Confidence            88743

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=3.7e-08  Score=63.93  Aligned_cols=39  Identities=41%  Similarity=0.868  Sum_probs=37.1

Q ss_pred             CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ++++.++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.73  E-value=6.4e-06  Score=79.59  Aligned_cols=272  Identities=13%  Similarity=0.183  Sum_probs=153.3

Q ss_pred             CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCceeeEeccC----
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG----  312 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~----  312 (764)
                      +.+.++|..+++.+..+..+..   -.+..+|+++.+++++          ..-.|.+||..+-.....+. ...+    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence            4799999999999999884443   3466799999888754          23468899876653221111 1111    


Q ss_pred             CCCCCeeEEEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          313 HSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      .......++++.|+++++...  --.+|.+.|+...+...++..+                                   
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------------------------------  137 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------------------------------  137 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence            112334556777777766542  3345666666655544443221                                   


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECc-CCcccceecCcccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER  468 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~  468 (764)
                                                        +   |..+-|. .+-+..-+.||.+.-+.+. .|+.......   .
T Consensus       138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~  177 (342)
T PF06433_consen  138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK---V  177 (342)
T ss_dssp             ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE---E
T ss_pred             ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc---c
Confidence                                              0   1111111 1335556667777666665 3333211100   0


Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eEec-----------CcceEEEEEeecCCEEEEEeC
Q 004270          469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       469 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~~  535 (764)
                      ....+..-...-+++..+..++-.+.+|.|+--|+.......  .+..           .+.-.-+++++..+.|.+-..
T Consensus       178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh  257 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH  257 (342)
T ss_dssp             SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred             cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence            001111112223344445556557788888888887664322  2211           134455788877666655432


Q ss_pred             C----------CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEE-eCCCcEEEEEcCccceEEEEeeC
Q 004270          536 D----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       536 d----------~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~  598 (764)
                      .          ..|.++|+.+++.+.++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|++++.+..-
T Consensus       258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             E--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            1          2688999999999999874 24688999999876 56544 46899999999999999988753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.9e-06  Score=82.60  Aligned_cols=166  Identities=11%  Similarity=0.122  Sum_probs=115.5

Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      +++.+..+.+...-+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+  ..+.+++|.-|..+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence            67777666777777788999999999999887 7888999999999999999999888875  78999999999998999


Q ss_pred             EEeCCCcEEEEECCCceeee-eee-cccccCeeEEEEe------cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC
Q 004270          242 SGASSGVISIWNLEKRRLQS-VIR-EAHDNAIISLHFF------ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH  313 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~-~~~-~~h~~~v~~l~~~------~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (764)
                      .|..+|.|.+||++..+-.. .+. .-...+|..++..      +.+.+|+..+.+  +..|++....+.+.++..+ +.
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EP  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CC
Confidence            99999999999998653221 111 0122344444443      334455544433  5677665554433332222 34


Q ss_pred             CCCCeeEEEecCCCEEEEEe
Q 004270          314 SAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~  333 (764)
                      .+...++.+++-.++++...
T Consensus       330 pG~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             CcceeeeeecCccceEEEEe
Confidence            55666777777555555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=9.1e-07  Score=92.34  Aligned_cols=181  Identities=14%  Similarity=0.169  Sum_probs=137.6

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+++++++  +++++.|+.+|.|++++.+... ...+         .|...      +-+|.+++||+.||+|.|-.+-
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence            344455554  6899999999999999987554 2222         34333      6689999999999999999999


Q ss_pred             CCCeeeeEecCcceEEEEEeec-----CCEEEEEeCCCeEEEEEccCC--eEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~d~~i~v~d~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +.+....+..+.++.+++++|+     .+.+++|+.-| +.++.-.=.  +.-..+..-.++|.++.|.  |.++|-++.
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence            9999999999999999999998     57889998888 777653211  1111355567899999995  779998887


Q ss_pred             CCcEEEEEcCccceEEEEeeCCc-------eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       578 dg~i~iwd~~~~~~~~~~~~~~~-------v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      +| |+|||+.+++.+..++.+..       ...+.|.++. .|+.|=.|  +|++-.++.
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIKK  234 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEec
Confidence            77 99999999998887765432       5678887664 45566556  488888873

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.66  E-value=4.5e-05  Score=72.98  Aligned_cols=243  Identities=18%  Similarity=0.200  Sum_probs=149.2

Q ss_pred             eEEEEEcC-CCCEEEEEEcCCe-EEEEEccCCceEEEEeccCCCC--EEEEEEeeCCCCEEEEE-----eCCCcEEEEEC
Q 004270          184 ISSCVSSP-ALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSMRGA--VTALAFSSDGQPLLASG-----ASSGVISIWNL  254 (764)
Q Consensus       184 i~~~~~sp-~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~--v~~l~fs~d~~~~l~sg-----~~dg~i~iwd~  254 (764)
                      ...++.+| ....++.+-.-|+ ..+||..+++....+... .+.  .-.-.|++||+ +|++.     +..|.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEEC
Confidence            34678888 5567777776664 789999999988877654 222  22578999999 55554     24589999999


Q ss_pred             C-CceeeeeeecccccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCc--------eeeEe--c--cCCC
Q 004270          255 E-KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDP--------RLLRF--R--SGHS  314 (764)
Q Consensus       255 ~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~--------~~~~~--~--~~h~  314 (764)
                      . +.+.+..+. .|.-....+.+.||++.|+.+..       .|..++ ++++.....        .++..  +  .-|.
T Consensus        85 ~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   85 ARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             cCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            8 557777776 67667788999999987777642       133333 223222111        22221  2  2366


Q ss_pred             CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      ..+..+++.++|..++..-..|.-.                                                +..-++.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~------------------------------------------------~~~PLva  194 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPG------------------------------------------------DAPPLVA  194 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCC------------------------------------------------ccCCeEE
Confidence            6777788777775444433222100                                                0011222


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAH  473 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h  473 (764)
                      .+..+..+..........        ......+-+++++++|.++++.+- .|.+.+||..++..+....          
T Consensus       195 ~~~~g~~~~~~~~p~~~~--------~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------  256 (305)
T PF07433_consen  195 LHRRGGALRLLPAPEEQW--------RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------  256 (305)
T ss_pred             EEcCCCcceeccCChHHH--------HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------
Confidence            232222233222221110        012378999999999998866665 5689999999999887643          


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCeE
Q 004270          474 NGEVVGVACDSTNTLMISAGYHGDI  498 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~dg~v  498 (764)
                      -..+.+++..+++ ++++.+. |.+
T Consensus       257 l~D~cGva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  257 LPDACGVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             cCceeeeeecCCc-eEEeCCC-ccE
Confidence            3457778877776 5666554 443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=3.8e-08  Score=102.83  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC-cE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VI  249 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg-~i  249 (764)
                      .+...+|..|....+|++|+-+.+.|++|+..|.|+++++.+|........| +.+|+-+.-+.||...|.+++... ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchH
Confidence            3455677888999999999999999999999999999999999998888776 889999999999994444444443 57


Q ss_pred             EEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       250 ~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      .+|++.+ +...+.+.     .-.++.|+.....-+.|.......+||+.+.......+.-..+....-++..|+|+..+
T Consensus      1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            8999864 23333333     34577887765444445444568899988775332322222233334478889998877


Q ss_pred             EEEEeCCCcEEEEEeecccccccc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSREL  352 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~  352 (764)
                      ++-   ||  .+||++..+.+..+
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhh
Confidence            764   66  47998776544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=0.00024  Score=78.44  Aligned_cols=276  Identities=12%  Similarity=0.101  Sum_probs=166.8

Q ss_pred             CCCcceEEEEEeCCeEEEEECCe-----EEEEec---Cc---eEEE--ecccccceEEEEE--eCCEEEEEecCCcEEEE
Q 004270           54 QLPKKIRALASYRDYTFAAYGNH-----IAVVKR---AH---QVAT--WSRHSAKVNLLLL--FGEHILSIDIDGNMFIW  118 (764)
Q Consensus        54 ~~~~~I~~~~~~~~~~~~a~g~~-----i~vw~~---~~---~~~~--~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vW  118 (764)
                      .|++.-.+...+|...+++++..     +..+..   ++   ....  ...-.+.|.++.+  +++.++.+..+|.|.+-
T Consensus        16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilv   95 (1265)
T KOG1920|consen   16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILV   95 (1265)
T ss_pred             CCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEE
Confidence            34444566777788888888733     333322   22   1111  1223358888887  78889999999999998


Q ss_pred             EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC----CC-------------------CeEEE
Q 004270          119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKLY  175 (764)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~----~~-------------------~~~~~  175 (764)
                      |.++...     .....-...+..+.++|+.  ..++..+..+++.+-.-    -.                   |+.-.
T Consensus        96 d~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT  168 (1265)
T KOG1920|consen   96 DPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET  168 (1265)
T ss_pred             cccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce
Confidence            8777654     2222345566777899999  78888888787766432    01                   11111


Q ss_pred             EEcCC---------------------CCCeEEEEEcCCCCEEEEE-----EcCCeEEEEEccCCceEEEEeccCCCCEEE
Q 004270          176 EFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVTA  229 (764)
Q Consensus       176 ~~~~h---------------------~~~i~~~~~sp~~~~la~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  229 (764)
                      .|+|.                     .+.=+.+.|--||+++|+.     .....|++||-+ | .+........+.-.+
T Consensus       169 qfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~  246 (1265)
T KOG1920|consen  169 QFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHS  246 (1265)
T ss_pred             eeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccc
Confidence            22211                     1122458899999999983     233789999966 3 333333333455678


Q ss_pred             EEEeeCCCCEEEEEe---CCCcEEEEECCCc---eeeeeeecccccCeeEEEEecCCCEEEE---EcCCCcEEEEEecCC
Q 004270          230 LAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDTT  300 (764)
Q Consensus       230 l~fs~d~~~~l~sg~---~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s---~~~d~~i~vw~~~~~  300 (764)
                      ++|-|.|. ++++-.   .|+.|.++.-+.-   ....... .....|..++|+.++..|++   ......|++|-+..-
T Consensus       247 LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  247 LSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            99999998 666643   4667999984322   1111122 23344999999999998887   444455999965432


Q ss_pred             CCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~  344 (764)
                        .+.+...+.-.....  +.|+| ....+..-..+|...+++..
T Consensus       325 --hWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  325 --HWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             --EEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence              222222222222222  78888 33344444467777776653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.62  E-value=5.8e-06  Score=85.37  Aligned_cols=197  Identities=19%  Similarity=0.247  Sum_probs=123.5

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce---
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---  215 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~---  215 (764)
                      +.-.++.-..  .+++.|+.-|.+++|+-..++... ...+-.+.+..+..|++..++|.|+..|.|.++-+..+..   
T Consensus        36 v~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3334445555  689999999999999966655433 2333456677788999999999999999999998876432   


Q ss_pred             --EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          216 --LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       216 --~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                        +..+...|+..|++++|++++. .+++|...|.|.+-.+...    .....+. .-.+.|..+.+.. +.+|++.. -
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl-~  189 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTL-T  189 (726)
T ss_pred             eeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhh-h
Confidence              2223333578999999999999 8999999999999888772    1111222 3456777777653 33343333 2


Q ss_pred             CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC----CCEEEEEeCCCcEEEEEeecc
Q 004270          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      +. .+++.+..+  .+.+.......-.-...+|.|.    .+-.+.++.-| .|+|...-.
T Consensus       190 r~-~Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~  246 (726)
T KOG3621|consen  190 RC-ILCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFA  246 (726)
T ss_pred             hh-heeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecc
Confidence            22 233333221  1111111111112345566664    44566666666 788877543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=0.00019  Score=77.13  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=110.2

Q ss_pred             EEEEccCCCEEEEEecCC------------------cEEEEECcCCcccceecCccccc--cccccCcE-EEEEECCCCC
Q 004270          429 ACTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT  487 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~g------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~~~~~~  487 (764)
                      +.++.+.+..+++++.++                  .+.-+|..+|+.+-.+.......  .......+ ..+. .-++.
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~  299 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK  299 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence            345666778888887765                  79999999999988764211000  00111111 1111 11332


Q ss_pred             ---EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE------------------eCCCeEEEEEccC
Q 004270          488 ---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVA  546 (764)
Q Consensus       488 ---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~d~~i~v~d~~~  546 (764)
                         .++.++.+|.+...|..+++.+.......  ..++.+|  ..+.++                  ..+|.+.-+|+.+
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence               57778889999999999999888765431  1123333  333332                  2367888999999


Q ss_pred             CeEEEEeecCC--------CCe--eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE--EEEcCCCC
Q 004270          547 LRMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD  611 (764)
Q Consensus       547 ~~~~~~~~~h~--------~~i--~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~--l~~sp~g~  611 (764)
                      ++.+-+.....        .+.  ..+..  .+..|+.++.||.|+.+|..+|+.+..++....+.+  +.+..+|+
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~  450 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK  450 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence            98877765331        111  12222  456788889999999999999999999887665433  23344553

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.60  E-value=4.7e-05  Score=81.75  Aligned_cols=194  Identities=13%  Similarity=0.143  Sum_probs=114.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC------eE--EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS------IS--SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM  223 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~------i~--~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~  223 (764)
                      +.+++++.++.|.-.|.++|+.+.+++.....      +.  .++.. ++..+++++.+|.|.-+|.++|+.+.++....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            47888988999999999999999887653320      10  01111 22678888899999999999999998887542


Q ss_pred             CC----CE-EEEEEeeCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccccc-------------------C
Q 004270          224 RG----AV-TALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A  270 (764)
Q Consensus       224 ~~----~v-~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~h~~-------------------~  270 (764)
                      ..    .+ .+..+. ++  +++.++         .+|.+..+|..+|+.+.........                   .
T Consensus       141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            11    01 112222 23  455553         3678999999999988877632111                   0


Q ss_pred             e-eEEEEecCCCEEEEEcCCC------------------cEEEEEecCCCCCceeeEeccCCCC----CCeeEEEe----
Q 004270          271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY----  323 (764)
Q Consensus       271 v-~~l~~~~~~~~l~s~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~----  323 (764)
                      + ....+.+.+..++.++.++                  .+.-+|..+++..+.  .....|..    ......+.    
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEeccc
Confidence            1 1234444556777776555                  465555554432221  11111211    00111111    


Q ss_pred             cCCC---EEEEEeCCCcEEEEEeeccccccc
Q 004270          324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       324 ~~~~---~l~s~~~dg~i~i~d~~~~~~~~~  351 (764)
                      -++.   .++.++.+|.+..+|..+++..-.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            1333   567778889999999888765544

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.3e-06  Score=81.99  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC-
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-  326 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-  326 (764)
                      +++.+..+.+....+. .|...|.+++|+|..+ ++..++.++.|++.|+++.    ..+.....| ..+.+++|.-|. 
T Consensus       175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----~~vssy~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----CVVSSYIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccc----eeeeheecc-CCceeeeeccCCc
Confidence            5666655555555444 7888999999999877 7888999999999999887    344444455 889999999855 


Q ss_pred             CEEEEEeCCCcEEEEEeeccc
Q 004270          327 RHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      ++|+.|-..|.|.+||++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC
Confidence            556677788999999987654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=2.3e-07  Score=60.09  Aligned_cols=39  Identities=41%  Similarity=0.536  Sum_probs=37.3

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      +++++++++|.+.|.+++|+|++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            478899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.57  E-value=3.7e-05  Score=79.02  Aligned_cols=304  Identities=10%  Similarity=0.050  Sum_probs=154.5

Q ss_pred             cCCCCEEEEEE---------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270          190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (764)
Q Consensus       190 sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~  260 (764)
                      |||+++++...         ..+.+.++|+.+++.......  ...+....|+|+|+ .++-.. ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence            68888888742         346799999998665443332  46789999999999 555554 689999998877544


Q ss_pred             eeeeccc----------------ccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       261 ~~~~~~h----------------~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      .....+-                -+.-.++.|+||+++|+.... +..|+.+.+........       ....+..+.+-
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP  149 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP  149 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence            4333220                012345678888877766554 33444443221110000       00112222221


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      --|.....    -.+.++++.+++... +....                                               
T Consensus       150 k~G~~np~----v~l~v~~~~~~~~~~-~~~~~-----------------------------------------------  177 (353)
T PF00930_consen  150 KAGDPNPR----VSLFVVDLASGKTTE-LDPPN-----------------------------------------------  177 (353)
T ss_dssp             BTTS---E----EEEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred             CCCCcCCc----eEEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence            12211111    124455554433210 00000                                               


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                     ........+..+.|+++++.+++...+     ..+.++|..++..........    .+--..-.
T Consensus       178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~  238 (353)
T PF00930_consen  178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD  238 (353)
T ss_dssp             ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred             ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence                           000123567788899998844443322     256677777766544442111    01111122


Q ss_pred             EEEEC-CCC-CEEEEEeCCCe--EEEEECCCCCeeeeEecCcceEE-EEEeecCCEEEEEe-C----CCeEEEEEccCCe
Q 004270          479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLATVA-D----DLVIRLFDVVALR  548 (764)
Q Consensus       479 ~l~~~-~~~-~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~~~-~----d~~i~v~d~~~~~  548 (764)
                      ...+. +++ .++.....||.  |.+++..++.......+.-.|.. +.+.++++.+...+ .    ...++..++..+.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            44443 555 44445556775  55556566655544445566644 67788877665443 3    2356666777334


Q ss_pred             EEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270          549 MVRKFEGHTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~  575 (764)
                      .+..+....+.-..+.|||+|++++-.
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEE
Confidence            455666444433689999999988743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=1.9e-06  Score=90.05  Aligned_cols=111  Identities=21%  Similarity=0.322  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCEEEEEEc----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270          185 SSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (764)
Q Consensus       185 ~~~~~sp~~~~la~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~  260 (764)
                      +-..|+|...++|+++-    .|.|.||- ++|++-.....  +-.+++++|+|..- +|+.|-.-|.+.+|...+.+..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCceee
Confidence            34578999999998863    48898884 66775544433  23467899999876 8999999999999998776655


Q ss_pred             eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      .... .|..+|..+.|+++|..|+++..-|.+.+|.++..
T Consensus        95 tv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   95 TVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             eecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            5554 89999999999999999999999999999998854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=3.4e-06  Score=88.31  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=86.4

Q ss_pred             EEEEEEeeCCCCEEEEEe----CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270          227 VTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      -+-.+|+|..+ ++++++    ..|.|.||- ++|++.....  ..-.+++++|+|..-.|+.|-.-|.+.+|.....  
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--   91 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--   91 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc--
Confidence            34467888887 787776    468888885 5666544433  2234677999999988999988999999966544  


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                        ..-.....|..++..+.|+++|..++++..-|.+.+|....
T Consensus        92 --e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   92 --ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             --eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence              34445568999999999999999999999999999998764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=2.9e-07  Score=86.18  Aligned_cols=128  Identities=15%  Similarity=0.227  Sum_probs=98.8

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~  503 (764)
                      +.|-++.|...++.+..|+.+|.|..+|++.+..-.....    .-.-|...|+++..-. ++++|++.+.+|+|++||.
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a----~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA----QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce----EEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            5666777777889999999999999999987522111000    0026889999998776 7889999999999999999


Q ss_pred             CCCCe---eeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270          504 KGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       504 ~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      +--++   +..+++|   ..-.-+.+.+....++++++|...|||.++.+.++.++.-.
T Consensus       329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            86666   7777766   23334556677889999999999999999999999887643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=4.1e-05  Score=81.01  Aligned_cols=197  Identities=13%  Similarity=0.223  Sum_probs=136.0

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEcCCCCEEEEEEcCC-----eEEEEEccCC-
Q 004270          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD-  213 (764)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~-  213 (764)
                      ...++++.+  ..++.|+.+|.|.++| ++.+.++.|+.+... |..+-...+..+|++-+.|+     .++||+++.- 
T Consensus        27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            445577777  7899999999999998 466777889888877 44444444446777766653     5999998732 


Q ss_pred             -----ceE---EEEe--cc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---CceeeeeeecccccCeeEEEEecC
Q 004270          214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       214 -----~~~---~~~~--~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                           .++   +.+.  .+ ...++.+++.+.+-+ .+|+|-.+|.|..+.-+   .......+.....++|+++.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 223   1121  11 246889999999877 89999999999998532   111122222234579999999999


Q ss_pred             CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      +..++.+..-..|.+|.+....   ........|..++.|..+++....+++++... +.+|+...
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~  244 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSDG  244 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCCC
Confidence            8874444445679999887432   23455678888999999998665566666554 88888653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.49  E-value=2.7e-06  Score=89.94  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=137.4

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  181 (764)
                      ++..++.|+-...+...|+.+.+.    .+........  ..++--++  +.+.+|...|+|.+-|.++.+.++++..|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence            467788888888899999988877    4444433333  22333344  579999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEEc---------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      +.|..+.  -.|+.|++++.         |.-|+|||++.-+.+.-+..+ .+ ..-+.|.|.=...+++.+..|...+-
T Consensus       218 ~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  218 GSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecccceeec
Confidence            9998655  45788888765         445899999988776655543 22 36678888765578888999999999


Q ss_pred             E---CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       253 d---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      |   +.+...-..........+.++++++++..++.+..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9   4433222222223455699999999999999999999999996

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.49  E-value=0.00012  Score=75.18  Aligned_cols=287  Identities=11%  Similarity=0.083  Sum_probs=156.7

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC-------C-----
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-------H-----  313 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~-------h-----  313 (764)
                      .+.+.++|+++++...... . ...+....|+|+|+.++... ++.|.+++....  ....+.. .|       -     
T Consensus        22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~-dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTT-DGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES---TTTEEESB--HHH
T ss_pred             ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEecc-ccceeEEcCccceec
Confidence            4679999999987666554 2 67889999999999998886 567877754333  1111111 11       0     


Q ss_pred             ----CCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          314 ----SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       314 ----~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                          -+.-..+.|+||+++|+.... +..++.+.+........                    ..               
T Consensus        96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------------------~y---------------  140 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------------------QY---------------  140 (353)
T ss_dssp             HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------------------SS---------------
T ss_pred             cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------------------cC---------------
Confidence                123467889999999987653 45555555432211100                    00               


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCcc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~  466 (764)
                                                          ..+..+.+-.-|      ..+.  .+.++++.+++....-. . 
T Consensus       141 ------------------------------------p~~~~~~YPk~G------~~np~v~l~v~~~~~~~~~~~~~-~-  176 (353)
T PF00930_consen  141 ------------------------------------PEVESIRYPKAG------DPNPRVSLFVVDLASGKTTELDP-P-  176 (353)
T ss_dssp             -------------------------------------EEEEEE--BTT------S---EEEEEEEESSSTCCCEE-----
T ss_pred             ------------------------------------CcccccccCCCC------CcCCceEEEEEECCCCcEEEeee-c-
Confidence                                                001111110001      1111  35667777766542111 0 


Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEe--CC---CeEEEEECCCCCeeeeEec--Cc---ceEEEEEe-ecCC-EEEEEe
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLMISAG--YH---GDIKVWDFKGRDLKSRWEV--GC---SLVKIVYH-RVNG-LLATVA  534 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d---g~v~iwd~~~~~~~~~~~~--~~---~i~~~~~s-~~~~-~la~~~  534 (764)
                       .....-...+..+.|.++++.++..-  .+   ..+.+.|..++........  ..   ......+. +++. ++....
T Consensus       177 -~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  177 -NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             -cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence             00013355788999999988444333  22   2466778877655443332  22   22355554 5554 455555


Q ss_pred             CCC--eEEEEEccCCeEEEEeecCCCCeeE-EEEcCCCcEEE-EEeCC----CcEEEEEcCccceEEEEeeCCceE-EEE
Q 004270          535 DDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD----GSLRIWDVILARQIDAIHVDVSIT-ALS  605 (764)
Q Consensus       535 ~d~--~i~v~d~~~~~~~~~~~~h~~~i~~-l~~s~dg~~l~-s~s~d----g~i~iwd~~~~~~~~~~~~~~~v~-~l~  605 (764)
                      .+|  .|.+++..++. .+.+....-.|+. +.++++++.|. ++..+    ..|..-++..+..+..+....... .+.
T Consensus       256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS  334 (353)
T ss_dssp             TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred             cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence            666  45556666665 4466655566755 67888877665 55442    355555666345556665555544 999


Q ss_pred             EcCCCCeEEEEEeC
Q 004270          606 LSPNMDVLATAHVD  619 (764)
Q Consensus       606 ~sp~g~~lat~~~d  619 (764)
                      |||+|++++..+..
T Consensus       335 ~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  335 FSPDGKYYVDTYSG  348 (353)
T ss_dssp             E-TTSSEEEEEEES
T ss_pred             ECCCCCEEEEEEcC
Confidence            99999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.48  E-value=0.00097  Score=71.85  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeE---E-------EEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSIS---S-------CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~---~-------~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      +.|++++.++.|.-.|.++|+.+.++.... ..+.   +       +++  .+..+++++.|+.+.-.|.++|+.+....
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            578888889999999999999998876421 1111   1       122  23567788899999999999999988765


Q ss_pred             ccCCC---CEEEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeee
Q 004270          221 HSMRG---AVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       221 ~~~~~---~v~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~  264 (764)
                      .....   .+++--..-++.  ++++.      .+|.|..+|.++|+.+-...
T Consensus       148 ~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            32111   122211112443  44443      26899999999999887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.47  E-value=0.0042  Score=67.55  Aligned_cols=532  Identities=14%  Similarity=0.110  Sum_probs=267.7

Q ss_pred             eCCeEEEEECCeEEEEecC-ceEEE--ecccccceEEEE---EeCCEEEEEecCCcEEEEEcc-CCcccccc-eeeEecC
Q 004270           65 YRDYTFAAYGNHIAVVKRA-HQVAT--WSRHSAKVNLLL---LFGEHILSIDIDGNMFIWAFK-GIEENLAP-VGHVKLD  136 (764)
Q Consensus        65 ~~~~~~~a~g~~i~vw~~~-~~~~~--~~~h~~~v~~l~---~~g~~l~s~~~dg~v~vWd~~-~~~~~~~~-~~~~~~~  136 (764)
                      +|.+-.+..|..-.+|-.+ .....  +.+....+.+-.   .+|.+.+.++.+|.+...-+. +++..... .+.....
T Consensus       225 ~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lg  304 (1096)
T KOG1897|consen  225 SPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLG  304 (1096)
T ss_pred             CCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecC
Confidence            3445555566664445433 33332  233444444433   378889999999998777666 44432221 1222234


Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEE-------EEEcCCCCCeEEEEEcCC----CCEEEEEE---cC
Q 004270          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-------YEFKGWGSSISSCVSSPA----LDVVAVGC---SD  202 (764)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~h~~~i~~~~~sp~----~~~la~g~---~d  202 (764)
                      ...+.++...-+.  ..+++||.-|.=++-.+.+..-.       .++.. -++|..++.-..    +..+++++   .|
T Consensus       305 e~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~N-LgPI~Dm~Vvd~d~q~q~qivtCsGa~kd  381 (1096)
T KOG1897|consen  305 ETSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVN-LGPIVDMCVVDLDRQGQGQIVTCSGAFKD  381 (1096)
T ss_pred             CcchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhhccc-ccceeeEEEEeccccCCceEEEEeCCCCC
Confidence            4444555544444  58999999887777776543322       33333 457777766432    23455443   47


Q ss_pred             CeEEEEEccCCc-eEEEEeccCCCCEEEEE--EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-
Q 004270          203 GKIHVHNVRYDE-ELVTFTHSMRGAVTALA--FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-  278 (764)
Q Consensus       203 g~i~iwd~~~~~-~~~~~~~~~~~~v~~l~--fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-  278 (764)
                      |++++..-.-+- .+.......-..+..+.  +++.-..+++.+-. +.-++..+... ...+...+-......+..+. 
T Consensus       382 gSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i  459 (1096)
T KOG1897|consen  382 GSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEE-VEETEDPGFSTDEQTIFCSTI  459 (1096)
T ss_pred             CcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEec-cceEEEEEccc-eEEeccccccccCceEEEEcc
Confidence            999988643222 22233322134566666  44433334544432 33444444322 22222112222233333322 


Q ss_pred             CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270          279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  358 (764)
Q Consensus       279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  358 (764)
                      .++.|+-.. .+.||+++-...      .... .....++....+.+...++.++.++.+...++.... .++..+..  
T Consensus       460 ~g~~lvQvT-s~~iRl~ss~~~------~~~W-~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~--  528 (1096)
T KOG1897|consen  460 NGNQLVQVT-SNSIRLVSSAGL------RSEW-RPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKE--  528 (1096)
T ss_pred             CCceEEEEe-cccEEEEcchhh------hhcc-cCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeehe--
Confidence            222332222 234666643211      1111 112333444444466677778777777777665544 22222111  


Q ss_pred             HHHhhccchhhhhccCceeEeeecccccccc--cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDW--CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (764)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  436 (764)
                                   -...+.+++.++..+...  ..++.+-..+..+.+.-.++....-+.......-+..+--.++-.|.
T Consensus       529 -------------~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~  595 (1096)
T KOG1897|consen  529 -------------FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI  595 (1096)
T ss_pred             -------------ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence                         112455555554432221  12333333344444443443333222222222334556666777778


Q ss_pred             CEEEEEecCCcEEEEECc--CCcccce----ecCcccc------------------------------------------
Q 004270          437 NFAVLGTAGGWIERFNLQ--SGISRGS----YLDMSER------------------------------------------  468 (764)
Q Consensus       437 ~~l~~g~~~g~i~i~~~~--~~~~~~~----~~~~~~~------------------------------------------  468 (764)
                      .+|.++..||.+..|.++  +|.....    +...+..                                          
T Consensus       596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~  675 (1096)
T KOG1897|consen  596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM  675 (1096)
T ss_pred             eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence            999999999988776554  3322111    0000000                                          


Q ss_pred             ---------------------------------ccccccCcEEEEEECCCCCEEEEEeCC--------------CeEEEE
Q 004270          469 ---------------------------------SNYAHNGEVVGVACDSTNTLMISAGYH--------------GDIKVW  501 (764)
Q Consensus       469 ---------------------------------~~~~h~~~v~~l~~~~~~~~l~s~~~d--------------g~v~iw  501 (764)
                                                       ....-......+++.+....+.+.+..              ..++++
T Consensus       676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             cccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence                                             000001112223333322222222210              125555


Q ss_pred             ECCCCCeeeeEecC-----cceEEEEEeec-CCEEEEEeC----------CCeEEEEEccCCeEEEEeecC--CCCeeEE
Q 004270          502 DFKGRDLKSRWEVG-----CSLVKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDF  563 (764)
Q Consensus       502 d~~~~~~~~~~~~~-----~~i~~~~~s~~-~~~la~~~~----------d~~i~v~d~~~~~~~~~~~~h--~~~i~~l  563 (764)
                      |-++.+.+...+..     ..+.++.|..| +.++++|..          .|.|.||....++.++....+  .+.+.++
T Consensus       756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL  835 (1096)
T KOG1897|consen  756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL  835 (1096)
T ss_pred             cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence            55555544444333     34555568777 778888863          588999988774444433322  3455555


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcCccceEEE-EeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .-- +|++||.  -...|++|+..+.+.++. -....++..+...-.|+.+|+|..-+ ++.+-..+
T Consensus       836 ~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~  898 (1096)
T KOG1897|consen  836 VEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYK  898 (1096)
T ss_pred             hhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEe
Confidence            432 6777764  467899999998855543 34456688888888999999998776 46665443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=5.6e-05  Score=80.03  Aligned_cols=207  Identities=15%  Similarity=0.182  Sum_probs=137.3

Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC-eeEEEEecCCCEEEEEcCCCc-----EEEEEecCCCCC--
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDGD--  303 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~--  303 (764)
                      |++.+. .++.|+.+|.|.+.+ +.-+.+..+. ++... |..+....+..+|++.+.|+.     +++|+++..++.  
T Consensus        31 ~~s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTG-SVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCc-eEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            455666 899999999999988 3445556666 66666 565655555578888887754     899999876332  


Q ss_pred             ceee---Eec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          304 PRLL---RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       304 ~~~~---~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      +.++   +..    .....++.+++.+.+-+.++.|-.+|.|..+.-.   ..+....                      
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs----------------------  162 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS----------------------  162 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence            3444   111    1235678899999998999999999988877421   1111000                      


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (764)
                                                             ..........+|+.+++..++..++.......|.+|.+...
T Consensus       163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence                                                   00111123489999999999988555555668999999844


Q ss_pred             cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (764)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  513 (764)
                      .+.....       ..|...+.|..+++....+++++. ..+.+|+.+...+...+.
T Consensus       204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            4222212       377888999999876664555554 578999988666655555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.45  E-value=0.0009  Score=74.16  Aligned_cols=242  Identities=13%  Similarity=0.155  Sum_probs=142.3

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      .+.|.++.|..+.. -++.+...|.|.+-|.++......-  .-.+.|.+++|+||+..++..+.++++.+-..+-.   
T Consensus        68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~---  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE---  141 (1265)
T ss_pred             CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence            35899999999988 6777888999999988776543322  35678999999999999999988888776533211   


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (764)
                        ++....-+      ..-.+.+ ..+..|..+.=.-+.-..++.......              .              
T Consensus       142 --~i~E~~L~------~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~--------------~--------------  184 (1265)
T KOG1920|consen  142 --PIAEKPLD------ADDERKS-KFVNVGWGRKETQFRGSEGRQAARQKI--------------E--------------  184 (1265)
T ss_pred             --chhccccc------ccccccc-ccceecccccceeeecchhhhcccccc--------------c--------------
Confidence              11110001      0111122 223333222111111111100000000              0              


Q ss_pred             cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECcCCcc
Q 004270          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS  458 (764)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~~g~i~i~~~~~~~~  458 (764)
                                                    ...........+.-++++|--||.++++.     .....|++||.. |..
T Consensus       185 ------------------------------~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L  233 (1265)
T KOG1920|consen  185 ------------------------------KEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL  233 (1265)
T ss_pred             ------------------------------ccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence                                          00000000112444678999999999883     333689999987 433


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCC---CCeeeeEecC-cceEEEEEeecCCEEE
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA  531 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la  531 (764)
                      -..-.        ...+.-.+++|-|.|..+++-.   .|+.|.++.-+.   ++....+... .++..++|+.++..||
T Consensus       234 ns~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  234 NSTSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             hcccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence            22211        3334456899999999888765   566788887442   2222222333 3489999999999999


Q ss_pred             E---EeCCCeEEEEEccCC
Q 004270          532 T---VADDLVIRLFDVVAL  547 (764)
Q Consensus       532 ~---~~~d~~i~v~d~~~~  547 (764)
                      +   ......|++|-+.+.
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            8   455566999987764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=3.2e-05  Score=80.09  Aligned_cols=195  Identities=13%  Similarity=0.148  Sum_probs=122.5

Q ss_pred             ceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--
Q 004270           95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--  172 (764)
Q Consensus        95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--  172 (764)
                      ..+++...+++|+.|+..|.+.+++-.+++..   ........+.+..+.+|++.|  +++.|+..|.|.++-+..+.  
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~---~~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR---KLKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhh---cccccCccceEEEEEecchhH--hhhhhcCCceEEeehhhccCCC
Confidence            45566667999999999999999999888763   222223455566667889884  68889999999998766532  


Q ss_pred             -EEEEE---cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270          173 -KLYEF---KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGA  244 (764)
Q Consensus       173 -~~~~~---~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~  244 (764)
                       .++.-   +.|...|+|++|++++..+.+|...|.|..-.+.+..    ..+.+... .+.|..+.+.. +. +|++..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q-~~-LLVStl  188 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQ-SY-LLVSTL  188 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeeccc-ce-ehHhhh
Confidence             22221   3478899999999999999999999999999888721    11112121 46777777763 22 444332


Q ss_pred             CCCcEEEEECCCceeeeeeeccccc-CeeEEEEecC----CCEEEEEcCCCcEEEEEecCC
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFAN----EPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      .  .-.+++.+.++..+.=.....+ .-...+|.|.    .+-.+.++.=| .|+|..+..
T Consensus       189 ~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~  246 (726)
T KOG3621|consen  189 T--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFA  246 (726)
T ss_pred             h--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecc
Confidence            2  2334555544322211111122 1344556554    33444444433 688977654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=7.3e-06  Score=86.85  Aligned_cols=178  Identities=13%  Similarity=0.183  Sum_probs=133.5

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecC--ceEEEecccccceEE
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVNL   98 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~--~~~~~~~~h~~~v~~   98 (764)
                      .+...++.++....+..+|..+.+......-....|+-|..  +++++.+|.+   |.+-|..  +.++++..|++.|.+
T Consensus       145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            47788898888888999999998877766443444555544  4555555544   8887754  457789999999999


Q ss_pred             EEEeCCEEEEEec---------CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC-
Q 004270           99 LLLFGEHILSIDI---------DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-  168 (764)
Q Consensus        99 l~~~g~~l~s~~~---------dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~-  168 (764)
                      +...|+.|++|+.         |.-|+|||+...+.    +..+.++.+. .-+.|+|.-. ..+++.+..|...+-|. 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhccccc-ceEEEEecccceeecccc
Confidence            9999999999987         44589999988776    4444444333 3345777654 68999999999999983 


Q ss_pred             --CCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          169 --STK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       169 --~~~-~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                        .+. .-++.+...+..+..+.+|++++.+|.|..+|.|.+|.
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              322 22344444466799999999999999999999999997

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.41  E-value=0.00012  Score=74.97  Aligned_cols=279  Identities=12%  Similarity=0.099  Sum_probs=143.5

Q ss_pred             CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      .|+.+.|.++...|+.+...|.+.+|.....+... .........+...+......                        
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~------------------------   58 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSP------------------------   58 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS------------------------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCC------------------------
Confidence            47889999998899999999999999887654432 11110100000000000000                        


Q ss_pred             eeeCCceEEEEEcccee-----ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          395 CHMDTAQAYVWRLQNFV-----LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                             -.+-|+....     .+...........+.|++++.| +=.++++|+.+|.+.+.|++....+..-.-.....
T Consensus        59 -------~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~  130 (395)
T PF08596_consen   59 -------GKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL  130 (395)
T ss_dssp             --------SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T
T ss_pred             -------cceEEehhhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccccc
Confidence                   0011111100     0001111111225899999997 66799999999999999998766655422111001


Q ss_pred             cccccCcEEEEEECC-----CC---CEEEEEeCCCeEEEEECCC---CCe----eeeE-ecCcceEEEE-EeecC-----
Q 004270          470 NYAHNGEVVGVACDS-----TN---TLMISAGYHGDIKVWDFKG---RDL----KSRW-EVGCSLVKIV-YHRVN-----  527 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~-----~~---~~l~s~~~dg~v~iwd~~~---~~~----~~~~-~~~~~i~~~~-~s~~~-----  527 (764)
                      .......++++.|.-     |+   -.++.|...|.+.+|.+.-   +..    .... ...+++..+. ++.+.     
T Consensus       131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~  210 (395)
T PF08596_consen  131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL  210 (395)
T ss_dssp             -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B
T ss_pred             ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc
Confidence            123345678887752     33   4678888999999998751   111    1111 2334555444 22221     


Q ss_pred             ---------------CEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc-----CCCcEEEEEeCCCcEEEEEcC
Q 004270          528 ---------------GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       528 ---------------~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s-----~dg~~l~s~s~dg~i~iwd~~  587 (764)
                                     .-+++...+..++++...+.+...+.....-....+.+-     ..+..|++-..+|.|+++.++
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence                           134555567899999998887766555332233344552     356678888899999999999


Q ss_pred             ccceEEEEeeCCc-----eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          588 LARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       588 ~~~~~~~~~~~~~-----v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      .-+.+..++.+..     +...+++++|+.++..+..+  +.++.+
T Consensus       291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE--~~l~sv  334 (395)
T PF08596_consen  291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE--IQLFSV  334 (395)
T ss_dssp             T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE--EEEEEE
T ss_pred             CchHhhcccCCCccccccccccEECCCCCEEEEeCccc--EEEEEE
Confidence            9999988877442     66778899999888776654  444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.35  E-value=0.00056  Score=67.82  Aligned_cols=181  Identities=15%  Similarity=0.140  Sum_probs=94.7

Q ss_pred             EEeCCCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          144 IMHPDTYLNKVIVGSQ-E--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      +|.+++  ++|+.++. +  ..+.+.|+.+++..+--.+-........++|+.+.++-......|+-.|+++.+....+.
T Consensus        42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            457777  56666554 4  457777999998877666533333356777888888766666789999999988765555


Q ss_pred             ccCCCCEEEEEEee--CCCCEEEEEe----------------------CCCcEEEEECCCceeeeeeecccccCeeEEEE
Q 004270          221 HSMRGAVTALAFSS--DGQPLLASGA----------------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (764)
Q Consensus       221 ~~~~~~v~~l~fs~--d~~~~l~sg~----------------------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~  276 (764)
                      .+ ...+-...|..  |+. .++-.-                      ....|.-.|+.+|+....+.  -...+..+.|
T Consensus       120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f  195 (386)
T PF14583_consen  120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF  195 (386)
T ss_dssp             ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred             CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence            54 55565566653  344 333211                      12346667888887666655  4567889999


Q ss_pred             ecCCCEEEEEcC----CC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          277 FANEPVLMSASA----DN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       277 ~~~~~~l~s~~~----d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      +|..+.+++=+.    +. .-|||-++......+.+.... -...+..=-|.|||..|.-
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence            997765544332    33 248898887655444443221 1222333346777765543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.33  E-value=0.0029  Score=68.24  Aligned_cols=105  Identities=11%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEE----------EEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA----------LAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (764)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~----------l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~  262 (764)
                      +..|.+++.++.|.-.|.++|+.+.++.......+..          +++. ++  .++.++.++.|.-.|.++|+.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence            4577788888999999999999998876432211211          2222 23  466778899999999999998877


Q ss_pred             eeccccc---CeeEEEEecCCCEEEEEc------CCCcEEEEEecCCC
Q 004270          263 IREAHDN---AIISLHFFANEPVLMSAS------ADNSIKMWIFDTTD  301 (764)
Q Consensus       263 ~~~~h~~---~v~~l~~~~~~~~l~s~~------~d~~i~vw~~~~~~  301 (764)
                      .......   .+.+--..-++ .++.+.      .+|.|..+|.++++
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~  192 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK  192 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence            6522111   12211111144 344433      25777777766553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=0.0017  Score=67.23  Aligned_cols=279  Identities=11%  Similarity=0.123  Sum_probs=181.6

Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      +.+++..+.+....+. .+ .....+...+++..+..... ...+...+..  ..  ........-......+++++.+.
T Consensus        13 ~~v~~~~~~~~~~~~~-~~-~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n--~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAIS-LG-RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SN--TVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEee-cC-CCCceeEEcCccCEEEEEeecCceeeecccc--cc--eeeeeccCCCccccceeeCCCCC
Confidence            6666666665555554 22 25667777888754444332 2233333222  11  11111111114556788888777


Q ss_pred             EEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          328 HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       328 ~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      .++ ....+..+.+.|............                                                    
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v----------------------------------------------------  114 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPV----------------------------------------------------  114 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence            544 444557888888554433322211                                                    


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                       ......++++++++.+.++..   ++.+.+.|..++.......       .+. .+ ..++++
T Consensus       115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG~-~P-~~~a~~  168 (381)
T COG3391         115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VGN-TP-TGVAVD  168 (381)
T ss_pred             -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cCC-Cc-ceEEEC
Confidence                             125567899999998888877   6899999999988887743       122 23 899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCCeee-----eEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEE-e
Q 004270          484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F  553 (764)
Q Consensus       484 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~-~  553 (764)
                      |+|..++.+. .++.|.+.|........     ..........+.++++|.++.+....   +.+.+.|..++..... .
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9999666555 78999999987776664     23334566789999999977776554   5999999998887765 2


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeC-CCcEEEEEcCccceEEEEeeCCc----eEEEEEcCCCC
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD  611 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~----v~~l~~sp~g~  611 (764)
                      ..-......+.++|+|+++.+... .+.+.+-|..+.+....+.....    +..+++.+...
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence            222114567899999999887744 48899999998888887665443    66666655443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.28  E-value=0.00021  Score=74.13  Aligned_cols=183  Identities=16%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      +.....+|.+.++ +++-..++.|.++.--.......+.         ....+..+-.   |.+|...+.+ .|.+||..
T Consensus        69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~  134 (443)
T PF04053_consen   69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSSD-FICFYDWE  134 (443)
T ss_dssp             EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred             CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence            3445677888555 5555568889996433333322332         1123444433   7777776654 89999999


Q ss_pred             CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC-----------eEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-----------~~~~~~~~h~~~i~~l~~s~dg~~l~  573 (764)
                      +++.++.+.... +..+.|++++.++|..+.+ .+.|++.+..           .....+..-..+|.+.+|..| -++.
T Consensus       135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiY  211 (443)
T PF04053_consen  135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIY  211 (443)
T ss_dssp             T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEE
T ss_pred             HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEE
Confidence            999999998765 8999999999999999866 6667664432           022233322467999999876 4444


Q ss_pred             EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      |. .. .++-  +..|+.-..-....++.=+...|..+.+.....|.. |..+.++
T Consensus       212 tT-~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld  262 (443)
T PF04053_consen  212 TT-SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD  262 (443)
T ss_dssp             E--TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred             Ec-CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence            43 33 6776  555554444444667777788887778888888874 8877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.26  E-value=0.00017  Score=78.80  Aligned_cols=191  Identities=19%  Similarity=0.214  Sum_probs=124.8

Q ss_pred             CCcceEEEEEe--CCeEEEEECCeEEEEecC--ceE------EEecccccc----eEEEEE--eCCEEEEE-ecCCcEEE
Q 004270           55 LPKKIRALASY--RDYTFAAYGNHIAVVKRA--HQV------ATWSRHSAK----VNLLLL--FGEHILSI-DIDGNMFI  117 (764)
Q Consensus        55 ~~~~I~~~~~~--~~~~~~a~g~~i~vw~~~--~~~------~~~~~h~~~----v~~l~~--~g~~l~s~-~~dg~v~v  117 (764)
                      ......+|++.  .|..|++-|+.|-|++..  ..+      ..+..-.+.    -..|.-  +.+.|+.- ...+.|.-
T Consensus       429 ~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~  508 (794)
T PF08553_consen  429 DGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYK  508 (794)
T ss_pred             CCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEE
Confidence            35667778877  589999999999999754  111      011111111    111111  22333332 34567899


Q ss_pred             EEccCCcccccceeeEecCCccccEEEEeCCCC-----CCEEEEEeCCCcEEEEeCCCC--eEEEE-Ec--CCCCCeEEE
Q 004270          118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY-----LNKVIVGSQEGSLQLWNISTK--KKLYE-FK--GWGSSISSC  187 (764)
Q Consensus       118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~l~~~~~dg~i~iwd~~~~--~~~~~-~~--~h~~~i~~~  187 (764)
                      -|++.++.    +..+..+.... ..-+.|+..     ....++|-.++.+..||.+-.  +++.. .+  ......+|+
T Consensus       509 mDLe~GKV----V~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  509 MDLERGKV----VEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             EecCCCcE----EEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            99999999    88888876543 333445421     145778888899999998742  33321 11  124567888


Q ss_pred             EEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       188 ~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      +-+.+| +||+|+.+|.||+|| +.|+...+...+...+|..|..+.||+++|||+  +..|.+++.
T Consensus       584 aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  584 ATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             EecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence            888776 799999999999999 455555555445578999999999999666665  467888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.26  E-value=0.0064  Score=60.55  Aligned_cols=170  Identities=19%  Similarity=0.195  Sum_probs=84.1

Q ss_pred             EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-----eEEEEECC--CCCe--eeeEecCcce
Q 004270          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDFK--GRDL--KSRWEVGCSL  518 (764)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~--~~~~--~~~~~~~~~i  518 (764)
                      |...|+.+|+....+         .-...+..+.|+|....+++-+..|     .-|+|-++  ....  +..-.....+
T Consensus       170 i~~idl~tG~~~~v~---------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  170 IFTIDLKTGERKVVF---------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV  240 (386)
T ss_dssp             EEEEETTT--EEEEE---------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred             EEEEECCCCceeEEE---------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence            444556665554443         3345667788888766666554333     13566554  2222  2221222455


Q ss_pred             EEEEEeecCCEEEEEeC-----CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC--------------
Q 004270          519 VKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------------  579 (764)
Q Consensus       519 ~~~~~s~~~~~la~~~~-----d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg--------------  579 (764)
                      ..=-|.|||..+..-+.     +..|.-+|..+++......  ..+...+.-++||+++|-=+.|.              
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~  318 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN  318 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-----------------
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence            66678999987765332     4467777888876543222  22455667789999877433332              


Q ss_pred             --cEEEEEcCccceEEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          580 --SLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       580 --~i~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                        .|+++++..++.....++..           .=....|||||++++-.+.-.+...||-+
T Consensus       319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence              56778888776554333321           12468999999999888765544555543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=4.6e-05  Score=80.06  Aligned_cols=180  Identities=17%  Similarity=0.245  Sum_probs=124.6

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (764)
                      ...+++++.    ..++.|+.+|.+++.+.. +.. .+...|...      ..+|.++++++.||+|.|-.+-+++...+
T Consensus        41 ~is~~av~~----~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   41 AISCCAVHD----KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             HHHHHHhhc----ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            344455554    469999999999999864 444 444455444      66899999999999999999999998888


Q ss_pred             EeccCCCCEEEEEEeeC-----CCCEEEEEeCCCcEEEEECCC--ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270          219 FTHSMRGAVTALAFSSD-----GQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d-----~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~  291 (764)
                      +..  ..++.+++++|+     .+ .+++|+..| +.++.-+=  .+....+. .-.++|.++.|.  |++++-++.+| 
T Consensus       109 ~df--~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWand~G-  180 (846)
T KOG2066|consen  109 YDF--KRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWANDDG-  180 (846)
T ss_pred             Eec--CCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEecCCC-
Confidence            876  478999999998     33 688899888 77765321  11111233 567899999994  66888888766 


Q ss_pred             EEEEEecCCCCCceeeEecc-CC-----CCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          292 IKMWIFDTTDGDPRLLRFRS-GH-----SAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~-~h-----~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      |+|||.....    .+.... .+     ......+.|.++. .|+.|=.| +|++..++
T Consensus       181 v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             cEEEeccccc----eeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            8999887653    222221 11     1233456776554 45544434 59999887

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=0.011  Score=61.12  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             CCEEEEEEeeCCCCEEEEE----eCCCc----EEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270          225 GAVTALAFSSDGQPLLASG----ASSGV----ISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg----~~dg~----i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v  294 (764)
                      ....++.|+....+.+.+-    +.+|.    -.+|++..++  .+..........|.+++++|+...|+.|+.||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3446667765444344432    22333    3456665543  233333457889999999999999999999999999


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~  349 (764)
                      ||...+.      .......-.++.++|+|+|..+++|+..|.+.+||+.-....
T Consensus       286 yD~~~~~------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  286 YDTTRGV------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             EEcCCCe------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            9876542      222244567899999999999999999999999998755443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.0012  Score=68.56  Aligned_cols=190  Identities=15%  Similarity=0.140  Sum_probs=103.2

Q ss_pred             cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV  207 (764)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~i  207 (764)
                      .+.+.+.........+.++|++  +.+++ +.+|.-.|+.....+....-++     ...+|.+.+ .+|+-..++.|.|
T Consensus        23 l~~k~lg~~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~G~g-----~~~vw~~~n-~yAv~~~~~~I~I   93 (443)
T PF04053_consen   23 LSVKELGSCEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAFGSG-----LSFVWSSRN-RYAVLESSSTIKI   93 (443)
T ss_dssp             ---EEEEE-SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEEEE------SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred             EEeccCCCCCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCcccccCce-----eEEEEecCc-cEEEEECCCeEEE
Confidence            3345555556667888899999  67777 6778889998555555443332     467888854 5777777889999


Q ss_pred             EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      +.--..+....+..+  ..+..+-.   |. +|...+. +.|.+||+.+++.+..+.  .. +|..+.|++++.+++..+
T Consensus        94 ~kn~~~~~~k~i~~~--~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLP--FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             EETTEE-TT-----S--S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-
T ss_pred             EEcCccccceEEcCC--cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEe
Confidence            632233333344432  23444433   77 6666553 489999999999999987  22 489999999999998887


Q ss_pred             CCCcEEEEEecCC-------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          288 ADNSIKMWIFDTT-------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       288 ~d~~i~vw~~~~~-------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                      .+ ++.+++.+..       ++..........-...|.+..|..+  .++-.+.. .++.
T Consensus       164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            54 6888876543       1222233333333578888888866  44444433 5555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.17  E-value=0.00069  Score=69.47  Aligned_cols=242  Identities=11%  Similarity=0.125  Sum_probs=129.4

Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc---------------------------------------eeeEec
Q 004270          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------------------------------RLLRFR  310 (764)
Q Consensus       270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~---------------------------------------~~~~~~  310 (764)
                      .|+.+.|.++..-|+.+...|.|.+|.+.......                                       .....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998899999999999999776542211                                       001111


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      ....++|++++.+. =-+++.|..+|.+.+.|++....+..-....                                  
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~----------------------------------  127 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE----------------------------------  127 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence            22367888888874 4489999999999999997655443311110                                  


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-----cCC---CEEEEEecCCcEEEEECcC---Cccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR  459 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~~g~i~i~~~~~---~~~~  459 (764)
                                                ..........++++.|+     .|+   -.+++|++.|.+.+|.+.-   +...
T Consensus       128 --------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~  181 (395)
T PF08596_consen  128 --------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS  181 (395)
T ss_dssp             ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred             --------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence                                      00000112445555554     223   4688999999999998752   2222


Q ss_pred             ceecCccccccccccCcEEEEE-ECCC-C-------------------CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270          460 GSYLDMSERSNYAHNGEVVGVA-CDST-N-------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~-~~~~-~-------------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~  517 (764)
                      ..+..    ....+.+.|..+. ++.+ |                   .-++....+..+|++...+.+..+..... ..
T Consensus       182 v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~  257 (395)
T PF08596_consen  182 VQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL  257 (395)
T ss_dssp             EEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred             EEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence            12211    0124555555554 3221 1                   12344445678999999887766655422 22


Q ss_pred             eEEEEE-----eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC----CCeeEEEEcCCCcEEEEEe
Q 004270          518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       518 i~~~~~-----s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~----~~i~~l~~s~dg~~l~s~s  576 (764)
                      ...+++     ...+..|++-..+|.+++|.+...+.+..+.-+.    ..+....++++|..++-.+
T Consensus       258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            233444     2356788888999999999999999888877542    2345566777777665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.14  E-value=0.0014  Score=62.25  Aligned_cols=217  Identities=13%  Similarity=0.112  Sum_probs=117.0

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...++.++|.|+...++++....+.|...+. +|+.+..+...-.+..-.+++..++.++++.-.++.+.+++++.....
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3469999999987658888888999999997 578888876444567889999988877777767899999988554322


Q ss_pred             cee--eE-----eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       304 ~~~--~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      ...  ..     ....+...+-.++|.+.++.|+.+-......+|.+........+.                       
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-----------------------  156 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-----------------------  156 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-----------------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-----------------------
Confidence            111  11     112355678999999988888888777777888776422000000                       


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS  455 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~  455 (764)
                                                 +.+....       .........+.+++++|.. ++++....+..+..+| .+
T Consensus       157 ---------------------------~~~~~~~-------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~  201 (248)
T PF06977_consen  157 ---------------------------VSDDQDL-------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQ  201 (248)
T ss_dssp             ---------------------------EEE-HHH-------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred             ---------------------------ecccccc-------ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence                                       0000000       0000112456777887754 5666666777888888 55


Q ss_pred             CcccceecCccc-cccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          456 GISRGSYLDMSE-RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       456 ~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      |+.+..+..... ..+...-...-+|+++++|++.+++ .-+..++
T Consensus       202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            555444432110 0001112467899999999765554 4444444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.13  E-value=0.0041  Score=64.81  Aligned_cols=51  Identities=16%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      .|.||+.. |+.+.++.-.. +.+.++.|+.+..  |++-..||.++++|+....
T Consensus        62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEECC-CCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce
Confidence            58889864 77888877663 8999999998765  5556689999999986433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.11  E-value=0.00072  Score=68.66  Aligned_cols=179  Identities=15%  Similarity=0.163  Sum_probs=114.2

Q ss_pred             CCEEEEEec---------C-CcEEEEECcCC----cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          436 GNFAVLGTA---------G-GWIERFNLQSG----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       436 g~~l~~g~~---------~-g~i~i~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ..++++|+.         . |.|.+|++...    .......      .....++|++++-- +++ |+.+. .+.|.+|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~  112 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------STEVKGPVTAICSF-NGR-LVVAV-GNKLYVY  112 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------EEeecCcceEhhhh-CCE-EEEee-cCEEEEE
Confidence            578888865         2 89999999884    1111111      12557889998876 344 44443 4799999


Q ss_pred             ECCCCC-eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC-CeEEEEee--cCCCCeeEEEEcCCCcEEEEEeC
Q 004270          502 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       502 d~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~-~~~~~~~~--~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      ++...+ ....-..+.++........++++++|.....+.++..+. .+.+..+.  .....++++.|-+|++.++.+..
T Consensus       113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             EccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence            999888 666655555555555666688999999988888885543 23222322  23456889999877778999999


Q ss_pred             CCcEEEEEcCc-------cc----eEEEEeeCCceEEE---EEcCC--CC------eEEEEEeCCCeEE
Q 004270          578 DGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY  624 (764)
Q Consensus       578 dg~i~iwd~~~-------~~----~~~~~~~~~~v~~l---~~sp~--g~------~lat~~~d~~~i~  624 (764)
                      +|.+.++..+.       +.    .+..+..+..|+++   ++.|.  +.      .++.++.+| +|.
T Consensus       193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig  260 (321)
T PF03178_consen  193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG  260 (321)
T ss_dssp             TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred             CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence            99999998863       22    33556667778888   66662  22      377777888 466

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.10  E-value=9e-05  Score=76.65  Aligned_cols=186  Identities=15%  Similarity=0.107  Sum_probs=125.5

Q ss_pred             CCeEEEEEccCCCEEEEE---ecC-CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCe--
Q 004270          425 TAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD--  497 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g---~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~--  497 (764)
                      ..+..-.|+|++..++.-   ... ..+.++++.++.......         ..+.-...+|+|||+.|+-+. .||.  
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            455667888888765543   222 468999999887766553         233344568999998877554 5665  


Q ss_pred             EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      |.+.|+.++...+.....+.-+.-.|+|||+.++..++.+   .|.+++.+.... ..+....+.-..-.|||||++|+.
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence            6666777777544333334445778999999999887643   677778776655 333333332236789999999997


Q ss_pred             EeC-CCc--EEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       575 ~s~-dg~--i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      .+. +|.  |.+.|+.++..++.+........-+|.++|..+...+...
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            764 344  7777877776666666555567788899998887766543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.015  Score=60.23  Aligned_cols=284  Identities=14%  Similarity=0.118  Sum_probs=179.2

Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      +.+++..+.+....+..+. ....+...+++..+.+.... ..+...+.. .................++.++.+....+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence            6666666666665555433 55677888888655544332 245555444 22222211110134567888888886777


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      ....++.|.+.|..+.+.......+.  ....+++.++++.+..+..   ++++.+.|-.+.    ........-..+ .
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~  163 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-T  163 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-c
Confidence            77677999999988888887776444  6788999999987776665   455555544333    333332222233 8


Q ss_pred             eEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          319 CIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      .+++.|+|..++.+. .++.+.+.|.......+ -...                                          
T Consensus       164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~------------------------------------------  200 (381)
T COG3391         164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG------------------------------------------  200 (381)
T ss_pred             eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc------------------------------------------
Confidence            999999999776665 67888888854432221 0000                                          


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCcccccccccc
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                                           ...........+.++++|+++.+....   +.+...|..++.....-..      .+..
T Consensus       201 ---------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~  253 (381)
T COG3391         201 ---------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG  253 (381)
T ss_pred             ---------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC
Confidence                                 000112455678999999987776555   5899999988877665210      1222


Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecCcc----eEEEEEeec
Q 004270          475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHRV  526 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~----i~~~~~s~~  526 (764)
                       ....+.++|+|+.+.... ..+.+.+-|..+............    +..+++.+.
T Consensus       254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence             566789999999888874 448899999888877776654432    555555543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.007  Score=63.14  Aligned_cols=194  Identities=12%  Similarity=0.117  Sum_probs=103.8

Q ss_pred             EEEEec-CceEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccc---eeeEecCCccccEEEEeCCCCC
Q 004270           77 IAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAP---VGHVKLDDKFTPTCIMHPDTYL  151 (764)
Q Consensus        77 i~vw~~-~~~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~  151 (764)
                      |.+|+. |+.+.+..-..+.|.++.| +...|+....||.++++|+.... ....   +.........+....+...|  
T Consensus        63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--  139 (410)
T PF04841_consen   63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--  139 (410)
T ss_pred             EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--
Confidence            777874 5666663222288999998 56789999999999999986444 1110   11111111111111222233  


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-EEEEE---cCCCC------CeE-EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKK-KLYEF---KGWGS------SIS-SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~h~~------~i~-~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                        +++-..++.+.+.+--... ....+   .....      ... ...++.+....+....++.+.+.+-...+.   +.
T Consensus       140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~  214 (410)
T PF04841_consen  140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID  214 (410)
T ss_pred             --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence              4444455555444322211 11111   11000      000 022333444444444444454333221111   11


Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~  281 (764)
                        ..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|.-+..
T Consensus       215 --~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  215 --SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             --CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence              146899999999999 8888888999999987666666666533345667788876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.06  E-value=0.0044  Score=62.92  Aligned_cols=218  Identities=14%  Similarity=0.172  Sum_probs=126.5

Q ss_pred             cEEEEEccCCcccccceeeEecCCccccEEE--Ee--CC--CCCCEEEEEeC----------CCcEEEEeCCCC------
Q 004270          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCI--MH--PD--TYLNKVIVGSQ----------EGSLQLWNISTK------  171 (764)
Q Consensus       114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--p~--~~~~~l~~~~~----------dg~i~iwd~~~~------  171 (764)
                      .|++.|..+.+.    +.++.+.......++  +.  .+  +...++++|+.          .|.|.++++...      
T Consensus         3 ~i~l~d~~~~~~----~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~   78 (321)
T PF03178_consen    3 SIRLVDPTTFEV----LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK   78 (321)
T ss_dssp             EEEEEETTTSSE----EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred             EEEEEeCCCCeE----EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence            466666666554    444444433322222  22  11  01256777654          288999999884      


Q ss_pred             -eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          172 -KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       172 -~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                       +.++... ..++|++++.- .+ +|+++. .+.|.+|++...+ ....-..+....+.++...  ++ +++.|+....+
T Consensus        79 l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv  151 (321)
T PF03178_consen   79 LKLIHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSV  151 (321)
T ss_dssp             EEEEEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSE
T ss_pred             EEEEEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCE
Confidence             2233333 37889998877 33 455554 4899999999888 5544444334567777665  44 88899888888


Q ss_pred             EEEECC--CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC----CCc-eeeEeccC-CCCCCeeE-
Q 004270          250 SIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD----GDP-RLLRFRSG-HSAPPLCI-  320 (764)
Q Consensus       250 ~iwd~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~----~~~-~~~~~~~~-h~~~v~~i-  320 (764)
                      .++..+  ..+....-+......++++.|.+++..++.+..+|.+.++.++...    ... ++.....- ....|+++ 
T Consensus       152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~  231 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR  231 (321)
T ss_dssp             EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred             EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence            877443  3334433333445678999999776799999999999999887421    111 22222222 33456666 


Q ss_pred             --EEec--CC------CEEEEEeCCCcEEEEE
Q 004270          321 --RFYA--NG------RHILSAGQDRAFRLFS  342 (764)
Q Consensus       321 --~~~~--~~------~~l~s~~~dg~i~i~d  342 (764)
                        ++.|  .+      ..++.++.+|.|...-
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence              4344  12      2488888999988543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.04  E-value=0.0073  Score=59.90  Aligned_cols=243  Identities=14%  Similarity=0.136  Sum_probs=137.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee-------
Q 004270          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL-------  307 (764)
Q Consensus       235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-------  307 (764)
                      .++ .|+.|+.+| |.+++.........+.  +...|..+...++-+.|++-+ |+.+.+++++.-.......       
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            344 788898888 9999983333333332  344499999999888777775 5999999987653322110       


Q ss_pred             ---EeccCCCCCCeeEE--EecCCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          308 ---RFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       308 ---~~~~~h~~~v~~i~--~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                         .........+...+  -...+...+.....+.+.+|......... ..                             
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~-----------------------------  131 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL-----------------------------  131 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce-----------------------------
Confidence               00112223344444  11233344444445578888765532111 00                             


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                                    ..+.      .-+..+.+++|.  ++.+++|..++ ..+.|+.++.....
T Consensus       132 ------------------------------~ke~------~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l  172 (275)
T PF00780_consen  132 ------------------------------LKEI------SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL  172 (275)
T ss_pred             ------------------------------eEEE------EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE
Confidence                                          0000      112677778887  77888887554 78889887766544


Q ss_pred             ecCcccc----ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee-eeEecCcceEEEEEeecCCEEEEEeCC
Q 004270          462 YLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADD  536 (764)
Q Consensus       462 ~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (764)
                      +......    .......++..+... ++.+|++.  |..-.+.|....... ..+.-...+.++++.  ..+|++... 
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-  246 (275)
T PF00780_consen  173 LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-  246 (275)
T ss_pred             eCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-
Confidence            4211100    000112233344443 45666543  334444454433222 355556677777774  457766655 


Q ss_pred             CeEEEEEccCCeEEEEeecC
Q 004270          537 LVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h  556 (764)
                      +.|.||++.++++++.+...
T Consensus       247 ~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  247 NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             CEEEEEECcCCcEEEEEECC
Confidence            55999999999999888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.00  E-value=0.0027  Score=60.26  Aligned_cols=213  Identities=14%  Similarity=0.132  Sum_probs=111.8

Q ss_pred             ccccCeeEEEEecCCCEEEE-EcCCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          266 AHDNAIISLHFFANEPVLMS-ASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s-~~~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      +-...+.+++|.|+...|++ ....+.|...  +.. +  ++++...- -.+..-.|++..++.++++.-.++.+.++++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~el--s~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYEL--SLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEE--ETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEE--cCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34456999999998665554 4455555444  433 2  34443322 2467889999988887777767898998888


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      ...........                                                    +.     ...+.....+
T Consensus        94 ~~~~~~~~~~~----------------------------------------------------~~-----~~~l~~~~~~  116 (248)
T PF06977_consen   94 DDDTTSLDRAD----------------------------------------------------VQ-----KISLGFPNKG  116 (248)
T ss_dssp             ----TT--EEE----------------------------------------------------EE-----EEE---S---
T ss_pred             eccccccchhh----------------------------------------------------ce-----EEecccccCC
Confidence            54322111000                                                    00     0111111223


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcC---CcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEE
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK  499 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~  499 (764)
                      ...+-.+++++.++.++++-...-..+|.+..   .....................+.+++++|.. .+++.+..+..|.
T Consensus       117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~  196 (248)
T PF06977_consen  117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL  196 (248)
T ss_dssp             SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred             CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence            46788999999999888888877777777654   1111111100000012344568899999964 5666677788899


Q ss_pred             EEECCCCCeeeeEecCc----------ceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270          500 VWDFKGRDLKSRWEVGC----------SLVKIVYHRVNGLLATVADDLVIRLF  542 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~----------~i~~~~~s~~~~~la~~~~d~~i~v~  542 (764)
                      .+| .+|+.+..+....          ....+++.++|++.+++ +-+..++|
T Consensus       197 ~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  197 ELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             EEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            999 6677777665542          57789999988655554 45555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.98  E-value=0.031  Score=57.90  Aligned_cols=75  Identities=12%  Similarity=0.120  Sum_probs=65.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      .....|.+.+++|+.+.++.|+.||.|.+||...+... ..+..-.++.++|+|+|..+++|++.|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            67789999999999999999999999999998776433 3355577899999999999999999999999998754

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.94  E-value=3.2e-06  Score=85.99  Aligned_cols=200  Identities=15%  Similarity=0.166  Sum_probs=136.0

Q ss_pred             CCeEEEEEccCC--CEEEEEecCCcEEEEECcCCccc-ceecCccccccccccCcEEEEEECCCC-CEEEEEe----CCC
Q 004270          425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG  496 (764)
Q Consensus       425 ~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~----~dg  496 (764)
                      ..+.|++...+.  ..+++|..+|.|.+-........ ..+.       .+|....++++|++-. ..||.|-    .|.
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence            455666655443  47899999999999988765444 3332       4788899999999854 4555442    356


Q ss_pred             eEEEEECCCC--CeeeeEe----cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CC
Q 004270          497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG  569 (764)
Q Consensus       497 ~v~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg  569 (764)
                      .+.|||+.++  .+.....    ......+++|-.+.+++.+|.....+.++|++.. +.+.-.-.+..+..+..+| .+
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCC
Confidence            7999999877  3322222    2245568889899999999999999999998732 1111111334566677888 77


Q ss_pred             cEEEEEeCCCcEEEEEcC-c-cceEEEEee-----CCceEEEEEcCCC-CeEEEEEeCCCeEEEEecccccC
Q 004270          570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHV-----DVSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFS  633 (764)
Q Consensus       570 ~~l~s~s~dg~i~iwd~~-~-~~~~~~~~~-----~~~v~~l~~sp~g-~~lat~~~d~~~i~lW~~~~~~~  633 (764)
                      .|+++-. ||.|.+||.. + ..++..+..     ...+..++|+|.. ..|++...|..+|+++++...-.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t  279 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT  279 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence            7888765 9999999942 2 122222222     1238999999943 46788888888999999865433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.016  Score=57.48  Aligned_cols=149  Identities=16%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             CCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee-------
Q 004270          191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI-------  263 (764)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------  263 (764)
                      ..++.|++|+.+| +.+++............  ...|..+...++-+ .|++-+ |+.+.++++..-......       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence            4578999999988 89999843333333333  23499999999877 444443 599999998765444311       


Q ss_pred             ------ecccccCeeEEE--EecCCCEEEEEcCCCcEEEEEecCCCCCc-eeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270          264 ------REAHDNAIISLH--FFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       264 ------~~~h~~~v~~l~--~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                            .......+...+  -...+...+.....+.|.+|.+....... ...+.+ .-...+.+++|.  ++.++.+..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeC
Confidence                  101223344443  11233333344445689999887754433 344444 345788999998  557777776


Q ss_pred             CCcEEEEEeecccc
Q 004270          335 DRAFRLFSVIQDQQ  348 (764)
Q Consensus       335 dg~i~i~d~~~~~~  348 (764)
                      ++ ..+.|+.++..
T Consensus       157 ~~-f~~idl~~~~~  169 (275)
T PF00780_consen  157 KG-FYLIDLNTGSP  169 (275)
T ss_pred             Cc-eEEEecCCCCc
Confidence            55 78888875443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.0022  Score=66.57  Aligned_cols=123  Identities=15%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC--C-CcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--S-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE  280 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~--d-g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~  280 (764)
                      .+.+-|.. +.....+... ...+..-+|+|++..+....-.  . ..+.++|+++++......  -.+.-...+|+|||
T Consensus       174 ~l~~~D~d-g~~~~~l~~~-~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG  249 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDS-GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG  249 (425)
T ss_pred             eEEEEccC-CcceeEeccc-CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC
Confidence            34444433 4444445443 5677888999999844333222  2 459999999987666654  34445567899999


Q ss_pred             CEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          281 PVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       281 ~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      +.|+ +...|+...+|-++........   +....+.-..-.|+|||+.++-.+
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~S  300 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDGSKIVFTS  300 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCCCEEEEEe
Confidence            8665 4556788777766655443222   222222222556778888777654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.84  E-value=1.1e-05  Score=82.34  Aligned_cols=204  Identities=17%  Similarity=0.198  Sum_probs=129.9

Q ss_pred             CEEEEEEeeCC-CCEEEEEeCCCcEEEEECCCceee-eeeecccccCeeEEEEecC-CCEEEEEc----CCCcEEEEEec
Q 004270          226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFAN-EPVLMSAS----ADNSIKMWIFD  298 (764)
Q Consensus       226 ~v~~l~fs~d~-~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~~----~d~~i~vw~~~  298 (764)
                      .+.|+++.-+. +.++++|..+|.|.+-..+...-. .....+|....++++|++- .+.|+.|-    .|-.+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            45555554433 248999999999999887765433 3444478889999999884 45666653    35689999998


Q ss_pred             CCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCce
Q 004270          299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      ..-..+..-..+. +......+++|..+.+.+++|...+.+.++|++..... ..+                        
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------------------------  193 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------------------------  193 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------------------------
Confidence            7632222222222 24455668889888889999999989999998743211 111                        


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEEC-c
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL-Q  454 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~-~  454 (764)
                                                                    ....+..+.++| .+++++.-. +|.|.+||. .
T Consensus       194 ----------------------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~r  226 (783)
T KOG1008|consen  194 ----------------------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYR  226 (783)
T ss_pred             ----------------------------------------------hhhhcccceecCCCCCceeccc-cCceeeccchh
Confidence                                                          113556677888 677776655 999999994 2


Q ss_pred             CC-cccceecCccccccccccCcEEEEEECCCC-CEEEEEe-CCCeEEEEECC
Q 004270          455 SG-ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK  504 (764)
Q Consensus       455 ~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~-~dg~v~iwd~~  504 (764)
                      .- ........    ........+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus       227 nienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  227 NIENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            21 11111110    001222358999999954 3444444 45789999875

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=0.022  Score=60.31  Aligned_cols=105  Identities=13%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             EEEEEEeeCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC---------c--
Q 004270          227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------S--  291 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~---------~--  291 (764)
                      +...+++|||+.++++-+..|    .|+++|+++++.+....  .......+.|.+++..|+....+.         .  
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            346788999994444545545    49999999997765432  111223499999988777665443         2  


Q ss_pred             EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      |..|.+.+......++.....+......+..++|+++++...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence            445544333222122222211111134666677777766443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.065  Score=56.80  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCEEEEEE-cC----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC----------Cc
Q 004270          184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS----------GV  248 (764)
Q Consensus       184 i~~~~~sp~~~~la~g~-~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d----------g~  248 (764)
                      +....+||+++++|.+- ..    ..++++|+++|+.+......  .....+.|.+|++.++.+...+          ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34678999999999763 33    35999999999876643222  1223499999988555555322          24


Q ss_pred             EEEEECCCceee--eeeecccccC-eeEEEEecCCCEEEEEcC-CCc-EEEEEecCCC
Q 004270          249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD  301 (764)
Q Consensus       249 i~iwd~~~~~~~--~~~~~~h~~~-v~~l~~~~~~~~l~s~~~-d~~-i~vw~~~~~~  301 (764)
                      |+.|.+.+....  ..+....... ...+..++++++|+..+. ..+ -.+|-++...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            788888776433  3333122222 568889999998765433 233 4555445443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.0011  Score=72.82  Aligned_cols=142  Identities=14%  Similarity=0.205  Sum_probs=99.0

Q ss_pred             CEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCc--eEEEEe--
Q 004270          152 NKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--  220 (764)
Q Consensus       152 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~--~~~~~~--  220 (764)
                      +.|+.- ...+.|+-.|+++|+.+..++.|... |..++-..     ...-..+|-.+..+..||.+-..  .+..-.  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344443 34577999999999999999987654 55554321     12345678888999999998543  221111  


Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (764)
                      .......+|++-+.+|  .+|+|+.+|.|++||- .++..++...+-..+|.+|..+.||++++..+. ..+.+++.
T Consensus       574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            1124567888888787  5999999999999995 343344433377899999999999998887664 55666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.71  E-value=0.023  Score=57.14  Aligned_cols=123  Identities=17%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             CCeEEEEECCCCCeeeeEecC---cceEEEEEeec--CCEEEE--EeCCCeEEEEEccCCe----EEEEeec-----C--
Q 004270          495 HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGLLAT--VADDLVIRLFDVVALR----MVRKFEG-----H--  556 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~~la~--~~~d~~i~v~d~~~~~----~~~~~~~-----h--  556 (764)
                      ..++.+||+.+.+.++++...   .....+.|..+  ..+-.+  +......++|..+.++    .+-.+..     -  
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            357999999999999999887   33456666554  333333  3233333444434432    1222211     0  


Q ss_pred             ----------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCcc---ceEEEEeeCC-----------------ceEEEE
Q 004270          557 ----------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV-----------------SITALS  605 (764)
Q Consensus       557 ----------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~---~~~~~~~~~~-----------------~v~~l~  605 (764)
                                ..-|++|..|.|.++|..+. .+|.||.||+.+.   +++..+....                 ...-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                      23479999999999997555 7899999999863   4444443221                 235567


Q ss_pred             EcCCCCeEEEEE
Q 004270          606 LSPNMDVLATAH  617 (764)
Q Consensus       606 ~sp~g~~lat~~  617 (764)
                      .|-||+.|..+.
T Consensus       381 lS~DGkRlYvTn  392 (461)
T PF05694_consen  381 LSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTSSEEEEE-
T ss_pred             EccCCeEEEEEe
Confidence            777888777664

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.69  E-value=0.043  Score=56.23  Aligned_cols=87  Identities=17%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC-------------CC-CC-E
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-------------ST-NT-L  488 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------------~~-~~-~  488 (764)
                      ...+.+++.+|++++.++..+-|+|.++|+.++..++.+......    .-+.+....-.             +. .. +
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCCCCcceEEE
Confidence            456889999999999999988899999999999888776421110    00001000000             00 01 3


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEec
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWEV  514 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~~  514 (764)
                      ++-+-.-|.|.||.++.+..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence            34556789999999999887776654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00019  Score=73.58  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=82.2

Q ss_pred             cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee-EEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270          514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (764)
Q Consensus       514 ~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  592 (764)
                      ....+..+.|+|.-.++|.+..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34677889999999999999999999999988 777888887777777 9999999999999999999999999999988


Q ss_pred             EE--EeeCCceEEEEEcC
Q 004270          593 DA--IHVDVSITALSLSP  608 (764)
Q Consensus       593 ~~--~~~~~~v~~l~~sp  608 (764)
                      ..  +....+|.++.|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  55566788888873

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.051  Score=50.81  Aligned_cols=274  Identities=12%  Similarity=0.067  Sum_probs=153.9

Q ss_pred             CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc-EEEEECCCceeeeeeeccccc--CeeEEEEecCCCEEEEEcCC
Q 004270          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDN--AIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d  289 (764)
                      |+.+.....  ...-..++|+|....-++.+-.-|+ ..++|....+...++. ..++  ---.-.|+|||.+|...-.|
T Consensus        58 Gk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd  134 (366)
T COG3490          58 GKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND  134 (366)
T ss_pred             Cceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence            444444443  2445678888887756666665555 5688988887666654 1111  11234689999988876543


Q ss_pred             -----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE-EeecccccccccchhhhHHHhh
Q 004270          290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                           |.|-+||.+..   ...+..+..|.-....+.+.+||+.++.+.  |-|..- |....+....            
T Consensus       135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld------------  197 (366)
T COG3490         135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD------------  197 (366)
T ss_pred             CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh------------
Confidence                 78999988743   244556678888899999999999888764  334443 2211110000            


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                       .-..++.+.+..+..+.+....+...+...++.+++.+||...+-.-
T Consensus       198 ---------------------------------sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ---------------------------------hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence                                             01122233333333332222223334457888999999887665443


Q ss_pred             cCCc----EEEE-ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecCcc
Q 004270          444 AGGW----IERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS  517 (764)
Q Consensus       444 ~~g~----i~i~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~  517 (764)
                      ..|.    --+. -...++....+. .+..........|-+++.+.+..+++..+ ..+...+||..++..+..-.... 
T Consensus       245 y~G~~~d~ppLvg~~~~g~~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-  322 (366)
T COG3490         245 YRGPRNDLPPLVGHFRKGEPLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-  322 (366)
T ss_pred             eeCCCccCCcceeeccCCCcCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-
Confidence            2221    1111 111222222221 11111123445677888887666665555 45567899999998876554331 


Q ss_pred             eEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          518 LVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                        +.-.-+...-+++.+.+|.+.++.
T Consensus       323 --aaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         323 --AAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             --cccceeccCceEEecCCceEEecc
Confidence              111223345566677788887774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00023  Score=73.08  Aligned_cols=92  Identities=21%  Similarity=0.360  Sum_probs=80.2

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSIS-SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (764)
                      +..+.++|.-  ..+|.+..+|.|.+..++ .+.+.++.-|+..++ +++|.|||+.||+|..||+|++.|+.++..+..
T Consensus        23 i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4556788888  789999999999999987 888999987888888 999999999999999999999999999999888


Q ss_pred             EeccCCCCEEEEEEee
Q 004270          219 FTHSMRGAVTALAFSS  234 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~  234 (764)
                      +.......|.++-|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            5544467888988874

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.025  Score=55.83  Aligned_cols=237  Identities=16%  Similarity=0.122  Sum_probs=131.3

Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      ..|.++...++.+--..+.|.-|+..+++.....   +.+.+.++.....+..|+++..  .+.+++.+..... ..+..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEecc
Confidence            4567777656666667889999998866543332   3344455555555556665543  3566665333110 12111


Q ss_pred             c-cC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          310 R-SG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       310 ~-~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      . .+ -....+.+...|+|.+-++....     ++  .+...                                      
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~-----~~--~~~~~--------------------------------------  138 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGY-----FD--LGKSE--------------------------------------  138 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCc-----cc--cCccc--------------------------------------
Confidence            1 11 12455677777777655543321     11  00000                                      


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcC--CcccceecC
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYLD  464 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~--~~~~~~~~~  464 (764)
                              ....+  .+|.+...   .........+-.....++||||++.+++.... +.|+.|++..  +.....-  
T Consensus       139 --------~~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--  203 (307)
T COG3386         139 --------ERPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--  203 (307)
T ss_pred             --------cCCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc--
Confidence                    00111  12222210   11111111223556789999999888877664 7899888763  2111110  


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCCCCeeeeEecC-cceEEEEEee-cCCEEEEEe
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA  534 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~  534 (764)
                       .......+.+..-+++.+.+|.+.+++..+| .|.+|+.+ ++++..+..+ ..+++++|-- +.+.|.+.+
T Consensus       204 -~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         204 -GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             -eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             0001123456777889999998886555554 99999988 9999999888 7788888854 344444443

>smart00320 WD40 WD40 repeats

Probab=97.48  E-value=0.00035  Score=44.51  Aligned_cols=39  Identities=38%  Similarity=0.841  Sum_probs=34.9

Q ss_pred             CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +++...+..|...|.++.|+++++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.48  E-value=0.01  Score=47.39  Aligned_cols=101  Identities=21%  Similarity=0.304  Sum_probs=70.8

Q ss_pred             EEEEEEe---eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       227 v~~l~fs---~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      |++|++.   .||..-|++|+.|..|++|+-  ...+..+.  -.+.|+++.-... ..++.+-.+|+|-+|+-..    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence            5666655   466678999999999999984  46666665  5567888888766 5789999999999995422    


Q ss_pred             ceeeEeccCCCCCCeeEEEec-C--C-CEEEEEeCCCcEE
Q 004270          304 PRLLRFRSGHSAPPLCIRFYA-N--G-RHILSAGQDRAFR  339 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-~--~-~~l~s~~~dg~i~  339 (764)
                       ++.+.-  ....+.++.+.. +  | ..|++|-.+|.+-
T Consensus        73 -RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 -RLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             333332  233477777765 2  2 3688888888664

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.47  E-value=0.12  Score=52.32  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             eeeEecCcceEEEEEeec-------CCEEEEEeCCCeEEEEEccCCeEEE---E-eecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          509 KSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       509 ~~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~i~v~d~~~~~~~~---~-~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      ...+..+..+..+.|.+.       |.++++....+.|....++....+.   . +.....++.++++.|||.+.++.+.
T Consensus       246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~  325 (331)
T PF07995_consen  246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS  325 (331)
T ss_dssp             SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred             ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence            334455566777777643       4466666667788888887553322   2 2334458999999999999998888


Q ss_pred             CCcEE
Q 004270          578 DGSLR  582 (764)
Q Consensus       578 dg~i~  582 (764)
                      +|.|.
T Consensus       326 ~G~iy  330 (331)
T PF07995_consen  326 DGKIY  330 (331)
T ss_dssp             TTTEE
T ss_pred             CCeEe
Confidence            88764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0053  Score=62.04  Aligned_cols=140  Identities=16%  Similarity=0.206  Sum_probs=100.4

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEccCCce-EEEEeccC--
Q 004270          154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHSM--  223 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-------~la~g~~dg~i~iwd~~~~~~-~~~~~~~~--  223 (764)
                      +..+.....++-.|++.|+.+.+++-|.. |+-+.+.|+.+       .-++|-.+..|.-||.+-... .......+  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            33456667799999999999999998776 78888888753       234677889999999873222 22222211  


Q ss_pred             --CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          224 --RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       224 --~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                        .....|.+-..+|  ++++|+.+|.|++||- .++...+...+...+|..+..+.+|++++..+ +..+.+-+..
T Consensus       428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence              2345666666566  6999999999999997 55555555448899999999999999887665 4556665543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.074  Score=52.60  Aligned_cols=206  Identities=14%  Similarity=0.095  Sum_probs=118.7

Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----CC-CCCeEE
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK----GW-GSSISS  186 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h-~~~i~~  186 (764)
                      .+.|.-|+..+++.     ..+..+........+...+    .++++..| +.+++.+++..+..+.    +. ....+.
T Consensus        46 ~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          46 GGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             CCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCCc
Confidence            55677777765544     3444455555555566655    44555555 7788877666633331    11 244567


Q ss_pred             EEEcCCCCEEEEEEc---------CCeEEEEEcc-CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          187 CVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       187 ~~~sp~~~~la~g~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      +...|+|.+.+....         ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++..
T Consensus       116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            788899887665433         0111445444 45544444432 345578999999984555555668888888752


Q ss_pred             --c----eeeeeeecccccCeeEEEEecCCCEEEEEcCCC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCE
Q 004270          257 --R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH  328 (764)
Q Consensus       257 --~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~  328 (764)
                        +    +........+.+..-.++...+|.+-+++..+| .|.+|+.+ +    +++....-....+++++|-. +.+.
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCE
Confidence              2    111111112345566677777787665444443 78888655 2    45555555557788888865 4455


Q ss_pred             EEEEe
Q 004270          329 ILSAG  333 (764)
Q Consensus       329 l~s~~  333 (764)
                      |+..+
T Consensus       270 L~iTs  274 (307)
T COG3386         270 LYITS  274 (307)
T ss_pred             EEEEe
Confidence            54444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.42  E-value=0.022  Score=61.99  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=98.1

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs  233 (764)
                      +|.+.-.+-.....+.-..+....+...++||+|+.+|...      .|+.-.||=...+.....+...  ...+.-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence            66665544322223322323335678999999999888765      2443344433333333444433  248889999


Q ss_pred             eCCCCEEEEEeC------------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-C
Q 004270          234 SDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T  300 (764)
Q Consensus       234 ~d~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~  300 (764)
                      |||+ .+++...            .+.+.+.+++.+....    ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus       406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            9987 4544432            2234333444443322    1346799999999999888766 46666532222 2


Q ss_pred             CCCceee--E-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          301 DGDPRLL--R-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       301 ~~~~~~~--~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .+..++.  . ...+-...+..+.|..++.+ +.+..++.-.+|.+.
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence            3322221  1 11223344688999998874 455555545556554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.41  E-value=0.007  Score=65.75  Aligned_cols=146  Identities=12%  Similarity=0.060  Sum_probs=91.0

Q ss_pred             CcEEEEEECCCCCEEEEEe------CCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC----------
Q 004270          475 GEVVGVACDSTNTLMISAG------YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD----------  536 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d----------  536 (764)
                      ..+...+++|+|+.++...      .|.  .|.+++.. +.. ..+......+.-.|+|||+.+++..+.          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678899999999887665      243  45555542 222 333333458889999998888777533          


Q ss_pred             --CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE---EEcCccceEEE-----Eee--CCceEEE
Q 004270          537 --LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI---WDVILARQIDA-----IHV--DVSITAL  604 (764)
Q Consensus       537 --~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i---wd~~~~~~~~~-----~~~--~~~v~~l  604 (764)
                        +.+.+.+++.++...   ...+.|..+.|||||..++... ++.|.+   -.-..|. ...     +..  ...+.++
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence              233333444433322   2346799999999999988765 577777   4444554 111     211  2236889


Q ss_pred             EEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          605 SLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       605 ~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .|.+++.++ ++..+.. ..+|.+.
T Consensus       503 ~W~~~~~L~-V~~~~~~-~~v~~v~  525 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPE-HPVWYVN  525 (591)
T ss_pred             eEecCCEEE-EEecCCC-CceEEEe
Confidence            999999865 4444442 5566653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.38  E-value=0.39  Score=54.07  Aligned_cols=109  Identities=14%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--------eEEEEEc----------------CCCCEEEEEEcCCeEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV  207 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--------i~~~~~s----------------p~~~~la~g~~dg~i~i  207 (764)
                      +.|++++.++.|.-.|.++|+.+.++......        ...+++-                ..+..|+.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            57999999999999999999999988643211        1112221                13458888999999999


Q ss_pred             EEccCCceEEEEeccCCCCE----------------EEEEEeeCCCCEEEEEeC----------CCcEEEEECCCceeee
Q 004270          208 HNVRYDEELVTFTHSMRGAV----------------TALAFSSDGQPLLASGAS----------SGVISIWNLEKRRLQS  261 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v----------------~~l~fs~d~~~~l~sg~~----------dg~i~iwd~~~~~~~~  261 (764)
                      .|.++|+.+..+...  +.|                ++--.--++  .+++|+.          +|.|+-+|.++|+.+-
T Consensus       275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999999876432  211                110011133  4555642          6889999999999887


Q ss_pred             eee
Q 004270          262 VIR  264 (764)
Q Consensus       262 ~~~  264 (764)
                      ...
T Consensus       351 ~~~  353 (764)
T TIGR03074       351 AWD  353 (764)
T ss_pred             EEe
Confidence            765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.37  E-value=0.14  Score=48.59  Aligned_cols=183  Identities=12%  Similarity=0.057  Sum_probs=125.5

Q ss_pred             CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      .....+.+..+|.++-+.+.-|  .|+.+|+.+++.......       ....---+++... ++...-.-.++...+||
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILG-DKLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEEC-CEEEEEEecCCeEEEEc
Confidence            4456777877888777777776  899999999987765542       2222334444443 34444555789999999


Q ss_pred             CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-----CCCeeEEEEcCCCcEEEEEeC
Q 004270          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-----~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      ..+.+.+.++.....-..++  .|++.|+.......++++|..+.+..+++.-.     -..++.+.+- +|...|=.=.
T Consensus       117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            99999999998887777777  67888888888899999999988887776532     2346667776 7777776666


Q ss_pred             CCcEEEEEcCccceEEEEee----------------CCceEEEEEcCCCCeEEEEEe
Q 004270          578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       578 dg~i~iwd~~~~~~~~~~~~----------------~~~v~~l~~sp~g~~lat~~~  618 (764)
                      ...|..-|..+|+.+..+..                ..-.+.+|+.|.++.|..++.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            77888999999999988752                113899999997777766654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.36  E-value=0.0097  Score=47.48  Aligned_cols=96  Identities=24%  Similarity=0.364  Sum_probs=70.5

Q ss_pred             eCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC
Q 004270          146 HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG  225 (764)
Q Consensus       146 ~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~  225 (764)
                      .-++. +.|++|+.|..|++|+  ..+.+.++.. .+.|++++-... ..++.+..+|+|-+|+-  ...+...+.  +.
T Consensus        11 d~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~   81 (111)
T PF14783_consen   11 DGDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--KN   81 (111)
T ss_pred             CCCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--CC
Confidence            33443 7899999999999997  5578888876 567888877776 57899999999999974  344444444  34


Q ss_pred             CEEEEEEe---eCCCCEEEEEeCCCcEE
Q 004270          226 AVTALAFS---SDGQPLLASGASSGVIS  250 (764)
Q Consensus       226 ~v~~l~fs---~d~~~~l~sg~~dg~i~  250 (764)
                      .+.++.+.   .||..-|++|-.+|.|-
T Consensus        82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   82 QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            46666654   34555788998888774

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.074  Score=50.27  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=87.6

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...+.++.|+|+.+ .|++-.....-.++=..+|..+.++...--...-.+.+..++.+.++--.++.+.++.++.....
T Consensus        85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            44599999999999 55555556666666667888888887444455667889888888888888999999888766322


Q ss_pred             cee------eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       304 ~~~------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ...      +............++|.|..+.|+.+-+-.-+.+|.+..
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            111      111112256778999999888888888888899988763

>smart00320 WD40 WD40 repeats

Probab=97.22  E-value=0.0011  Score=41.99  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      ++.+..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456777888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.17  E-value=0.61  Score=52.04  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             EEEEEEcCCeEEEEEccCCceEEEEec--cCCCCEEEEEEeeCC-----CCEEEEEeCCCcEEEEECCCceeeeeee-cc
Q 004270          195 VVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EA  266 (764)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~l~fs~d~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~  266 (764)
                      .++++..+|.+.-+.......+..+..  .....+.|+++.++.     ..+++.++.|+++++..+.....+..+. .+
T Consensus       551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~  630 (1205)
T KOG1898|consen  551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG  630 (1205)
T ss_pred             EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence            445555555555555443333333431  124578899998875     2379999999999999987655554443 23


Q ss_pred             cccCeeEEEEec---CC------CEEEEEcCCCcEEEEEecCCCC
Q 004270          267 HDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       267 h~~~v~~l~~~~---~~------~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      -..++.++.+-+   ++      -+|.+|-..|.+.-.-++.-.+
T Consensus       631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G  675 (1205)
T KOG1898|consen  631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG  675 (1205)
T ss_pred             cCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence            344555555533   22      1455666666555454454444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.14  E-value=0.097  Score=52.84  Aligned_cols=198  Identities=10%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             CEEEEEe-CCCcEEEEeCCC----CeEEEEEcC---CC----CCeEEEEEcCCCCEEEEEEc------CCeEEEEEccCC
Q 004270          152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD  213 (764)
Q Consensus       152 ~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~i~~~~~sp~~~~la~g~~------dg~i~iwd~~~~  213 (764)
                      ++|++.+ .++.|++.|+.+    .++.+.+..   +.    ..-..+-.-|+|+.++++-.      -|.+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            5676665 778899999873    455555542   11    22234455678988887633      267889998887


Q ss_pred             ceEEEEeccC--CCCEEEEEEeeCCCCEEEEEeC--------------------CCcEEEEECCCceeeeeeeccccc-C
Q 004270          214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A  270 (764)
Q Consensus       214 ~~~~~~~~~~--~~~v~~l~fs~d~~~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~h~~-~  270 (764)
                      +.........  ..--...-|.|..+ +++|...                    ..++.+||+.+.+.++++..+..+ .
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            7777766532  22345667777665 7777542                    368999999999999999855444 4


Q ss_pred             eeEEEEecC--CCE-EEEEcCCCcEEEEEecCCCCCceeeE--ec-----------------cCCCCCCeeEEEecCCCE
Q 004270          271 IISLHFFAN--EPV-LMSASADNSIKMWIFDTTDGDPRLLR--FR-----------------SGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       271 v~~l~~~~~--~~~-l~s~~~d~~i~vw~~~~~~~~~~~~~--~~-----------------~~h~~~v~~i~~~~~~~~  328 (764)
                      +..+.|..+  ..+ ++.+....+|..|--+ .++.+...+  ..                 ..-..-|+.|..+.|.++
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            667888665  333 3333333344333221 122211111  11                 111345789999999999


Q ss_pred             EEEEe-CCCcEEEEEeeccccccc
Q 004270          329 ILSAG-QDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       329 l~s~~-~dg~i~i~d~~~~~~~~~  351 (764)
                      |.... ..|.+|.||+......+.
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcE
Confidence            87665 689999999987655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.13  E-value=0.00065  Score=61.01  Aligned_cols=143  Identities=18%  Similarity=0.187  Sum_probs=86.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270          154 VIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f  232 (764)
                      +..-+.+|.|.-++++.-+.-..- .-|...   ...-..+..+++|+.+|.|.+|+.................|.++--
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            444566777777776543322111 111111   1222234678999999999999987222221111111233433332


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc-cCeeEEEEecCCCEEEEE--cCCCcEEEEEecCC
Q 004270          233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT  300 (764)
Q Consensus       233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--~~d~~i~vw~~~~~  300 (764)
                      ..+...+..++..+|.|+.|++.-++.+...- .|. .++..+..+..+..++.+  |.|..++.|++..-
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            22222288899999999999999888877776 676 566666666666677777  77777888876543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.25  Score=46.41  Aligned_cols=154  Identities=13%  Similarity=0.085  Sum_probs=87.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecC------------------CcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          424 PTAVKACTISACGNFAVLGTAG------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                      .-....+.+.+||+.++++...                  -.+.+.|..+|..+.....+.    ..+...|..++..+|
T Consensus       161 GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~----~l~~lSiRHld~g~d  236 (366)
T COG3490         161 GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA----SLRQLSIRHLDIGRD  236 (366)
T ss_pred             CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch----hhhhcceeeeeeCCC
Confidence            3455678888999988876331                  123334444444443332110    145667899999999


Q ss_pred             CCEEEEEeCCCe-----EEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEE
Q 004270          486 NTLMISAGYHGD-----IKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVR  551 (764)
Q Consensus       486 ~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~  551 (764)
                      |+.++.+-..|.     -.+=-...++.+..+...        ..|-+++.+.+..+++..+- .+...+||..+|..+.
T Consensus       237 gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         237 GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            987776654332     111122344444444332        55778888877777766655 4567899999998876


Q ss_pred             EeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      .-.-.  ....++--  ..=++..+.+|.+..+.
T Consensus       317 ~a~l~--daaGva~~--~~gf~vssg~G~~~~~s  346 (366)
T COG3490         317 EAALP--DAAGVAAA--KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             ccccc--ccccceec--cCceEEecCCceEEecc
Confidence            53311  12222322  22244455677777774

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.2  Score=47.54  Aligned_cols=165  Identities=9%  Similarity=0.088  Sum_probs=112.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .+-...++++.|+|+.+.|.+......-.|+=-..|+.+.++....-...-.+.+..+|+ +.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence            444566999999999999998888888888877889999988765445667788888887 6666667888888877655


Q ss_pred             eeeeeee--------ccc-ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-------CCCCeeEE
Q 004270          258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR  321 (764)
Q Consensus       258 ~~~~~~~--------~~h-~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~  321 (764)
                      .......        ..+ ....-.++|.|....|+.+-.-+-+.++.+...... -.......+       -..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence            2221111        112 556789999999999999888888888877643211 111111111       23567788


Q ss_pred             Eec-CCCEEEEEeCCCcEEEEEee
Q 004270          322 FYA-NGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       322 ~~~-~~~~l~s~~~dg~i~i~d~~  344 (764)
                      |++ .+..++-+.+++.+.-.|..
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC
Confidence            887 45555556666666555543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.98  E-value=0.53  Score=48.87  Aligned_cols=148  Identities=16%  Similarity=0.181  Sum_probs=85.0

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (764)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (764)
                      ...+....+.-.+   .+.+|+.+| +..||..+++.++.-.... .+|..+..+-.+ .|.+|+.+| |.+.+.+..+.
T Consensus       164 d~~V~aLv~D~~g---~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~  237 (671)
T COG3292         164 DTPVVALVFDANG---RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRA  237 (671)
T ss_pred             CccceeeeeeccC---cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccc
Confidence            3444455555544   688999988 8889999998887665543 677777777766 467787766 67777665332


Q ss_pred             EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc--ccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      ......-..+.|..+.=..+|.  +-.|+.+|..+ ..+....+......-|  .+.|.++....+|. |-+++.++.++
T Consensus       238 sn~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~  313 (671)
T COG3292         238 SNWGPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR  313 (671)
T ss_pred             cccCCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence            2222222244565555555554  66677666443 3333333332222122  23456666555664 55555555444


Q ss_pred             E
Q 004270          294 M  294 (764)
Q Consensus       294 v  294 (764)
                      +
T Consensus       314 ~  314 (671)
T COG3292         314 Y  314 (671)
T ss_pred             E
Confidence            3

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.014  Score=59.26  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=97.8

Q ss_pred             EEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCE-----EEEEeCCCcEEEEeCCC-Ce-EEEEEc
Q 004270          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK-----VIVGSQEGSLQLWNIST-KK-KLYEFK  178 (764)
Q Consensus       106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----l~~~~~dg~i~iwd~~~-~~-~~~~~~  178 (764)
                      |.++.....++--|++.++.    +.+.+++.. +..+-+.|+.....     -++|-.++.|.-||.+- ++ .+..-+
T Consensus       349 l~~~~~~~~l~klDIE~GKI----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             eeCCCCcCcceeeeccccee----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            34445556688889999988    788887776 44555666654332     45677788899999872 22 222222


Q ss_pred             CC----CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          179 GW----GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       179 ~h----~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      +|    .....|.+-..+| +||+|+.+|.|++||- .+....+...+...+|..+..+.||+.+|+|+  +..+.+.++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence            32    3455666666665 8999999999999996 67766666666678999999999999655554  567777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.97  E-value=0.36  Score=45.82  Aligned_cols=178  Identities=13%  Similarity=0.073  Sum_probs=114.9

Q ss_pred             EEEE-e-CCEEEEEecCC--cEEEEEccCCcccccceeeEecCC-ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe
Q 004270           98 LLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK  172 (764)
Q Consensus        98 ~l~~-~-g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~  172 (764)
                      .+.+ + |..+-|.+.-|  .|+.+|+.+++.    ......+. -+.-.+....+.   .....-.++...+||.++.+
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d~---l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGDK---LYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETTE---EEEEESSSSEEEEEETTTTE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECCE---EEEEEecCCeEEEEccccce
Confidence            4556 4 55566766655  599999999987    55555554 344445555443   34445678899999999999


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC----CCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----RGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      .+.++.-. +.=+.++  .+++.|+.......+..+|..+.+...++....    -..+.-+.|- +|. +.|=.-....
T Consensus       122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~  196 (264)
T PF05096_consen  122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR  196 (264)
T ss_dssp             EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred             EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence            99988643 3335555  567778877778899999998888777666321    1245667776 666 6666667788


Q ss_pred             EEEEECCCceeeeeeec-----------cc---ccCeeEEEEecCCCEEEEEc
Q 004270          249 ISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~-----------~h---~~~v~~l~~~~~~~~l~s~~  287 (764)
                      |...|..+|+....+..           .+   ..-.+.+++.|....|...|
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999999988877641           01   24578999999877655554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.94  E-value=0.036  Score=56.83  Aligned_cols=89  Identities=13%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-----------------CC
Q 004270          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-----------------QP  238 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-----------------~~  238 (764)
                      .+......+.+++.+|.+++.|+...-|+|.++|+.++..++.+++-....+.-+.....+                 ..
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            3445567789999999999888877779999999999888777665422222222211111                 11


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeee
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      +++-+-.-|.|.||++++|..+..+.
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEE
Confidence            33445578899999998887776665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.84  E-value=1.3  Score=50.12  Aligned_cols=71  Identities=8%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCC-------EEEEEEee----------------CCCCEEEEEeCCCcE
Q 004270          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA-------VTALAFSS----------------DGQPLLASGASSGVI  249 (764)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------v~~l~fs~----------------d~~~~l~sg~~dg~i  249 (764)
                      +..|.+++.++.|.-.|.++|+.+-++.......       .+.+++..                .+. .++.++.|+.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence            5678888888999999999999998886532110       12233321                122 57778889999


Q ss_pred             EEEECCCceeeeeee
Q 004270          250 SIWNLEKRRLQSVIR  264 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~  264 (764)
                      .-.|.++|+.+..+.
T Consensus       273 iALDA~TGk~~W~fg  287 (764)
T TIGR03074       273 IALDADTGKLCEDFG  287 (764)
T ss_pred             EEEECCCCCEEEEec
Confidence            999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.76  E-value=0.14  Score=49.50  Aligned_cols=144  Identities=13%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             cEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-ccCCeEE-
Q 004270          476 EVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRMV-  550 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d-~~~~~~~-  550 (764)
                      .+...+++++++.++...   ....+.++.  .+...........+..-.|++++...++...+...+++. ..+++.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999998877665   233455554  333333333445788889999988888877777777773 3333221 


Q ss_pred             EEeec--CCCCeeEEEEcCCCcEEEEEe---CCCcEEEEEcC---cc---ceEEEEe----eCCceEEEEEcCCCCeEEE
Q 004270          551 RKFEG--HTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI---LA---RQIDAIH----VDVSITALSLSPNMDVLAT  615 (764)
Q Consensus       551 ~~~~~--h~~~i~~l~~s~dg~~l~s~s---~dg~i~iwd~~---~~---~~~~~~~----~~~~v~~l~~sp~g~~lat  615 (764)
                      .....  -.+.|+++.+||||..++...   .++.|.|=-+.   .|   .+...+.    ....+++++|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            12221  112899999999999877655   35777777554   23   1111111    1345999999999998887


Q ss_pred             EEeCCC
Q 004270          616 AHVDQN  621 (764)
Q Consensus       616 ~~~d~~  621 (764)
                      +...+.
T Consensus       183 ~~~~~~  188 (253)
T PF10647_consen  183 GRSAGG  188 (253)
T ss_pred             eCCCCC
Confidence            776653

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.75  E-value=0.0048  Score=55.61  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCC-CeeeeEecC-cceEE-EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCee
Q 004270          486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRIT  561 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-~~i~  561 (764)
                      +..++.|+.+|.|.+|..... ......... ..|.+ +.--.++.+..+++.||.||.|++.-.+.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            467889999999999987721 111111111 23322 2333456688999999999999999988888877787 5555


Q ss_pred             EEEEcCCCcEEEEE--eCCCcEEEEEcC
Q 004270          562 DFCFSEDGKWLLSS--GMDGSLRIWDVI  587 (764)
Q Consensus       562 ~l~~s~dg~~l~s~--s~dg~i~iwd~~  587 (764)
                      .+..+..+++|+.+  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            55555566666666  666666666655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.72  E-value=0.7  Score=45.52  Aligned_cols=273  Identities=15%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             CCcceEEEEEeCCeEEEEECCeEEEEe---cCce-EE-Eeccc---ccceEEEEEeCCEEEEEecCCcEEEEEccCCccc
Q 004270           55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQ-VA-TWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN  126 (764)
Q Consensus        55 ~~~~I~~~~~~~~~~~~a~g~~i~vw~---~~~~-~~-~~~~h---~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~  126 (764)
                      ...++..|+|..+..-.+.|..=.++.   -++. .. .....   .-...+|.+.++....++..+ +.+-..+.++. 
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~t-   92 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKT-   92 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred             CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCC-
Confidence            456888888875433333343312232   1221 11 11111   234567777766666666555 33333444443 


Q ss_pred             ccceee-EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          127 LAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       127 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      ...+.. ...+.......++. +.   .+..++..|.|..=. +.|+.-.. ...-.+.+..+.-+++|++++++..-..
T Consensus        93 W~~v~l~~~lpgs~~~i~~l~-~~---~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   93 WERVPLSSKLPGSPFGITALG-DG---SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             -EE----TT-SS-EEEEEEEE-TT---EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             cEEeecCCCCCCCeeEEEEcC-CC---cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            111110 01112222222232 22   344445556443322 33433222 3344678899999999999999876555


Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC-CCceeeee-ee-c-ccccCeeEEEEecCC
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV-IR-E-AHDNAIISLHFFANE  280 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~-~~~~~~~~-~~-~-~h~~~v~~l~~~~~~  280 (764)
                      ..-|+--.. .-..........|.+|.|.|++. +.+ ....|.|+.=+. ...+.-.. +. . ...-.+..++|.+++
T Consensus       168 ~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  168 YSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             EEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             EEEecCCCc-cceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            567764321 12222222367899999999987 444 447888888772 22221111 11 0 123357899999988


Q ss_pred             CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      ...++|+. |.+.+ ..+.+ ...+..+....-....+.+.|.++.+ -+..+.+|.|.-|
T Consensus       245 ~~wa~gg~-G~l~~-S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  245 EIWAVGGS-GTLLV-STDGG-KTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEST-T-EEE-ESSTT-SS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred             CEEEEeCC-ccEEE-eCCCC-ccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence            77776664 44432 22222 22233222234456788999987654 4445667866554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.0067  Score=66.72  Aligned_cols=103  Identities=20%  Similarity=0.482  Sum_probs=75.2

Q ss_pred             CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 004270          192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI  271 (764)
Q Consensus       192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v  271 (764)
                      .+-.++.|+..|.+...|+...-.......+..++|++++|+.+|+ +++.|-.+|.|.+||...++..+.+. .|..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCcc
Confidence            4457889999999998887653111111223367999999999999 89999999999999999999988887 566655


Q ss_pred             eEEE---EecCCCEEEEEcCCCcEEEEEec
Q 004270          272 ISLH---FFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       272 ~~l~---~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      +++-   +..++..++++...|.  +|.+.
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            5544   3445557777777665  66543

>PHA02713 hypothetical protein; Provisional

Probab=96.62  E-value=0.13  Score=56.24  Aligned_cols=190  Identities=11%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             CEEEEEeCC------CcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEE
Q 004270          152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF  219 (764)
Q Consensus       152 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~  219 (764)
                      ...++|+.+      ..+..||..+.+-. .+..-. ..-......-++++.+.|+.++     .+..||..+++-...-
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            345556543      34778887766421 111111 1111122233567778887653     4788998766432211


Q ss_pred             eccC-CCCEEEEEEeeCCCCEEEEEeCCC-----------------------cEEEEECCCceeeeeeecccccCeeEEE
Q 004270          220 THSM-RGAVTALAFSSDGQPLLASGASSG-----------------------VISIWNLEKRRLQSVIREAHDNAIISLH  275 (764)
Q Consensus       220 ~~~~-~~~v~~l~fs~d~~~~l~sg~~dg-----------------------~i~iwd~~~~~~~~~~~~~h~~~v~~l~  275 (764)
                      .... ......+  .-+|. +.+.|+.++                       .+..||..+.+-...-. -.......-.
T Consensus       384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~  459 (557)
T PHA02713        384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGV  459 (557)
T ss_pred             CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcE
Confidence            1111 1111122  23566 777777542                       47778887764332221 1111111111


Q ss_pred             EecCCCEEEEEcCCC------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC--cEEEEEeeccc
Q 004270          276 FFANEPVLMSASADN------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQDQ  347 (764)
Q Consensus       276 ~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~i~i~d~~~~~  347 (764)
                      ..-++++.+.||.++      .+..||.++. ..+..+..+.........+.+  +++..++||.++  ++..||..+++
T Consensus       460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            223566666676542      2445654430 344554444333333333332  778888999888  67777777665


Q ss_pred             cc
Q 004270          348 QS  349 (764)
Q Consensus       348 ~~  349 (764)
                      -.
T Consensus       537 W~  538 (557)
T PHA02713        537 WN  538 (557)
T ss_pred             cc
Confidence            43

>PRK13684 Ycf48-like protein; Provisional

Probab=96.59  E-value=1  Score=45.77  Aligned_cols=273  Identities=10%  Similarity=0.039  Sum_probs=132.2

Q ss_pred             CcceEEEEEeCCeEEEEECCeEEEEe---cCceEEE----ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270           56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        56 ~~~I~~~~~~~~~~~~a~g~~i~vw~---~~~~~~~----~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      ...+.+|+|..+..-.+.|..=.||.   -++.=..    +......+.++.+.++....++..|.|  +.-.++-....
T Consensus        45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i--~~S~DgG~tW~  122 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLL--LHTTDGGKNWT  122 (334)
T ss_pred             CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceE--EEECCCCCCCe
Confidence            56788899875544444554433442   2221111    111233466777765544444555543  33333322221


Q ss_pred             ceeeE-ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 004270          129 PVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIH  206 (764)
Q Consensus       129 ~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~  206 (764)
                      .+..- ..........+..+ +   .+..++..|.|..=+ +.|+.-..+. .-...+..+.+.|++.+++++.. |.+.
T Consensus       123 ~~~~~~~~~~~~~~i~~~~~-~---~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~  196 (334)
T PRK13684        123 RIPLSEKLPGSPYLITALGP-G---TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFY  196 (334)
T ss_pred             EccCCcCCCCCceEEEEECC-C---cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEE
Confidence            11110 01111111222222 2   233334445333222 2333322222 22567889999999877766554 6443


Q ss_pred             EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeeEEEEecCCCEE
Q 004270          207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVL  283 (764)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l  283 (764)
                      .-.-..++.-..........++++.+.++++ ++++| ..|.+.+=..+.+..-......   ....+.++.+.+++..+
T Consensus       197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~  274 (334)
T PRK13684        197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW  274 (334)
T ss_pred             EEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence            2211222333333444457899999999998 65554 4676654333444322221101   22357888999887655


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      + ++.+|.+. ...+.. ..++.......-......+.|..+++. +..+..|.|..++
T Consensus       275 ~-~G~~G~v~-~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~  329 (334)
T PRK13684        275 A-GGGNGTLL-VSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV  329 (334)
T ss_pred             E-EcCCCeEE-EeCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence            4 55567554 332322 222222211222345777887766655 4456678777665

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.57  E-value=0.81  Score=44.33  Aligned_cols=115  Identities=12%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             CEEEEEEeeCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe-cCCCC
Q 004270          226 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDG  302 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~-~~~~~  302 (764)
                      .+.+.+.+++++.+.+...  ....++++.  .+.......  ....+....|.+++...+....+...+++.. .....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            6899999999984444442  334455554  333333332  2237888899999876666666666677642 12222


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCCEEEEEe---CCCcEEEEEeec
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ  345 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~i~d~~~  345 (764)
                      ....+... .-...|..++++|||..++...   .++.+.+--+..
T Consensus       101 ~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen  101 EPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             eeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            11222221 1112899999999999887655   346666665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.74  Score=43.63  Aligned_cols=271  Identities=10%  Similarity=0.091  Sum_probs=152.1

Q ss_pred             CCcceEEEEEeCCeEEEEECCe-EEEEecCce-----EEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270           55 LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ-----VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        55 ~~~~I~~~~~~~~~~~~a~g~~-i~vw~~~~~-----~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      .+.-+..+.++.+..|+|-++. +++.|....     +..+.- .+--.++...|++...++.|.-+.+.|+.+..... 
T Consensus        85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~-  162 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-  162 (370)
T ss_pred             hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-
Confidence            4667788899999999998776 999986432     222222 23445666789999999977778889998765421 


Q ss_pred             ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (764)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i  205 (764)
                      ..............++++  +  ++.+++..|+-+.+.|+...   ..+.... ....+.++..+++-.+++...+  -+
T Consensus       163 lagrya~~~~d~~~v~IS--G--n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e--gv  235 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--G--NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE--GV  235 (370)
T ss_pred             eeeeeccCCCCceeEEEe--c--CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc--ce
Confidence            133344444433445554  4  56888888999999998754   3333332 2447888888888777776544  46


Q ss_pred             EEEEccCCceEEEEeccCCCCEEEE-EEeeCCCCEEEEEeCCCcEEEEECCCceeee---eeecccccCeeEEEEecCCC
Q 004270          206 HVHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIWNLEKRRLQS---VIREAHDNAIISLHFFANEP  281 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l-~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~h~~~v~~l~~~~~~~  281 (764)
                      .+-|..+.+....+..-....+.++ .|.-.++ +......+.-+.+-|+++.....   .+. .....-..+...  +.
T Consensus       236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~spfl~ss~~-t~g~~a~gi~ay--~~  311 (370)
T COG5276         236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSPFLSSSLD-TAGYQAAGIRAY--GN  311 (370)
T ss_pred             EEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCCchhcccc-CCCccccceEEe--cC
Confidence            7777776654444432222223232 2222344 55555656666777765542211   111 111122222222  33


Q ss_pred             EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      ++..+..+ ...+-+....    .......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus       312 y~yiadkn-~g~vV~~s~~----s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         312 YNYIADKN-TGAVVDASPP----SMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             eeEeccCC-ceEEEeCCCh----hhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            44444433 2333332222    111111222223334444445567778888888988875

>PHA02713 hypothetical protein; Provisional

Probab=96.50  E-value=0.29  Score=53.70  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=108.9

Q ss_pred             eEEEEecCCCeEEEecCCCCcce--EEEEEeCCeEEEEECC--------eEEEEecCceEEE----ecccccceEEEEEe
Q 004270           37 AFHIYNCAKLNLVLVGPQLPKKI--RALASYRDYTFAAYGN--------HIAVVKRAHQVAT----WSRHSAKVNLLLLF  102 (764)
Q Consensus        37 ~i~iwd~~~~~~~~~~~~~~~~I--~~~~~~~~~~~~a~g~--------~i~vw~~~~~~~~----~~~h~~~v~~l~~~  102 (764)
                      .+..||..+.+-....+ .+.+.  .+++...+.+|++.|.        .+..||.....-.    +............+
T Consensus       273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            56789998876544332 22222  3556667778887663        1667775332111    21112222334456


Q ss_pred             CCEEEEEecCC-----cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----------------
Q 004270          103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----------------  160 (764)
Q Consensus       103 g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----------------  160 (764)
                      |...+.|+.++     ++..||..+.+-..  +..+.......  .+..-++  ...++|+.+                 
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~--~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSY--GMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccc--cEEEECC--EEEEEeCCCccccccccccccccccc
Confidence            77777777654     37888887654311  11211111111  1222344  345556544                 


Q ss_pred             ------CcEEEEeCCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccC-Cce--EEEEeccC
Q 004270          161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEE--LVTFTHSM  223 (764)
Q Consensus       161 ------g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~-~~~--~~~~~~~~  223 (764)
                            ..+..||..+.+=  +..+..  ......+..-++++.++|+.+      ..+..||..+ ++-  +..+... 
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-  502 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-  502 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence                  2477788766532  222211  111222223346666777654      2467899887 442  2222221 


Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCC--cEEEEECCCceeeeeee
Q 004270          224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIR  264 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~  264 (764)
                      ......+.+  +|. +.++|+.+|  .+..||..+.+-.....
T Consensus       503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchhh
Confidence            112222222  566 888999888  77788887776554433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.01  Score=65.39  Aligned_cols=100  Identities=18%  Similarity=0.321  Sum_probs=76.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~  562 (764)
                      .+..++.|+..|.+-..|....-.  .+-....+++++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            455788888888888888765311  222334589999999999999999999999999999999999998877776665


Q ss_pred             EEE---cCCCcEEEEEeCCCcEEEEEc
Q 004270          563 FCF---SEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       563 l~~---s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +-+   ..++..+.++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            543   445567778777775  6654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.48  E-value=0.49  Score=43.16  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             EEEEEECCCCCEEE-EEeCCCeEEEEE--CCCCCee-----eeEec-----CcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          477 VVGVACDSTNTLMI-SAGYHGDIKVWD--FKGRDLK-----SRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       477 v~~l~~~~~~~~l~-s~~~dg~v~iwd--~~~~~~~-----~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                      -++++|+.+.+.+. +-+.+-.|.-||  ..+|...     ..++.     +-..-.+++..+|.+.++....++|..+|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35788888776554 445667787788  4555322     22221     12223456667889999999999999999


Q ss_pred             ccCCeEEEEeecCCCCeeEEEEcC
Q 004270          544 VVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       544 ~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      ..+|+.+.++.-.+..|++++|--
T Consensus       240 p~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecC
Confidence            999999999998999999999954

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.46  E-value=0.011  Score=39.11  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (764)
                      ...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999998 4544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=0.087  Score=58.75  Aligned_cols=150  Identities=7%  Similarity=-0.012  Sum_probs=96.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCc---cccccccccCcEEEEEECCCC-CEEEEEeCCCeE
Q 004270          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI  498 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v  498 (764)
                      ..+..+...+|+...++-....  .|..||+.+-.........   ..+..........++.|.|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566677778877665554433  8889998764433211100   000111223345667777753 235566788899


Q ss_pred             EEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC----CCCeeEEEEcCCCcEEE
Q 004270          499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL  573 (764)
Q Consensus       499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h----~~~i~~l~~s~dg~~l~  573 (764)
                      ++..+... .....+......++++|+|.|+.+++|..+|++.-|... ++..+.+.+.    ..+|.+++|-..-.||+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            88876633 333445666889999999999999999999999988653 3444444332    36799999988777777


Q ss_pred             EE
Q 004270          574 SS  575 (764)
Q Consensus       574 s~  575 (764)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.43  E-value=0.71  Score=42.16  Aligned_cols=142  Identities=9%  Similarity=0.138  Sum_probs=86.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEE-
Q 004270          475 GEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD-  543 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d-  543 (764)
                      ...+.-..+|+|++.+-.-.|         |.++.|-.. ++....+..-.--..++|+.+.+.+... +.+..|.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            344556678999985432222         334444322 1221122222334568888877766544 5567787777 


Q ss_pred             -ccCCeE-----EEEeecC---C-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCC-CC
Q 004270          544 -VVALRM-----VRKFEGH---T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MD  611 (764)
Q Consensus       544 -~~~~~~-----~~~~~~h---~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~-g~  611 (764)
                       ..+|..     +..++..   . ..--.++...+|.+.+++-..++|...|..+|+.+..++.+.+ +++++|--- -+
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence             555532     3333321   1 1123456667888888888889999999999999999998876 999999642 23


Q ss_pred             eEEEEE
Q 004270          612 VLATAH  617 (764)
Q Consensus       612 ~lat~~  617 (764)
                      .|.++.
T Consensus       268 ~~yvT~  273 (310)
T KOG4499|consen  268 ILYVTT  273 (310)
T ss_pred             EEEEEe
Confidence            444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.36  E-value=1.5  Score=45.29  Aligned_cols=66  Identities=11%  Similarity=0.017  Sum_probs=37.2

Q ss_pred             cCeeEEEEecCCCEEEEEc-----------CCC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          269 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~-----------~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      .....++|.++|+++++-.           ..+ .|.+++-...++.......+......+..+++.++|  |+.+....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3567788888888766643           122 555554333333333333333344567889999888  44444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.36  E-value=1.7  Score=45.68  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=76.5

Q ss_pred             ccEEEEeCCCCC--CEEEEEeCCCcEEEEeCC-----CCeEEEEEcCC---CC--CeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270          140 TPTCIMHPDTYL--NKVIVGSQEGSLQLWNIS-----TKKKLYEFKGW---GS--SISSCVSSPALDVVAVGCSDGKIHV  207 (764)
Q Consensus       140 ~~~~~~~p~~~~--~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h---~~--~i~~~~~sp~~~~la~g~~dg~i~i  207 (764)
                      +..+.|.|....  ..+++......|.+|-+.     +++.+..-..+   .-  --..+.|+|....|++-+....-.+
T Consensus        59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~  138 (671)
T PF15390_consen   59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL  138 (671)
T ss_pred             eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence            344556554311  245566677889999764     23333322211   11  1245789999999998888776678


Q ss_pred             EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      +++..+...........+-|.|.+|.+||+.++++.+..=.-++||-..
T Consensus       139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            8887666555444444789999999999996666656566778998543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.23  E-value=2  Score=45.18  Aligned_cols=150  Identities=13%  Similarity=0.172  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCCEEEEEE--cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC----CCEEEEEeCCCcEEEEECC
Q 004270          182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG----QPLLASGASSGVISIWNLE  255 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~----~~~l~sg~~dg~i~iwd~~  255 (764)
                      .++..++|....+.+.+.-  .+|.+++=|   .+.+.+|     ..|..++|.|-+    ..+||+ .....|.+|.+.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEE-eccceEEEEEec
Confidence            4677888886555555542  234333322   2233443     348899999853    335554 457899999875


Q ss_pred             -----Cceeeeeeeccccc----CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          256 -----KRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       256 -----~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                           .++.+.........    --..+.|+|....|+.-.....-.++++.....  +. +.--...+.|.|.+|.+||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rV-kaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RV-KADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eE-EEeccCCceEEEEEecCcC
Confidence                 22322222101111    234678999998887766655445555544332  22 2223567889999999999


Q ss_pred             CEEEEEeCC-CcEEEEEe
Q 004270          327 RHILSAGQD-RAFRLFSV  343 (764)
Q Consensus       327 ~~l~s~~~d-g~i~i~d~  343 (764)
                      +.|+.+-.. =.-.+||-
T Consensus       168 ~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CEEEEEeCCeEEEEEecC
Confidence            988876433 23456764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.23  E-value=0.22  Score=51.55  Aligned_cols=143  Identities=15%  Similarity=0.164  Sum_probs=82.8

Q ss_pred             CcEEEEEECCCCCEEEEEe-----------CCC-eEEEEECCC--CCe--eeeEecC-cceEEEEEeecCCEEEEEeCCC
Q 004270          475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEVG-CSLVKIVYHRVNGLLATVADDL  537 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~-~~i~~~~~s~~~~~la~~~~d~  537 (764)
                      .....|+|+++|+++++-.           ..+ .|.+++-.+  ++.  ...+... .....+++.+++  |.+++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999999877753           223 677776442  322  2233222 456889999888  44444444


Q ss_pred             eEEEEEccC-------CeE-EEEeec----CCCCeeEEEEcCCCcEEEEEeCC-------------------CcEEEEEc
Q 004270          538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV  586 (764)
Q Consensus       538 ~i~v~d~~~-------~~~-~~~~~~----h~~~i~~l~~s~dg~~l~s~s~d-------------------g~i~iwd~  586 (764)
                      ..++.|...       .+. +..+..    +......++|.|||++.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445432       112 222322    23447789999999877755521                   34555555


Q ss_pred             CccceEEEE-eeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          587 ILARQIDAI-HVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       587 ~~~~~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      .+++. ..+ ........++|+|+|+++++-..+.
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEccCCC
Confidence            44443 333 2333478999999999987655433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=96.01  E-value=3.7  Score=46.37  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=38.9

Q ss_pred             CEEEEEEeeCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270          226 AVTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      .+..+.++|||+.++++.+.+|    .|++.|+.+++.+....   ...-..++|.+|++.|+....
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---DNVEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---cCcceEEEEeeCCCEEEEEEe
Confidence            4677889999994444433333    58899998886443322   111256999999987766654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=1.5  Score=41.64  Aligned_cols=234  Identities=12%  Similarity=0.085  Sum_probs=140.3

Q ss_pred             CcceEEEEEeCCeEEEEECCeEEEEecCce------E-EEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270           56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ------V-ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        56 ~~~I~~~~~~~~~~~~a~g~~i~vw~~~~~------~-~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      .+.|.++....+.-+++.|..+.+.|....      . ...-.-.+-+..+.+.+++...+..+.-++|.|+++.+... 
T Consensus        42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~-  120 (370)
T COG5276          42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT-  120 (370)
T ss_pred             cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcc-
Confidence            378899999999999999999777663211      1 11222334555666789999999999999999999876521 


Q ss_pred             ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (764)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i  205 (764)
                      .+..+...   -..-.+.-.+  ++.+++.-+.-+.+.|+.+.   .+...+......-..++.|  |++-.++..|+-+
T Consensus       121 ~~~~lnt~---gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL  193 (370)
T COG5276         121 LIGFLNTD---GYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL  193 (370)
T ss_pred             eeccccCC---ceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence            11222111   2233345556  77888886666888888654   3444444444444556665  5666777788999


Q ss_pred             EEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEE-EEecCCCEE
Q 004270          206 HVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL  283 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~l  283 (764)
                      .+.|+.......-+.. .....+.++..+++.. +++..  +--+.+-|..+.+....+-.-....+.++ .+.-.+++.
T Consensus       194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~  270 (370)
T COG5276         194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA  270 (370)
T ss_pred             EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc--ccceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence            9999876543222221 1123688888887755 45443  33477777766653333321112222222 222345566


Q ss_pred             EEEcCCCcEEEEEecCC
Q 004270          284 MSASADNSIKMWIFDTT  300 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~  300 (764)
                      ..+..+.-+.+-|+..+
T Consensus       271 Yvadga~gl~~idisnp  287 (370)
T COG5276         271 YVADGAKGLPIIDISNP  287 (370)
T ss_pred             eeeccccCceeEeccCC
Confidence            66666666666666554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.92  E-value=0.027  Score=37.37  Aligned_cols=35  Identities=11%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270          557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (764)
Q Consensus       557 ~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  592 (764)
                      ...|..++|+|...+||.++.||.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            356999999999999999999999999998 55543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.91  E-value=2.6  Score=43.72  Aligned_cols=143  Identities=17%  Similarity=0.236  Sum_probs=92.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCC--c-----
Q 004270          152 NKVIVGSQEGSLQLWNISTKK-----KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYD--E-----  214 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~--~-----  214 (764)
                      .+|++|+.+|.++||+.....     ++.+.+- ..+|..++.-+     +...||+ -.-..+.||.+...  .     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            689999999999999985433     3333332 67888887543     2345666 44578889988421  1     


Q ss_pred             --e-EEEEeccCCCCEEEEEEeeC----CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270          215 --E-LVTFTHSMRGAVTALAFSSD----GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       215 --~-~~~~~~~~~~~v~~l~fs~d----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                        . ...+.+........++.-|-    |+.++.+-+.||.+.+++-+.......+.  ..--...+.|.+....+++++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEec
Confidence              1 11222222334445554442    34588899999999999976655444443  233344577888888899999


Q ss_pred             CCCcEEEEEec
Q 004270          288 ADNSIKMWIFD  298 (764)
Q Consensus       288 ~d~~i~vw~~~  298 (764)
                      .+..+.-|.+.
T Consensus       194 ss~~l~~Yky~  204 (418)
T PF14727_consen  194 SSWTLECYKYQ  204 (418)
T ss_pred             CceeEEEecHH
Confidence            88888888653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.70  E-value=0.97  Score=49.50  Aligned_cols=222  Identities=13%  Similarity=0.119  Sum_probs=121.9

Q ss_pred             CeEEEEEEeC------CeEEEEecCCCeEEEec-CCCCcceEEEEEeCCeEEEEECCe--------EEEEecCce----E
Q 004270           26 TENFVTVSVG------KAFHIYNCAKLNLVLVG-PQLPKKIRALASYRDYTFAAYGNH--------IAVVKRAHQ----V   86 (764)
Q Consensus        26 ~~~~~~~~~~------~~i~iwd~~~~~~~~~~-~~~~~~I~~~~~~~~~~~~a~g~~--------i~vw~~~~~----~   86 (764)
                      +..+++++..      .++..||..++.-.... ...+..-.++++.++.+|++.|.+        +..||....    +
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            4455565555      56889999998554443 234555678888888888887643        666775332    2


Q ss_pred             EEecccccceEEEEEeCCEEEEEecCCc-----EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-
Q 004270           87 ATWSRHSAKVNLLLLFGEHILSIDIDGN-----MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-  160 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~~g~~l~s~~~dg~-----v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-  160 (764)
                      ..+............+|..-|.|+.||.     |-.||..+.+-..  +....  .......+..-.+  ...++|+.+ 
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~--~~r~~~gv~~~~g--~iYi~GG~~~  438 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML--TRRSGHGVAVLGG--KLYIIGGGDG  438 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--cCCCC--cceeeeEEEEECC--EEEEEcCcCC
Confidence            2233444444445567888888888875     7778877765421  11111  1111222233344  345556644 


Q ss_pred             -----CcEEEEeCCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEE
Q 004270          161 -----GSLQLWNISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVT  228 (764)
Q Consensus       161 -----g~i~iwd~~~~~~~--~~~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~  228 (764)
                           .++..||..+.+-.  ..+..-.....  ...-++.+.++|+.|+     +|..||..+.+-...-..  ..+..
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~~rs  514 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TSPRS  514 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC--ccccc
Confidence                 35677887765422  22221111111  2233567788888776     377788877664433211  11222


Q ss_pred             EEEEee-CCCCEEEEEeCCC-----cEEEEECCCce
Q 004270          229 ALAFSS-DGQPLLASGASSG-----VISIWNLEKRR  258 (764)
Q Consensus       229 ~l~fs~-d~~~~l~sg~~dg-----~i~iwd~~~~~  258 (764)
                      ...... ++. +.++|+.||     +|..||..+.+
T Consensus       515 ~~g~~~~~~~-ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  515 AVGVVVLGGK-LYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccEEEECCE-EEEEecccCccccceeEEcCCCCCc
Confidence            222222 344 778888665     46666665543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.64  E-value=0.42  Score=51.72  Aligned_cols=111  Identities=11%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEE--cCCCcEEEEEeCCCcEEEEEc------
Q 004270          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------  586 (764)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~--s~dg~~l~s~s~dg~i~iwd~------  586 (764)
                      ..++.+.-|.-++..++-++...+.|||...+....+-. ...+.|.++.|  .|||+.+++.|..+.|.++.-      
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344455555556665665666789999999887543322 34678999988  569999999999999999853      


Q ss_pred             ---CccceEEEEee----CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       587 ---~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                         ++-.+++.+..    +.+|.+..|.++|.+++.++ +  .+++++-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-N--qlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-N--QLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-C--EEEEECCC
Confidence               22234554432    23599999999998776654 2  48888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.63  E-value=3.5  Score=43.19  Aligned_cols=473  Identities=14%  Similarity=0.102  Sum_probs=216.5

Q ss_pred             cceEEEEEeCC-eEEEEECCeEEEEecCceEEEecccccceEEEEEeCCEEE-EEecCCcEEEEEccCCcccccceeeEe
Q 004270           57 KKIRALASYRD-YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVK  134 (764)
Q Consensus        57 ~~I~~~~~~~~-~~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~-s~~~dg~v~vWd~~~~~~~~~~~~~~~  134 (764)
                      .-|++|+...| +.++|+-..+.-|+-......+.+|  ++..+.+++..++ ..+..|.|.+=.......     ..+.
T Consensus        40 nv~~~~~q~~dGylW~at~~G~vrY~g~~~f~vf~gn--~~~~ly~~gtr~Ll~s~~~gll~lga~~~~d~-----~q~y  112 (671)
T COG3292          40 NVVRAMLQDADGYLWLATSDGLVRYDGPNDFGVFPGN--SVLGLYPDGTRLLLVSSENGLLALGALGRRDF-----IQVY  112 (671)
T ss_pred             HHHHHHhhccCCcEEEEecccEEEecCCcccccccCC--ceEEEecCcceEEeeeccchhhhhccccceec-----eeec
Confidence            44677777777 6677776666666543333344444  5777777765433 334444343333221111     0000


Q ss_pred             cCCccccEEEEeCCCCC----CEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 004270          135 LDDKFTPTCIMHPDTYL----NKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVH  208 (764)
Q Consensus       135 ~~~~~~~~~~~~p~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iw  208 (764)
                       ......+.+.|+.+.+    +.+-....+.-+..-|....+.+...+  .-..+|.++.+.-.| .+-+|+.|| +..|
T Consensus       113 -r~~~~~s~a~h~lt~lIddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~~g-~lWvgT~dG-L~~f  189 (671)
T COG3292         113 -RGGVAKSDALHELTALIDDAQLLWLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDANG-RLWVGTPDG-LSYF  189 (671)
T ss_pred             -ccceeeccCccccccccchhhhhhhccccCCccccccchhhhccCccccccCccceeeeeeccC-cEEEecCCc-ceEE
Confidence             1111122222322210    111112222222222322222222111  125678888888887 566788877 6778


Q ss_pred             EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       209 d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      |..+++.+..-......+|..+.-+-.|+  |.+|+.+| +.+.+.+..+.......-..+.|..+.-..+| .+-.|+.
T Consensus       190 d~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTe  265 (671)
T COG3292         190 DAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTE  265 (671)
T ss_pred             ccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeec
Confidence            88888877766655446788888777786  77787665 77777665333222221122233333322233 3444444


Q ss_pred             CCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          289 DNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       289 d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      .|-   |........ ..+.....--...|.++....+|. +-+++.+|.+++-+..                       
T Consensus       266 nGl---~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-----------------------  318 (671)
T COG3292         266 NGL---WRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-----------------------  318 (671)
T ss_pred             ccc---eeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-----------------------
Confidence            442   222222111 111111111223455555555664 5555556544443211                       


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc--CCCEEEEEecC
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAG  445 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~~  445 (764)
                                           |.........++                        ..+..++..|  .+..+-...+.
T Consensus       319 ---------------------w~~ma~in~~dG------------------------~v~~~~~~a~~ll~~~v~~~ns~  353 (671)
T COG3292         319 ---------------------WKRMAVINDSDG------------------------GVSQYEAVAPALLSWGVRQLNSI  353 (671)
T ss_pred             ---------------------hhheeeeecCCC------------------------chhhhhccCchhcccceeecccc
Confidence                                 000000000000                        0000011111  11112222222


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEec--CcceEEEE
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEV--GCSLVKIV  522 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~--~~~i~~~~  522 (764)
                      |.+.+-+-.+|.......       ......|+.++++.+++ +-.++...-+..|+-++ +........  .+++..+.
T Consensus       354 g~L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aiv  425 (671)
T COG3292         354 GELMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIV  425 (671)
T ss_pred             ceEEEecCCCCcEEEEee-------eccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeee
Confidence            333333333443333321       12334566677777555 44455443344555555 333333222  26777888


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCeEEEEe--ecC---CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKF--EGH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV  597 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~--~~h---~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  597 (764)
                      =.|+++ |..|+.+|.++. +.+.++....+  ..|   .+.|..+..-|+|++-+.++ +| |..|+-+.....-.+..
T Consensus       426 ed~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~  501 (671)
T COG3292         426 EDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDL  501 (671)
T ss_pred             ecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccc
Confidence            888888 778888876654 33333332222  222   24577888999998654333 44 67887654332222222


Q ss_pred             CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          598 DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       598 ~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ...-.-..+--.++++-.+- +. ++.-|.+.
T Consensus       502 ~~q~qy~f~~~~~d~vw~~~-~R-g~vr~r~s  531 (671)
T COG3292         502 TGQRQYSFVPVGGDEVWVHR-LR-GLVRWRHS  531 (671)
T ss_pred             cceeeEEEEEccCceEeeee-ec-eeeeeccC
Confidence            21111111333556665544 33 35556654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.59  E-value=0.81  Score=50.10  Aligned_cols=150  Identities=13%  Similarity=0.189  Sum_probs=97.1

Q ss_pred             CCEEEEEecCCcEEEEECcCCcccce------ecCcccc--------ccccccCcEEEEEECC--CCCEEEEEeCCCeEE
Q 004270          436 GNFAVLGTAGGWIERFNLQSGISRGS------YLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK  499 (764)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~------~~~~~~~--------~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~  499 (764)
                      +++++++. .+.|.+|+.........      +...+..        ........|+.|.+..  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            77777765 77999999865433221      1000000        0011223466665544  447889999999999


Q ss_pred             EEECCC-------C-------------CeeeeEecCcceEEEEEe--ecCCEEEEEeCCCeEEEEEccCC--eE-EEEee
Q 004270          500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE  554 (764)
Q Consensus       500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~d~~i~v~d~~~~--~~-~~~~~  554 (764)
                      +|.+++       .             ++...+..+...+.++++  ...+++|+++....|.||-....  +. ...-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            996521       0             122334455788999999  88899999999999988865442  11 11111


Q ss_pred             cCCCCeeEEEEcCCC------cEEEEEeCCCcEEEEEc
Q 004270          555 GHTDRITDFCFSEDG------KWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg------~~l~s~s~dg~i~iwd~  586 (764)
                      .|...|-+|+|-++.      .+|++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            256679999997643      27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.55  E-value=1.3  Score=48.65  Aligned_cols=229  Identities=10%  Similarity=0.075  Sum_probs=112.0

Q ss_pred             CCEEEEEecCC------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEeCCC
Q 004270          103 GEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST  170 (764)
Q Consensus       103 g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd~~~  170 (764)
                      +..++.|+.++      .+..+|..+++-..  ...+  ........+..-.+  ...++|+.+      .++..||..+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~--~a~m--~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSS--LAPM--PSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEee--cCCC--CcccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence            44455555553      47778877764311  1111  22222223333333  466778887      3567788776


Q ss_pred             CeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcCCe-----EEEEEccCCceEEEEeccCCCCEEEEEE-eeCCCCEEEE
Q 004270          171 KKKLY--EFKGWGSSISSCVSSPALDVVAVGCSDGK-----IHVHNVRYDEELVTFTHSMRGAVTALAF-SSDGQPLLAS  242 (764)
Q Consensus       171 ~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~l~f-s~d~~~~l~s  242 (764)
                      .+=..  .+.......  -.-.-+|.+-|+|+.||.     |-.||..+.+--..-...  ......+. .-+|. +.++
T Consensus       359 ~~W~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~~r~~~gv~~~~g~-iYi~  433 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--TRRSGHGVAVLGGK-LYII  433 (571)
T ss_pred             CceeccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC--cceeeeEEEEECCE-EEEE
Confidence            65211  111111111  112235778889988854     677777765432222111  11122221 22566 7778


Q ss_pred             EeCC------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc-----EEEEEecCCCCCceeeEecc
Q 004270          243 GASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRS  311 (764)
Q Consensus       243 g~~d------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~  311 (764)
                      |+.+      .++..||..+++-...-.-.-...-..++. -++.+.+.||.|+.     |..+|.  ....+..+....
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~  510 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMT  510 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCc
Confidence            8754      357788887774332221001111112333 25667788887763     445544  344445553333


Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCC-----cEEEEEeeccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQDQ  347 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~~~  347 (764)
                      .....+-....  ++...+.|+.||     ++..||..+++
T Consensus       511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            33332222222  677778888776     35556554443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.53  E-value=3.2  Score=42.13  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             CCeeEEEEcC-------CCcEEEEEeCCCcEEEEEcCccceEEE-Ee----eCCceEEEEEcCCCCeEEEEEeCCCeEE
Q 004270          558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDA-IH----VDVSITALSLSPNMDVLATAHVDQNGVY  624 (764)
Q Consensus       558 ~~i~~l~~s~-------dg~~l~s~s~dg~i~iwd~~~~~~~~~-~~----~~~~v~~l~~sp~g~~lat~~~d~~~i~  624 (764)
                      ..++.+.|-.       .|.++++.-..+.|....+..+..+.. -.    ....+..+++.|||.+.++...++. |+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~-iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK-IY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT-EE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe-Ee
Confidence            4567777753       456777666667888888775533322 11    1225999999999999999887774 53

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.41  Score=48.04  Aligned_cols=169  Identities=15%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             CCeEEEEEcCCCCC------eEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270          170 TKKKLYEFKGWGSS------ISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       170 ~~~~~~~~~~h~~~------i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~  241 (764)
                      +|..-+.+-.|...      -+.+-|....+ .+.+...|.+.=|-.+  .......+.....++|.++.|++|.+ .+|
T Consensus         5 sGalyhelihhPslfcnipesngvFfDDaNk-qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilA   82 (657)
T KOG2377|consen    5 SGALYHELIHHPSLFCNIPESNGVFFDDANK-QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILA   82 (657)
T ss_pred             CcceEEEEecCchhhccCCcccceeeccCcc-eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEE
Confidence            45555555544322      22333333333 3333344555555544  34455566666678999999999999 999


Q ss_pred             EEeCCCcEEEEECCCceeeeeeec---ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          242 SGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      +--.+.+|.+++....+.......   .....|.+..|+.+. -++..+.. -+.+|......   +.++..+.|...|+
T Consensus        83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pek---rslRlVks~~~nvn  157 (657)
T KOG2377|consen   83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEK---RSLRLVKSHNLNVN  157 (657)
T ss_pred             EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhh---hhhhhhhhcccCcc
Confidence            999999999999744332222211   234468899998764 45555443 37778766554   44555678889999


Q ss_pred             eEEEecCCCEEEEEe--CCCcEEEEEeec
Q 004270          319 CIRFYANGRHILSAG--QDRAFRLFSVIQ  345 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~--~dg~i~i~d~~~  345 (764)
                      -..|.++.+.++-++  ..+++.-+-+.+
T Consensus       158 Wy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  158 WYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEEEccccceEeeeccccccccccEEEee
Confidence            999999887665443  344444444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=1.2  Score=47.91  Aligned_cols=197  Identities=14%  Similarity=0.178  Sum_probs=107.5

Q ss_pred             eEEEEec-CceEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCE
Q 004270           76 HIAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK  153 (764)
Q Consensus        76 ~i~vw~~-~~~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  153 (764)
                      .|+||+. |..+.++.-..+++..+.| +..-|+....+|+++|+++-........+. .+.....+..|.+..+|    
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg-~e~~~~~I~ec~~f~~G----  139 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVG-FESQMSDIVECRFFHNG----  139 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccc-cccccCceeEEEEecCc----
Confidence            3888886 5555553333347888888 467899999999999999866544211010 11222334555555566    


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEcCCCC---EE-EEEEcCCeEEEEEccCC-ceEEEEeccCCC
Q 004270          154 VIVGSQEGSLQLWNISTKKKLYEFKG---WGSSISSCVSSPALD---VV-AVGCSDGKIHVHNVRYD-EELVTFTHSMRG  225 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~sp~~~---~l-a~g~~dg~i~iwd~~~~-~~~~~~~~~~~~  225 (764)
                      +++-..+|.+.+-+-.....+++++.   ..-+-+|-+.-+++.   .+ .+.-..+ ..+....++ .....+... .+
T Consensus       140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~-~~  217 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP-NS  217 (829)
T ss_pred             eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC-Cc
Confidence            66666677776665333323344332   111212332222221   11 1111111 112222221 122223222 36


Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE  280 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~  280 (764)
                      .+..++.||+.+ +|+--...|.|.+-+.+..+....+......+...++|.-+.
T Consensus       218 ~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  218 SVVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             eEEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            788999999998 888888999999998887776666553333333456665443

>PRK13684 Ycf48-like protein; Provisional

Probab=95.44  E-value=3.5  Score=41.92  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=85.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+..+.+.+++.++++| ..|.+..-.-..++.-....       ..-...++++.+.++++.++.+ ..|.+++=..+
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            567888899988776655 44544432111222111111       1344678899999998876654 55776543344


Q ss_pred             CCCeeeeEec-----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEEe
Q 004270          505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .+..-.....     ...+..+.+.+++..++++ .+|.+. .....++.-....   +-....+.+.|..+++.++ .+
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G  320 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG  320 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence            4433222221     1457788899887766655 456554 3444444333332   2224577888887777666 45


Q ss_pred             CCCcEEEEE
Q 004270          577 MDGSLRIWD  585 (764)
Q Consensus       577 ~dg~i~iwd  585 (764)
                      ..|.|.-|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            678887775

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.40  E-value=0.014  Score=62.83  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=94.7

Q ss_pred             ccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECC--CCCeeeeEec------CcceEEEEEee---cCCEEEEEeCCCe
Q 004270          471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLV  538 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~d~~  538 (764)
                      ++..+.|-.+.|.... ..+.  -.-|.+.||++.  .|+....+..      ...+..+.|.|   +..++..+..++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            3667777777774321 1111  223678889876  4444333322      13344444444   6678888888999


Q ss_pred             EEEEEccCCeEEEEeecCCCCeeEEE-----------EcCCCcEEEEEeCCCcEEEEEcC-cc----ceEEEEeeCCc--
Q 004270          539 IRLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS--  600 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~~h~~~i~~l~-----------~s~dg~~l~s~s~dg~i~iwd~~-~~----~~~~~~~~~~~--  600 (764)
                      +++....+... ..+.+|..++++++           .||||..++.+..||.++.|.+. +|    +++...+.|..  
T Consensus       207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p  285 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP  285 (1283)
T ss_pred             eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence            99887765433 44566887777655           48999999999999999999764 22    33344444432  


Q ss_pred             -eEEEEEcCC---------CCeEEEEEeCCCeEEEEec
Q 004270          601 -ITALSLSPN---------MDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       601 -v~~l~~sp~---------g~~lat~~~d~~~i~lW~~  628 (764)
                       |..+ ++.+         -.++++++.-+..+++|.-
T Consensus       286 ~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  286 RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             ceeee-eccccccCCccceeEEEEecccCCcceeEeec
Confidence             3333 3322         1356666665557999975

>PRK10115 protease 2; Provisional

Probab=95.39  E-value=6.3  Score=44.56  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEE
Q 004270          182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI  251 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~i  251 (764)
                      -.+..+.+||++++|+.+...     ..|++.|+.+|+.+......  .. ..++|++|++.++++...+     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346678899999999876432     45889999888644332222  12 5699999998555554422     46888


Q ss_pred             EECCCc--eeeeeeecccccCee-EEEEecCCCEEEEEcC---CCcEEEEEecCC
Q 004270          252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDTT  300 (764)
Q Consensus       252 wd~~~~--~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~---d~~i~vw~~~~~  300 (764)
                      +++.++  +....+. ....... ....+.++++++..+.   ++.+.+++.+..
T Consensus       204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~  257 (686)
T PRK10115        204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELA  257 (686)
T ss_pred             EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCC
Confidence            898887  3333333 2222233 3333447776554433   356777765443

>PHA03098 kelch-like protein; Provisional

Probab=95.26  E-value=0.95  Score=49.84  Aligned_cols=189  Identities=11%  Similarity=0.064  Sum_probs=85.2

Q ss_pred             EEeCCEEEEEecCC------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeC
Q 004270          100 LLFGEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNI  168 (764)
Q Consensus       100 ~~~g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~  168 (764)
                      ..++..++.|+.++      .+..||..+.+...  +..+.....  ...+..-++  ...+.|+.+     ..+..||.
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~R~--~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~  365 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK--VPELIYPRK--NPGVTVFNN--RIYVIGGIYNSISLNTVESWKP  365 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE--CCCCCcccc--cceEEEECC--EEEEEeCCCCCEecceEEEEcC
Confidence            34555555555432      46677776655421  111111111  112222344  455666654     34777887


Q ss_pred             CCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270          169 STKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       169 ~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l  240 (764)
                      .+.+-..  .+....... ++ ..-++++.+.|+.+      ..+..||..+++-...-.......-.+ +..-++. +.
T Consensus       366 ~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~-iy  441 (534)
T PHA03098        366 GESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGK-IY  441 (534)
T ss_pred             CCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCE-EE
Confidence            6653221  111111111 11 22356667777632      458889987664322111110111112 2233555 67


Q ss_pred             EEEeCC--------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecC
Q 004270          241 ASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDT  299 (764)
Q Consensus       241 ~sg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~  299 (764)
                      +.|+.+        ..+.+||..+++-...-.......-.+++. -++..++.||.+     +.+.+||.++
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            777643        238889988765332211011111112222 266677777654     3455565443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.24  E-value=0.6  Score=50.57  Aligned_cols=116  Identities=14%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEEe-----c
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWIF-----D  298 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~~-----~  298 (764)
                      .++-+.-+.-++ ..++.+....+.|||.+.+...........+.|.++.|.  |+++.+++.|..+.|.++.-     .
T Consensus        31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            444455555555 445555566899999998876555443457899999995  68889999999999998842     1


Q ss_pred             CCCCCceeeEe--ccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          299 TTDGDPRLLRF--RSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       299 ~~~~~~~~~~~--~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      .....+..++.  ...|+ .+|....|.++|..++.+|  +.+.++|-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            11222222222  23344 6899999999996555543  347777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=0.24  Score=55.55  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=111.3

Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC--------ccccccc-cccCcEEEEEECCCCCEEEE--EeCCC
Q 004270          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD--------MSERSNY-AHNGEVVGVACDSTNTLMIS--AGYHG  496 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~--------~~~~~~~-~h~~~v~~l~~~~~~~~l~s--~~~dg  496 (764)
                      ..++.++.-..++++...+.+.++-..+-.....-.+        ....... ...-.+..+.+.+|+...+.  .+.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            3456666666666777777666665433211111100        0000111 12335666677777654443  33445


Q ss_pred             eEEEEECCCCCeee--------eE----ecCcceEEEEEeecC-CEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeE
Q 004270          497 DIKVWDFKGRDLKS--------RW----EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD  562 (764)
Q Consensus       497 ~v~iwd~~~~~~~~--------~~----~~~~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~  562 (764)
                      .|..||+.+-..-.        ..    ....-..++.|.|.- ...|+...|+.|+|..+..... +..+. -....++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta  203 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA  203 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence            78999987542211        11    111334566777643 2456667888888887654332 22222 4567899


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-----CCceEEEEEcCCCCeEEEEE
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~lat~~  617 (764)
                      ++|+|.|+.++.|-..|++.-|.. +++....+..     ...|.+|+|-....||++=+
T Consensus       204 v~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            999999999999999999998873 3554444432     23499999999888887643

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=2.3  Score=38.30  Aligned_cols=174  Identities=15%  Similarity=0.098  Sum_probs=101.3

Q ss_pred             eCCEEEEEecCC--cEEEEEccCCcccccceeeEecCC--ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270          102 FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF  177 (764)
Q Consensus       102 ~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  177 (764)
                      +|..+.+.+.-|  .|++||+.+++.    +.+.+...  -+.-...-.-+.   .....-.+|.-..+|.++.+++..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEGit~~gd~---~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEGITKLGDY---FYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccceeeccce---EEEEEeccceeEEEChHHhhhhccc
Confidence            465666666544  499999998887    33333221  111111111121   2233447788899999999888777


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe----ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd  253 (764)
                      .-. +.=+.+  ..|++.|..+.....++.-|.++-....+..    +..-..+..+.|- ||. +.|---.+..|...+
T Consensus       128 ~y~-GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~  202 (262)
T COG3823         128 SYE-GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARID  202 (262)
T ss_pred             ccC-Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEc
Confidence            542 222333  3456667777766778888877655444333    2112234445554 455 555555566677777


Q ss_pred             CCCceeeeeee-----------cccccCeeEEEEecCCCEEEEEc
Q 004270          254 LEKRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       254 ~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      .++|+.+..+.           ..|.+-.+.+++.|++..++..+
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            77777766554           23455678899999875444433

>PHA03098 kelch-like protein; Provisional

Probab=94.68  E-value=2.3  Score=46.78  Aligned_cols=186  Identities=11%  Similarity=0.058  Sum_probs=89.5

Q ss_pred             EEecCCeEEEEEEeC------CeEEEEecCCCeEEEecCCC-CcceEEEEEeCCeEEEEECCe-------EEEEecCceE
Q 004270           21 VQRLGTENFVTVSVG------KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGNH-------IAVVKRAHQV   86 (764)
Q Consensus        21 ~~~~~~~~~~~~~~~------~~i~iwd~~~~~~~~~~~~~-~~~I~~~~~~~~~~~~a~g~~-------i~vw~~~~~~   86 (764)
                      ....++..++.++.+      +.+..||..+.+-....+.. +..-.+++...+..|+..|..       +..||.....
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            334566777777653      25788998887765443211 222234445566677666532       7777754321


Q ss_pred             EE----ecccccceEEEEEeCCEEEEEecC------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEE
Q 004270           87 AT----WSRHSAKVNLLLLFGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV  156 (764)
Q Consensus        87 ~~----~~~h~~~v~~l~~~g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~  156 (764)
                      -+    +............++...+.|+.+      +.+..||..+.+-..  +..+.  ......++...++  ...+.
T Consensus       370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p--~~r~~~~~~~~~~--~iyv~  443 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK--GSPLP--ISHYGGCAIYHDG--KIYVI  443 (534)
T ss_pred             eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee--cCCCC--ccccCceEEEECC--EEEEE
Confidence            11    111111112233456666666632      357888887655421  11111  1111122333344  34455


Q ss_pred             EeCC--------CcEEEEeCCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCc
Q 004270          157 GSQE--------GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE  214 (764)
Q Consensus       157 ~~~d--------g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~  214 (764)
                      |+.+        ..+.+||..+.+-..  .+.........+.+  ++.+.+.|+.+     +.+.+||..+++
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            5432        237888887654221  11111111122222  56666677654     457777766553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.63  E-value=5.1  Score=39.59  Aligned_cols=159  Identities=16%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             EEEEEECCCCCEEEE--EeC----------CCeEEEEECCCCCeeeeEecC-------cceEEEEEeecC-----CEEEE
Q 004270          477 VVGVACDSTNTLMIS--AGY----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLAT  532 (764)
Q Consensus       477 v~~l~~~~~~~~l~s--~~~----------dg~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la~  532 (764)
                      |..+..++++++-+.  |..          .-.|.+||+++++.++++..+       +.+..+.+....     .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            556666666654442  110          126888999999998888754       455667776632     24433


Q ss_pred             Ee-CCCeEEEEEccCCeEEEEeecCC-------------------CCeeEEEEcC---CCcEEEEEeCCCcEEEEEcCcc
Q 004270          533 VA-DDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       533 ~~-~d~~i~v~d~~~~~~~~~~~~h~-------------------~~i~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                      +. ..+.|.|+|+.+++..+.+..+.                   ..+..++.+|   ||++|.-....+ -++|.+++.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            33 34689999999988766654321                   2366677765   777887766544 355555431


Q ss_pred             --------------ceEEEEee-CCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCCCC
Q 004270          590 --------------RQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN  637 (764)
Q Consensus       590 --------------~~~~~~~~-~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~~~  637 (764)
                                    +.+..+.. ......++++++|....+--... +|..|+.+..|.+...
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~  223 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF  223 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred             HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence                          12222222 23477899999888777776666 7999999988876554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.50  E-value=8.9  Score=41.81  Aligned_cols=397  Identities=11%  Similarity=0.101  Sum_probs=168.9

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC--------CeEE-EEEcCCCCCeEEEEEcC-----CCCEEEEE--EcCC
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKL-YEFKGWGSSISSCVSSP-----ALDVVAVG--CSDG  203 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~--------~~~~-~~~~~h~~~i~~~~~sp-----~~~~la~g--~~dg  203 (764)
                      ...++..|.+  +.++++..+|.+.++-++.        ...+ ..+ .....|..++|-.     +...+|+-  ...+
T Consensus        46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~  122 (504)
T PF10433_consen   46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR  122 (504)
T ss_dssp             --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred             CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence            4567899999  8999999999999998877        1111 111 1256778888875     22344432  2222


Q ss_pred             --eEEEEEccCCceEEE----------EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---eeeeeeec---
Q 004270          204 --KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIRE---  265 (764)
Q Consensus       204 --~i~iwd~~~~~~~~~----------~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~---  265 (764)
                        .+..++......+..          +......+..-+....... .++.++ ++.+.+-+....   .....+..   
T Consensus       123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~-~~~i~y~~~~~~~~~~~~~~~~~~~~  200 (504)
T PF10433_consen  123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGG-ENIIIYKNHLIGSGDYSFLSIPSPPS  200 (504)
T ss_dssp             EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEE-SSEEEEEE------TTEEEEE--H-H
T ss_pred             cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEEC-CEEEEEecccccccccccccccCCcc
Confidence              234443222211111          1111112222222222122 333443 233333322111   11111110   


Q ss_pred             ccccCeeEEEE-------ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-CCCCeeEEEecCC-CEEEEEeCCC
Q 004270          266 AHDNAIISLHF-------FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDR  336 (764)
Q Consensus       266 ~h~~~v~~l~~-------~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~~~dg  336 (764)
                      ....-+.+...       ..++..++.+..+|.+....+.....  .+....-+. .....++.+..+| .+++.|+.-|
T Consensus       201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g  278 (504)
T PF10433_consen  201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG  278 (504)
T ss_dssp             HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred             CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC
Confidence            01222333332       34566888889999998887765432  111222223 4555677776554 3777777655


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc------ceeEeee--CCceEEEEEcc
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHM--DTAQAYVWRLQ  408 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~w~~~  408 (764)
                      .=.++.+....                +.....-....|+..+...........      .++++..  ..+.+++..-.
T Consensus       279 ds~l~~~~~~~----------------l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G  342 (504)
T PF10433_consen  279 DSQLLQISLSN----------------LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG  342 (504)
T ss_dssp             -EEEEEEESES----------------EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred             CcEEEEEeCCC----------------cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence            54444443111                111122234667877777654433333      6666654  34566555432


Q ss_pred             ceeec-ceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECc---CCcccceecCccccccccccCcEEEEEEC
Q 004270          409 NFVLG-EHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       409 ~~~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                      -...+ .......++ ...+..+.... ++.++++...+. -.++.+.   .......... .  ........+.+-.+.
T Consensus       343 i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~~~  417 (504)
T PF10433_consen  343 IGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGNVG  417 (504)
T ss_dssp             BEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEEET
T ss_pred             CCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEEcC
Confidence            11110 000000000 12222222221 246777766654 3344443   2222111100 0  000111122222222


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-c----CCC
Q 004270          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G----HTD  558 (764)
Q Consensus       484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~----h~~  558 (764)
                        +..++=... ..|++.+...++....+.......-++.+-++.+++++..++.+..+.+.......... .    ...
T Consensus       418 --~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 --DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             --TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             --CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence              333433333 45888888888877777665333333334446788888889999999998776643332 1    457


Q ss_pred             CeeEEEEcC
Q 004270          559 RITDFCFSE  567 (764)
Q Consensus       559 ~i~~l~~s~  567 (764)
                      .|.++..+|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788887766

...

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=94.48  E-value=12  Score=43.20  Aligned_cols=147  Identities=17%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CEEEEEec---------CCcEEEEECcC-----CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       437 ~~l~~g~~---------~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      .++++|+.         .|.+++||+-.     |++...... ........++.|..++= -+|. |+++. ...|.+|+
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~Kl-Kel~~eE~KGtVsavce-V~G~-l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKL-KELYIEEQKGTVSAVCE-VRGH-LLSSQ-GQKIIVRK 1122 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccccee-eeeehhhcccceEEEEE-eccE-EEEcc-CcEEEEEE
Confidence            47788754         58999999733     222111110 00011245667766653 2454 44433 35899999


Q ss_pred             CC-CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-EEEeec--CCCCeeEEEEcCCCc--EEEEEe
Q 004270          503 FK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGK--WLLSSG  576 (764)
Q Consensus       503 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-~~~~~~--h~~~i~~l~~s~dg~--~l~s~s  576 (764)
                      ++ ...++..--..-++.-.....-.+++..|.--..|.+.-.+..-. +.-+..  ..-.+.++.|--||.  +++++.
T Consensus      1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred             eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence            94 443332221222333333333356777776666666655443221 222211  123477888877775  567788


Q ss_pred             CCCcEEEEEcC
Q 004270          577 MDGSLRIWDVI  587 (764)
Q Consensus       577 ~dg~i~iwd~~  587 (764)
                      .|++|+++-..
T Consensus      1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred             CCCcEEEEEeC
Confidence            99999988543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=7  Score=45.49  Aligned_cols=162  Identities=15%  Similarity=0.277  Sum_probs=90.2

Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE--------cCCCCEEEEEEcCCeEEEEEccCCceE---------EEEec
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVS--------SPALDVVAVGCSDGKIHVHNVRYDEEL---------VTFTH  221 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~--------sp~~~~la~g~~dg~i~iwd~~~~~~~---------~~~~~  221 (764)
                      .|+.+.+||++++.....+.+....|..+..        -|.-+++++-+.--.|.++-+..++..         .++..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            5678999999998888888887777777643        344445554444456777755422211         11112


Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      . ...|.++....+|+ ++.+ +.||  .+|.+.     .....+-.+.       ...+.-.+.+.-..+.        
T Consensus       177 d-g~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~-----Yq~~~gWf~~-------rc~Kiclt~s~ls~lv--------  231 (1311)
T KOG1900|consen  177 D-GVSVNCITYTENGR-IFFA-GRDG--NLYELV-----YQAEDGWFGS-------RCRKICLTKSVLSSLV--------  231 (1311)
T ss_pred             C-CceEEEEEeccCCc-EEEe-ecCC--CEEEEE-----EeccCchhhc-------ccccccCchhHHHHhh--------
Confidence            1 45688888777887 5554 4556  444431     0000000000       0000111111000000        


Q ss_pred             CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                        +.++.....+..+|..+.....-..+.+-+..|++++|++....
T Consensus       232 --Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  232 --PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             --hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence              01111113677899999998877888899999999999998743

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.22  E-value=8  Score=40.14  Aligned_cols=150  Identities=11%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceE-EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---  258 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---  258 (764)
                      ....+..++++.+++++..-..++-||  .|... ..........++++.|.+++. +++++ ..|.+. +....++   
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCccc
Confidence            345567788888888776533233343  33322 233333356799999999998 55544 556654 3334443   


Q ss_pred             --eeeeeecc-cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270          259 --LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       259 --~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (764)
                        ........ -...+.++.|.+++..+++ +..|.+...  ......+........-....+.+.|.++++-++ .+.+
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~  390 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGND  390 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCC
Confidence              12222211 1235889999988765554 556766654  222222233222233456778888877665444 4567


Q ss_pred             CcEEEE
Q 004270          336 RAFRLF  341 (764)
Q Consensus       336 g~i~i~  341 (764)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            766544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.22  E-value=6.3  Score=38.98  Aligned_cols=145  Identities=10%  Similarity=0.056  Sum_probs=77.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-ccCCeE
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM  549 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d-~~~~~~  549 (764)
                      .-.+.+..+..+++|++++++..-..+.-||--.. =..+.......|..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            44577888999999998888876555667764322 122233345889999999998877655 888888877 222222


Q ss_pred             EEE----eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee----CCceEEEEEcCCCCeEEEEEeCC
Q 004270          550 VRK----FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       550 ~~~----~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      ...    +....-.+.+++|.+++...++|+ .|++ +.....|+-=..-+.    +.....+.|.++.+-+|.+ .++
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G  296 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDG  296 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence            211    111223478999999988777665 4533 344555654444432    3458889998765555554 455

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.10  E-value=2.3  Score=45.67  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~  551 (764)
                      .|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+.   -.+-+.|-|-+..++.-+.|....-|+++-.+.+.
T Consensus       335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln---fcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt  411 (1636)
T KOG3616|consen  335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN---FCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT  411 (1636)
T ss_pred             cccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH---HhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence            788998888888877777776666778888888654322221   23446788877777666655444444555544444


Q ss_pred             Ee
Q 004270          552 KF  553 (764)
Q Consensus       552 ~~  553 (764)
                      .+
T Consensus       412 ~~  413 (1636)
T KOG3616|consen  412 MF  413 (1636)
T ss_pred             ee
Confidence            43

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.08  E-value=6.1  Score=38.24  Aligned_cols=242  Identities=12%  Similarity=0.133  Sum_probs=125.3

Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECC------Cc-eeeeeeec--c--cccCeeEEEEecCCC------------E
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLE------KR-RLQSVIRE--A--HDNAIISLHFFANEP------------V  282 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~------~~-~~~~~~~~--~--h~~~v~~l~~~~~~~------------~  282 (764)
                      .-..|+|+|.+. +-++....+...+||..      .. .++..+..  +  .....+.+.|+....            .
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            346799999887 66776777899999986      12 22333331  1  234677777764322            3


Q ss_pred             EEEEcCCCcEEEEEecCCCCC--ceeeEeccCCCCCC-eeEEEec--CCCEEEEE-eCCCcEEEEEeecccccccccchh
Q 004270          283 LMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPP-LCIRFYA--NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRH  356 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v-~~i~~~~--~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~  356 (764)
                      ++.+++||+|.-|.-......  ...+..-.+....| ..+++..  .+.+|..+ -..++|.+||-.-.....  . +.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~-g~  179 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--P-GS  179 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--C-CC
Confidence            677889999999964322110  01111111112222 3344443  24455444 356778887643221100  0 00


Q ss_pred             hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (764)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  436 (764)
                               +...  .+|.  .++.        -++...   .+.                       -.|+-..-.+++
T Consensus       180 ---------F~DP--~iPa--gyAP--------FnIqni---g~~-----------------------lyVtYA~qd~~~  212 (336)
T TIGR03118       180 ---------FIDP--ALPA--GYAP--------FNVQNL---GGT-----------------------LYVTYAQQDADR  212 (336)
T ss_pred             ---------ccCC--CCCC--CCCC--------cceEEE---CCe-----------------------EEEEEEecCCcc
Confidence                     0000  0000  0000        000000   000                       112222223334


Q ss_pred             CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC------CCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      +.=+.|...|.|.+||+... .++.+..      .+.-..-.+|+..|      .+.+|+---.||+|..+|..+++.+.
T Consensus       213 ~d~v~G~G~G~VdvFd~~G~-l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       213 NDEVAGAGLGYVNVFTLNGQ-LLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             cccccCCCcceEEEEcCCCc-EEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence            44455566678888887643 3333321      24445667788765      45777766689999999999998777


Q ss_pred             eEecC-------cceEEEEEee
Q 004270          511 RWEVG-------CSLVKIVYHR  525 (764)
Q Consensus       511 ~~~~~-------~~i~~~~~s~  525 (764)
                      .+...       ..++.++|..
T Consensus       286 ~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       286 QLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eecCCCCCeEEecCeEEeeeCC
Confidence            76543       4456677655

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=4.6  Score=43.89  Aligned_cols=216  Identities=12%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             CcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE--CCeEEEEecCceEEEe-----
Q 004270           17 VPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVATW-----   89 (764)
Q Consensus        17 v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~--g~~i~vw~~~~~~~~~-----   89 (764)
                      -|.++.+.+.+..=.++.-..|+||+....-+-...-.|. ++-.|-|+.+..++..  .+.+.||+.-.+....     
T Consensus        45 GpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~  123 (829)
T KOG2280|consen   45 GPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGF  123 (829)
T ss_pred             CceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhccccccc
Confidence            3444444333333223444568888866544433333333 7888999999666654  4559999864433322     


Q ss_pred             cccccceEEEEEeCCEEEEEecCCcEEEEEc-cCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE-e-CCCcEEEE
Q 004270           90 SRHSAKVNLLLLFGEHILSIDIDGNMFIWAF-KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-S-QEGSLQLW  166 (764)
Q Consensus        90 ~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-~-~dg~i~iw  166 (764)
                      ......|....+.++-++.-..+|.+.+-+- +......  ...+++..-...+..+.++.+...++.. . ..+ ..+.
T Consensus       124 e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~  200 (829)
T KOG2280|consen  124 ESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC  200 (829)
T ss_pred             ccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence            1223345555555566666666776554332 2211111  1111111111111122222221111111 1 111 1112


Q ss_pred             eCCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC
Q 004270          167 NISTK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (764)
Q Consensus       167 d~~~~-~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (764)
                      -..++ ...+.+..-.+.+..+..||+.++||--..+|.|.+-+.+..+....+......+...++|..+.
T Consensus       201 q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  201 QVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            11111 12223333246788999999999999999999999999998888888875444455567776554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.04  E-value=8.7  Score=39.94  Aligned_cols=259  Identities=14%  Similarity=0.141  Sum_probs=139.1

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCe-----EEEecCCCCcceEEEEEeC-----CeEEEE--ECCeEEEEec----Cc----
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLN-----LVLVGPQLPKKIRALASYR-----DYTFAA--YGNHIAVVKR----AH----   84 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~I~~~~~~~-----~~~~~a--~g~~i~vw~~----~~----   84 (764)
                      +.+.++++|..|.++||+.....     ++.. .....+|-.|+.-+     +...+|  .-..+.||..    +.    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            56799999999999999997643     3333 35678898887532     222222  2444777753    11    


Q ss_pred             ---eEEEecccccceEEEE----Ee-----CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCC
Q 004270           85 ---QVATWSRHSAKVNLLL----LF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLN  152 (764)
Q Consensus        85 ---~~~~~~~h~~~v~~l~----~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  152 (764)
                         .+.....|.-.-++..    ++     -++++.-+.||.+.+++-+....    ...++. --....+++.+..  +
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~-~llPgPl~Y~~~t--D  187 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPD-FLLPGPLCYCPRT--D  187 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCC-CCCCcCeEEeecC--C
Confidence               1222334433333222    12     36788899999999999776543    111111 1122234566666  6


Q ss_pred             EEEEEeCCCcEEEEeCCC--------------------Ce---EEEEEcCCCCCeEEE---EEcCCCCEEEEEEcCCeEE
Q 004270          153 KVIVGSQEGSLQLWNIST--------------------KK---KLYEFKGWGSSISSC---VSSPALDVVAVGCSDGKIH  206 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~--------------------~~---~~~~~~~h~~~i~~~---~~sp~~~~la~g~~dg~i~  206 (764)
                      .+++++.+..+.-|....                    ++   .-+++.- +..+..+   .++.....+++-+. .++.
T Consensus       188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf  265 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLF  265 (418)
T ss_pred             EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEE
Confidence            788888888888886421                    11   1122222 2333333   33323333443333 4566


Q ss_pred             EEEccCCceEEEEeccCCCCEEEEEEee------CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE---Ee
Q 004270          207 VHNVRYDEELVTFTHSMRGAVTALAFSS------DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH---FF  277 (764)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~------d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~---~~  277 (764)
                      ..+. +|......+.. -.+...+.|..      +....++.++.++++.||.  ..+++......| .+| ++.   |.
T Consensus       266 ~l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~-~PV-al~v~~~~  339 (418)
T PF14727_consen  266 CLKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPH-VPV-ALSVANFN  339 (418)
T ss_pred             EEcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCC-CCE-EEEecccC
Confidence            6664 45444444332 22233333332      2222578888999999996  334444443112 222 332   22


Q ss_pred             cCCCEEEEEcCCCcEEEEEecC
Q 004270          278 ANEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      .-...+++-+.+|.+.+--+-+
T Consensus       340 ~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  340 GLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CCCceEEEEcCCCcEEEEEeCC
Confidence            2334788888888888764433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.83  E-value=3.8  Score=45.16  Aligned_cols=102  Identities=11%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             EEEEEeCCCcEEEEECCCc--------------------eeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEE
Q 004270          239 LLASGASSGVISIWNLEKR--------------------RLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~--------------------~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~  296 (764)
                      +|+.+..||.|.+|.+++-                    ++...+  .-...+++++++  ...+++|.++....|.||-
T Consensus       116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            8889999999999975211                    011122  234578999998  7788999999889999998


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCC---C---EEEEEeCCCcEEEEEe
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSV  343 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~---~---~l~s~~~dg~i~i~d~  343 (764)
                      +........... -..|...|.+|+|.++.   .   .+++++-.|.+.+|++
T Consensus       194 f~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             Eecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            876422211111 22477789999998733   2   7778899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.71  E-value=7.1  Score=37.79  Aligned_cols=236  Identities=12%  Similarity=0.126  Sum_probs=128.3

Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEEecCCC--CCc-eeeEeccC-----CCCCCeeEEEecCCCE------------E
Q 004270          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGRH------------I  329 (764)
Q Consensus       270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~~------------l  329 (764)
                      .-+.++++|.+.+-++....+...+||.+...  +.+ .++.....     ....++.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888888888899999876221  111 22222221     2346788888753333            5


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      +.+++||+|.-|...-+.....                                                ..+.+.|-. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~------------------------------------------------~~~~~~d~s-  134 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT------------------------------------------------RAEIVVDAS-  134 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc------------------------------------------------ccEEEEccC-
Confidence            6677888888887432211000                                                000000000 


Q ss_pred             eeecceeecCCCCCCCCeEEEEEcc--CCCEEEEE-ecCCcEEEEECcCCccc--ceecCccccc--------cccccCc
Q 004270          410 FVLGEHILRPCPENPTAVKACTISA--CGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERS--------NYAHNGE  476 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g-~~~g~i~i~~~~~~~~~--~~~~~~~~~~--------~~~h~~~  476 (764)
                                  .....-+.+++..  .+++|..+ ..+++|.+||-.-....  ..+.++....        ..+..-.
T Consensus       135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly  202 (336)
T TIGR03118       135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY  202 (336)
T ss_pred             ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence                        0012223344433  34555444 45788999876533221  1122111000        0000111


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEee------cCCEEEEEeCCCeEEEEEccCC
Q 004270          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      |+-..-+++.+.=+.+..-|.|-+||.. +++++++...   ...+.|+..|      .+.+|+--..||+|..||..++
T Consensus       203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence            2222223333223334445789999965 6677777555   4556677755      4667777788999999999999


Q ss_pred             eEEEEeecCCC------CeeEEEEcC
Q 004270          548 RMVRKFEGHTD------RITDFCFSE  567 (764)
Q Consensus       548 ~~~~~~~~h~~------~i~~l~~s~  567 (764)
                      +.+..+....+      ....|+|-.
T Consensus       282 ~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       282 AQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ceeeeecCCCCCeEEecCeEEeeeCC
Confidence            98888876443      356677754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.70  E-value=9.1  Score=38.97  Aligned_cols=199  Identities=14%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             EEEEeCCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC----CCCE--EEEEEc-C---CeEEEEEc
Q 004270          142 TCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP----ALDV--VAVGCS-D---GKIHVHNV  210 (764)
Q Consensus       142 ~~~~~p~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp----~~~~--la~g~~-d---g~i~iwd~  210 (764)
                      .+..+|...- .+|+....++-+.+||+ .|+.++.+..  +.++.+..-.    .|+.  ||+++. +   .+|++|.+
T Consensus        58 AIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i  134 (381)
T PF02333_consen   58 AIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI  134 (381)
T ss_dssp             EEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred             cEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence            3445543322 46777778888999998 6778787752  3455544321    3332  444443 2   47999988


Q ss_pred             cCC-ceEEEEecc------CCCCEEEEEEe--e-CCCCEEEEEeCCCcEEEEECC---Cc----eeeeeeecccccCeeE
Q 004270          211 RYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAIIS  273 (764)
Q Consensus       211 ~~~-~~~~~~~~~------~~~~v~~l~fs--~-d~~~~l~sg~~dg~i~iwd~~---~~----~~~~~~~~~h~~~v~~  273 (764)
                      ... ..+..+...      .-..+..+++-  + +|..+++....+|.+.-|.+.   .+    ++++.+.  -.+.+..
T Consensus       135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EG  212 (381)
T PF02333_consen  135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEG  212 (381)
T ss_dssp             ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEE
T ss_pred             cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceE
Confidence            632 233333211      12346677764  3 466567778889988877664   33    3455554  3457888


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEecCCCCC-ceeeEecc--CCCCCCeeEEEec--CC-CEEEEEe-CCCcEEEEEeec
Q 004270          274 LHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHILSAG-QDRAFRLFSVIQ  345 (764)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~~-~~l~s~~-~dg~i~i~d~~~  345 (764)
                      +........|+.+-.+.-|.-|+.+...+. .+.+....  +....+..++...  ++ .+|+..+ .+++..+|+...
T Consensus       213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            888888889999887755544444433322 23333332  3456888888865  33 3455444 577899999753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.54  E-value=4.5  Score=41.01  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCe------EEEEECCC--C--Ce---eeeEe--cC---------cceEEEEEeecCC
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R--DL---KSRWE--VG---------CSLVKIVYHRVNG  528 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~------v~iwd~~~--~--~~---~~~~~--~~---------~~i~~~~~s~~~~  528 (764)
                      .-+.+.+|.+.+++..+++.+.+|.      +..+++..  +  ..   .....  ..         ....++++.+++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3466788999976666777777777      65555543  1  00   11111  11         1345788877788


Q ss_pred             EEEEEeCC------CeEEEEEccCCeEEEEee---------------cCCCCeeEEEEcCCCcEEEEEeC-----CC--c
Q 004270          529 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG--S  580 (764)
Q Consensus       529 ~la~~~~d------~~i~v~d~~~~~~~~~~~---------------~h~~~i~~l~~s~dg~~l~s~s~-----dg--~  580 (764)
                      ++++.-.+      ..|+.++.. |+....+.               .......+|+++|||+.|+++.+     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77777667      788888876 66554441               12345789999999996665543     22  1


Q ss_pred             -------EEEE--EcCc-cceEEEE--eeC--------CceEEEEEcCCCCeEEEEEe----CCCeEEEEecc
Q 004270          581 -------LRIW--DVIL-ARQIDAI--HVD--------VSITALSLSPNMDVLATAHV----DQNGVYLWVNR  629 (764)
Q Consensus       581 -------i~iw--d~~~-~~~~~~~--~~~--------~~v~~l~~sp~g~~lat~~~----d~~~i~lW~~~  629 (764)
                             ++++  |..+ ++....+  +..        ..+..+.+-+++++|+.-=.    .+..++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   4554  5444 3333333  222        34889999999998775332    22345555544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.52  E-value=3.3  Score=37.94  Aligned_cols=103  Identities=13%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             CEEEEEeCCCeEEEEEcc--CCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---C---cEEEE---EcC--ccce---
Q 004270          528 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---G---SLRIW---DVI--LARQ---  591 (764)
Q Consensus       528 ~~la~~~~d~~i~v~d~~--~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g---~i~iw---d~~--~~~~---  591 (764)
                      +.|.++.....|.+|++.  ..+++.+|..- +.|..+.++..|.||+|-=.+   .   .+|+|   +..  ..++   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455455777889999988  34556667644 789999999999999985322   2   56775   222  1111   


Q ss_pred             ------------------EE--EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270          592 ------------------ID--AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  633 (764)
Q Consensus       592 ------------------~~--~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~  633 (764)
                                        +.  .++...++.+++-.|-.--|+.|+.+  .+.||.++....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~  167 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI  167 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence                              11  12234457888888844445555545  499999876544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.40  E-value=17  Score=41.07  Aligned_cols=93  Identities=11%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~  260 (764)
                      -.|..+.++|+|++||..+..| |.|..+.. ...-..+..+ ...|.|-.+.=+.. ++ .                  
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g-~~~i~Crt~~v~~~-~~-~------------------  142 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDG-KKEINCRTVPVDER-FF-T------------------  142 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCC-CcceeEEEEEechh-hc-c------------------
Confidence            4677888999999999888865 44444431 1111222222 22333333322221 11 1                  


Q ss_pred             eeeecccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCC
Q 004270          261 SVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~  300 (764)
                          ..+...|..+.|+|.   +..|+.-..|+++|+||+...
T Consensus       143 ----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 ----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                123446777788875   467888888888888888644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=2.8  Score=37.80  Aligned_cols=172  Identities=12%  Similarity=0.048  Sum_probs=105.5

Q ss_pred             CCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeee
Q 004270          435 CGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSR  511 (764)
Q Consensus       435 ~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~  511 (764)
                      +|.++.+.+.  ...|++||+.+|+...+....+        ..+.+=-...-+.++ .-.-.+|.-..+|.++.+.+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--------~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~  126 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--------DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR  126 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC--------ccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence            3444444433  3489999999998877654211        111111111112222 2334678888999999888888


Q ss_pred             EecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee----cC-CCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE----GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       512 ~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~----~h-~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +..++.-..++.  |+.-|..+....+++.-|-++.....+..    |. -..++.+.|- ||...|-.=.+..|..-|.
T Consensus       127 ~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         127 FSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP  203 (262)
T ss_pred             cccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence            877766665554  45667777777788888877654443332    21 1334445554 6766666666667777888


Q ss_pred             CccceEEEEeeC-------------CceEEEEEcCCCCeEEEEE
Q 004270          587 ILARQIDAIHVD-------------VSITALSLSPNMDVLATAH  617 (764)
Q Consensus       587 ~~~~~~~~~~~~-------------~~v~~l~~sp~g~~lat~~  617 (764)
                      .+|+.+..+...             ...+.+++.|++..+...+
T Consensus       204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            889888877532             1378899999885554443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.15  E-value=9  Score=40.30  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eE----e--cCcceEEEEEeecC------CEEEEEe------
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RW----E--VGCSLVKIVYHRVN------GLLATVA------  534 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~----~--~~~~i~~~~~s~~~------~~la~~~------  534 (764)
                      ...+.|+|.|++++|++--..|.|++++-.++....  .+    .  .......++++|+-      ++|.+..      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            456889999999888776657999999865543211  11    1  24678899999874      3444432      


Q ss_pred             ----CCCeEEEEEccCC-------e-EEEEee---cCCCCeeEEEEcCCCcEEEEEeCC
Q 004270          535 ----DDLVIRLFDVVAL-------R-MVRKFE---GHTDRITDFCFSEDGKWLLSSGMD  578 (764)
Q Consensus       535 ----~d~~i~v~d~~~~-------~-~~~~~~---~h~~~i~~l~~s~dg~~l~s~s~d  578 (764)
                          ....|.-|.+...       + ++..+.   .|.  -..|+|.|||.+.++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                1234444544311       1 111121   233  3568899999877766543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.04  E-value=2.7  Score=43.24  Aligned_cols=138  Identities=15%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEccC-CceEEEEec---cC
Q 004270          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTH---SM  223 (764)
Q Consensus       155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-------~la~g~~dg~i~iwd~~~-~~~~~~~~~---~~  223 (764)
                      ..|.....++-.|++.|+.+.++..|...  -+.|.|..+       .-++|-++..|.-.|.+- |..+.....   ..
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            34666677888899999999999987765  567777532       234566666666666553 322222111   00


Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      .....+..-...|  ++|+|+..|.|++||--..+....+. +....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus       562 Kn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         562 KNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            1223333333334  79999999999999965444444455 78889999999999998777664 456665554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.94  E-value=0.53  Score=30.24  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCC---CEEEEEEcCCeEEEEEccCC
Q 004270          182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD  213 (764)
Q Consensus       182 ~~i~~~~~sp~~---~~la~g~~dg~i~iwd~~~~  213 (764)
                      ++|.++.|||+.   ++|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.80  E-value=9  Score=36.35  Aligned_cols=235  Identities=12%  Similarity=0.073  Sum_probs=141.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~  260 (764)
                      ...-..++-+|||..-.++...|.|--.|..+|+....-... ...-..+..-|||. .-++-+.. -|.-.|-++.+..
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCcc-eeEEecCcccceE
Confidence            345567888999998888888888888898888765544332 55677888888887 33332222 5555665555332


Q ss_pred             ee-eec-ccccCeeEEEEecCCCEEEEEcCC---------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          261 SV-IRE-AHDNAIISLHFFANEPVLMSASAD---------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       261 ~~-~~~-~h~~~v~~l~~~~~~~~l~s~~~d---------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      .- +.. .-........|.+.|++-+++...         +.|++|..              ........|+..|||..-
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence            21 111 224567788899999887777531         23344422              233456778888998877


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++.-.+..|...|..... ..                                                           
T Consensus       204 yaslagnaiaridp~~~~-ae-----------------------------------------------------------  223 (353)
T COG4257         204 YASLAGNAIARIDPFAGH-AE-----------------------------------------------------------  223 (353)
T ss_pred             EEeccccceEEcccccCC-cc-----------------------------------------------------------
Confidence            776666666666654431 11                                                           


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                            .+..........+.+-.+|.|+.-++-...+.+..||..... -.++..      .+.+..-.++.++..++.-
T Consensus       224 ------v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypL------Pgs~arpys~rVD~~grVW  290 (353)
T COG4257         224 ------VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPL------PGSKARPYSMRVDRHGRVW  290 (353)
T ss_pred             ------eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeC------CCCCCCcceeeeccCCcEE
Confidence                  111111222344556667777777777778889999887655 222321      2444445566676666655


Q ss_pred             EEEeCCCeEEEEECCC
Q 004270          490 ISAGYHGDIKVWDFKG  505 (764)
Q Consensus       490 ~s~~~dg~v~iwd~~~  505 (764)
                      .+--..|.|.-+|-.+
T Consensus       291 ~sea~agai~rfdpet  306 (353)
T COG4257         291 LSEADAGAIGRFDPET  306 (353)
T ss_pred             eeccccCceeecCccc
Confidence            5444445555555443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.79  E-value=2.9  Score=42.25  Aligned_cols=163  Identities=14%  Similarity=0.065  Sum_probs=99.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeee-E-ec--C---cceE-EEEEeecCCEEEEEeCCCeEEEE-
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF-  542 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-~~--~---~~i~-~~~~s~~~~~la~~~~d~~i~v~-  542 (764)
                      .....|..+-..|||+.+..-+. ..+.++++.+...... + +.  +   ..++ ++..-..|..+.+++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            44566788889999998887665 6888898876543221 1 11  1   1122 12222345677888889888776 


Q ss_pred             EccCC-----eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270          543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       543 d~~~~-----~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~  617 (764)
                      |+..+     ..++.++-...++..+.--.+.+-+++-+..|++.++.....+.+-.-+.-..+.-+++||.+.+|++-.
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence            44332     1223333222334433333334556677788888887765555544334444677899999999998765


Q ss_pred             eCCCeEEEEecccccCCCCC
Q 004270          618 VDQNGVYLWVNRCMFSGDSN  637 (764)
Q Consensus       618 ~d~~~i~lW~~~~~~~~~~~  637 (764)
                      ..  .++++.++..+-.++.
T Consensus       377 ~g--ki~~~~l~Nr~Peisw  394 (733)
T COG4590         377 QG--KIRLAQLENRNPEISW  394 (733)
T ss_pred             CC--ceEEEEecCCCCCccH
Confidence            44  4999988776665553

>PHA02790 Kelch-like protein; Provisional

Probab=92.68  E-value=4.4  Score=43.75  Aligned_cols=96  Identities=13%  Similarity=0.039  Sum_probs=43.6

Q ss_pred             CCCCEEEEEeCCC-----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC--cEEEEEecCCCCCceee
Q 004270          235 DGQPLLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       235 d~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~  307 (764)
                      ++. ++++|+.++     .+..||..+++-...-.......-.+++ .-++...+.||.++  ++..|+.  ....+..+
T Consensus       271 ~~~-lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp--~~n~W~~~  346 (480)
T PHA02790        271 GEV-VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFH--GDAAWVNM  346 (480)
T ss_pred             CCE-EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEEC--CCCeEEEC
Confidence            344 677777543     4677888776533222101111111222 23666667777543  4555643  33333333


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          308 RFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      ..+....... +++ .-+|+..+.||.++
T Consensus       347 ~~l~~~r~~~-~~~-~~~g~IYviGG~~~  373 (480)
T PHA02790        347 PSLLKPRCNP-AVA-SINNVIYVIGGHSE  373 (480)
T ss_pred             CCCCCCCccc-EEE-EECCEEEEecCcCC
Confidence            2222111111 111 22666667777543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.63  E-value=13  Score=37.73  Aligned_cols=161  Identities=15%  Similarity=0.141  Sum_probs=93.7

Q ss_pred             CCeEEEEEccCCCEEEEEecCCc------EEEEECcCC-cccceecCcccccccc--------ccCcEEEEEECCCCCEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSERSNYA--------HNGEVVGVACDSTNTLM  489 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~------i~i~~~~~~-~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~l  489 (764)
                      +....+.+.+++..+++-+.+|.      +..+++... .............+..        -....-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            67888999976666666677776      666665541 1111110000000011        11145578887888888


Q ss_pred             EEEeCC------CeEEEEECCCCCeeeeEe----------------cCcceEEEEEeecCCEEEEEeC-----CC--e--
Q 004270          490 ISAGYH------GDIKVWDFKGRDLKSRWE----------------VGCSLVKIVYHRVNGLLATVAD-----DL--V--  538 (764)
Q Consensus       490 ~s~~~d------g~v~iwd~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~la~~~~-----d~--~--  538 (764)
                      ++.-.+      ..|..++.. ++....+.                ......+++++|+|+.|.++.+     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            877777      778888866 55544431                2356789999999996666543     22  1  


Q ss_pred             -----EEEE--EccC-CeEEE----Eeec-----CCCCeeEEEEcCCCcEEEEE-----eCCCcEEEEEc
Q 004270          539 -----IRLF--DVVA-LRMVR----KFEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV  586 (764)
Q Consensus       539 -----i~v~--d~~~-~~~~~----~~~~-----h~~~i~~l~~s~dg~~l~s~-----s~dg~i~iwd~  586 (764)
                           ++++  |..+ ++...    .+..     ....|+++.+-+++++|+--     +....++|+.+
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                 4554  5444 22222    2332     34678999999999987732     12345666644

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.61  E-value=1.7  Score=44.52  Aligned_cols=144  Identities=15%  Similarity=0.123  Sum_probs=90.5

Q ss_pred             ccCCCEEE-EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--------CEEEEEeCCCeEEEEEC
Q 004270          433 SACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDF  503 (764)
Q Consensus       433 s~~g~~l~-~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~v~iwd~  503 (764)
                      ..+.+.++ .|.....++-.|+..|+.+....        -|..-  -+.+.|..        +.|+-.+..+..+|=-.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR  545 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPR  545 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEee--------cCCcc--eeecCCchhHHhcCccceEEeecccceEEeccc
Confidence            33444443 34455677888888888887764        33333  45566643        34554444443333222


Q ss_pred             CCCCeeeeEecCcceEEEEEe----ecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270          504 KGRDLKSRWEVGCSLVKIVYH----RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       504 ~~~~~~~~~~~~~~i~~~~~s----~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      -.+..+...+.....+.-.||    ..+.++|+++..|.|++||.-.-+....+.+-...|..+..+.+|+++++.+. .
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~  624 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N  624 (776)
T ss_pred             ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence            234333333333333322233    35779999999999999997766666677888889999999999999886664 5


Q ss_pred             cEEEEEcC
Q 004270          580 SLRIWDVI  587 (764)
Q Consensus       580 ~i~iwd~~  587 (764)
                      ++.+-|++
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            67777764

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=92.53  E-value=9.2  Score=36.43  Aligned_cols=135  Identities=12%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             CeEEEEEEe-----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCC-----eEEEEECCeEEEEecCceEEEec-----
Q 004270           26 TENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS-----   90 (764)
Q Consensus        26 ~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~-----~~~~a~g~~i~vw~~~~~~~~~~-----   90 (764)
                      ...|+++..     +..++||.-.+...-...++.|..|.++-....     .+-+|+|..|++|+.-+....+.     
T Consensus        30 d~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~~  109 (257)
T PF14779_consen   30 DYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPLE  109 (257)
T ss_pred             eEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCCC
Confidence            446666664     468999988877766666666776666655432     56778899999986332211100     


Q ss_pred             ----------------------------------------------------------------ccccceEEEEE-----
Q 004270           91 ----------------------------------------------------------------RHSAKVNLLLL-----  101 (764)
Q Consensus        91 ----------------------------------------------------------------~h~~~v~~l~~-----  101 (764)
                                                                                      .+...|+||+.     
T Consensus       110 ~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~  189 (257)
T PF14779_consen  110 INPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKSS  189 (257)
T ss_pred             CCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeecccc
Confidence                                                                            24456888874     


Q ss_pred             -e---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE---EeCCCCCCEEEEEeCCCcEEEE
Q 004270          102 -F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus       102 -~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                       +   -..|+.|.++|.|.|-|-+....    +.......-.+..++   +....  -+|++++.||.|++.
T Consensus       190 ~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  190 ADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI  255 (257)
T ss_pred             cCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence             1   25799999999999999887766    555555443332222   22123  378999999988764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.45  E-value=10  Score=36.05  Aligned_cols=243  Identities=12%  Similarity=0.046  Sum_probs=145.3

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...-..++-.|||. +-+++...|.|--.|..+|+....-. +....-..+..-|||..-++-+..   -|-.++..+..
T Consensus        61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e  135 (353)
T COG4257          61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE  135 (353)
T ss_pred             CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence            34567788889998 78888888889889999998766555 566667778888888766554332   23333433222


Q ss_pred             ceeeEe-ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       304 ~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                      ...... ...-........|.+.|++-+++.. |.---.|.                                       
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP---------------------------------------  175 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP---------------------------------------  175 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence            222111 1223346677788888877777642 11000010                                       


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                     ..+.+.+|+..              .......++..|+|..-++...+..|...|..++.. ..+
T Consensus       176 ---------------a~~~i~vfpaP--------------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~  225 (353)
T COG4257         176 ---------------ARNVISVFPAP--------------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV  225 (353)
T ss_pred             ---------------ccCceeeeccC--------------CCCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence                           01222333322              125567789999999999988888898888887732 222


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeE
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI  539 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i  539 (764)
                      ..+     ......-+.+-.+|.++.-+|....+.+.-+|-.... -.++...   ..-.++.....++.-.+-...+.|
T Consensus       226 p~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai  299 (353)
T COG4257         226 PQP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI  299 (353)
T ss_pred             cCC-----CcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence            211     1223445667778888888887777888888766544 3333332   334455555555544444445566


Q ss_pred             EEEEccCC
Q 004270          540 RLFDVVAL  547 (764)
Q Consensus       540 ~v~d~~~~  547 (764)
                      .-+|-++.
T Consensus       300 ~rfdpeta  307 (353)
T COG4257         300 GRFDPETA  307 (353)
T ss_pred             eecCcccc
Confidence            66665543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.38  E-value=0.67  Score=43.54  Aligned_cols=63  Identities=21%  Similarity=0.313  Sum_probs=48.1

Q ss_pred             EcCCCcEEEEEeCCCcEEEEEcCccceEEEE---------------eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       565 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +..++.+|++.+.+|.+++||+.+++.+..-               .....|..+.++.+|.-+++-+. +. .|.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~-~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD-SYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC-EEEeccc
Confidence            4457889999999999999999988765322               12234999999999988887664 53 8999864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=92.17  E-value=13  Score=40.24  Aligned_cols=179  Identities=7%  Similarity=-0.054  Sum_probs=87.4

Q ss_pred             cCCeEEEEEEeC-----CeEEEEecCCCeEEEecCCC-CcceEEEEEeCCeEEEEECC----eEEEEecCce----EEEe
Q 004270           24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQ----VATW   89 (764)
Q Consensus        24 ~~~~~~~~~~~~-----~~i~iwd~~~~~~~~~~~~~-~~~I~~~~~~~~~~~~a~g~----~i~vw~~~~~----~~~~   89 (764)
                      .++..+++++.+     .++..||..+++-....+.. +..-.+++...+..|+..|.    .+..|+..+.    +..+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            456666777653     35778999987765554322 22223444555666666553    2777875432    1112


Q ss_pred             cccccceEEEEEeCCEEEEEecCC---cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        90 ~~h~~~v~~l~~~g~~l~s~~~dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      ............+|...+.|+.++   .+..||..+.+-..  .........  ..++..-++   +|++.+  |.+..|
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y  420 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY  420 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence            211222233345677667766543   47788876654321  111111111  122223333   455543  457889


Q ss_pred             eCCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCC
Q 004270          167 NISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYD  213 (764)
Q Consensus       167 d~~~~~~~--~~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~  213 (764)
                      |.++.+=.  ..+.........  ..-++++.++|+.+     ..+..||..++
T Consensus       421 dp~~~~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cCCCCcEeEcCCCCCCccccEE--EEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            88765322  222211122222  22356677777654     24556665544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.15  E-value=0.015  Score=58.35  Aligned_cols=147  Identities=14%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       185 ~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      ....|-|.+.-+++++.+..+..||-. ++.......  .+....++|..++...++.+-..+.+.+||+.+......-.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            345677777779999999999999843 444444433  56778899999888666667788999999997653322221


Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                       +-...-.-+.|++..+.++.+...+.+.+++....    +.......|...++++++.+.+. .+.++.|..+.+
T Consensus       115 -gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v  184 (615)
T KOG2247|consen  115 -GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV  184 (615)
T ss_pred             -cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence             22222233789999999999988999999976554    34444434999999999998774 455555554433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.99  E-value=3.3  Score=41.99  Aligned_cols=100  Identities=12%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe----cC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      ...++|.++.|++|++.++.--.|..|.++++...+......    .. ..|...+|+.. .-+|...+.| +.+|....
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            456799999999999999999999999999985444333222    22 45888888875 5555555443 55554432


Q ss_pred             -CeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270          547 -LRMVRKFEGHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       547 -~~~~~~~~~h~~~i~~l~~s~dg~~l~  573 (764)
                       .+.++..+.|...|+...|.++-+.+.
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEe
Confidence             334556667888899999998877544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.91  E-value=0.033  Score=56.13  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEEccCCceEEEE
Q 004270          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF  219 (764)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g-~~dg~i~iwd~~~~~~~~~~  219 (764)
                      ....+-|.+  .-+++++.+..+..|| +.++....... .+....++|..+++.+++. -..+.+.+|++.+... .++
T Consensus        38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL  112 (615)
T KOG2247|consen   38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL  112 (615)
T ss_pred             ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence            344566777  4488888989999999 45555555544 5566678888888876654 4568999999975432 222


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~  281 (764)
                      ..+....-.-+.|++.+. .++.|...|.+.|++..+.+.....- .|...++++++.+.+.
T Consensus       113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY  172 (615)
T ss_pred             hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce
Confidence            211122222378888877 78888899999999987766555543 4889999999988764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.88  E-value=0.75  Score=29.59  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             CCEEEEEEeeCCC--CEEEEEeCCCcEEEEECCCc
Q 004270          225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       225 ~~v~~l~fs~d~~--~~l~sg~~dg~i~iwd~~~~  257 (764)
                      +.|.++.|+|+..  .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999997543  58888888899999999853

It contains a characteristic DLL sequence motif.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.82  E-value=23  Score=38.85  Aligned_cols=152  Identities=16%  Similarity=0.222  Sum_probs=84.3

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eEecCcc--eEEEEEee------cCCEEEEEeC-C---Ce
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCS--LVKIVYHR------VNGLLATVAD-D---LV  538 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~--i~~~~~s~------~~~~la~~~~-d---~~  538 (764)
                      -...|.++.+.++++.++..-.+|.|.+||+..+....  .+.....  +.--.|-+      ...++.+.+. +   -.
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            36788999999999999999999999999994332221  1211111  11002222      1234444443 2   25


Q ss_pred             EEEEEc-cCCeEEEEee---cCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-------eEEEEE
Q 004270          539 IRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------ITALSL  606 (764)
Q Consensus       539 i~v~d~-~~~~~~~~~~---~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------v~~l~~  606 (764)
                      .+++.+ .....+.++.   -+.....+..|.- +|+...-  .+++|.+|++++-+...++..+.-       +.++.-
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            677777 1122222332   1222223333332 5654433  678999999999988888776522       223322


Q ss_pred             cCCCCeEEEEEeCCCeEEEEecc
Q 004270          607 SPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       607 sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                       |..+.+..+..+  .|++.++.
T Consensus       286 -~s~nRvLLs~~n--kIyLld~~  305 (670)
T PF10395_consen  286 -PSPNRVLLSVNN--KIYLLDLK  305 (670)
T ss_pred             -CCCCeEEEEcCC--EEEEEeeh
Confidence             334444444433  49999974

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.61  E-value=9.4  Score=40.48  Aligned_cols=167  Identities=16%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             EEEEEeCC--eEEEEECCeEEEEecC---------ceEEEe-cccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccc
Q 004270           60 RALASYRD--YTFAAYGNHIAVVKRA---------HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL  127 (764)
Q Consensus        60 ~~~~~~~~--~~~~a~g~~i~vw~~~---------~~~~~~-~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~  127 (764)
                      ..+.+.+.  .-++++++.+++|+..         .....+ .++...+.++      ++.....|.|+.|+--+.....
T Consensus        29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~  102 (422)
T PF08801_consen   29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL  102 (422)
T ss_dssp             -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred             eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence            34444554  6778889999999952         222233 4444444444      4555678999999754433321


Q ss_pred             cceeeE---------ecCCccc-cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 004270          128 APVGHV---------KLDDKFT-PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA  197 (764)
Q Consensus       128 ~~~~~~---------~~~~~~~-~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la  197 (764)
                      .....+         ....... ...-..|.+    ++++..+|.|.....+....++++.-          .+...   
T Consensus       103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y----------~~~~~---  165 (422)
T PF08801_consen  103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSY----------QQLSG---  165 (422)
T ss_dssp             EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-----------TT------
T ss_pred             CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEE----------EcCcC---
Confidence            111111         0111111 111234444    66666667666665554333333321          11100   


Q ss_pred             EEEcCCeEEEEEccCCceEEE-E--eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       198 ~g~~dg~i~iwd~~~~~~~~~-~--~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                            .....+...+..... +  .......|.+++..+..+ ++++.+.+|.|.+|++..
T Consensus       166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred             ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence                  000000000000000 0  111123488888888776 999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.52  E-value=0.96  Score=29.11  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             CCCcEEEEEe-CCCcEEEEEcCccceEEEEeeCCceEEEEEc
Q 004270          567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (764)
Q Consensus       567 ~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~s  607 (764)
                      |++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5777776655 5789999999999999988876656666664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.45  E-value=0.32  Score=53.12  Aligned_cols=176  Identities=16%  Similarity=0.292  Sum_probs=97.4

Q ss_pred             CceEEEEEccc--eeec-ceeecCCCCCCCCeEEEEE---ccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270          399 TAQAYVWRLQN--FVLG-EHILRPCPENPTAVKACTI---SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       399 ~~~~~~w~~~~--~~~~-~~~~~~~~~~~~~v~~~~~---s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                      -+...+|++.-  +.+. ...+.+.......+.-+.|   -++.-++.++..+|.+++.+...... ..+        .+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rs  222 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RS  222 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hh
Confidence            35667777653  2221 2222222222333344444   44667888999999999888765443 222        25


Q ss_pred             ccCcEEEEE-----------ECCCCCEEEEEeCCCeEEEEECC-C----CCeeeeEecCc--ceEEEEEeecCC------
Q 004270          473 HNGEVVGVA-----------CDSTNTLMISAGYHGDIKVWDFK-G----RDLKSRWEVGC--SLVKIVYHRVNG------  528 (764)
Q Consensus       473 h~~~v~~l~-----------~~~~~~~l~s~~~dg~v~iwd~~-~----~~~~~~~~~~~--~i~~~~~s~~~~------  528 (764)
                      |...++.++           .+|||+.++.++.||.+++|-+. +    ..++..++.+.  +-.|..++.+..      
T Consensus       223 Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~  302 (1283)
T KOG1916|consen  223 HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG  302 (1283)
T ss_pred             cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence            655555443           68999999999999999998764 2    24455555553  333333333211      


Q ss_pred             ---EEEEEeC-CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc--------E----EEEEeCCCcEEEEEc
Q 004270          529 ---LLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--------W----LLSSGMDGSLRIWDV  586 (764)
Q Consensus       529 ---~la~~~~-d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~--------~----l~s~s~dg~i~iwd~  586 (764)
                         +++++++ +..+++|....++++-.  -....|..+. -+||.        |    +++-+-|++|.+|.=
T Consensus       303 ~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  303 KWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             eeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence               3344433 55788888777766511  1122233333 22222        2    344566888888853

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.30  E-value=17  Score=36.32  Aligned_cols=148  Identities=9%  Similarity=0.062  Sum_probs=74.7

Q ss_pred             CCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee------------
Q 004270          193 LDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------------  259 (764)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~------------  259 (764)
                      +++|+.|+.+|...+. +... .....+..  ..+|+++...+.-+.+++.++....++.+++..-..            
T Consensus        13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~--~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIG--RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             CcEEEEEeCCceEEEE-cccCCCCeEEecC--cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            3689999999855544 5432 22222222  568999999988773444555555699999843221            


Q ss_pred             --eeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecC--CCEEE
Q 004270          260 --QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYAN--GRHIL  330 (764)
Q Consensus       260 --~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~--~~~l~  330 (764)
                        ......+|.............. .++++....+|.++.+...-......+..    ..-..++..+..+++  ...+.
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc  169 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC  169 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence              0011224444444444443222 34445556677776544332121222210    011223333333332  45667


Q ss_pred             EEeCCCcEEEEEe
Q 004270          331 SAGQDRAFRLFSV  343 (764)
Q Consensus       331 s~~~dg~i~i~d~  343 (764)
                      .|+..+...++++
T Consensus       170 vG~~~~~~~~~~~  182 (302)
T smart00036      170 IGSDKGGGDVVQF  182 (302)
T ss_pred             EEEcCCCCeEEEE
Confidence            7765433555555

Unpublished observations.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.28  E-value=32  Score=39.39  Aligned_cols=86  Identities=9%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCC------cEEEEEeCCCcE
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSL  581 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg------~~l~s~s~dg~i  581 (764)
                      ++..+..+.-+.-.-+...++++..+|.+.-+.......+..+.   .-...|.++++.++.      ++++.++.|+++
T Consensus       533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v  612 (1205)
T KOG1898|consen  533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV  612 (1205)
T ss_pred             cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence            44444444444444446677777778877777654333333332   234668899998865      689999999999


Q ss_pred             EEEEcCccceEEEEe
Q 004270          582 RIWDVILARQIDAIH  596 (764)
Q Consensus       582 ~iwd~~~~~~~~~~~  596 (764)
                      ++..+.....+..+.
T Consensus       613 riisL~p~d~l~~ls  627 (1205)
T KOG1898|consen  613 RIISLDPSDCLQPLS  627 (1205)
T ss_pred             eEEEecCcceEEEcc
Confidence            999998766666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.13  E-value=12  Score=34.36  Aligned_cols=143  Identities=15%  Similarity=0.232  Sum_probs=85.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECC--CCCeeeeEecCcceEEEEEeecCCEEEEEeCC---C---eEEEE---Ecc--
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFK--GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---L---VIRLF---DVV--  545 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~---~i~v~---d~~--  545 (764)
                      .++..+. +.|..+...+.|.+|++.  ..+.+..+..-+.|..+.++..|++|++--.+   .   .+|+|   ...  
T Consensus        22 ~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            3444432 344444566789999988  44566677777999999999999999986432   2   56665   221  


Q ss_pred             CCeEEE-EeecC---------------------CCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccce-E---EEEee-
Q 004270          546 ALRMVR-KFEGH---------------------TDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQ-I---DAIHV-  597 (764)
Q Consensus       546 ~~~~~~-~~~~h---------------------~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~-~---~~~~~-  597 (764)
                      ...+++ ++-||                     ..++.+++..| .|+.|+ |+ ++.+.+|.+..+.. .   ..+.. 
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe  178 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFE  178 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEech
Confidence            112222 22232                     22456677766 455444 44 56799998875433 1   11111 


Q ss_pred             ------CCc--eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          598 ------DVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       598 ------~~~--v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                            +..  +..+++.  +.|+|..+...  +++..+
T Consensus       179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s~~e--v~Vlkl  213 (215)
T PF14761_consen  179 RSLIDHIDNFKPTQVAIC--EGYIAVMSDLE--VLVLKL  213 (215)
T ss_pred             hhhhheecCceEEEEEEE--eeEEEEecCCE--EEEEEE
Confidence                  222  5566664  56888887665  666544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.90  E-value=8.7  Score=32.22  Aligned_cols=121  Identities=17%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-----CCCEEEEEeCCCeEEEEECCC
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG  505 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~  505 (764)
                      .|......|++++..|.|.+++........... ........-...|++++-.+     ....|+.|+ ...+..||...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~-~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ-DSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccc-cCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            344445578888999999999876543322110 00001114556788886544     235566555 46889999998


Q ss_pred             CCeeeeEecCcceEEEEEeec---CCEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270          506 RDLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF  553 (764)
Q Consensus       506 ~~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~i~v~d~~~~~~~~~~  553 (764)
                      ..-+...+.+..+.++.+-.-   ..-++..+.+..|.-||.+..+...+.
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            877777777788888877542   234555555677777777665554443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.63  E-value=6.5  Score=40.75  Aligned_cols=30  Identities=17%  Similarity=0.001  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFN  452 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~  452 (764)
                      -.-.|..+..++.|..++..+.+|.+.++=
T Consensus       102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             ceEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            345778899999999999999999776654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.59  E-value=2.7  Score=39.50  Aligned_cols=76  Identities=11%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-------e-------cCCCCeeEEEEcCCCcEEEEEe
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-------~-------~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .+..+.++..  +..++.+|++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+
T Consensus         8 ~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen    8 PIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             cEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            3344444444  4456889999999999999999998775432       1       2445677888888887766654


Q ss_pred             CCCcEEEEEcCcc
Q 004270          577 MDGSLRIWDVILA  589 (764)
Q Consensus       577 ~dg~i~iwd~~~~  589 (764)
                       +|..+.|+..-+
T Consensus        86 -ng~~y~y~~~L~   97 (219)
T PF07569_consen   86 -NGDSYSYSPDLG   97 (219)
T ss_pred             -CCCEEEeccccc
Confidence             567788876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.57  E-value=22  Score=36.32  Aligned_cols=122  Identities=19%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             CcEEEEEE--CC-CCC-EEEEEeCCCeEEEEECC---CC----CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          475 GEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       475 ~~v~~l~~--~~-~~~-~l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                      ..+.++|+  ++ +|. +++..+.+|.+..|.+.   .+    ++++.+.....+..+........|.++-++.-|.-|+
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~  235 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYD  235 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEe
Confidence            34677776  33 344 56667788998888774   23    4678888889999999999999999999999999998


Q ss_pred             ccC-----CeEEEEeec--CCCCeeEEEEc--CCC-cEEEEEe-CCCcEEEEEcCc-cceEEEEe
Q 004270          544 VVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLLSSG-MDGSLRIWDVIL-ARQIDAIH  596 (764)
Q Consensus       544 ~~~-----~~~~~~~~~--h~~~i~~l~~s--~dg-~~l~s~s-~dg~i~iwd~~~-~~~~~~~~  596 (764)
                      .+-     ++.+....+  ....|-.|++-  ++| .||+.++ .+++..||+... ...+..|+
T Consensus       236 Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~  300 (381)
T PF02333_consen  236 AEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR  300 (381)
T ss_dssp             SSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred             cCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence            762     233433333  34567777764  344 3555444 678899999875 35555554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.26  E-value=38  Score=40.07  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY  212 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~  212 (764)
                      ......++|+|.-.++|.|+.+|.|.++....
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccc
Confidence            44567889999999999999999999997553

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.08  E-value=11  Score=38.47  Aligned_cols=238  Identities=15%  Similarity=0.172  Sum_probs=115.3

Q ss_pred             EEEEeCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe----
Q 004270           98 LLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK----  172 (764)
Q Consensus        98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~----  172 (764)
                      .+...|+.-+-.+.||.=..|.+.+-... -.++++....... ..-+-.|.+. ..++.|..+|.+.+....-..    
T Consensus        75 gm~~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~pp-v~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~  152 (733)
T COG4590          75 GMGAYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPP-VLWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPT  152 (733)
T ss_pred             ecccccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCC-cccccCCCCC-ceEEEeccCCeEEEEeccccccCCC
Confidence            33445666666677888788887654321 1112222211111 1122233343 578889999999888642110    


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCC--------EEEEEEcCCeEEEEEccC-----------Cc-eEEEEeccCCCCEEEEEE
Q 004270          173 KLYEFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVRY-----------DE-ELVTFTHSMRGAVTALAF  232 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~--------~la~g~~dg~i~iwd~~~-----------~~-~~~~~~~~~~~~v~~l~f  232 (764)
                      +-..|..   .-.-++..+.|+        +...++.+....+++...           .+ .+..+... ...|..+-.
T Consensus       153 pg~~Fp~---g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL  228 (733)
T COG4590         153 PGREFPP---GLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLL  228 (733)
T ss_pred             CCccCCC---CCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEE
Confidence            1111111   111123333332        222333333333443321           12 22223222 467888889


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCceeeee--eecccc---cCee-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270          233 SSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~h~---~~v~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (764)
                      .|||+ .+..-+. ..+.++++.+......  ......   ..|+ ++.....|.-++.++.||-|.-|---..++.+..
T Consensus       229 ~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l  306 (733)
T COG4590         229 TPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL  306 (733)
T ss_pred             CCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence            99999 6655443 6788888876543222  111111   1222 2333446677888999999999843222222222


Q ss_pred             e--EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          307 L--RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       307 ~--~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      .  +.++-...++..+.-..+.+-+++-+..|++..+..
T Consensus       307 ~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s  345 (733)
T COG4590         307 NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS  345 (733)
T ss_pred             eeeeccccCcccceeeccccccceEEEEcCCCceeeeec
Confidence            2  222222233333332224455667777777776654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.87  E-value=27  Score=38.54  Aligned_cols=93  Identities=11%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCe-----EEEEECC---CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~-----v~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      +.-..+.|-|.|..+++-+.||.     |.++.-+   .|+.-............+|.-....+|++ ....+.+|-...
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN  325 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN  325 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence            33345789999999999886653     6666533   22222222333445556666555555544 345788887655


Q ss_pred             CeEEEEeecCCCCeeEEEEcCC
Q 004270          547 LRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       547 ~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      -.--.+..-.-..+.-+.|+|.
T Consensus       326 yhWYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             eEEEEEEeecCCCcceeeeccc
Confidence            4322222222233455666663

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.25  E-value=18  Score=40.82  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIER  450 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i  450 (764)
                      ....|..+.++|+|++++..+..|...+
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            3468999999999999999888764444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.53  E-value=52  Score=37.81  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=54.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee----cCcccc-c------cccccCcEEEEEECCCCCEEEEE
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-S------NYAHNGEVVGVACDSTNTLMISA  492 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~----~~~~~~-~------~~~h~~~v~~l~~~~~~~~l~s~  492 (764)
                      ...|.+++...-+.+++....||+|.++|..+.+.....    ...... .      ...+...+..++|||.+-.++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            367888998889999999999999999999887665544    111100 0      01122245568899999999999


Q ss_pred             eCCCeEE
Q 004270          493 GYHGDIK  499 (764)
Q Consensus       493 ~~dg~v~  499 (764)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.41  E-value=10  Score=41.05  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcE
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL  581 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i  581 (764)
                      |+-.|+....+.+.+.+--+.++..+..|..-...-.++++|+.+.+....+    +-.+-+.|-|-...++.-+.|. +
T Consensus       324 dli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l  398 (1636)
T KOG3616|consen  324 DLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-L  398 (1636)
T ss_pred             ecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-e
Confidence            4444555555555566666666666666666666667778887754321111    1234578888887777666555 6


Q ss_pred             EEE-EcCccceEEEEeeCCceEE
Q 004270          582 RIW-DVILARQIDAIHVDVSITA  603 (764)
Q Consensus       582 ~iw-d~~~~~~~~~~~~~~~v~~  603 (764)
                      .|| ++.-.+.+..++....|..
T Consensus       399 ~iwyn~d~peqvt~~kikgdv~~  421 (1636)
T KOG3616|consen  399 CIWYNIDAPEQVTMFKIKGDVEA  421 (1636)
T ss_pred             EEEecCCcchhheeeEecccchh
Confidence            666 5555566666655444433

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.58  E-value=25  Score=33.55  Aligned_cols=145  Identities=15%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-C--CcEEEEECCCc-eeeeeee----cccccCeeEEEE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKR-RLQSVIR----EAHDNAIISLHF  276 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-d--g~i~iwd~~~~-~~~~~~~----~~h~~~v~~l~~  276 (764)
                      -.+||+.+++... +.....-...+-+|.+||+ +|.+|+. +  ..+++++..+. .......    ......=-+..-
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            4689998876533 3333244555567889999 8888874 2  35788876541 0000000    012223334556


Q ss_pred             ecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccC-----CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          277 FANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       277 ~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      .|||+.|+.|+..+- ..+|.-.........+..+..     ...---.+...|+|+.++.+..+.  .+||..+.+..+
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            789999999887643 334422111111111111111     111122455678999998887654  567877765544


Q ss_pred             ccc
Q 004270          351 ELS  353 (764)
Q Consensus       351 ~~~  353 (764)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.37  E-value=42  Score=35.44  Aligned_cols=71  Identities=21%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCCe--E----EEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          527 NGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~--~----~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                      +.+|+.+-..+.|....++..+  .    ...+.. .++|.++..+||| .+.+..+.+|.+.=   +++....++..+.
T Consensus       369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~---~~~~~~~~~~~~~  444 (454)
T TIGR03606       369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK---DDGSVTNTLENPG  444 (454)
T ss_pred             CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc---CCCCceeEecCCC
Confidence            6788888888888888886442  2    223443 6799999999997 55555556665432   3344444444444


Q ss_pred             ce
Q 004270          600 SI  601 (764)
Q Consensus       600 ~v  601 (764)
                      .|
T Consensus       445 ~~  446 (454)
T TIGR03606       445 SI  446 (454)
T ss_pred             eE
Confidence            33

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.24  E-value=34  Score=34.20  Aligned_cols=227  Identities=9%  Similarity=0.015  Sum_probs=114.5

Q ss_pred             eEEEEEEeCCeEEEEecCC--CeEEEecCCCCcceEEEEEeCC--eEEEEECCe--EEEEecCceE--------------
Q 004270           27 ENFVTVSVGKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD--YTFAAYGNH--IAVVKRAHQV--------------   86 (764)
Q Consensus        27 ~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~I~~~~~~~~--~~~~a~g~~--i~vw~~~~~~--------------   86 (764)
                      ++++.++.+|-+.++ ...  .+.....  ...+|++|.+.+.  ..++.+|..  +++++.....              
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            578888887777666 554  4455554  4679999998877  334455766  9999852111              


Q ss_pred             ---EEecccccceEEEEE-eCC--EEEEEecCCcEEEEEccCCcccccceeeE---e-cCCccccEEEEeCCCCCCEEEE
Q 004270           87 ---ATWSRHSAKVNLLLL-FGE--HILSIDIDGNMFIWAFKGIEENLAPVGHV---K-LDDKFTPTCIMHPDTYLNKVIV  156 (764)
Q Consensus        87 ---~~~~~h~~~v~~l~~-~g~--~l~s~~~dg~v~vWd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~l~~  156 (764)
                         ...-+|......+.. .++  .++.+....+|.++............+.+   . ........+..+++.....+.+
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence               112234433333333 333  22333445667775543331111112211   1 1122222333444432367888


Q ss_pred             EeCCCcEEEEeCCC--CeEEE-----EEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCE
Q 004270          157 GSQEGSLQLWNIST--KKKLY-----EFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAV  227 (764)
Q Consensus       157 ~~~dg~i~iwd~~~--~~~~~-----~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v  227 (764)
                      |+..+...++++..  ...-.     ...... .++..... +++.+|++ .. ......|.. | +........-.+..
T Consensus       171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~-~~~v~Vn~~-G~~~~r~~~l~w~~~p  246 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YD-EFGVFVNLY-GKRRSRNPILHWEFMP  246 (302)
T ss_pred             EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-EC-cEEEEEeCC-CCccccceEEEcCCcc
Confidence            88763355665533  11000     011111 34444343 44445444 33 345555554 4 22222111124566


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      .++++..  . +++.-. +..|.++++.+++.++.+.
T Consensus       247 ~~~~~~~--p-yll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      247 ESFAYHS--P-YLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             cEEEEEC--C-EEEEEc-CCcEEEEECCCCceEEEEe
Confidence            7788774  4 444444 5569999999999888886

Unpublished observations.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.15  E-value=17  Score=30.58  Aligned_cols=112  Identities=13%  Similarity=0.027  Sum_probs=72.3

Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCC--------CCeeeeEecCcceEEEEEee-----cCCEEEEEeCCCeEEEEEccCC
Q 004270          481 ACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHR-----VNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       481 ~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~i~~~~~s~-----~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      .|+.....|+.++.-|+|.|++...        ...+..+.....|++++-.+     +...|++|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            4555666788888889999998663        34566777788888887766     244666665 457999999877


Q ss_pred             eEEEEeecCCCCeeEEEEcC---CCcEEEEEeCCCcEEEEEcCccceEEE
Q 004270          548 RMVRKFEGHTDRITDFCFSE---DGKWLLSSGMDGSLRIWDVILARQIDA  594 (764)
Q Consensus       548 ~~~~~~~~h~~~i~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~~~~~~  594 (764)
                      .-+.--. -.+.|+++.+-.   ...-|+..+.+..|.-+|..-.+...+
T Consensus        84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             chhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            5543333 235677776632   122344445577788888664444433

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.10  E-value=39  Score=34.68  Aligned_cols=41  Identities=5%  Similarity=0.035  Sum_probs=19.7

Q ss_pred             CcEEEEECCCceeeeeeeccccc-CeeEEEEecCCCEEEEEcC
Q 004270          247 GVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPVLMSASA  288 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~  288 (764)
                      ..+.+||..+.+-...-...... .-.+++ .-++++.+.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence            46888998776433221101111 112222 336667777765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=86.77  E-value=35  Score=33.80  Aligned_cols=167  Identities=10%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             cEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-----CEE-EEEeCCCeEEEEECCCCCeeeeEec------
Q 004270          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLM-ISAGYHGDIKVWDFKGRDLKSRWEV------  514 (764)
Q Consensus       447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l-~s~~~dg~v~iwd~~~~~~~~~~~~------  514 (764)
                      .|..||+.+++.+..+.-+....  ...+....+.++...     .++ ++=+..+-|.|+|+.+++..+....      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            68889999998877775433221  245678888887732     233 3333446899999998865544432      


Q ss_pred             --------------CcceEEEEEee---cCCEEEEEeCCCeEEEEEccCC--------------eEEEEeecCCCCeeEE
Q 004270          515 --------------GCSLVKIVYHR---VNGLLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDF  563 (764)
Q Consensus       515 --------------~~~i~~~~~s~---~~~~la~~~~d~~i~v~d~~~~--------------~~~~~~~~h~~~i~~l  563 (764)
                                    ...+..++.+|   +++.|....-.+ -++|.+.+.              +.+..+-........+
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                          23355555554   555555544322 122222211              1122221112356778


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcCcc---ceEEEEe-eCC---ceEEEEEcC--CCCeEEEE
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITALSLSP--NMDVLATA  616 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~~~---~~~~~~~-~~~---~v~~l~~sp--~g~~lat~  616 (764)
                      +++++|.+.++--..+.|..|+..+.   +....+. -+.   -+.++.+.+  +|.+-+.+
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            99999998888889999999998751   1223332 222   278888888  66655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.41  E-value=3.1  Score=45.97  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             ecCCEEEEEeCCCeEEEEEccC----CeEEEEe-----------ec-----------CCCCeeEEEEcC----CCcEEEE
Q 004270          525 RVNGLLATVADDLVIRLFDVVA----LRMVRKF-----------EG-----------HTDRITDFCFSE----DGKWLLS  574 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d~~~----~~~~~~~-----------~~-----------h~~~i~~l~~s~----dg~~l~s  574 (764)
                      ++...++++..||.+.......    +......           .+           ..+...+++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3567778888888887777654    2121111           00           123455666766    7789999


Q ss_pred             EeCCCcEEEEEcCccceEEEEe
Q 004270          575 SGMDGSLRIWDVILARQIDAIH  596 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~  596 (764)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=86.37  E-value=40  Score=34.14  Aligned_cols=67  Identities=13%  Similarity=0.051  Sum_probs=35.4

Q ss_pred             CCCEEEEEEc-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC----cEEEEECCCcee
Q 004270          192 ALDVVAVGCS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEKRRL  259 (764)
Q Consensus       192 ~~~~la~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~  259 (764)
                      ++++.+.|+.     ...+..||+.+.+-...-...........+..-+++ +.+.|+.++    .+.+||.++.+-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCee
Confidence            4566666664     246888888766532211111111122223334566 777777653    356888887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=86.17  E-value=27  Score=42.18  Aligned_cols=153  Identities=10%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      .|...++.+.-+++|..+=.  .|+.++.||.....-.. .......+++.+.-.-||+ +.+   .++. .+-|+..+.
T Consensus       360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~-~l~nLSs~~  431 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDD-TLVNLSSGQ  431 (1774)
T ss_pred             HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCC-ceeecCCCC
Confidence            45566677777777776654  46777777766442110 1122234556666666666 333   2221 133444433


Q ss_pred             eeeeeecccccCeeEEEEecCCCE-EEEEcCCCcEEEEEecCCCCCcee----eEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      ....    .-..+.+...++++.. ++++-....+.+|++....+..+.    ...+.+-.....+|.++++  .|+.+.
T Consensus       432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD  505 (1774)
T PF11725_consen  432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD  505 (1774)
T ss_pred             cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence            2111    1235677778888886 555555566799998876544332    2222333346677778766  688888


Q ss_pred             CCCcEEEEEeec
Q 004270          334 QDRAFRLFSVIQ  345 (764)
Q Consensus       334 ~dg~i~i~d~~~  345 (764)
                      .+|.++.=++..
T Consensus       506 seGkLYsa~l~~  517 (1774)
T PF11725_consen  506 SEGKLYSADLPA  517 (1774)
T ss_pred             CCCCEEeccccc
Confidence            888877766543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PLN02193 nitrile-specifier protein

Probab=85.85  E-value=55  Score=35.26  Aligned_cols=183  Identities=8%  Similarity=-0.029  Sum_probs=0.0

Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCcccccccc--
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYA--  472 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~--  472 (764)
                      ..+..||..+.....................+..-+++..+.|+.+     ..+..||+.+.+-.....        .  
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~--------~~~  264 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP--------VEE  264 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCc--------CCC


Q ss_pred             -ccCcEEEEEECCCCCEEEEEeCCCe-----EEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCC----Ce
Q 004270          473 -HNGEVVGVACDSTNTLMISAGYHGD-----IKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADD----LV  538 (764)
Q Consensus       473 -h~~~v~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d----~~  538 (764)
                       ....-...+..-++++++.|+.++.     +..||+.+.+-...-...    ......+..-++++++.++.+    ..
T Consensus       265 ~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~d  344 (470)
T PLN02193        265 GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDD  344 (470)
T ss_pred             CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCc


Q ss_pred             EEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCC--------------cEEEEEcCccc
Q 004270          539 IRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDG--------------SLRIWDVILAR  590 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg--------------~i~iwd~~~~~  590 (764)
                      +.+||..+.+-...-..   ...+...-+..-++++++.|+.+.              .+.++|+.+.+
T Consensus       345 v~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        345 VHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             eEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.76  E-value=7.3  Score=30.25  Aligned_cols=44  Identities=16%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          577 MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      .+|.+.-||..+++.--.+..=.-.+.+++++|+++|+.+-...
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            46788899998887655555444578999999999988876544

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02153 epithiospecifier protein

Probab=85.63  E-value=45  Score=34.08  Aligned_cols=238  Identities=9%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             EEEEEeCCEEEEEecCC-------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEE
Q 004270           97 NLLLLFGEHILSIDIDG-------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQ  164 (764)
Q Consensus        97 ~~l~~~g~~l~s~~~dg-------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~  164 (764)
                      ..+..++...+.|+.+.       .+.++|..+.+-...+..............+..-++  ..++.|+.+     ..+.
T Consensus        27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~v~  104 (341)
T PLN02153         27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT--KLYIFGGRDEKREFSDFY  104 (341)
T ss_pred             eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC--EEEEECCCCCCCccCcEE


Q ss_pred             EEeCCCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEEcC-----------CeEEEEEccCCc--eEEEEeccCCCC
Q 004270          165 LWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNVRYDE--ELVTFTHSMRGA  226 (764)
Q Consensus       165 iwd~~~~~~~~~~~~-----h~~~i~~~~~sp~~~~la~g~~d-----------g~i~iwd~~~~~--~~~~~~~~~~~~  226 (764)
                      +||..+.+=...-.-     ........+..-++++.+.|+.+           ..+.+||.++.+  .+..........
T Consensus       105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r  184 (341)
T PLN02153        105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR  184 (341)
T ss_pred             EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC


Q ss_pred             EEEEEEeeCCCCEEEEEeCC-------------CcEEEEECCCceeeeeeecc--cccCeeEEEEecCCCEEEEEcC---
Q 004270          227 VTALAFSSDGQPLLASGASS-------------GVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASA---  288 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~d-------------g~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~---  288 (764)
                      -......-+++ +++.|+.+             ..+.+||+.+.+-...-..+  ........+..-++.+++.|+.   
T Consensus       185 ~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~  263 (341)
T PLN02153        185 GGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWP  263 (341)
T ss_pred             CcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCC


Q ss_pred             -------CCcE--EEEEecCCCCCceeeE-----eccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          289 -------DNSI--KMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       289 -------d~~i--~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                             .+..  .+|.++.....+..+.     .+........++....+++.++.||.++.
T Consensus       264 ~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~  326 (341)
T PLN02153        264 DLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT  326 (341)
T ss_pred             ccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.37  E-value=45  Score=33.79  Aligned_cols=107  Identities=7%  Similarity=0.042  Sum_probs=54.0

Q ss_pred             CCCEEEEEecC-----CcEEEEECcCCccc---ceecCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEE
Q 004270          435 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW  501 (764)
Q Consensus       435 ~g~~l~~g~~~-----g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iw  501 (764)
                      ++..+++|+.+     ..+..||+.+....   ...... +   .... .. +++. -++++.+.|+.     ...+..|
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-p---~~~~-~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~y  144 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-P---FTFE-NG-SACY-KDGTLYVGGGNRNGKPSNKSYLF  144 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC-C---cCcc-Cc-eEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence            56677777654     35677777665431   111110 0   0111 11 1122 24566666664     2357788


Q ss_pred             ECCCCCeeeeE--ecCcceEEEEEeecCCEEEEEeCCC----eEEEEEccCCe
Q 004270          502 DFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR  548 (764)
Q Consensus       502 d~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~----~i~v~d~~~~~  548 (764)
                      |..+.+-...-  .........+..-++++.+.|+.++    .+.+||..+.+
T Consensus       145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            88766433221  1112222333445677788887653    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.06  E-value=3.9  Score=25.73  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=0.0

Q ss_pred             EEEeecCCCCeeEEEEcCCCcEEE-EEeCC--CcEEEE
Q 004270          550 VRKFEGHTDRITDFCFSEDGKWLL-SSGMD--GSLRIW  584 (764)
Q Consensus       550 ~~~~~~h~~~i~~l~~s~dg~~l~-s~s~d--g~i~iw  584 (764)
                      ++.+......-...+|||||++|+ ++..+  |.-.||
T Consensus         1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13614 lipoprotein LpqB; Provisional

Probab=84.53  E-value=66  Score=35.26  Aligned_cols=140  Identities=9%  Similarity=0.051  Sum_probs=79.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC--eEEEEEcc-CCeE---
Q 004270          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVV-ALRM---  549 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~--~i~v~d~~-~~~~---  549 (764)
                      .+.+++.++++..++....|+. .+|-...+.....+-....++.-.|.+++ .+-+..++.  .|..+.-. +++.   
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~  421 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA  421 (573)
T ss_pred             cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence            6788999999999888877662 33433323333333334456677777776 444443333  43333321 1111   


Q ss_pred             ---EEEeecCCC-CeeEEEEcCCCcEEEE-EeCCCc--EEEEEc---CccceEEE-----EeeCCceEEEEEcCCCCeEE
Q 004270          550 ---VRKFEGHTD-RITDFCFSEDGKWLLS-SGMDGS--LRIWDV---ILARQIDA-----IHVDVSITALSLSPNMDVLA  614 (764)
Q Consensus       550 ---~~~~~~h~~-~i~~l~~s~dg~~l~s-~s~dg~--i~iwd~---~~~~~~~~-----~~~~~~v~~l~~sp~g~~la  614 (764)
                         ........+ .|+.+..|+||-.++. ...||.  |.|=-+   ..|.+...     +.....+.+++|..++.+++
T Consensus       422 ~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V  501 (573)
T PRK13614        422 PTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVV  501 (573)
T ss_pred             cceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEE
Confidence               111222334 4999999999976664 334554  666443   34542221     11124689999999998877


Q ss_pred             EEE
Q 004270          615 TAH  617 (764)
Q Consensus       615 t~~  617 (764)
                      .+.
T Consensus       502 ~~~  504 (573)
T PRK13614        502 TKA  504 (573)
T ss_pred             Eec
Confidence            764

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.52  E-value=96  Score=36.87  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      -+...+.+..+......+ .+...+.+-+|+.........+.....-.    ++++..++++..||.+..||...++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence            344555555555444433 33444667777655544444333322111    78899999999999999999988765

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=84.43  E-value=52  Score=33.73  Aligned_cols=13  Identities=0%  Similarity=-0.067  Sum_probs=8.8

Q ss_pred             CcEEEEECcCCcc
Q 004270          446 GWIERFNLQSGIS  458 (764)
Q Consensus       446 g~i~i~~~~~~~~  458 (764)
                      ..+.+||..+..-
T Consensus       168 ~~v~~YDp~t~~W  180 (346)
T TIGR03547       168 KNVLSYDPSTNQW  180 (346)
T ss_pred             ceEEEEECCCCce
Confidence            4678888876543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	764
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-04
2h9l_A	329	Wdr5delta23 Length = 329		6e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-08
2h9l_A	329	Wdr5delta23 Length = 329		5e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		3e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		3e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-04

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    +S  GNFAV  +    +  +NLQ+G  +  +L         H  +V+ VA    N
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S G    ++VW+ KG       R   + W    S V+        ++ +   D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++D+   R+V   +GHT+ +T    S DG    SS  DG  R+WD+     +  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 600 SITALSLSPN 609
            I  +  SPN
Sbjct: 239 PINQICFSPN 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 34/293 (11%)
Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATWSR----------HSAKVNLLLLF--GEHILSID 110
           +S R   F+  G  IA       V  W+R          HS+ VN +     G+ I S  
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 111 IDGNMFIWAFKG-IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169
            D  + +W   G + + L   GH              PD     +   S + +++LWN  
Sbjct: 282 DDKTVKLWNRNGQLLQTL--TGH----SSSVWGVAFSPDGQT--IASASDDKTVKLWN-R 332
Query: 170 TKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVT 228
             + L    G           P    +A    D  + + N R  + L T T HS   +V 
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS--SVR 389
Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288
            +AFS DGQ  +AS +    + +WN   + LQ++    H +++  + F  ++  + SAS 
Sbjct: 390 GVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASD 446
Query: 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
           D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA  D+  +L+
Sbjct: 447 DKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 13/189 (6%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
           +   S + +++LWN    + L    G           P    +A    D  + + N R  
Sbjct: 72  IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 214 EELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
           + L T T HS   +V  +AFS DGQ  +AS +    + +WN   + LQ++    H +++ 
Sbjct: 130 QLLQTLTGHSS--SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 184
Query: 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332
            + F  +   + SAS D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 333 GQDRAFRLF 341
             D+  +L+
Sbjct: 240 SDDKTVKLW 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Query: 460 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           GS++ + ER+   AH+  V GVA       + SA     +K+W+  G+ L++      S+
Sbjct: 1   GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
             + +      +A+ +DD  ++L++    ++++   GH+  +    FS DG+ + S+  D
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 579 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            ++++W+              S+  ++ SP+   +A+A  D+  V LW
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW 166

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 44  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 103
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 104 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 164 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 221 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNA 270
             + L T   +    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN 
Sbjct: 134 TGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNP 189
Query: 271 IIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---- 325
            +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN    
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVT 243
Query: 326 -GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
            G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 244 GGKWIVSGSEDNLVYIWNL----QTKEIVQK 270

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 63
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 64  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 101
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 153
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 212
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 213 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 271 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 308

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 123
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 124 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 157

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNA 270
             + L T   +    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN 
Sbjct: 138 TGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNP 193
Query: 271 IIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---- 325
            +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN    
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVT 247
Query: 326 -GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
            G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 248 GGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 139 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 193
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 247
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 248 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 275

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 68
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 69  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 106
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 158
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 217
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 218 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 276 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 128
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 129 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 162

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNA 270
             + L T   +    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN 
Sbjct: 137 TGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNP 192
Query: 271 IIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---- 325
            +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN    
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVT 246
Query: 326 -GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
            G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 GGKWIVSGSEDNLVYIWNL----QTKEIVQK 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 66
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 67  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 104
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 156
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 215
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 216 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 274 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 126
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 127 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 160

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNA 270
             + L T   +    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN 
Sbjct: 144 TGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNP 199
Query: 271 IIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---- 325
            +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN    
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVT 253
Query: 326 -GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
            G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 254 GGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 155 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 209
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 263
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 264 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 291

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 84
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 85  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 122
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 174
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 233
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 234 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 292 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 329

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 144
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 145 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 178

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 143 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 197
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 251
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 252 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 279

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 72
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 73  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 110
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 162
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 221
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 222 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 280 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 132
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 133 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 166

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNA 270
             + L T   +    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN 
Sbjct: 144 TGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNP 199
Query: 271 IIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---- 325
            +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN    
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVT 253
Query: 326 -GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
            G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 254 GGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 160 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 214
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 268
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 269 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 296

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 241

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 162 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 216
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 270
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 271 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 298

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 75  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 243

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 55/339 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+   +S+ G FA+ G+  G +  ++L +G+S         R    H  +V+ VA    N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 540
             ++SA     IK+W+  G    +  E G       S V+   + +   + + + D  ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           ++++   ++     GHT  ++    S DG    S G DG + +WD+   +++ ++  +  
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 601 ITALSLSPNMDVLATAHVDQNGVYLW 626
           I AL  SPN   L  A   ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN +K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/340 (19%), Positives = 138/340 (40%), Gaps = 57/340 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG---LLATVADDLV 538
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG   L AT+ +DL 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL- 219
Query: 539 IRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQID 593
            +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     + 
Sbjct: 220 -KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Query: 594 AI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
            +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 277 KLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 530
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ I +     LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A+ + D+ I+L+D      +R   GH   ++      +G  ++S+  D ++++W+V    
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 591 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 627
            +           + + PN D  ++A+   DQ  V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 517
           S LD   R NY  + +++   C      +I  G    + +WD      + + E+  S   
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              +     + +  +   D  I ++D+    +VR+F+GHTD  +    S DG  L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
           D ++R WD+   RQ+        I +L   P  + LA      N   L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G         + R    H  +V+ VA  S N
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 235 IINALCFSPNRYWLCAA 251

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G +         R    H  +V+ VA  S N
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 258 IINALCFSPNRYWLCAA 274

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V  V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           + +IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
            ++ +++   ++   F GH   I     S DG  + S+G DG + +W++   +    +  
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
           + ++ FS DG+  LA+GA   +I IW++E R++  +I + H+  I SL +F +   L+S 
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 338
           S D ++++W              R+G  +  L I            +G++I +   DRA 
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 339 RLF 341
           R++
Sbjct: 232 RVW 234

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
            LAT A+D +IR++D+   ++V   +GH   I    +   G  L+S   D ++RIWD+  
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 589 ARQIDAIHVDVSITALSLSP-NMDVLATAHVDQNGVYLWVNRCMF 632
            +    + ++  +T +++SP +   +A   +D+  V +W +   F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGF 240

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  SQ+G L +WN  T +K +  K            P    VA G  D    + N+ 
Sbjct: 79  NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
Query: 212 YDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR- 264
              +      +       +G  ++  +  D +  L +G+      +W++   +  S+   
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 265 ---EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                H   ++SL   + N  + +S S D ++++W    T    R +R   GH      +
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSV 255
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +F+ +G+   +   D   RLF +    Q
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 523
            H  EV  VA    N  ++SAG   +IK+W+  G        ++  S W V C     + 
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 524 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              N +       A+V  D  +++++    ++   F+ H   +     S +GK++ + G 
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 578 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLA 614
           D  L IWD++      R+ DA     +I  ++ +P +  +A
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVA 271

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283
             V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337
Query: 284 MSASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
            S+  D  + +W            D  DG P LL    GH+A
Sbjct: 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283
             V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 339
Query: 284 MSASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
            S+  D  + +W            D  DG P LL    GH+A
Sbjct: 340 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574
           G  ++ I Y      LA+ A D +I +FD+   +++   EGH   I    FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 575 SGMDGSLRIWDV 586
           +  DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497
           FA  G   G I  +N   G   G + D S + N AH+G V G+      T + SA     
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 498 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 553
           IK+W+     ++    VG  +    + I++ +    L +++ +  I   +     + +  
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH   IT    S DGK L S+  +G +  WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 81  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 76  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	764
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.69
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.37
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.17
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.07
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.05
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	99.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.0
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
3ott_A	758	Two-component system sensor histidine kinase; beta	98.92
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
3ott_A	758	Two-component system sensor histidine kinase; beta	98.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.37
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.31
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.24
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.06
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.01
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.98
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.94
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.9
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.1
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.1
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.01
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.86
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.57
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.53
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.53
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.53
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.22
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.07
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.5
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.86
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.88
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.42
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	91.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.67
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.53
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.14
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.43
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.82
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	82.44

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-66  Score=577.86  Aligned_cols=562  Identities=21%  Similarity=0.321  Sum_probs=471.6

Q ss_pred             ccceeeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEe
Q 004270            5 EPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVK   81 (764)
Q Consensus         5 ~p~r~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~   81 (764)
                      +..|.-|+ ++.|.-....++++++++++.|++|+|||. +++++..+.+|...|++++|+||+.++++++   .|++||
T Consensus         8 e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A            8 ERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             EEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeEECCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            34455566 444433333489999999999999999995 6788888889999999999999988887753   399999


Q ss_pred             c-CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270           82 R-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (764)
Q Consensus        82 ~-~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~  158 (764)
                      . ++.+..+.+|...|.+++|  +|++|++++.|+.+++|+......     .....+...+....++|++  ..++.++
T Consensus        86 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~--~~~~~~~  158 (577)
T 2ymu_A           86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGVAFSPDG--QTIASAS  158 (577)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-----EEECCCSSCEEEEEECTTS--SCEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee-----eeccCCCCceeeeeeecCC--ccceecc
Confidence            6 4567779999999999997  799999999999999999765443     4445566777788899999  7899999


Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .++.+++|+. +.........|...|.+++++|++++|++++.||.|++||. +++.+..+..+ ...|.+++|+|+++ 
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~s~dg~-  234 (577)
T 2ymu_A          159 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQ-  234 (577)
T ss_dssp             TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSS-
T ss_pred             cccceecccc-ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecC-CCCEEEEEECCCCC-
Confidence            9999999995 55667778889999999999999999999999999999995 57777777665 78999999999999 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      +|++++.|+.|++||. +++.+..+. +|...|.+++|+|+++.+++++.|+.|++|+.+.     ..+..+.+|...|.
T Consensus       235 ~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-----~~~~~~~~h~~~v~  307 (577)
T 2ymu_A          235 TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVW  307 (577)
T ss_dssp             CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEE
T ss_pred             EEEEEeCCCEEEEEeC-CCCEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-----cEEEEEecCCCCeE
Confidence            8999999999999996 466677777 8999999999999999999999999999998543     46677789999999


Q ss_pred             eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +++|+|+++.+++++.|+++++|+...... ..+.                 ....++.++...+    +. ..++.+..
T Consensus       308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~-----------------~~~~~v~~~~~s~----~g-~~l~~~~~  364 (577)
T 2ymu_A          308 GVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLT-----------------GHSSSVWGVAFSP----DG-QTIASASD  364 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEE-EEEC-----------------CCSSCEEEEEECT----TS-SEEEEEET
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEe-----------------CCCCCEEEEEECC----CC-CEEEEEeC
Confidence            999999999999999999999999754322 1111                 0122344444332    23 34556678


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                      ++.+++|+......     .....|...+++++|+|+|+++++++.|+.|++|+. +++....+.        +|...|+
T Consensus       365 dg~v~~~~~~~~~~-----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~--------~~~~~v~  430 (577)
T 2ymu_A          365 DKTVKLWNRNGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVW  430 (577)
T ss_dssp             TSEEEEEETTCCEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE--------CCSSCEE
T ss_pred             CCEEEEEcCCCCEE-----EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec--------CCCCCeE
Confidence            89999999654322     223357789999999999999999999999999996 445555553        8999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT  557 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~  557 (764)
                      +++|+|++++|++++.|+.|++||.. ++.+..+.. ...+.+++|+|++++||+++.|+.|++||. ++++++.+.+|.
T Consensus       431 ~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~  508 (577)
T 2ymu_A          431 GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  508 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC
Confidence            99999999999999999999999975 455555554 489999999999999999999999999995 688999999999


Q ss_pred             CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          558 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       558 ~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ..|++++|+|||++|++++.|+.|++||. +++++..+..|. .|++++|+|||++|++++.|+ +|++||
T Consensus       509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~-~i~~Wd  577 (577)
T 2ymu_A          509 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK-TVKLWN  577 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEeC
Confidence            99999999999999999999999999995 688888888775 599999999999999999999 599997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3e-66  Score=577.41  Aligned_cols=562  Identities=14%  Similarity=0.186  Sum_probs=456.1

Q ss_pred             CCCcceEEe-cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEecC--c--eE
Q 004270           15 SSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKRA--H--QV   86 (764)
Q Consensus        15 ~~v~~~~~~-~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~--~--~~   86 (764)
                      .+.+.++.+ ++++++++++ ++++++||+.+++...++.+|...|++++|+|++.++|+|+   .|++||..  +  ..
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~   96 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   96 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence            334444433 7888888876 78999999999888888889999999999999999998864   49999963  2  24


Q ss_pred             EEecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC
Q 004270           87 ATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE  160 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d  160 (764)
                      ..+.+|.++|.+++|  +|++|++++.+    +.|++||.  ++.    ...+..|...+..+.|+|++. ..|++|+.|
T Consensus        97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~----~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D  169 (611)
T 1nr0_A           97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS----NGNLTGQARAMNSVDFKPSRP-FRIISGSDD  169 (611)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB----CBCCCCCSSCEEEEEECSSSS-CEEEEEETT
T ss_pred             EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC----cceecCCCCCceEEEECCCCC-eEEEEEeCC
Confidence            558999999999998  68999998865    36777773  444    456677888899999999983 369999999


Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec------cCCCCEEEEEEee
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSS  234 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~fs~  234 (764)
                      ++|++||..+++++..+.+|...|.+++|+|++++||+|+.|++|++||+.+++.+..+..      .|.+.|.+++|+|
T Consensus       170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999998888753      5689999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC
Q 004270          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                      +|+ +|++++.|++|++||+.+++.+..+..+  +...+..+.|  ++..+++++.|+.+++|+....    .....+.+
T Consensus       250 dg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~g  322 (611)
T 1nr0_A          250 DGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG----SIDQVRYG  322 (611)
T ss_dssp             TSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT----EEEEEECC
T ss_pred             CCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC----CcceEEcC
Confidence            999 9999999999999999999988877622  3345566666  6788999999999999987654    46677789


Q ss_pred             CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      |...|.+++|+|+|++|++++.|++|++||+.++.....+..                .....+.++....      ...
T Consensus       323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~----------------~h~~~v~~~~~s~------~~~  380 (611)
T 1nr0_A          323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----------------VHATMITGIKTTS------KGD  380 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----------------SCSSCEEEEEECT------TSC
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc----------------CCcceEEEEEECC------CCc
Confidence            999999999999999999999999999999987654433211                1123344444431      123


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                      +.....++.+++|+............ ..........++++|+|+.++++ .++.+.+|+.  +. ...+         .
T Consensus       381 l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~---------~  446 (611)
T 1nr0_A          381 LFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEV---------P  446 (611)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEE---------E
T ss_pred             EEEEEcCCceEEeecCCcccccccee-eeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeC--Cc-eeee---------e
Confidence            44566788999999876433211000 00112456789999999888877 5678999983  32 2222         4


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC-CeE
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRM  549 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~-~~~  549 (764)
                      |...+.+++|+|++++|++++.|++|++||+.++..  .....+...|.+++|+|++++|++++.|++|++||+.+ +++
T Consensus       447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~  526 (611)
T 1nr0_A          447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL  526 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence            778899999999999999999999999999987654  23445668999999999999999999999999999988 666


Q ss_pred             EEE--eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc-eE-EEEeeC--CceEEEEEcCCCCeEEEEEeCCCeE
Q 004270          550 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDVLATAHVDQNGV  623 (764)
Q Consensus       550 ~~~--~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-~~-~~~~~~--~~v~~l~~sp~g~~lat~~~d~~~i  623 (764)
                      +..  +.+|...|++++|+|||++|++++.|++|++||+.++. .+ ..+..|  ..|++++|+|++. |++++.|+ +|
T Consensus       527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~-~i  604 (611)
T 1nr0_A          527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS-NI  604 (611)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS-CE
T ss_pred             eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC-CE
Confidence            544  34599999999999999999999999999999999875 33 455555  4599999999998 99999999 69


Q ss_pred             EEEecc
Q 004270          624 YLWVNR  629 (764)
Q Consensus       624 ~lW~~~  629 (764)
                      ++|+++
T Consensus       605 ~lW~~~  610 (611)
T 1nr0_A          605 KFWNVP  610 (611)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.2e-61  Score=534.32  Aligned_cols=521  Identities=21%  Similarity=0.325  Sum_probs=441.5

Q ss_pred             EecCCCCcceEEEEEeCCeEEEEECC---eEEEEec-CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCC
Q 004270           50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGI  123 (764)
Q Consensus        50 ~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~-~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~  123 (764)
                      ..+.+|...|+|++|+||+.++|+++   .|++||. ++.+.++.+|.+.|++++|  +|++|++++.|++|+|||+. +
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~   88 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G   88 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred             eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-C
Confidence            44678999999999999999888754   3999996 4567779999999999997  79999999999999999964 4


Q ss_pred             cccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC
Q 004270          124 EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG  203 (764)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg  203 (764)
                      +.    +..+..+...+..++|+|++  +.|++++.|+.+++|+.. ........+|...|.++.++|++..+++++.++
T Consensus        89 ~~----~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  161 (577)
T 2ymu_A           89 QL----LQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK  161 (577)
T ss_dssp             CE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CE----EEEEECCCCCEEEEEECCCC--CEEEEEcCCCceeecccc-cceeeeccCCCCceeeeeeecCCccceeccccc
Confidence            44    56777888888999999999  899999999999999964 556677888999999999999999999999999


Q ss_pred             eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE
Q 004270          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (764)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  283 (764)
                      .+++|+... ........ +...|.+++|+|+++ ++++++.|+.|++||. +++.+..+. +|...|.+++|+|++++|
T Consensus       162 ~~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l  236 (577)
T 2ymu_A          162 TVKLWNRNG-QLLQTLTG-HSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTI  236 (577)
T ss_dssp             EEEEECTTS-CEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCE
T ss_pred             ceeccccce-eeeeeccC-CCcceeeeeecCCCC-EEEEEcCCCEEEEEeC-CCcEEEEEe-cCCCCEEEEEECCCCCEE
Confidence            999998653 44444444 478999999999999 8999999999999995 567777777 899999999999999999


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      ++++.|+.|++|+.+.     +.+..+.+|...|.+++|+|+++.+++++.|+.+++|+... +....+.          
T Consensus       237 ~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~----------  300 (577)
T 2ymu_A          237 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT----------  300 (577)
T ss_dssp             EEEETTSCEEEECTTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC----------
T ss_pred             EEEeCCCEEEEEeCCC-----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe----------
Confidence            9999999999997532     46777889999999999999999999999999999999642 2222111          


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                             ....++.++...+    +. ..+..+..++.+++|+......     .....+...+.+++++|+|+++++|+
T Consensus       301 -------~h~~~v~~~~~~~----~~-~~l~t~~~d~~i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          301 -------GHSSSVWGVAFSP----DG-QTIASASDDKTVKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             -------CCSSCEEEEEECT----TS-SEEEEEETTSCEEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -------cCCCCeEEEEECC----CC-CEEEEEeCCCeEEEEeCCCCee-----EEEeCCCCCEEEEEECCCCCEEEEEe
Confidence                   1123444444432    22 3455567789999999876543     22346778999999999999999999


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEE
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIV  522 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~  522 (764)
                      .+|.+++|+. ++.....+.        +|...|++++|+|++++|++++.|+.|++||. +++.+..+..+ ..|.+++
T Consensus       364 ~dg~v~~~~~-~~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~  433 (577)
T 2ymu_A          364 DDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA  433 (577)
T ss_dssp             TTSEEEEEET-TCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEE
T ss_pred             CCCEEEEEcC-CCCEEEEec--------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEE
Confidence            9999999996 455555553        89999999999999999999999999999996 45666666544 8999999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ce
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SI  601 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v  601 (764)
                      |+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||. +++++..+..|. .|
T Consensus       434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v  511 (577)
T 2ymu_A          434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  511 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred             ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence            9999999999999999999996 56788899999999999999999999999999999999995 688888888765 59


Q ss_pred             EEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          602 TALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       602 ~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ++++|+|||++||+++.|+ .|++|+..
T Consensus       512 ~~l~~s~dg~~l~s~~~dg-~v~lwd~~  538 (577)
T 2ymu_A          512 RGVAFSPDGQTIASASDDK-TVKLWNRN  538 (577)
T ss_dssp             EEEEECTTSSCEEEEETTS-EEEEECTT
T ss_pred             EEEEEcCCCCEEEEEECcC-EEEEEeCC
Confidence            9999999999999999998 69999953

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-61  Score=540.59  Aligned_cols=514  Identities=15%  Similarity=0.171  Sum_probs=420.4

Q ss_pred             ecCCeEEEEEEeCCeEEEEecCCC--eEEEecCCCCcceEEEEEeCCeEEEEECC-------eEEEEecCceEEEecccc
Q 004270           23 RLGTENFVTVSVGKAFHIYNCAKL--NLVLVGPQLPKKIRALASYRDYTFAAYGN-------HIAVVKRAHQVATWSRHS   93 (764)
Q Consensus        23 ~~~~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~I~~~~~~~~~~~~a~g~-------~i~vw~~~~~~~~~~~h~   93 (764)
                      .++++++++++.|++++|||+.++  .+.....+|.++|.+++|+|++.++++++       .|++|+.++.+..+.+|.
T Consensus        68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~  147 (611)
T 1nr0_A           68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA  147 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred             CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence            389999999999999999999753  34556678999999999999988776532       499999888888899999


Q ss_pred             cceEEEEE--eCC-EEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC
Q 004270           94 AKVNLLLL--FGE-HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (764)
Q Consensus        94 ~~v~~l~~--~g~-~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~  170 (764)
                      ..|.+++|  ++. .|++++.|++|++||..+++.    ...+..|...+..++|+|++  +.|++|+.|++|++||+.+
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~----~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----eeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCC
Confidence            99999998  454 699999999999999888766    66778888999999999999  8999999999999999999


Q ss_pred             CeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC--CCCEEEEEEeeCCCCEEE
Q 004270          171 KKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLA  241 (764)
Q Consensus       171 ~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~l~  241 (764)
                      ++.+..+.       +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+..+.  ...+..+.|  ++. .++
T Consensus       222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~  298 (611)
T 1nr0_A          222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ-ALV  298 (611)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSS-CEE
T ss_pred             CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCC-EEE
Confidence            99999884       799999999999999999999999999999999999988887532  235566666  566 789


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec-cCCCCCCeeE
Q 004270          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCI  320 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~i  320 (764)
                      +++.||.+++||...++....+. +|...|.+++|+|++++|++++.|++|++||+...    .....+ .+|...|.++
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----~~~~~~~~~h~~~v~~~  373 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGI  373 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEE
T ss_pred             EEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeeecccCCcceEEEE
Confidence            99999999999999998777777 99999999999999999999999999999998765    233333 5799999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|++++ .+++++.|+++++|++............             ..+. .....+..    ..+...++..  .+.
T Consensus       374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~----s~dg~~~~~~--~~~  432 (611)
T 1nr0_A          374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVA-------------NKLS-SQPLGLAV----SADGDIAVAA--CYK  432 (611)
T ss_dssp             EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCE-------------EECS-SCEEEEEE----CTTSSCEEEE--ESS
T ss_pred             EECCCC-cEEEEEcCCceEEeecCCccccccceee-------------eecC-CCCcEEEE----eCCCcEEEEE--eCc
Confidence            999765 6889999999999998764332110000             0000 01111111    1233333333  346


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                      .+++|+...  ..  .+    .+...+.+++|+|+|+++++|+.||.|++|++.++.......       .+|...|+++
T Consensus       433 ~v~~~~~~~--~~--~~----~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-------~~h~~~v~~v  497 (611)
T 1nr0_A          433 HIAIYSHGK--LT--EV----PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-------IVHPAEITSV  497 (611)
T ss_dssp             EEEEEETTE--EE--EE----ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-------EECSSCEEEE
T ss_pred             eEEEEeCCc--ee--ee----ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-------cCCCCceEEE
Confidence            788887332  11  11    145779999999999999999999999999998764321111       2799999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCC-CCeeee--Ee-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe-EE-EEee
Q 004270          481 ACDSTNTLMISAGYHGDIKVWDFKG-RDLKSR--WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MV-RKFE  554 (764)
Q Consensus       481 ~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~--~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~-~~-~~~~  554 (764)
                      +|+|++++|++++.|++|++|++.+ +++...  +. +...|.+++|+||+++||+|+.|++|++||+.++. .+ ..+.
T Consensus       498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~  577 (611)
T 1nr0_A          498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG  577 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence            9999999999999999999999987 555443  33 55899999999999999999999999999998765 33 6778


Q ss_pred             cC-CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          555 GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       555 ~h-~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      +| ...|++++|+||++ |++++.|++|++|+++
T Consensus       578 ~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          578 AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            99 89999999999998 9999999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-59  Score=528.35  Aligned_cols=534  Identities=14%  Similarity=0.139  Sum_probs=462.0

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCC----eEEEecCCCCcc-eEEEEEeC--CeEEEEECC---eEEEEecC----------
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKL----NLVLVGPQLPKK-IRALASYR--DYTFAAYGN---HIAVVKRA----------   83 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~-I~~~~~~~--~~~~~a~g~---~i~vw~~~----------   83 (764)
                      ++++++++++ ++.+++||+.++    +.+....+|... |++++|+|  ++.+++++.   .|++|+..          
T Consensus        28 pdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~  106 (615)
T 1pgu_A           28 PTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV  106 (615)
T ss_dssp             TTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE
T ss_pred             CCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc
Confidence            8888888888 899999999999    888888899999 99999999  988887753   49999973          


Q ss_pred             ceEEEecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE
Q 004270           84 HQVATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG  157 (764)
Q Consensus        84 ~~~~~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~  157 (764)
                      +.+..+.+|...|.++++  +|++|++++.+    +.|.+||  .++.    +..+..+...+..+.|+|++. ..++++
T Consensus       107 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~-~~l~~~  179 (615)
T 1pgu_A          107 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS----LGEVSGHSQRINACHLKQSRP-MRSMTV  179 (615)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE----EEECCSCSSCEEEEEECSSSS-CEEEEE
T ss_pred             cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc----ceeeecCCccEEEEEECCCCC-cEEEEE
Confidence            335558899999999997  78999999987    6788888  3444    566777888889999999982 279999


Q ss_pred             eCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEEEEec---cCCCCEEEE
Q 004270          158 SQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH---SMRGAVTAL  230 (764)
Q Consensus       158 ~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~l  230 (764)
                      +.||.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+..   .|...|.++
T Consensus       180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~  259 (615)
T 1pgu_A          180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL  259 (615)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred             eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence            9999999999999999999999999   9999999999 99999999999999999999999998843   568999999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc----ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (764)
                      +|+ ++. +|++++.||.|++||+++++.+..+. .+    ...+.++.|. ++.++++++.|+.|++|++...    ..
T Consensus       260 ~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~----~~  331 (615)
T 1pgu_A          260 SWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD----EV  331 (615)
T ss_dssp             EES-SSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE----EE
T ss_pred             EEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC----cE
Confidence            999 888 99999999999999999999888887 44    4678888886 8889999999999999998764    67


Q ss_pred             eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          307 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                      +..+.+|...|.+++| |+   +++++.||.+++|++..   ..                   .....++.++...    
T Consensus       332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~-------------------~~~~~~v~~~~~~----  381 (615)
T 1pgu_A          332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH-------------------QDHSNLIVSLDNS----  381 (615)
T ss_dssp             EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE-------------------CCCCSCEEEEECC----
T ss_pred             EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchh---hc-------------------CcccCceEEEEEC----
Confidence            7788899999999999 88   99999999999999760   00                   1122345555541    


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                       + ...+..+..++.+++|++......           ..+.+++++|+|.+++++ .++.+.+|++.+++....+    
T Consensus       382 -~-~~~l~~~~~d~~i~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----  443 (615)
T 1pgu_A          382 -K-AQEYSSISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV----  443 (615)
T ss_dssp             -S-TTCCEEEETTTEEEETTEEEEECS-----------SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE----
T ss_pred             -C-CcEEEEEeCCCCEEEEEcccCccc-----------CCceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeec----
Confidence             1 235666778899999998876542           267899999999888887 8899999999888887766    


Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCee-eeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~-~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                           .|...+.+++++  ++++++++. |+.|++||+.+++.. ..+ .+...|.+++|+|++++|++++.|+.|++||
T Consensus       444 -----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  516 (615)
T 1pgu_A          444 -----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD  516 (615)
T ss_dssp             -----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -----ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence                 578899999999  889999999 999999999987764 333 3448999999999999999999999999999


Q ss_pred             ccCCeEEEEeec-CCCCeeEEEEcC----------CCcEEEEEeCCCcEEEEEcCcc-ceEEEEeeCC-ceEEEEEcCCC
Q 004270          544 VVALRMVRKFEG-HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SITALSLSPNM  610 (764)
Q Consensus       544 ~~~~~~~~~~~~-h~~~i~~l~~s~----------dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~-~v~~l~~sp~g  610 (764)
                      +.+++.+..+.+ |...|++++|+|          ++++|++++.||.|++||+.++ +++..+..|. .|++++|+|++
T Consensus       517 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~  596 (615)
T 1pgu_A          517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS  596 (615)
T ss_dssp             TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred             CCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence            999999999998 999999999999          9999999999999999999998 7888887665 59999999999


Q ss_pred             CeEEEEEeCCCeEEEEeccc
Q 004270          611 DVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       611 ~~lat~~~d~~~i~lW~~~~  630 (764)
                      . |++++.|+ .|++|+++.
T Consensus       597 ~-l~s~~~d~-~v~iw~~~~  614 (615)
T 1pgu_A          597 T-LVSSGADA-CIKRWNVVL  614 (615)
T ss_dssp             E-EEEEETTS-CEEEEEEC-
T ss_pred             C-eEEecCCc-eEEEEeeec
Confidence            9 99999999 599999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.3e-60  Score=572.95  Aligned_cols=559  Identities=17%  Similarity=0.230  Sum_probs=479.1

Q ss_pred             ecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceE
Q 004270           23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVN   97 (764)
Q Consensus        23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~   97 (764)
                      .++++++++++.|++|++||+.+++.+....+|...|.+++|+|++.++++++   .|++||.  ++.+..+.+|...|.
T Consensus       624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~  703 (1249)
T 3sfz_A          624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN  703 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence            38899999999999999999999999999999999999999999987777643   4999996  566778999999999


Q ss_pred             EEEE----eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270           98 LLLL----FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (764)
Q Consensus        98 ~l~~----~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~  173 (764)
                      ++.+    ++..+++++.||.|++||+.+++.    ...+..|...+..++|+|++  +.+++++.||.|++||+.+++.
T Consensus       704 ~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             EEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSST--TEEEEEESSSEEEEEEGGGTEE
T ss_pred             EEEEecCCCceEEEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCC--CEEEEEECCCeEEEEeCCCCcc
Confidence            9998    356899999999999999999887    67777888889999999999  8999999999999999999988


Q ss_pred             EEEEcC-------------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270          174 LYEFKG-------------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       174 ~~~~~~-------------h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l  240 (764)
                      ...+..             +...+.+++|+|+++.+++++ ++.+.+||+.++..+..+...|...|.+++|+|++. ++
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l  855 (1249)
T 3sfz_A          778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LA  855 (1249)
T ss_dssp             EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EE
T ss_pred             cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EE
Confidence            877643             234788999999999999987 689999999999999999877789999999999999 99


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc----------------
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----------------  304 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----------------  304 (764)
                      ++++.+|.|++||+.++.....+. +|.+.|.+++|+|+++.|++++.|+.|++|++.......                
T Consensus       856 ~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          856 VIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             EEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            999999999999999999998888 999999999999999999999999999999975311000                


Q ss_pred             ------------eee-----EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          305 ------------RLL-----RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       305 ------------~~~-----~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                                  ...     .....+...+.+++|+|+++++++++.+|.+++|++.++.....+..             
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~------------- 1001 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG------------- 1001 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-------------
T ss_pred             cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-------------
Confidence                        000     00012356789999999999999999999999999987655443321             


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  447 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~  447 (764)
                          ...++.++...+    +. ..+..+..++.+++|++.+....     ....+...+.++++++++ .+++++.+|.
T Consensus      1002 ----h~~~v~~l~~s~----dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 1066 (1249)
T 3sfz_A         1002 ----HKKAVRHIQFTA----DG-KTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQDS-RLLSWSFDGT 1066 (1249)
T ss_dssp             ----CSSCCCCEEECS----SS-SCEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEEEEECSSS-EEEEEESSSE
T ss_pred             ----CCCceEEEEECC----CC-CEEEEEcCCCEEEEEECCCCceE-----EEecCCCcEEEEEEcCCC-cEEEEECCCc
Confidence                122344444332    23 34555667899999999876542     233677899999999965 5788899999


Q ss_pred             EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeec
Q 004270          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV  526 (764)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~  526 (764)
                      |++||+.++.....+.        +|.+.|.+++|+|+++++++++.||.|++||+.+++.+..+..+ ..|++++|+|+
T Consensus      1067 v~vwd~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A         1067 VKVWNVITGRIERDFT--------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp             EEEEETTTTCCCEEEE--------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred             EEEEECCCCceeEEEc--------ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCC
Confidence            9999999999888775        89999999999999999999999999999999999988888765 78999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeEEEEe---------ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270          527 NGLLATVADDLVIRLFDVVALRMVRKF---------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV  597 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~~~~~---------~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  597 (764)
                      +++|++++.||.|++||+.+++.+..+         .+|.+.|++++|+|||++|++++  |.|++||+.+++.+..+..
T Consensus      1139 g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~ 1216 (1249)
T 3sfz_A         1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216 (1249)
T ss_dssp             SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec
Confidence            999999999999999999999877665         67999999999999999999886  8999999999999988875


Q ss_pred             CC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          598 DV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       598 ~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +. .|++++|+|||.+|++++.|+ .|++|++.
T Consensus      1217 ~~~~i~~~~~s~dg~~l~~~~~dg-~v~vw~l~ 1248 (1249)
T 3sfz_A         1217 NGTNLKKIHVSPDFRTYVTVDNLG-ILYILQVL 1248 (1249)
T ss_dssp             SSCCCCCCEECSSSCCEEEECTTC-CEEEECCC
T ss_pred             cCCcccEEEECCCCCEEEEecCCc-EEEEEeec
Confidence            55 599999999999999999999 59999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-57  Score=553.65  Aligned_cols=530  Identities=17%  Similarity=0.219  Sum_probs=454.2

Q ss_pred             EecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccC
Q 004270           50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKG  122 (764)
Q Consensus        50 ~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~  122 (764)
                      ....+|.+.|++++|+|++.++++|+   .|++|+.  ++.+..+.+|...|.++++  +|++|++++.||+|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            34568999999999999998888754   3999996  5567779999999999998  689999999999999999999


Q ss_pred             CcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC
Q 004270          123 IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD  202 (764)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d  202 (764)
                      ++.    +..+..+...+..+.|+|++....+++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|
T Consensus       689 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          689 GKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             CCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             Cce----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            887    7788888888999999997654789999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEccCCceEEEEecc------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC
Q 004270          203 GKIHVHNVRYDEELVTFTHS------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA  270 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~  270 (764)
                      |.|++||+.+++....+...            ....+.+++|+|+|+ .+++++ ++.+.+||+.++.....+..+|...
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~  842 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST  842 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETTTCCEEEEEECSSSSC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCceeEEcCCCCCc
Confidence            99999999999887776532            123788999999999 777776 7899999999999888888789999


Q ss_pred             eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       271 v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      |.+++|+|+++++++++.|+.|++|+++..    ..+..+.+|...|.+++|+|+++++++++.|+.+++|++.......
T Consensus       843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~  918 (1249)
T 3sfz_A          843 IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS  918 (1249)
T ss_dssp             CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence            999999999999999999999999998765    6777888999999999999999999999999999999986543222


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      .....                   .....     ........+........+.++.........       .....+.++
T Consensus       919 ~~~~~-------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~  967 (1249)
T 3sfz_A          919 AIVLK-------------------QEIDV-----VFQENETMVLAVDNIRGLQLIAGKTGQIDY-------LPEAQVSCC  967 (1249)
T ss_dssp             SSSEE-------------------EEEEE-----EEETTEEEEEEEESSSSEEEEEESSCCEEE-------ECCSCEEEE
T ss_pred             eeccc-------------------ceeeE-----EEcCCCcEEEEecCCcceEEEecCcceEEE-------cccCcEEEE
Confidence            21100                   00000     000111223333444555555544433211       123679999


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      +++|+|+++++|+.+|.|.+|++.++.....+.        +|...|++++|+|+++++++++.||.|++||+.+++...
T Consensus       968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--------~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--------GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             EECTTSSEEEEEETTSCCEEEETTTTSCEEECC--------CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence            999999999999999999999999998877664        899999999999999999999999999999999998887


Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                      ...+...+.++++++++ .+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++++.|++|++||+.+++
T Consensus      1040 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A         1040 LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp             CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred             EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence            77777999999999955 57888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          591 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       591 ~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      ++..+..|.. |++++|+|+|++||+++.|+ .|++|++..
T Consensus      1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A         1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp             CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred             eeeeeccCCCcEEEEEECCCCCEEEEEeCCC-EEEEEECCC
Confidence            9988887654 99999999999999999999 599999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.9e-56  Score=497.49  Aligned_cols=496  Identities=15%  Similarity=0.185  Sum_probs=428.9

Q ss_pred             ec--CCeEEEEEEeCCeEEEEecCCC--------eEEEecCCCCcceEEEEEeCCeEEEEEC-------CeEEEEecCce
Q 004270           23 RL--GTENFVTVSVGKAFHIYNCAKL--------NLVLVGPQLPKKIRALASYRDYTFAAYG-------NHIAVVKRAHQ   85 (764)
Q Consensus        23 ~~--~~~~~~~~~~~~~i~iwd~~~~--------~~~~~~~~~~~~I~~~~~~~~~~~~a~g-------~~i~vw~~~~~   85 (764)
                      .+  +++++++++.|+++++||+.++        .++.....|...|.+++|+|++.+++++       ..|++|+.++.
T Consensus        73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~  152 (615)
T 1pgu_A           73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS  152 (615)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred             CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc
Confidence            37  8899999999999999999854        6777777899999999999998776653       25999998888


Q ss_pred             EEEecccccceEEEEE--eCC-EEEEEecCCcEEEEEccCCcccccceeeEecCCc---cccEEEEeCC-CCCCEEEEEe
Q 004270           86 VATWSRHSAKVNLLLL--FGE-HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK---FTPTCIMHPD-TYLNKVIVGS  158 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~--~g~-~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~l~~~~  158 (764)
                      +..+.+|...|.++.+  +++ .|++++.||.|++||+.+++.    +..+..+..   .+..++|+|+ +  +.+++++
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~  226 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGSFVRDVEFSPDSG--EFVITVG  226 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTTCCEEEEEECSTTC--CEEEEEE
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce----eeeecccCCCCceEEEEEECCCCC--CEEEEEe
Confidence            9999999999999998  455 899999999999999988877    667777777   7888999999 8  7999999


Q ss_pred             CCCcEEEEeCCCCeEEEEE-c---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc---CCCCEEEEE
Q 004270          159 QEGSLQLWNISTKKKLYEF-K---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS---MRGAVTALA  231 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~-~---~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~l~  231 (764)
                      .||.|++||+.+++.+..+ .   .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+   ....+.++.
T Consensus       227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  305 (615)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence            9999999999999999999 6   899999999999 9999999999999999999999999888764   236788999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS  311 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  311 (764)
                      |. ++. ++++++.+|.|++||+.+++.+..+. +|...|.+++| |+   +++++.|+.|++|++.       .+.  .
T Consensus       306 ~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------~~~--~  369 (615)
T 1pgu_A          306 AT-GNG-RIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NP---LISGSYDGRIMEWSSS-------SMH--Q  369 (615)
T ss_dssp             EE-ETT-EEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TT---TEEEETTSCEEETTTT-------EEE--C
T ss_pred             eC-CCC-eEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------hhc--C
Confidence            86 666 89999999999999999999988888 89999999999 88   9999999999999765       233  7


Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      +|...|.+++| +++..+++++.|+.+++|++.......                        +...+..    ..+.. 
T Consensus       370 ~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~------------------------~~~~~~~----s~~~~-  419 (615)
T 1pgu_A          370 DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS------------------------QPKVASA----NNDGF-  419 (615)
T ss_dssp             CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS------------------------CEEEEEE----CSSSE-
T ss_pred             cccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC------------------------CceEEEE----cCCCC-
Confidence            89999999999 667899999999999999997754332                        1112222    12222 


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCccc-ceecCccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISR-GSYLDMSERS  469 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~-~~~~~~~~~~  469 (764)
                      ++..+ ....+.+|+..........     .+...+.+++++  ++++++++. +|.|++|++.++... ..+       
T Consensus       420 ~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~-------  484 (615)
T 1pgu_A          420 TAVLT-NDDDLLILQSFTGDIIKSV-----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK-------  484 (615)
T ss_dssp             EEEEE-TTSEEEEEETTTCCEEEEE-----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS-------
T ss_pred             EEEEe-CCCceEEEeccCCceeeec-----ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc-------
Confidence            22233 7888999998665442222     145789999999  999999999 999999999987654 222       


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEEEEee----------cCCEEEEEeCCC
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHR----------VNGLLATVADDL  537 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~~~s~----------~~~~la~~~~d~  537 (764)
                       ..|...|++++|+|++++|++++.||.|++||+.+++.+..+.  +...|++++|+|          ++++||+++.|+
T Consensus       485 -~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg  563 (615)
T 1pgu_A          485 -TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT  563 (615)
T ss_dssp             -SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred             -CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence             4899999999999999999999999999999999999988877  558999999999          999999999999


Q ss_pred             eEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          538 VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       538 ~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      .|++||+.++ +.+..+.+|...|++++|+||++ |++++.||+|++|++..
T Consensus       564 ~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999999998 88999999999999999999999 99999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-54  Score=500.43  Aligned_cols=542  Identities=11%  Similarity=0.075  Sum_probs=410.3

Q ss_pred             ecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC---CeEEEEec--CceEEEecccccceE
Q 004270           23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG---NHIAVVKR--AHQVATWSRHSAKVN   97 (764)
Q Consensus        23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g---~~i~vw~~--~~~~~~~~~h~~~v~   97 (764)
                      .++++++++++.|++|+|||..+.+.+... .|..+|.+++|+| +.+++++   +.|++||.  ++.+..+. |...|+
T Consensus        26 spdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~  102 (902)
T 2oaj_A           26 DFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKIT  102 (902)
T ss_dssp             ETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEE
Confidence            388999999999999999999998887765 4788999999999 5454443   34999996  44566665 778999


Q ss_pred             EEEE--eCCEEEEEecCCcEEEEEccCCcccccce-------eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270           98 LLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV-------GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (764)
Q Consensus        98 ~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~  168 (764)
                      ++++  ++++|++++.||+|++||+.+++.....+       .....|...+..++|+|++. +.+++|+.||.| +||+
T Consensus       103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEEEEECSSCEE-EEET
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEEEEEeCCCcE-EEEC
Confidence            9997  79999999999999999999876521001       22345677889999999642 589999999999 9999


Q ss_pred             CCCeEEEEEcCC------------------CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-----c---
Q 004270          169 STKKKLYEFKGW------------------GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-----S---  222 (764)
Q Consensus       169 ~~~~~~~~~~~h------------------~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-----~---  222 (764)
                      ++++.+..+..|                  ...|.+++|+|+|++||+|+.||.|++||+++++.+.....     +   
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~  260 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ  260 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence            999999998876                  57899999999999999999999999999999987764221     1   


Q ss_pred             ---------CCCCEEEEEEee----CCCCEEEEEeCC-----CcEEEEECC------------------Cceeeeeeecc
Q 004270          223 ---------MRGAVTALAFSS----DGQPLLASGASS-----GVISIWNLE------------------KRRLQSVIREA  266 (764)
Q Consensus       223 ---------~~~~v~~l~fs~----d~~~~l~sg~~d-----g~i~iwd~~------------------~~~~~~~~~~~  266 (764)
                               +...|++++|++    ++..+|++|+.+     +.+.+|++.                  +.+....+...
T Consensus       261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  340 (902)
T 2oaj_A          261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP  340 (902)
T ss_dssp             TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred             CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence                     245799999965    433478888765     379999852                  22223333324


Q ss_pred             cccCeeEEEEec----------CCCEEEEEcCCCcEEEEEecCCCCCce-------------------------------
Q 004270          267 HDNAIISLHFFA----------NEPVLMSASADNSIKMWIFDTTDGDPR-------------------------------  305 (764)
Q Consensus       267 h~~~v~~l~~~~----------~~~~l~s~~~d~~i~vw~~~~~~~~~~-------------------------------  305 (764)
                      |.+.|.++.+.+          +...+++++.|+.|++|++..+.....                               
T Consensus       341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~  420 (902)
T 2oaj_A          341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA  420 (902)
T ss_dssp             SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred             CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence            677888998866          234788889999999999853310000                               


Q ss_pred             ------eeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270          306 ------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (764)
Q Consensus       306 ------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (764)
                            ....+.+|...+.+++|+|+++.|++|+.|++|++||+..+..... .                      +...
T Consensus       421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~----------------------~~~~  477 (902)
T 2oaj_A          421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-A----------------------SFEV  477 (902)
T ss_dssp             HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-B----------------------CEEE
T ss_pred             HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC-c----------------------eEEe
Confidence                  0012356666777778889999999999999999999876632100 0                      0000


Q ss_pred             eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                ++.      .  ....+|...|.+++|+|+|++|++|+.||+|++|++.+++..
T Consensus       478 --------------------------~l~------~--~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~  523 (902)
T 2oaj_A          478 --------------------------NLS------R--TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY  523 (902)
T ss_dssp             --------------------------EHH------H--HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred             --------------------------ech------h--hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence                                      000      0  001256689999999999999999999999999999877321


Q ss_pred             ce-----------------ec--------------------CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          460 GS-----------------YL--------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       460 ~~-----------------~~--------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      ..                 +.                    ......+.+|.+.|++++|+|+| +||+|+.|++|++||
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence            00                 00                    00011235799999999999999 999999999999999


Q ss_pred             CCCCCeeee-----E--ecCcceEEEEEe-----ecC---CEEEEEeCCCeEEEEEc---cCCeEEEEeecCC-----CC
Q 004270          503 FKGRDLKSR-----W--EVGCSLVKIVYH-----RVN---GLLATVADDLVIRLFDV---VALRMVRKFEGHT-----DR  559 (764)
Q Consensus       503 ~~~~~~~~~-----~--~~~~~i~~~~~s-----~~~---~~la~~~~d~~i~v~d~---~~~~~~~~~~~h~-----~~  559 (764)
                      +.++..+..     +  .+...|++++|+     |||   .+|++|+.|++|++||+   .+|+....+.+|.     ++
T Consensus       603 ~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~  682 (902)
T 2oaj_A          603 RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGP  682 (902)
T ss_dssp             TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCC
T ss_pred             CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCc
Confidence            988776542     2  233779999999     875   89999999999999999   8899988888874     77


Q ss_pred             eeEEE-Ec----------------------CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEE---E------E
Q 004270          560 ITDFC-FS----------------------EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITAL---S------L  606 (764)
Q Consensus       560 i~~l~-~s----------------------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l---~------~  606 (764)
                      |..++ |+                      ++|..|+++  +..||||++.++++......+. .+.++   .      |
T Consensus       683 v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~  760 (902)
T 2oaj_A          683 IHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNND  760 (902)
T ss_dssp             CCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSC
T ss_pred             eEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEecccccc
Confidence            88777 66                      566555544  7789999999999987764333 25555   5      7


Q ss_pred             cCCCCeEEEEEeCCCeEEEEeccc
Q 004270          607 SPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       607 sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      +++|..|++.+.|+ .|++|++..
T Consensus       761 ~~~~~~l~~~~~~g-~i~~~s~p~  783 (902)
T 2oaj_A          761 RKNLTVIITLEING-HLRVFTIPD  783 (902)
T ss_dssp             EEEEEEEEEEETTS-EEEEEETTT
T ss_pred             ccCceEEEEEeCCC-cEEEEECcc
Confidence            89999999999999 699999854

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-54  Score=499.14  Aligned_cols=537  Identities=12%  Similarity=0.087  Sum_probs=400.4

Q ss_pred             CCCcceEEEEEeCCeEEEEECC---eEEEEecCceEE-EecccccceEEEEEe-CCEEEEEecCCcEEEEEccCCccccc
Q 004270           54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQVA-TWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        54 ~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~~~~~-~~~~h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      +|+..|++++|+|++.++|+|.   .|++|+...... ....|...|.+++|. |++|++++.|++|++||+.+++.   
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~---   91 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV---   91 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE---
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE---
Confidence            6899999999999998888865   499999754433 345688999999985 77899999999999999998876   


Q ss_pred             ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEE-----------EEEcCCCCCeEEEEEcCC-CCEE
Q 004270          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-----------YEFKGWGSSISSCVSSPA-LDVV  196 (764)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~h~~~i~~~~~sp~-~~~l  196 (764)
                       +..+. +...+..++|+|++  +++++|+.||.|++||++++++.           ..+.+|.+.|.+++|+|+ +..|
T Consensus        92 -~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           92 -LTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             -EEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             -EEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence             55555 45667888899999  89999999999999999998764           234679999999999996 5789


Q ss_pred             EEEEcCCeEEEEEccCCceEEEEecc-----------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270          197 AVGCSDGKIHVHNVRYDEELVTFTHS-----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (764)
Q Consensus       197 a~g~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~  259 (764)
                      ++|+.||.| +||+++++.+..+..+                 |...|.+++|+|+|. +|++|+.||.|++||++++++
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence            999999999 9999999988887643                 246799999999999 999999999999999999887


Q ss_pred             eee--ee--cc-------------cccCeeEEEEec----CC-CEEEEEcCC-----CcEEEEEecCCCC----------
Q 004270          260 QSV--IR--EA-------------HDNAIISLHFFA----NE-PVLMSASAD-----NSIKMWIFDTTDG----------  302 (764)
Q Consensus       260 ~~~--~~--~~-------------h~~~v~~l~~~~----~~-~~l~s~~~d-----~~i~vw~~~~~~~----------  302 (764)
                      +..  +.  ..             |...|.+++|++    ++ .+|++++.|     +.+++|++.....          
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            653  21  01             345799999964    33 467777665     3788998532100          


Q ss_pred             ----CceeeEecc-CCCCCCeeEEEec----------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          303 ----DPRLLRFRS-GHSAPPLCIRFYA----------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       303 ----~~~~~~~~~-~h~~~v~~i~~~~----------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                          .+...+.+. +|...+..+.+.+          +...+++++.|+.+++|++.++..........          .
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~----------~  395 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP----------Q  395 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC----------G
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC----------C
Confidence                001122222 4667888888755          34578999999999999986543221110000          0


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  447 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~  447 (764)
                      ......+++.++.........|.......                 ........+|...+.+++|+|+|+++++|+.||+
T Consensus       396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~-----------------~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt  458 (902)
T 2oaj_A          396 NLSWLRPLATTSMAASVPNKLWLGALSAA-----------------QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS  458 (902)
T ss_dssp             GGTTBTTBEEEEEEEEEEHHHHHHHHHTT-----------------BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE
T ss_pred             cccccCCCeeEEEEEEcCHHHHHHHHhcc-----------------cCCCCcccCCcCCCCcccccccCcEEEEecCCCc
Confidence            01112245555554433333333221100                 0001233456677788899999999999999999


Q ss_pred             EEEEECcCCcccc--eecCc-cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------
Q 004270          448 IERFNLQSGISRG--SYLDM-SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-----------------  507 (764)
Q Consensus       448 i~i~~~~~~~~~~--~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------------  507 (764)
                      |++||+.++....  .+... ......+|...|.+++|+|++++||+|+.||+|++||+.+++                 
T Consensus       459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred             EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence            9999999885321  11000 000012788999999999999999999999999999998663                 


Q ss_pred             ----------------------------eeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE-----Ee
Q 004270          508 ----------------------------LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-----KF  553 (764)
Q Consensus       508 ----------------------------~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~-----~~  553 (764)
                                                  ++..+. +...|++++||||| +||+|+.|++|++||++++..+.     .+
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~  617 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREI  617 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGT
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHh
Confidence                                        244454 44899999999999 99999999999999999887764     23


Q ss_pred             e-cCCCCeeEEEEc-----CCC---cEEEEEeCCCcEEEEEc---CccceEEEEeeC------CceEEEE-Ec-------
Q 004270          554 E-GHTDRITDFCFS-----EDG---KWLLSSGMDGSLRIWDV---ILARQIDAIHVD------VSITALS-LS-------  607 (764)
Q Consensus       554 ~-~h~~~i~~l~~s-----~dg---~~l~s~s~dg~i~iwd~---~~~~~~~~~~~~------~~v~~l~-~s-------  607 (764)
                      . +|.+.|++++|+     |||   ++|++++.|++|++||+   .+|+....+..+      .+|.+++ |+       
T Consensus       618 ~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~  697 (902)
T 2oaj_A          618 SGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSC  697 (902)
T ss_dssp             CSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBC
T ss_pred             ccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcc
Confidence            3 899999999999     886   89999999999999999   889888887665      3577776 65       


Q ss_pred             ---------------CCCCeEEEEEeCCCeEEEEeccc
Q 004270          608 ---------------PNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       608 ---------------p~g~~lat~~~d~~~i~lW~~~~  630 (764)
                                     ++|..||++  +. .|+||++.+
T Consensus       698 ~a~~~~~~~l~~~~~~~~~~l~~~--~~-~ir~~~~~~  732 (902)
T 2oaj_A          698 LATIPKMQNLSKGLCIPGIVLITG--FD-DIRLITLGK  732 (902)
T ss_dssp             BCBHHHHHGGGGTCCCCEEEEEEC--SS-EEEEECTTC
T ss_pred             cCCHHHHhccCCCCCCCeEEEEEe--cc-ceEEEeCcc
Confidence                           556555554  55 699999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-48  Score=452.67  Aligned_cols=465  Identities=17%  Similarity=0.205  Sum_probs=372.8

Q ss_pred             EEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270           86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      ...+.+|.+.|+++++  +|++|++++.||.|++||+.+++.    +..+..+...+..+.|+|++  ++|++|+.||.|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i   79 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE----VRSIQVTETPVRAGKFIARK--NWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEEEGGG--TEEEEEETTSEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce----EEEEecCCCcEEEEEEeCCC--CEEEEEeCCCeE
Confidence            4568999999999997  799999999999999999999887    77888888889999999999  899999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee-CCCCEEEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS-DGQPLLAS  242 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~~l~s  242 (764)
                      ++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++.........|...|.+++|+| ++. ++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~  158 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFAS  158 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEE
Confidence            99999999999999999999999999999999999999999999999988444433344588999999999 677 8999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      ++.||.|++||+.+++....+...|...+.+++|+|  +++++++++.|+.|++|++...    ..+..+.+|...|.++
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEE
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEE
Confidence            999999999999999888888755668999999999  9999999999999999998765    5677778999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|+|+++++++++.||.|++||+.+......+...                 ..++.++...    .+...++.+...+.
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~----~~~~~~~~~~~~~~  293 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----------------LERSWCIATH----PTGRKNYIASGFDN  293 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-----------------SSSEEEEEEC----TTCGGGEEEEEETT
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----------------CCcEEEEEEc----cCCCceEEEEEeCC
Confidence            99999999999999999999998876554443221                 1123333222    12223322223344


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc---EEE------EECcCCcccceecCccccccc
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IER------FNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~---i~i------~~~~~~~~~~~~~~~~~~~~~  471 (764)
                      .+.+|+...                ....+.++|+|..+++++.+..   +..      |++..+......    .....
T Consensus       294 ~~~~~~~~~----------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  353 (814)
T 3mkq_A          294 GFTVLSLGN----------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ----TKELG  353 (814)
T ss_dssp             EEEEEECSC----------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC----CEEEC
T ss_pred             CEEEEEcCC----------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee----eecCC
Confidence            455565432                1224566777777776655441   111      111122111110    01113


Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~  551 (764)
                      .+...+.+++|+|+|+++++++ |+.+.+|++......    ....+.+++|+|+++++|+++.++.|++|+        
T Consensus       354 ~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------  420 (814)
T 3mkq_A          354 SVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSNSYALIDETGQIKYYK--------  420 (814)
T ss_dssp             CCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSSCEEEECTTCCEEEEE--------
T ss_pred             CCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------
Confidence            5667789999999999999988 899999997654332    236788999999999999999999999995        


Q ss_pred             EeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270          552 KFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~  617 (764)
                      .+.+|...+.+++|+|||   ++|++++.|+.|++||+.+++.+..+..+..  .++|+|||++|++++
T Consensus       421 ~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~la~~~  487 (814)
T 3mkq_A          421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELVMIVN  487 (814)
T ss_dssp             TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSSEEEEEE
T ss_pred             CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCCEEEEEE
Confidence            346788899999999998   6889999999999999999999999887665  999999999999994

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-47  Score=444.30  Aligned_cols=470  Identities=15%  Similarity=0.192  Sum_probs=378.7

Q ss_pred             eEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEE
Q 004270           47 NLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWA  119 (764)
Q Consensus        47 ~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd  119 (764)
                      ++.....+|.+.|++++|+|++.+++++.   .|++|+.  ++.+..+.+|..+|.++.|  +|++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34455668999999999999988887753   4999995  4567779999999999997  799999999999999999


Q ss_pred             ccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcC-CCCEEE
Q 004270          120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVA  197 (764)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp-~~~~la  197 (764)
                      +.+++.    +..+..+...+..++|+|++  ++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|+
T Consensus        84 ~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           84 YNTGEK----VVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             TTTCCE----EEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             CCCCcE----EEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            999887    77788888889999999999  89999999999999999987 77888999999999999999 889999


Q ss_pred             EEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee--CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE
Q 004270          198 VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS--DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH  275 (764)
Q Consensus       198 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~  275 (764)
                      +++.||.|++||+.+++....+..++...+.+++|+|  ++. ++++++.||.|++||+.+++.+..+. +|...|.+++
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~  235 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV  235 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEE
Confidence            9999999999999999988888887678999999999  888 99999999999999999999998888 8999999999


Q ss_pred             EecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE-EEEEeCCCcEEEEEeecccccccccc
Q 004270          276 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQ  354 (764)
Q Consensus       276 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~  354 (764)
                      |+|+++++++++.||.|++|++...    .....+..|...+.+++|+|++.. +++++.++.+.+|++........+..
T Consensus       236 ~~~~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (814)
T 3mkq_A          236 FHPTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP  311 (814)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECC
Confidence            9999999999999999999988765    567777889999999999999873 24444566699998765543222211


Q ss_pred             hhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc--eEEE------EEccceeecceeecCCCCCCCC
Q 004270          355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA--QAYV------WRLQNFVLGEHILRPCPENPTA  426 (764)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------w~~~~~~~~~~~~~~~~~~~~~  426 (764)
                                                       +...+........  .+..      |++...............+...
T Consensus       312 ---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (814)
T 3mkq_A          312 ---------------------------------VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF  358 (814)
T ss_dssp             ---------------------------------SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred             ---------------------------------CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence                                             0001111110000  0000      1111111111111111234567


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270          427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  506 (764)
                      +.+++++|+|+++++++ +|.+.+|++.....             .+.+.+.+++|+|+++++++++.+|.|++|+.-. 
T Consensus       359 ~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~-------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-  423 (814)
T 3mkq_A          359 PQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN-------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-  423 (814)
T ss_dssp             CSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-
T ss_pred             CceeEECCCCCEEEEec-CCEEEEEECccccc-------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-
Confidence            89999999999999998 89999999753221             4557788999999999999999999999996321 


Q ss_pred             CeeeeEecCcceEEEEEeecC---CEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE------eC
Q 004270          507 DLKSRWEVGCSLVKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS------GM  577 (764)
Q Consensus       507 ~~~~~~~~~~~i~~~~~s~~~---~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~------s~  577 (764)
                            .+...+.+++|+|++   ++|++++.|+.|++||+.+++.+..+.+|..   .++|+|||++|+++      +.
T Consensus       424 ------~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~  494 (814)
T 3mkq_A          424 ------EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDE  494 (814)
T ss_dssp             ------ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCS
T ss_pred             ------CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCC
Confidence                  233677888999998   6889999999999999999999999998865   89999999999999      66


Q ss_pred             CCcEEEEE
Q 004270          578 DGSLRIWD  585 (764)
Q Consensus       578 dg~i~iwd  585 (764)
                      ++.+.+|.
T Consensus       495 ~~~~~~~~  502 (814)
T 3mkq_A          495 ASGYTLLF  502 (814)
T ss_dssp             CSEEEEEE
T ss_pred             ceEEEEEe
Confidence            66555543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-43  Score=374.38  Aligned_cols=310  Identities=20%  Similarity=0.362  Sum_probs=266.1

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      ....+.+|.++|++++|+|++++|++|+.||.|++||+.+++....+..| .+.|.+++|+|+++ +|++|+.|++|++|
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSADMTIKLW  177 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence            34567899999999999999999999999999999999999999888765 88999999999999 99999999999999


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (764)
                      |+.+++.+..+. +|...|.+++|+|++.+|++++.|++|++||+...    ..+..+.+|...|.++.++|++.+++++
T Consensus       178 d~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          178 DFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             ETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            999999998888 89999999999999999999999999999998765    5677788999999999999999999999


Q ss_pred             eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (764)
Q Consensus       333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (764)
                      +.|++|++||+.+......+                                                            
T Consensus       253 s~D~~v~vwd~~~~~~~~~~------------------------------------------------------------  272 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAEL------------------------------------------------------------  272 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEE------------------------------------------------------------
T ss_pred             cCCCeEEEEECCCCceeeEe------------------------------------------------------------
Confidence            99999999998655432221                                                            


Q ss_pred             cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE
Q 004270          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (764)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  492 (764)
                              ..|...+.+++|+|++.+.....                            ...  .........+.+|+++
T Consensus       273 --------~~h~~~v~~~~~~~~~~~~~~~~----------------------------~~~--~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          273 --------REHRHVVECISWAPESSYSSISE----------------------------ATG--SETKKSGKPGPFLLSG  314 (410)
T ss_dssp             --------CCCSSCEEEEEECCSCGGGGGGG----------------------------CCS--CC-------CCEEEEE
T ss_pred             --------cCCCceEEEEEEcCcccccchhh----------------------------hcc--ccccccCCCCCEEEEE
Confidence                    13457788888887654211000                            000  0011223357899999


Q ss_pred             eCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270          493 GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  571 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~  571 (764)
                      +.|+.|++||+.+++++..+..+ ..|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            99999999999999998888765 78999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcC
Q 004270          572 LLSSGMDGSLRIWDVI  587 (764)
Q Consensus       572 l~s~s~dg~i~iwd~~  587 (764)
                      |++|+.|++|++|++.
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.7e-43  Score=355.70  Aligned_cols=292  Identities=16%  Similarity=0.240  Sum_probs=254.3

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCC----CCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270          171 KKKLYEFKGWGSSISSCVSSPA----LDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGA  244 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~----~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~  244 (764)
                      +.....+++|.+.|.+++|+|+    +.+|++|+.|++|++|++.+++...  .+ .+|...|.+++|++++. ++++++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~~~-~l~s~s   99 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHTLP-IAASSS   99 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSSSS-EEEEEE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCCCC-EEEEEe
Confidence            3445566899999999999985    5699999999999999998776433  34 34588999999999998 999999


Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      .|+.|++||+.+++.+..+. .|...+.+++|+|++++|++++.|+.|++|+++..    .....+..|...+.+++|+|
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----~~~~~~~~~~~~v~~~~~sp  174 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----KKEYSLDTRGKFILSIAYSP  174 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----SEEEEEECSSSCEEEEEECT
T ss_pred             CCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----ceeEEecCCCceEEEEEECC
Confidence            99999999999999999888 78889999999999999999999999999998765    34555567778888888888


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      ++++|++++.|+.|++||+.+++                                                         
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~---------------------------------------------------------  197 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGK---------------------------------------------------------  197 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTE---------------------------------------------------------
T ss_pred             CCCEEEEEcCCCeEEEEECCCCc---------------------------------------------------------
Confidence            88888888888888888764321                                                         


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  484 (764)
                                                                           ....+        .+|...|.+++|+|
T Consensus       198 -----------------------------------------------------~~~~~--------~~h~~~v~~l~~sp  216 (321)
T 3ow8_A          198 -----------------------------------------------------LLHTL--------EGHAMPIRSLTFSP  216 (321)
T ss_dssp             -----------------------------------------------------EEEEE--------CCCSSCCCEEEECT
T ss_pred             -----------------------------------------------------EEEEE--------cccCCceeEEEEcC
Confidence                                                                 12222        27888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                      ++++|++++.|+.|++||+.+++....+..+ ..|.+++|+|++.+|++++.|+.|++||+.+++++..+.+|.+.|.++
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV  296 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence            9999999999999999999999988888765 789999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      +|+|+|++|++++.|++|++||.+
T Consensus       297 ~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          297 KYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EECTTSSEEEEEETTCCEEEEECC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-42  Score=357.59  Aligned_cols=292  Identities=16%  Similarity=0.347  Sum_probs=264.3

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      +....+.. |.+.|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. .|...|.+++|+|++++|++++.|+.++
T Consensus        46 ~~~~~l~g-H~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           46 RTRRTLRG-HLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECC-CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             hhheeecC-CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            34455555 489999999999999 99999999999999999999988888 8999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|++............+.+|...|.++.|++++. +++++.|++|++||+.++.....+                     
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---------------------  180 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---------------------  180 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------------------
Confidence            9999877655567778889999999999998875 899999999999998765432221                     


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                     .+|...+.+++++|+++++++|+.||.|++||+
T Consensus       181 -----------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          181 -----------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             -----------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             -----------------------------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence                                                           245688999999999999999999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL  530 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l  530 (764)
                      .++.....+.        +|...|.+++|+|++++|++++.||+|++||+.+++.+..+.+.   ..+.+++|+|++++|
T Consensus       214 ~~~~~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          214 REGMCRQTFT--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TTCSEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCCeeEEEEc--------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            9998887775        89999999999999999999999999999999999888777654   479999999999999


Q ss_pred             EEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.|++|++||
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-43  Score=355.38  Aligned_cols=289  Identities=20%  Similarity=0.298  Sum_probs=256.9

Q ss_pred             eeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          261 SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      .... +|.+.|.+++|+|+    +.+|++|+.|++|++|+++...  ......+.+|...|.+++|++++..+++++.|+
T Consensus        26 ~~~~-~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           26 KQEQ-AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EETT-SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eecc-cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            3344 89999999999885    5689999999999999987642  234456789999999999999999999999999


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      +|++||+.+++....+.                                                               
T Consensus       103 ~i~lWd~~~~~~~~~~~---------------------------------------------------------------  119 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSID---------------------------------------------------------------  119 (321)
T ss_dssp             EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred             cEEEEECCCCCEEEEEe---------------------------------------------------------------
Confidence            99999987664433221                                                               


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                           .+...+.+++|+|+|+++++|+.+|.|++|++.++.....+.        .|...|.+++|+|++++|++++.||
T Consensus       120 -----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          120 -----AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             -----CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -----CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCCC
Confidence                 233567789999999999999999999999999998877764        7888999999999999999999999


Q ss_pred             eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270          497 DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~  575 (764)
                      .|++||+.+++.+..+..+ .+|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|+++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  266 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS  266 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9999999999999888765 789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          576 GMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       576 s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +.|++|++||+.+++++..+..|. .|.+++|+|+|.+|++++.|+ .|++|+..
T Consensus       267 s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-~i~vwd~p  320 (321)
T 3ow8_A          267 SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-EIHIYDCP  320 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-CEEEEECC
T ss_pred             eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEeCC
Confidence            999999999999999999987665 599999999999999999999 59999963

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-42  Score=348.28  Aligned_cols=293  Identities=17%  Similarity=0.243  Sum_probs=259.1

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      +...++.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+|.+++|+|+++ +|++|+.|+.|++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~s~s~d~~i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFIARKN-WIIVGSDDFRIRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGT-EEEEEETTSEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEeCCCC-EEEEECCCCEEEE
Confidence            456788999999999999999999999999999999999999999888765 78999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~  330 (764)
                      ||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||++...   .....+.+|...|.+++|+| ++..|+
T Consensus        82 wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           82 FNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEE
Confidence            9999999999998 899999999999999999999999999999987642   45567789999999999999 678999


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      +++.|++|++||+........                                                           
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~-----------------------------------------------------------  178 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFT-----------------------------------------------------------  178 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEE-----------------------------------------------------------
T ss_pred             EEeCCCeEEEEECCCCCccce-----------------------------------------------------------
Confidence            999999999999753321100                                                           


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCE
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTL  488 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~  488 (764)
                                                                         +.       .+|...+..+.++|  ++++
T Consensus       179 ---------------------------------------------------~~-------~~~~~~v~~~~~~~~~~~~~  200 (304)
T 2ynn_A          179 ---------------------------------------------------LT-------TGQERGVNYVDYYPLPDKPY  200 (304)
T ss_dssp             ---------------------------------------------------EE-------CCCTTCEEEEEECCSTTCCE
T ss_pred             ---------------------------------------------------ec-------cCCcCcEEEEEEEEcCCCCE
Confidence                                                               00       15666788888876  6789


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      |++++.|++|++||+.+++++..+..+ ..|.+++|+|++.+|++|+.||.|++||+.++++++.+..|...+.+++|+|
T Consensus       201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            999999999999999999999998866 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCc--EEEEEeCCCcEEEEEcCc
Q 004270          568 DGK--WLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       568 dg~--~l~s~s~dg~i~iwd~~~  588 (764)
                      +++  ++++|+.|| +.+|++.+
T Consensus       281 ~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          281 TGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             TCGGGCEEEEETTE-EEEEECC-
T ss_pred             CCCceEEEEecCCc-eEEEEecc
Confidence            885  577777555 88888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-42  Score=367.14  Aligned_cols=288  Identities=23%  Similarity=0.354  Sum_probs=261.6

Q ss_pred             eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (764)
                      ...+. +|.++|++++|+|++++|++|+.|++|++||+.+.    .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       101 ~~~l~-gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             SCEEE-CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             eEeec-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            34455 89999999999999999999999999999998776    45677789999999999999999999999999999


Q ss_pred             EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (764)
Q Consensus       340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (764)
                      +||+.+......                                                                    
T Consensus       176 iwd~~~~~~~~~--------------------------------------------------------------------  187 (410)
T 1vyh_C          176 LWDFQGFECIRT--------------------------------------------------------------------  187 (410)
T ss_dssp             EEETTSSCEEEC--------------------------------------------------------------------
T ss_pred             EEeCCCCceeEE--------------------------------------------------------------------
Confidence            999865433222                                                                    


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                      ..+|...|.+++|+|+|+++++|+.||.|++||+.++.....+.        +|...|.+++++|+++++++++.|+.|+
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            23566899999999999999999999999999999998888775        8999999999999999999999999999


Q ss_pred             EEECCCCCeeeeEecC-cceEEEEEeec--------------------CCEEEEEeCCCeEEEEEccCCeEEEEeecCCC
Q 004270          500 VWDFKGRDLKSRWEVG-CSLVKIVYHRV--------------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~-~~i~~~~~s~~--------------------~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~  558 (764)
                      +||+.+++....+..+ ..|.+++|+|+                    +.+|++|+.|+.|++||+.+++++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999988888655 78999999996                    67899999999999999999999999999999


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .|++++|+|+|++|++++.|++|++||+.+++++..+..|. .|++++|+|++.+|++++.|+ .|++|+.+
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~-~i~vW~~r  410 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeCC
Confidence            99999999999999999999999999999999999998776 499999999999999999999 69999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-42  Score=366.63  Aligned_cols=342  Identities=14%  Similarity=0.237  Sum_probs=289.5

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEc----cCCc------eEEEEecc-------
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNV----RYDE------ELVTFTHS-------  222 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~----~~~~------~~~~~~~~-------  222 (764)
                      ..+.+|+.+..........|.+.|.+++|+|+++ +||+|+.||.|++|++    .+++      ....+...       
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            3456788877766666677789999999999999 9999999999999999    8888      45555441       


Q ss_pred             --CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          223 --MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       223 --~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                        |.+.|++++|+|+++ +|++|+.||.|++|| .+++.+..+. +|...|.+++|+|++++|++++.|+.|++|++...
T Consensus       105 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             ---CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             cCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence              467999999999999 999999999999999 6777777777 89999999999999999999999999999998765


Q ss_pred             CCCceeeEeccCCCCC---------------CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          301 DGDPRLLRFRSGHSAP---------------PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~---------------v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                          ..+..+..+...               +.+++|++++ .+++++.|+.|++||+.+......+             
T Consensus       182 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~-------------  243 (425)
T 1r5m_A          182 ----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL-------------  243 (425)
T ss_dssp             ----EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-------------
T ss_pred             ----cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-------------
Confidence                556666666666               9999999985 5889999999999998765432221             


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~  445 (764)
                                                                             ..+...+.+++++|+++++++++.+
T Consensus       244 -------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d  268 (425)
T 1r5m_A          244 -------------------------------------------------------IGHHGPISVLEFNDTNKLLLSASDD  268 (425)
T ss_dssp             -------------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             -------------------------------------------------------ccCCCceEEEEECCCCCEEEEEcCC
Confidence                                                                   1345789999999999999999999


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH  524 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s  524 (764)
                      |.|++||+.++.....+.        .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+ ..+.+++|+
T Consensus       269 ~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          269 GTLRIWHGGNGNSQNCFY--------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             SCEEEECSSSBSCSEEEC--------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             CEEEEEECCCCccceEec--------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            999999999988877774        799999999999999 9999999999999999999998888764 899999999


Q ss_pred             ecCCEEEEEeCCCeEEEEEccCCe--------------------EEEEeecCCC--CeeEEEEcCCCcEEEEEeCCCcEE
Q 004270          525 RVNGLLATVADDLVIRLFDVVALR--------------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLR  582 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d~~~~~--------------------~~~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~i~  582 (764)
                      |++++|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|++++|++++.||.|+
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence            999999999999999999999988                    8999999977  999999999999999999999999


Q ss_pred             EEEcC
Q 004270          583 IWDVI  587 (764)
Q Consensus       583 iwd~~  587 (764)
                      +||++
T Consensus       420 iw~~~  424 (425)
T 1r5m_A          420 VVAIP  424 (425)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.8e-42  Score=353.73  Aligned_cols=289  Identities=20%  Similarity=0.313  Sum_probs=256.8

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      +...++++|...|.+++|+|++++|++|+.||.|++||..+++....+..+ ...|.+++|+|+|. ++++|+.|+.+++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~-~lasg~~d~~i~v  132 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGC-AIACGGLDNKCSV  132 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSS-EEEEESTTSEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCC-EEEEeeCCCCEEE
Confidence            567889999999999999999999999999999999999999988888765 77899999999999 9999999999999


Q ss_pred             EECCCc------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270          252 WNLEKR------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-  324 (764)
Q Consensus       252 wd~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-  324 (764)
                      |++...      .....+. +|.+.|.+++|+|++..|++++.|++|++||++..    ..+..+.+|...|.+++++| 
T Consensus       133 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----QLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECCC
T ss_pred             EEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEEeC
Confidence            998643      2344455 79999999999999999999999999999998765    56777889999999999987 


Q ss_pred             -CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       325 -~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                       ++++|++++.||++++||+++++.                                                       
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~-------------------------------------------------------  232 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQC-------------------------------------------------------  232 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCE-------------------------------------------------------
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcE-------------------------------------------------------
Confidence             568899999999999998754321                                                       


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                                                             ...+        .+|...|.+++|+
T Consensus       233 -------------------------------------------------------~~~~--------~~h~~~v~~v~~~  249 (354)
T 2pbi_B          233 -------------------------------------------------------VQAF--------ETHESDVNSVRYY  249 (354)
T ss_dssp             -------------------------------------------------------EEEE--------CCCSSCEEEEEEC
T ss_pred             -------------------------------------------------------EEEe--------cCCCCCeEEEEEe
Confidence                                                                   1111        2788999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI  560 (764)
Q Consensus       484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i  560 (764)
                      |++.+|++++.|++|++||+.+++.+..+..+   ..+.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.+.|
T Consensus       250 p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v  329 (354)
T 2pbi_B          250 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV  329 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence            99999999999999999999988777666544   478999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          561 TDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       561 ~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ++++|+|||++|++++.|++|++|+
T Consensus       330 ~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          330 STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-41  Score=343.22  Aligned_cols=290  Identities=18%  Similarity=0.270  Sum_probs=253.3

Q ss_pred             eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (764)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v  294 (764)
                      ...++..+ .+.|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. .|..+|.+++|+|++++|++++.|++|++
T Consensus         5 ~~~~~~~h-~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            5 IKKTFSNR-SDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CEEEEEEE-CSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eEEeecCC-CCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            34556555 78999999999999 99999999999999999999999888 89999999999999999999999999999


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      ||+...    +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++...                         
T Consensus        82 wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-------------------------  132 (304)
T 2ynn_A           82 FNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------------------------  132 (304)
T ss_dssp             EETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-------------------------
T ss_pred             EECCCC----cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-------------------------
Confidence            998766    567778899999999999999999999999999999997532110                         


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (304)
T 2ynn_A          133 --------------------------------------------------------------------------------  132 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEee--cCCE
Q 004270          455 SGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR--VNGL  529 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~--~~~~  529 (764)
                          ...+        .+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..+  ..+..+.++|  ++.+
T Consensus       133 ----~~~~--------~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (304)
T 2ynn_A          133 ----EQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (304)
T ss_dssp             ----EEEE--------CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred             ----hhhh--------cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence                0011        27899999999999 6789999999999999999887776666433  6788999987  7789


Q ss_pred             EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcC
Q 004270          530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSP  608 (764)
Q Consensus       530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp  608 (764)
                      |++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++.||+|++||+.+++++..+..+. .+.+++|+|
T Consensus       201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998764 599999999


Q ss_pred             CCC--eEEEEEeCCCeEEEEeccc
Q 004270          609 NMD--VLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       609 ~g~--~lat~~~d~~~i~lW~~~~  630 (764)
                      ++.  ++|+++.|  ++.+|++..
T Consensus       281 ~~~~~~~asg~~~--g~~~~~~~~  302 (304)
T 2ynn_A          281 TGRKNYIASGFDN--GFTVLSLGN  302 (304)
T ss_dssp             TCGGGCEEEEETT--EEEEEECC-
T ss_pred             CCCceEEEEecCC--ceEEEEecc
Confidence            885  57777655  488888753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-41  Score=344.96  Aligned_cols=291  Identities=18%  Similarity=0.322  Sum_probs=250.9

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCC-----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          172 KKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD-----EELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      .+..++.+|.+.|.+++|+|++ ++|++|+.|++|++|++...     ..+..+..| ...|.+++|+|+++ +|++|+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~-~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGA-YALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSS-EEEEEET
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCC-EEEEEeC
Confidence            4566789999999999999965 89999999999999998743     345556554 88999999999999 9999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      |++|++||+.+++.+..+. +|...|.+++|+|++.+|++++.|++|++|+++.     ..+..+.+|...|.++++.|.
T Consensus        86 D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEEEEEECCC
T ss_pred             CCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeccCCcEEEEEEccC
Confidence            9999999999999999988 9999999999999999999999999999999853     356677899999999999885


Q ss_pred             C------CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          326 G------RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       326 ~------~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      +      ..+++++.|+.|++||+.                                                       
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~-------------------------------------------------------  184 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLN-------------------------------------------------------  184 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETT-------------------------------------------------------
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECC-------------------------------------------------------
Confidence            3      356666666666666643                                                       


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (764)
                                                                             ++.....+        .+|...|.+
T Consensus       185 -------------------------------------------------------~~~~~~~~--------~~h~~~v~~  201 (319)
T 3frx_A          185 -------------------------------------------------------QFQIEADF--------IGHNSNINT  201 (319)
T ss_dssp             -------------------------------------------------------TTEEEEEE--------CCCCSCEEE
T ss_pred             -------------------------------------------------------cchhheee--------cCCCCcEEE
Confidence                                                                   33322333        289999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec----
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----  555 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~----  555 (764)
                      ++|+|++++|++++.||.|++||+.+++.+..+..+..+.+++|+|++.++++++.+ .+++|++..+..+..+..    
T Consensus       202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~  280 (319)
T 3frx_A          202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG  280 (319)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc
Confidence            999999999999999999999999999999999989999999999999999988765 599999998888777653    


Q ss_pred             ----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270          556 ----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       556 ----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                          |...+.+++|+|||++|++|+.|+.|++||+.++
T Consensus       281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                4567999999999999999999999999999765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7e-43  Score=365.39  Aligned_cols=307  Identities=20%  Similarity=0.294  Sum_probs=265.3

Q ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l  240 (764)
                      ..+..|+..+..+.+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+..+ ...|.+++|+|+|+ +|
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g~-~l  123 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNGQ-SV  123 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTSS-EE
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCCC-EE
Confidence            44567888888999999999999999999999999999999999999999999999888775 78899999999999 99


Q ss_pred             EEEeCCCcEEEEECCCce-------eeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEec--
Q 004270          241 ASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFR--  310 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--  310 (764)
                      ++|+.|+.+++||+.+..       ....+. +|.+.|.++.|+|++ ..|++++.|++|++||+....    .+..+  
T Consensus       124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~----~~~~~~~  198 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ----RISIFGS  198 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC----EEEEECC
T ss_pred             EEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc----EEEEeec
Confidence            999999999999987532       233444 899999999999974 579999999999999887653    33332  


Q ss_pred             ---cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          311 ---SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       311 ---~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                         .+|...|.+++|++ ++++|++|+.|++|++||++....                                      
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--------------------------------------  240 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR--------------------------------------  240 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------------------------------------
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------------------------------------
Confidence               67999999999987 888999999999999999742110                                      


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                                                                                             ....+    
T Consensus       241 -----------------------------------------------------------------------~~~~~----  245 (380)
T 3iz6_a          241 -----------------------------------------------------------------------AVRTY----  245 (380)
T ss_dssp             -----------------------------------------------------------------------CCEEE----
T ss_pred             -----------------------------------------------------------------------ceEEE----
Confidence                                                                                   01111    


Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCe
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLV  538 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~  538 (764)
                          .+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..+        ..+.+++|+|+|++|++|+.||.
T Consensus       246 ----~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          246 ----HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             ----CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             ----CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence                379999999999999999999999999999999999888776543        24899999999999999999999


Q ss_pred             EEEEEccCCeEEEEe----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce
Q 004270          539 IRLFDVVALRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       539 i~v~d~~~~~~~~~~----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~  591 (764)
                      |++||+.+++.+..+    .+|.+.|++++|+|||++|++|+.|++|++|++...+.
T Consensus       322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            999999999988887    68999999999999999999999999999999986643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=349.67  Aligned_cols=307  Identities=17%  Similarity=0.249  Sum_probs=237.9

Q ss_pred             CCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          170 TKKKLYEFKGWGS-SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       170 ~~~~~~~~~~h~~-~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      ..+++.++.+|.. .|.+++|+|++++||+|+.|+.|+|||+.++....  .+..+|...|.+++|+|+++ +|++|+.|
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D   82 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFD   82 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECC
Confidence            3467788999988 99999999999999999999999999999886543  33356689999999999999 99999999


Q ss_pred             CcEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          247 GVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       247 g~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      +.|++||+..+  +.+..+. +|...|.+++|+|++++|++++.|++|++|+++... ....+..+.+|...|.+++|+|
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEEEEEECS
T ss_pred             CcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeEEEEECC
Confidence            99999998876  3456666 899999999999999999999999999999987653 2345667789999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      ++++|++++.|++|++|+...+.....                                                     
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~-----------------------------------------------------  187 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCC-----------------------------------------------------  187 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEE-----------------------------------------------------
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEE-----------------------------------------------------
Confidence            999999999999999999754321000                                                     


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  484 (764)
                                   .                                          .+        .+|...|.+++|+|
T Consensus       188 -------------~------------------------------------------~~--------~~h~~~v~~l~~sp  204 (345)
T 3fm0_A          188 -------------A------------------------------------------TL--------EGHESTVWSLAFDP  204 (345)
T ss_dssp             -------------E------------------------------------------EE--------CCCSSCEEEEEECT
T ss_pred             -------------E------------------------------------------Ee--------cCCCCceEEEEECC
Confidence                         0                                          00        14555555555555


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC---------------CeeeeEe--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270          485 TNTLMISAGYHGDIKVWDFKGR---------------DLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~---------------~~~~~~~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~  547 (764)
                      ++++|++++.|++|++|+....               +++..+.  +...|.+++|+|++..|++++.|+.|++|+....
T Consensus       205 ~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            5555555555555555553211               1122222  3478999999999999999999999999998754


Q ss_pred             e---------EEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEE
Q 004270          548 R---------MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAI  595 (764)
Q Consensus       548 ~---------~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~  595 (764)
                      .         ......+|...|++++|+|++ .+||+++.||+|++|++.+++.....
T Consensus       285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            2         123346899999999999998 59999999999999999988765543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=362.48  Aligned_cols=357  Identities=14%  Similarity=0.177  Sum_probs=287.7

Q ss_pred             CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC----CCce------eeeeeec-------
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL----EKRR------LQSVIRE-------  265 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~----~~~~------~~~~~~~-------  265 (764)
                      ..+.+|+++..........+ .+.|++++|+|+++.+|++|+.||.|++||+    .+++      ....+..       
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVK-LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS  103 (425)
T ss_dssp             ---------CCCEECEEEEE-CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred             cccccccchhhhhheeeeec-cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence            34567887665555444333 6899999999999878999999999999999    8887      4444441       


Q ss_pred             --ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          266 --AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       266 --~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                        +|.+.|.+++|+|++++|++++.|+.|++|+..     ...+..+.+|...|.+++|+|++++|++++.|+.+++||+
T Consensus       104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV  178 (425)
T ss_dssp             ----CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence              167899999999999999999999999999822     2566777899999999999999999999999999999999


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      .++.....+........                                                     ..........
T Consensus       179 ~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~  205 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGS-----------------------------------------------------SINAENHSGD  205 (425)
T ss_dssp             TTTEEEEEECCC--------------------------------------------------------------------
T ss_pred             CCCcEEEEeeccccCcc-----------------------------------------------------ceeeccccCC
Confidence            77655444322110000                                                     0000000011


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      ...+.++++++++ .+++++.+|.|++|++.++.....+.        .|...|.+++|+|++++|++++.||.|++||+
T Consensus       206 ~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          206 GSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI--------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred             cceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            2347788898874 58899999999999999988877764        89999999999999999999999999999999


Q ss_pred             CCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEE
Q 004270          504 KGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  582 (764)
Q Consensus       504 ~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~  582 (764)
                      .+++.+..+.. ...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus       277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  355 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN  355 (425)
T ss_dssp             SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence            99988888864 4899999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCccc--------------------eEEEEeeC--C-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          583 IWDVILAR--------------------QIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       583 iwd~~~~~--------------------~~~~~~~~--~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +||+.+++                    ++..+..+  . .|++++|+|++++|++++.|+ .|++|+++
T Consensus       356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~  424 (425)
T 1r5m_A          356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ-EGSVVAIP  424 (425)
T ss_dssp             EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS-CCEEEECC
T ss_pred             EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc-eEEEEeec
Confidence            99999988                    88888877  5 799999999999999999999 59999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-42  Score=357.99  Aligned_cols=322  Identities=17%  Similarity=0.192  Sum_probs=243.8

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC------CCcEEEEEecCCCC
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA------DNSIKMWIFDTTDG  302 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------d~~i~vw~~~~~~~  302 (764)
                      .+.+.+++.  ++.++.+.....|++....+    . +|...|++++|+|||++|++++.      |+.+++|+......
T Consensus        10 g~d~g~~~~--~~~~~g~~~~~~w~~p~~~p----~-~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~   82 (357)
T 4g56_B           10 GVDLGTENL--YFQSNGSSKGSAWGRPVTAP----A-CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP   82 (357)
T ss_dssp             -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred             CCCCCccce--EEecCCCccccccCCCCCCc----c-cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence            445555553  44555567789999764432    2 79999999999999999999997      67788886655443


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                      .........+|...|.+++|+|+++ +++++.||+|++||+.+++.......                            
T Consensus        83 ~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~----------------------------  133 (357)
T 4g56_B           83 NESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF----------------------------  133 (357)
T ss_dssp             CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCE----------------------------
T ss_pred             ceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEee----------------------------
Confidence            3344445567899999999999975 56788899999999876543222100                            


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                          ...+|...|.+++|+|+|++|++|+.||.|++||+.++.....+
T Consensus       134 ------------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          134 ------------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             ------------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ------------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence                                                01246689999999999999999999999999999999888887


Q ss_pred             cCccccccccccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecC-CEEEEEeCCC
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVN-GLLATVADDL  537 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~-~~la~~~~d~  537 (764)
                      .        +|...|++++|++++. ++++++.||.|++||+.+++....+..   ...+.+++|+|++ .+|++|+.|+
T Consensus       178 ~--------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~  249 (357)
T 4g56_B          178 N--------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG  249 (357)
T ss_dssp             C--------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred             c--------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence            5        8999999999999874 789999999999999999887776643   3679999999974 6889999999


Q ss_pred             eEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC-CCCeEEE
Q 004270          538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLAT  615 (764)
Q Consensus       538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~lat  615 (764)
                      .|++||+.+++.+..+.+|...|++++|+|++ ++|++++.|++|+|||+.+++++..+.+...|++++|+| ++.+||+
T Consensus       250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence            99999999999999999999999999999987 589999999999999999999988887777899999999 8999999


Q ss_pred             EEeCCCeEEEEecccc
Q 004270          616 AHVDQNGVYLWVNRCM  631 (764)
Q Consensus       616 ~~~d~~~i~lW~~~~~  631 (764)
                      ++.|+ .|++|++...
T Consensus       330 ~s~Dg-~v~iW~~~~~  344 (357)
T 4g56_B          330 VGWDH-KVLHHHLPSE  344 (357)
T ss_dssp             EETTS-CEEEEECC--
T ss_pred             EcCCC-eEEEEECCCC
Confidence            99999 5999998643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.2e-42  Score=356.34  Aligned_cols=310  Identities=16%  Similarity=0.241  Sum_probs=235.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc------CCeEEEEEccCCceEEE---EeccC
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS------DGKIHVHNVRYDEELVT---FTHSM  223 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~------dg~i~iwd~~~~~~~~~---~~~~~  223 (764)
                      .++.++.+.....|++...    ...+|...|.+++|||||++||+|+.      |+.|++|+..++.....   ....|
T Consensus        18 ~~~~~~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~   93 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT   93 (357)
T ss_dssp             --------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred             eEEecCCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence            4555566677899987543    33579999999999999999999997      78899999877653221   12234


Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee---ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI---REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      ...|.+++|+|++.  +++++.||.|++||+.+++.....   ..+|.+.|++++|+|++++|++++.|+.|++||+...
T Consensus        94 ~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B           94 EAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            67899999999986  556788999999999888654322   2379999999999999999999999999999998765


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (764)
                          ..+..+.+|...|++++|++++. .+++++.|++|++||+++++....+.                          
T Consensus       172 ----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------------  221 (357)
T 4g56_B          172 ----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--------------------------  221 (357)
T ss_dssp             ----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC--------------------------
T ss_pred             ----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee--------------------------
Confidence                67788889999999999999774 78899999999999976543221110                          


Q ss_pred             eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (357)
T 4g56_B          222 --------------------------------------------------------------------------------  221 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCC
Q 004270          460 GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADD  536 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d  536 (764)
                                ...|...+.+++|+|++ .+|++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++ ++||+|+.|
T Consensus       222 ----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          222 ----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             ----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             ----------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence                      02567789999999974 68889999999999999999998888765 889999999987 589999999


Q ss_pred             CeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCcc
Q 004270          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                      ++|+|||++++++++.+ +|.+.|++++|+| |+++|+|++.||+|++|++++.
T Consensus       292 ~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999888665 7999999999998 8999999999999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-40  Score=342.60  Aligned_cols=289  Identities=18%  Similarity=0.300  Sum_probs=258.0

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd  209 (764)
                      ..++..|...+..+.|+|++  ++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             heeecCCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            56677888899999999999  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270          210 VRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (764)
Q Consensus       210 ~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  285 (764)
                      +.+++    ....+.. |.+.|.++.|++++.  +++++.|+.|++||+++++.+..+. +|.+.|.+++|+|+++++++
T Consensus       126 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          126 LKTREGNVRVSRELAG-HTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             TTTCSBSCEEEEEEEC-CSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEE
T ss_pred             CccCCCcceeEEEecC-CCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEE
Confidence            98764    3344444 588999999999875  8889999999999999999998888 89999999999999999999


Q ss_pred             EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      ++.|++|++||+...    .....+.+|...|.+++|+|++++|++++.|++|++||+........+.            
T Consensus       202 g~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------------  265 (340)
T 1got_B          202 GACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS------------  265 (340)
T ss_dssp             EETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------------
T ss_pred             EeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------------
Confidence            999999999998765    5677788999999999999999999999999999999987654322211            


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~  445 (764)
                                                                            ...+...+.+++|+|+|+++++|+.|
T Consensus       266 ------------------------------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          266 ------------------------------------------------------HDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             ------------------------------------------------------CTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ------------------------------------------------------cCCcccceEEEEECCCCCEEEEECCC
Confidence                                                                  01223579999999999999999999


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      |.|++||+.++.....+.        +|...|.+++|+|++++|++++.||.|++||
T Consensus       292 ~~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CeEEEEEcccCcEeeEee--------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999988877775        8999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=347.32  Aligned_cols=299  Identities=15%  Similarity=0.197  Sum_probs=236.0

Q ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC------------CceEEEEeccCCCCEEEE
Q 004270          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY------------DEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~------------~~~~~~~~~~~~~~v~~l  230 (764)
                      .+.|++....+    ..|...|.+++|+|||++|++++ |+++++||...            +.....+.  +...|.++
T Consensus        16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~   88 (344)
T 4gqb_B           16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ--TEAGVADL   88 (344)
T ss_dssp             -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEE--ESSCEEEE
T ss_pred             ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeec--cCCCEEEE
Confidence            46677654432    35778899999999999999887 67778886321            11112222  25679999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee---cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR---EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      +|+|++  .|++|+.||.|+|||+++++......   .+|.+.|++++|+|++++|++++.|++|++||+...    +.+
T Consensus        89 ~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----~~~  162 (344)
T 4gqb_B           89 TWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----VVL  162 (344)
T ss_dssp             EEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEE
T ss_pred             EEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEE
Confidence            999986  57899999999999999887554332   379999999999999999999999999999998765    678


Q ss_pred             EeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          308 RFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                      ..+.+|...|.+++|++++ ..|++++.|++|++||+++++....+..                                
T Consensus       163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------------------------  210 (344)
T 4gqb_B          163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--------------------------------  210 (344)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------------
T ss_pred             EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------------------------------
Confidence            8889999999999999987 5788999999999999865433221100                                


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (344)
T 4gqb_B          211 --------------------------------------------------------------------------------  210 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEE
Q 004270          467 ERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFD  543 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d  543 (764)
                          ..|...+.+++|+|+ ++++++++.||.|++||+++++++..+..+ ..|.+++|+|++ ++||+|+.|++|+|||
T Consensus       211 ----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd  286 (344)
T 4gqb_B          211 ----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD  286 (344)
T ss_dssp             -------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             ----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence                145667889999985 578899999999999999999999988866 889999999998 5899999999999999


Q ss_pred             ccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCccce
Q 004270          544 VVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       544 ~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~  591 (764)
                      +.+++++ .+.+|.+.|++++|+|+++ +|++++.|++|++|++++...
T Consensus       287 ~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          287 SSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            9998865 5789999999999999986 567999999999999987543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=340.62  Aligned_cols=299  Identities=21%  Similarity=0.318  Sum_probs=237.2

Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC--ceEEEEecc-CCCCEEEEEEeeCCCCEEEEEeC
Q 004270          169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD--EELVTFTHS-MRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~-~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      .+.+++..+++|.+.|.+++|+|+  +||+|+.|+.|++||+.++  +....+... |.+.|.+++|+|+++ +|++|+.
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~   78 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF   78 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEET
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeC
Confidence            456788899999999999999997  9999999999999999875  344555333 688999999999998 9999999


Q ss_pred             CCcEEEEECCC-------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          246 SGVISIWNLEK-------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       246 dg~i~iwd~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      |+.|++||+..       .+.+..+. +|...|.+++|+|++++|++++.|++|++||++........+..+.+|...|.
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            99999999853       34556666 89999999999999999999999999999998654444466778889999999


Q ss_pred             eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +++|+|++.+|++++.|++|++||...+..                                                  
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--------------------------------------------------  187 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDW--------------------------------------------------  187 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEE--------------------------------------------------
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCe--------------------------------------------------
Confidence            999999999999999999999999753210                                                  


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                                                                .....+        .+|...|.
T Consensus       188 ----------------------------------------------------------~~~~~~--------~~h~~~v~  201 (330)
T 2hes_X          188 ----------------------------------------------------------ECVAVL--------NGHEGTVW  201 (330)
T ss_dssp             ----------------------------------------------------------EEEEEE--------CCCSSCEE
T ss_pred             ----------------------------------------------------------eEEEEc--------cCCCCcEE
Confidence                                                                      000011        27888888


Q ss_pred             EEEECCC--CCEEEEEeCCCeEEEEECCCC--------CeeeeEe--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          479 GVACDST--NTLMISAGYHGDIKVWDFKGR--------DLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       479 ~l~~~~~--~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      +++|+|+  +.+|++++.|++|++||+.++        .....+.  +...|.+++|+++ .+|++++.|+.|++||..+
T Consensus       202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEET
T ss_pred             EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCC
Confidence            8888887  668888888888888887654        2233332  4478999999965 5899999999999999988


Q ss_pred             Ce--EEE-EeecCCC-CeeEEEEcC--CCcEEEEEeCCCcEEEEEcCc
Q 004270          547 LR--MVR-KFEGHTD-RITDFCFSE--DGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       547 ~~--~~~-~~~~h~~-~i~~l~~s~--dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      ++  ... .+.+|.. .|++++|+|  ++++|++++.||+|++||+.+
T Consensus       281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            74  333 3467887 899999999  789999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.6e-41  Score=344.25  Aligned_cols=327  Identities=12%  Similarity=0.193  Sum_probs=282.8

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      .++|.+++|+|||+ +++++..++.+..|+........... +|...|.+++|+|++++|++++ |+.|++|+++.....
T Consensus         9 ~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            9 SKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             CCceeEEEECCCCC-EEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            46799999999999 88887777777777665554444444 7999999999999999999999 999999998875432


Q ss_pred             ceee-EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270          304 PRLL-RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (764)
Q Consensus       304 ~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (764)
                      .... ....+|...|.+++|+|++++|++++.|+.+++||+.+.......                              
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------------------------------  135 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------------------------------  135 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------------------------------
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------------------------------
Confidence            2221 122378999999999999999999999999999998764311100                              


Q ss_pred             ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (764)
                                                          ....+...+.+++++|+++++++++.+|.|++||+.++.....+
T Consensus       136 ------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          136 ------------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             ------------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ------------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence                                                01134578999999999999999999999999999998887776


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  542 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~  542 (764)
                      .        .|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+...+.+++|+|+++++++++.++.|++|
T Consensus       180 ~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          180 Q--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             C--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             e--------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            4        79999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe
Q 004270          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG  622 (764)
Q Consensus       543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~  622 (764)
                      |+.+++.. .+.+|...|.+++|+|++++|++++.||.|++||+.+++.+....+...+.+++|+|++++|++++.|+ .
T Consensus       252 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~  329 (337)
T 1gxr_A          252 HVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-K  329 (337)
T ss_dssp             ETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-C
T ss_pred             ECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCC-e
Confidence            99988754 677899999999999999999999999999999999999998877788899999999999999999999 5


Q ss_pred             EEEEecc
Q 004270          623 VYLWVNR  629 (764)
Q Consensus       623 i~lW~~~  629 (764)
                      |++|++.
T Consensus       330 i~iw~~~  336 (337)
T 1gxr_A          330 ATVYEVI  336 (337)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-40  Score=334.71  Aligned_cols=294  Identities=19%  Similarity=0.330  Sum_probs=257.6

Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ......++.+|...|++++|+|++++|++|+.||.|++|++.+++....+..+ ...|.+++|+|+++ +|++|+.||.|
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~~~d~~i   89 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN-LLVSASDDKTL   89 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCC-EEEEECCCCEE
Confidence            35677889999999999999999999999999999999999999988888665 78999999999998 99999999999


Q ss_pred             EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      ++||+++++.+..+. +|...|.+++|+|++++|++++.|+.|++||+...    +.+..+..|..+|.+++|+|+++++
T Consensus        90 ~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           90 KIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----EEEEEecCCCCcEEEEEEcCCCCEE
Confidence            999999999999888 89999999999999999999999999999998765    5667778899999999999999999


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++++.|+.|++||+.+++....                                                          
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~----------------------------------------------------------  186 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKT----------------------------------------------------------  186 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEE----------------------------------------------------------
T ss_pred             EEEeCCCcEEEEECCCCceeeE----------------------------------------------------------
Confidence            9999999999999754321110                                                          


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                                                                          +.       ..+...+..++|+|++++|
T Consensus       187 ----------------------------------------------------~~-------~~~~~~~~~~~~~~~~~~l  207 (312)
T 4ery_A          187 ----------------------------------------------------LI-------DDDNPPVSFVKFSPNGKYI  207 (312)
T ss_dssp             ----------------------------------------------------EC-------CSSCCCEEEEEECTTSSEE
T ss_pred             ----------------------------------------------------Ee-------ccCCCceEEEEECCCCCEE
Confidence                                                                00       1456678889999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeeEecCc-c---eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE
Q 004270          490 ISAGYHGDIKVWDFKGRDLKSRWEVGC-S---LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (764)
Q Consensus       490 ~s~~~dg~v~iwd~~~~~~~~~~~~~~-~---i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~  565 (764)
                      ++++.||.|++||+.+++.+..+..+. .   +......+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus       208 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  287 (312)
T 4ery_A          208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC  287 (312)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee
Confidence            999999999999999998888776552 2   233333467889999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEe--CCCcEEEEEcC
Q 004270          566 SEDGKWLLSSG--MDGSLRIWDVI  587 (764)
Q Consensus       566 s~dg~~l~s~s--~dg~i~iwd~~  587 (764)
                      +|++++|++++  .|++|++|+..
T Consensus       288 ~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCcCCceEEEEccCCccEEEecCC
Confidence            99999999987  69999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=344.92  Aligned_cols=298  Identities=18%  Similarity=0.228  Sum_probs=234.1

Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-----------eeeeeeecccccCeeE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----------RLQSVIREAHDNAIIS  273 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-----------~~~~~~~~~h~~~v~~  273 (764)
                      .+.|++.....     ..+...|.+++|+|||+ +|++++ |+++++||....           ....... .|...|.+
T Consensus        16 ~r~w~~~~~~~-----~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~   87 (344)
T 4gqb_B           16 AREWNLPPNAP-----ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV-QTEAGVAD   87 (344)
T ss_dssp             -------CCSC-----SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-EESSCEEE
T ss_pred             ccccCCCCCCc-----ccccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-ccCCCEEE
Confidence            35677654432     12356799999999999 888777 677888863210           1111111 46778999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccccc
Q 004270          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS  353 (764)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~  353 (764)
                      ++|+|++ .|++++.||+|++||++.............+|...|++++|+|+|++|++++.|++|++||+.+++.     
T Consensus        88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-----  161 (344)
T 4gqb_B           88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-----  161 (344)
T ss_dssp             EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence            9999986 7889999999999999877554444445668999999999999999999999999999998754321     


Q ss_pred             chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (764)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (764)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (344)
T 4gqb_B          162 --------------------------------------------------------------------------------  161 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                                               ...+        .+|...|.+++|++++ .++++++.|++|++||+.+++....+
T Consensus       162 -------------------------~~~~--------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          162 -------------------------LSSY--------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             -------------------------EEEE--------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             -------------------------EEEE--------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence                                     1112        3899999999999988 47899999999999999999888776


Q ss_pred             ecC---cceEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcC
Q 004270          513 EVG---CSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       513 ~~~---~~i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~  587 (764)
                      ...   ..+.+++|+|+ +.++++|+.|+.|++||+++++++..+.+|...|++++|+|+| ++|++++.|++|+|||+.
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            433   56899999995 5688999999999999999999999999999999999999998 589999999999999999


Q ss_pred             ccceEEEEeeCCceEEEEEcCCCC-eEEEEEeCCCeEEEEeccc
Q 004270          588 LARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       588 ~~~~~~~~~~~~~v~~l~~sp~g~-~lat~~~d~~~i~lW~~~~  630 (764)
                      +++++....+...|++++|+|+++ +|++++.|+ .|++|++..
T Consensus       289 ~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~-~v~~w~v~~  331 (344)
T 4gqb_B          289 LSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH-QVVHHVVPT  331 (344)
T ss_dssp             CCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS-CEEEEECCC
T ss_pred             CCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC-eEEEEECCC
Confidence            998776544455699999999986 567888898 599999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-40  Score=340.51  Aligned_cols=294  Identities=17%  Similarity=0.323  Sum_probs=255.8

Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      +....+. +|.+.|.+++|+|++++|++++.|++|++||....    ........|...|.+++|+|++.++++++.|+.
T Consensus        55 ~~~~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~  129 (354)
T 2pbi_B           55 KTRRTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK  129 (354)
T ss_dssp             CEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred             EEEEEec-CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence            4455666 89999999999999999999999999999987655    455566788999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      +++|++...........                                                           ... 
T Consensus       130 i~v~~~~~~~~~~~~~~-----------------------------------------------------------~~~-  149 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAK-----------------------------------------------------------KKS-  149 (354)
T ss_dssp             EEEEECCCCTTCCSGGG-----------------------------------------------------------CEE-
T ss_pred             EEEEEEecccccccccc-----------------------------------------------------------cee-
Confidence            99999864321110000                                                           000 


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCEEEEEeCC
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYH  495 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d  495 (764)
                        ...|...+.+++|+|+++.+++++.||.|++||+.+++....+.        +|...|.+++++|  ++++|++++.|
T Consensus       150 --~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          150 --VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             --EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             --eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence              01355889999999999999999999999999999999888775        8999999999987  56899999999


Q ss_pred             CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC--CCCeeEEEEcCCCcEE
Q 004270          496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWL  572 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h--~~~i~~l~~s~dg~~l  572 (764)
                      |.|++||+.+++++..+..+ ..|.+++|+|++.+|++++.|++|++||+.+++.+..+..+  ...+++++|+|+|++|
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            99999999999998888755 88999999999999999999999999999999888777644  3578999999999999


Q ss_pred             EEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          573 LSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ++++.|++|++||+.+++.+..+..|. .|++++|+|||++||+++.|+ .|++|+
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~-~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH-TLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS-EEEEEC
T ss_pred             EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC-CEEecC
Confidence            999999999999999999998887665 599999999999999999999 699996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-40  Score=340.42  Aligned_cols=304  Identities=17%  Similarity=0.257  Sum_probs=244.5

Q ss_pred             eEEEEEcCCCCCeEEEEE-----cC-CCCEEEEEEcCCeEEEEEccCC-------ceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          172 KKLYEFKGWGSSISSCVS-----SP-ALDVVAVGCSDGKIHVHNVRYD-------EELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~-----sp-~~~~la~g~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      ++...+++|.+.|++++|     ++ ++++|++|+.|++|++||+.++       .....+.. |...|.+++|+|++. 
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~-   89 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENC-   89 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTT-
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCC-
Confidence            566788999999999999     76 8999999999999999999754       23444544 588999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      ++++|+.|++|++||+++++.+..+. +|...|.+++|+|++++|++++.|++|++||+...  .........+|...|.
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceee
Confidence            99999999999999999999998888 89999999999999999999999999999998632  1111122247889999


Q ss_pred             eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +++|+|++...                                                                     
T Consensus       167 ~~~~~~~~~~~---------------------------------------------------------------------  177 (343)
T 2xzm_R          167 CVRYSPIMKSA---------------------------------------------------------------------  177 (343)
T ss_dssp             EEEECCCCCSC---------------------------------------------------------------------
T ss_pred             eeeeccccccc---------------------------------------------------------------------
Confidence            99999875200                                                                     


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                                .     .+.|.+.++++++.||.|++||. .+.....+        .+|...|.
T Consensus       178 --------------------------~-----~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~--------~~h~~~v~  217 (343)
T 2xzm_R          178 --------------------------N-----KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF--------KAHESNVN  217 (343)
T ss_dssp             --------------------------S-----CCCSSCCEEEEEETTSEEEEEET-TTEEEEEE--------ECCSSCEE
T ss_pred             --------------------------c-----ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE--------cCccccce
Confidence                                      0     01223445566666666666662 22222233        38999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE--Eee-
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFE-  554 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~--~~~-  554 (764)
                      +++|+|++++|++++.||.|++||+. .......+.....|.+++|+|++.+++++ .|+.|++||+.+++...  .+. 
T Consensus       218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence            99999999999999999999999994 45556666667889999999999988765 57789999998876533  443 


Q ss_pred             ----------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          555 ----------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       555 ----------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                                +|...|++++|+|+|++|++|+.||+|++|+++++.
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence                      788899999999999999999999999999988754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=362.47  Aligned_cols=342  Identities=13%  Similarity=0.163  Sum_probs=283.4

Q ss_pred             CCEEEEEEeeCCCCEEEEE----------eCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270          225 GAVTALAFSSDGQPLLASG----------ASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg----------~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~  291 (764)
                      ..|.+++|+|+++.+|++|          +.|+.|++||+.++.   .+..+  .|...|.+++|+|++++|++++.|+.
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccCCe
Confidence            3688999999998799999          889999999999885   33333  58899999999999999999999999


Q ss_pred             EEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  370 (764)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (764)
                      |++|++.........+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+.........                
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------------  154 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT----------------  154 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC----------------
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc----------------
Confidence            9999988743333577788899999999999998 89999999999999999876541110000                


Q ss_pred             hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEE
Q 004270          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIE  449 (764)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~  449 (764)
                                                                 ...+.....|...+.+++|+|+ ++++++++.+|.|+
T Consensus       155 -------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          155 -------------------------------------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS  191 (416)
T ss_dssp             -------------------------------------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred             -------------------------------------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence                                                       0001112345688999999999 78999999999999


Q ss_pred             EEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCC---eEEEEECCCC-CeeeeEe--cCcceEEEE
Q 004270          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG---DIKVWDFKGR-DLKSRWE--VGCSLVKIV  522 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg---~v~iwd~~~~-~~~~~~~--~~~~i~~~~  522 (764)
                      +||+.++.....+.....  ..+|...|.+++|+|++ .++++++.|+   .|++||+.++ +....+.  +...+.+++
T Consensus       192 iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~  269 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSP--NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD  269 (416)
T ss_dssp             EEETTTTEEEEEECCCCC--SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred             EEECCCCCcceEEecccc--ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence            999999888777652100  11337899999999997 6899999998   9999999986 5666666  558999999


Q ss_pred             Eee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEe----
Q 004270          523 YHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH----  596 (764)
Q Consensus       523 ~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~----  596 (764)
                      |+| ++.+|++++.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++++.|+.|++||+.++.......    
T Consensus       270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  349 (416)
T 2pm9_A          270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET  349 (416)
T ss_dssp             ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred             eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence            999 99999999999999999999999999999999999999999999 899999999999999998765332110    


Q ss_pred             --------------------------------eCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          597 --------------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       597 --------------------------------~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                                                      +..++.+++|+|+|++||+++.|+ .|+||++.+
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~-~v~~w~~~~  414 (416)
T 2pm9_A          350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK-GVSITNPKI  414 (416)
T ss_dssp             -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS-CBCCBCCCC
T ss_pred             cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC-eEEEEEecc
Confidence                                            123477999999999999999998 599999763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.8e-40  Score=338.37  Aligned_cols=323  Identities=15%  Similarity=0.220  Sum_probs=274.0

Q ss_pred             CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (764)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (764)
                      +...+..++++|++  +.++++..++.+..|+...........+|...|.+++|+|++++|++++ ||.|++||+.+++.
T Consensus         8 ~~~~v~~~~~s~dg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A            8 GSKPAYSFHVTADG--QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             EEEECCEEEECSSS--CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred             cCCceeEEEECCCC--CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence            34556788999999  7888888888787777666555555568999999999999999999999 99999999987753


Q ss_pred             ---EEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          216 ---LVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       216 ---~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                         +..+. ..+...|.+++|+|+++ +|++++.||.|++||+.+++  ....+. .|...|.+++|+|+++++++++.|
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCC
Confidence               33333 14578999999999998 89999999999999999887  455555 789999999999999999999999


Q ss_pred             CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      +.|++|++...    ..+..+.+|...+.+++|+|+++++++++.|+.+++||+.+.+..                    
T Consensus       163 g~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------------------  218 (337)
T 1gxr_A          163 GNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL--------------------  218 (337)
T ss_dssp             SCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------------
T ss_pred             CcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE--------------------
Confidence            99999998765    567777789999999999999999999999999999987543211                    


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (337)
T 1gxr_A          219 --------------------------------------------------------------------------------  218 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCE
Q 004270          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL  529 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~  529 (764)
                                ..         ..|...+.+++|+|+++++++++.|+.|++||+.+++......+...+.+++|+|++++
T Consensus       219 ----------~~---------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          219 ----------QQ---------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             ----------EE---------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred             ----------ee---------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence                      11         13556788899999999999999999999999998887666566689999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      |++++.|+.|++||+.+++.+... .|...|++++|+|++++|++++.||.|++|++.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            999999999999999999888554 488999999999999999999999999999963

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.3e-41  Score=351.15  Aligned_cols=318  Identities=18%  Similarity=0.313  Sum_probs=265.8

Q ss_pred             EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 004270          115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD  194 (764)
Q Consensus       115 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~  194 (764)
                      +..|+......    ..++..|...+..+.|+|++  ++|++|+.||+|++||+.+++.+..++.|...|.+++|+|+++
T Consensus        48 ~~~~~~~~~~~----~~~l~gH~~~V~~~~~sp~~--~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~  121 (380)
T 3iz6_a           48 AVSFNPTDLVC----CRTLQGHSGKVYSLDWTPEK--NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ  121 (380)
T ss_dssp             CCCCCCCCCEE----EEEECCCSSCEEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS
T ss_pred             ccccccceeEE----eecccccccEEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC
Confidence            44455554444    67788899999999999999  7899999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCeEEEEEccCCc-------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee---
Q 004270          195 VVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR---  264 (764)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---  264 (764)
                      +|++|+.|+.+++||+.+..       ....+ .+|.+.|.++.|+|++...|++|+.|++|++||+.+++.+..+.   
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            99999999999999987532       12223 34588999999999876589999999999999999998877662   


Q ss_pred             -cccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          265 -EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       265 -~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                       .+|...|.+++|++ ++.+|++|+.|++|++||+....   ..+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd  277 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD  277 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence             37999999999987 78899999999999999987432   45667789999999999999999999999999999999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      +.++.....+....                                                             .....
T Consensus       278 ~~~~~~~~~~~~~~-------------------------------------------------------------~~~~~  296 (380)
T 3iz6_a          278 MRTGHQLQVYNREP-------------------------------------------------------------DRNDN  296 (380)
T ss_dssp             TTTTEEEEEECCCC-------------------------------------------------------------SSSCC
T ss_pred             CCCCcEEEEecccc-------------------------------------------------------------ccccc
Confidence            98765433321100                                                             00011


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      +...+.+++|+|+|+++++|+.||.|++||+..+.....+...    ..+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            2245889999999999999999999999999888776655211    137999999999999999999999999999999


Q ss_pred             CCCCC
Q 004270          503 FKGRD  507 (764)
Q Consensus       503 ~~~~~  507 (764)
                      +...+
T Consensus       373 ~~~~~  377 (380)
T 3iz6_a          373 FSGHR  377 (380)
T ss_dssp             CCSSS
T ss_pred             cCCCc
Confidence            98664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-39  Score=330.22  Aligned_cols=298  Identities=16%  Similarity=0.260  Sum_probs=253.6

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-----KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      ..++..|...+..++++|++. +.|++|+.|++|++||+.+     +.++..+++|...|.+++|+|++++|++|+.|++
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~-~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEccccceEEEEEccCCCc-cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            567788999999999999653 6899999999999999863     4567889999999999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC-----
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----  279 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~-----  279 (764)
                      |++||+.+++.+..+..+ ...|.+++|+|++. +|++|+.|+.|++||++. +.+..+. +|...|.++.|+|.     
T Consensus        89 v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGH-KSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             EEEEETTTTEEEEEEECC-SSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC-----
T ss_pred             EEEEECCCCCeeEEEccC-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCCCCC
Confidence            999999999999988765 88999999999998 999999999999999964 4556666 89999999999985     


Q ss_pred             -CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270          280 -EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  358 (764)
Q Consensus       280 -~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  358 (764)
                       +..+++++.|+.|++||+...    .....+.+|...|.+++|+|++++|++++.|+.|++||+.+.+....+.     
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----  235 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-----  235 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-----
T ss_pred             CccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----
Confidence             448999999999999998765    5667778999999999999999999999999999999987654332221     


Q ss_pred             HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  438 (764)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  438 (764)
                                                                                      ....+.+++|+|++.+
T Consensus       236 ----------------------------------------------------------------~~~~v~~~~~sp~~~~  251 (319)
T 3frx_A          236 ----------------------------------------------------------------AQDEVFSLAFSPNRYW  251 (319)
T ss_dssp             ----------------------------------------------------------------CCSCEEEEEECSSSSE
T ss_pred             ----------------------------------------------------------------CCCcEEEEEEcCCCCE
Confidence                                                                            1267899999999999


Q ss_pred             EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270          439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  506 (764)
                      +++++.+ .+++|++..+.....+..........|...+.+++|+|+|++|++++.||.|++||+.++
T Consensus       252 la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          252 LAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            9988765 499999987766555432222222356788999999999999999999999999998654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-41  Score=360.17  Aligned_cols=334  Identities=12%  Similarity=0.179  Sum_probs=277.8

Q ss_pred             CCeEEEEEcCCCC-EEEEE----------EcCCeEEEEEccCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          182 SSISSCVSSPALD-VVAVG----------CSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       182 ~~i~~~~~sp~~~-~la~g----------~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      ..|.+++|+|+++ +|++|          +.||.|++||+.+++   .+..+  .|...|.+++|+|+++ +|++|+.||
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg   89 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNG   89 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCC
Confidence            3678899999987 99999          889999999999876   33333  3478999999999999 899999999


Q ss_pred             cEEEEECCC----ceeeeeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCCCC-----CceeeEeccCCCCCC
Q 004270          248 VISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG-----DPRLLRFRSGHSAPP  317 (764)
Q Consensus       248 ~i~iwd~~~----~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~~~~~~h~~~v  317 (764)
                      .|++||+.+    .+....+. +|...|.+++|+|+ +.+|++++.|+.|++||+.....     .........+|...|
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             eEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            999999988    34666666 89999999999998 88999999999999999877641     111223446899999


Q ss_pred             eeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      .+++|+|+ +.++++++.|+.|++||+.+.+....+...                                         
T Consensus       169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------------------------------------  207 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT-----------------------------------------  207 (416)
T ss_dssp             CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC-----------------------------------------
T ss_pred             eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc-----------------------------------------
Confidence            99999998 789999999999999998765443332110                                         


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---cEEEEECcCCc-ccceecCccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---WIERFNLQSGI-SRGSYLDMSERSNY  471 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g---~i~i~~~~~~~-~~~~~~~~~~~~~~  471 (764)
                                           ....++...+.+++|+|++ .++++++.++   .|++||+.++. ....+        .
T Consensus       208 ---------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------~  258 (416)
T 2pm9_A          208 ---------------------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL--------N  258 (416)
T ss_dssp             ---------------------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC--------C
T ss_pred             ---------------------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe--------e
Confidence                                 0011235889999999997 6899999998   99999999864 33333        3


Q ss_pred             -cccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEEccCC
Q 004270          472 -AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL  547 (764)
Q Consensus       472 -~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~  547 (764)
                       +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..+ ..+.+++|+|++ .+|++++.|+.|++||+.+.
T Consensus       259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence             7999999999999 8999999999999999999999999988765 789999999999 89999999999999999876


Q ss_pred             eEEEEee-----------------------------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270          548 RMVRKFE-----------------------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       548 ~~~~~~~-----------------------------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                      +......                                   .|..++++++|+|||++|++++.|++|+||++.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            5322211                                   16778889999999999999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-39  Score=345.82  Aligned_cols=339  Identities=14%  Similarity=0.240  Sum_probs=280.6

Q ss_pred             EEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270           98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF  177 (764)
Q Consensus        98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  177 (764)
                      ++.++|++|++++.||.|++||+.+.+.    ...+..+ ......+++|++  ++|++|+.||.|++||+.+++....+
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~-~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDG----SKMLKRA-DYTAVDTAKLQM--RRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEET----TTTSCSC-CEEEEEEECSSS--CEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccce----eeEEecC-CceEEEEEecCC--CEEEEEECCCCEEEEeCCCcceeeec
Confidence            4556899999999999999999988776    2233323 444555688998  89999999999999999999999988


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +|++++.||.|++||++++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRGR-NVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCC
Confidence            999999999999999999999999999999999999999888765 88999999999998 9999999999999999999


Q ss_pred             eeeeeeec--ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270          258 RLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       258 ~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (764)
                      +.+..+..  .|...|.+++|.+++...                         ....+...+.+++|+|++++|++++.|
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcce-------------------------eeecccCcccceEEcCCCCEEEEEcCC
Confidence            98888762  366788888887764321                         123466778888999999999999999


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                      |.|++||+.+....                                                                  
T Consensus       269 g~i~i~d~~~~~~~------------------------------------------------------------------  282 (420)
T 3vl1_A          269 GVITVHNVFSKEQT------------------------------------------------------------------  282 (420)
T ss_dssp             SCEEEEETTTCCEE------------------------------------------------------------------
T ss_pred             CeEEEEECCCCcee------------------------------------------------------------------
Confidence            99999987543211                                                                  


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeC
Q 004270          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGY  494 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~  494 (764)
                                                                  ..+.       ..|...|.+++|+|+++ +|++++.
T Consensus       283 --------------------------------------------~~~~-------~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          283 --------------------------------------------IQLP-------SKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             --------------------------------------------EEEC-------CTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             --------------------------------------------EEcc-------cccCCCceeEEEeCCCCCEEEEEeC
Confidence                                                        1111       26788999999999998 9999999


Q ss_pred             CCeEEEEECCCCCe-eeeEec-C-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---------eEEEEeecCCCCeeE
Q 004270          495 HGDIKVWDFKGRDL-KSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------RMVRKFEGHTDRITD  562 (764)
Q Consensus       495 dg~v~iwd~~~~~~-~~~~~~-~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~---------~~~~~~~~h~~~i~~  562 (764)
                      ||.|++||+.+++. +..+.. + ..+.++ +++++++|++++.|+.|++||+...         .....+.+|.+.|.+
T Consensus       312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  390 (420)
T 3vl1_A          312 NGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQ  390 (420)
T ss_dssp             TSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCE
T ss_pred             CCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEE
Confidence            99999999998754 666654 3 667777 5568899999999999999998763         223346678899999


Q ss_pred             EEEcCCCc---EEEEEeCCCcEEEEEcCc
Q 004270          563 FCFSEDGK---WLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       563 l~~s~dg~---~l~s~s~dg~i~iwd~~~  588 (764)
                      ++|+|+++   .|++++.+|.+.+|++++
T Consensus       391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          391 FCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            99999999   778888899999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.1e-39  Score=331.20  Aligned_cols=297  Identities=21%  Similarity=0.353  Sum_probs=252.7

Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCc-----eEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          169 STKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE-----ELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       169 ~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      ++.++..++++|.+.|++++|+|+ +++||+|+.||+|+|||+.+++     ....+.. |...|.+++|+|+++ +|++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~-~l~s  103 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQ-FALS  103 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSS-EEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCC-EEEE
Confidence            344567789999999999999998 6899999999999999998654     3344444 588999999999999 9999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      |+.|+.|++|+........... .+...+..+.+++++++|++++.|+.+++|+....   ........+|...+..++|
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~---~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSSSCSSCEEEEEE
T ss_pred             EcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCC---ceEEEEeccccCcccceEE
Confidence            9999999999999998888777 78889999999999999999999999999986543   2445556789999999999


Q ss_pred             ecCC--CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       323 ~~~~--~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      ++++  ..+++++.|+.|++||+.+..                                                     
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~-----------------------------------------------------  206 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCK-----------------------------------------------------  206 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTE-----------------------------------------------------
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCc-----------------------------------------------------
Confidence            8754  567788888888888764322                                                     


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                                                                               ....+        .+|.+.|+++
T Consensus       207 ---------------------------------------------------------~~~~~--------~~h~~~v~~~  221 (340)
T 4aow_A          207 ---------------------------------------------------------LKTNH--------IGHTGYLNTV  221 (340)
T ss_dssp             ---------------------------------------------------------EEEEE--------CCCSSCEEEE
T ss_pred             ---------------------------------------------------------eeeEe--------cCCCCcEEEE
Confidence                                                                     11222        2789999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee------
Q 004270          481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------  554 (764)
Q Consensus       481 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~------  554 (764)
                      +|+|++++|++++.||.|++||+.+.+.+..+..+..+.+++++|++.++ +++.|+.|++||++++..+..+.      
T Consensus       222 ~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  300 (340)
T 4aow_A          222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIST  300 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC----
T ss_pred             EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceee
Confidence            99999999999999999999999999999999999999999999987655 55679999999999988776654      


Q ss_pred             ---cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          555 ---GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       555 ---~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                         +|...|++++|+|||++|++|+.||+|+|||+.+|.
T Consensus       301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence               688999999999999999999999999999999885

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-39  Score=330.98  Aligned_cols=324  Identities=15%  Similarity=0.243  Sum_probs=250.1

Q ss_pred             eeeEecCCc-cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE--E-EcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270          130 VGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--E-FKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (764)
Q Consensus       130 ~~~~~~~~~-~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-~~~h~~~i~~~~~sp~~~~la~g~~dg~i  205 (764)
                      +.++..|.. .+..++|+|++  ++|++|+.|++|++||+.+++...  . ..+|...|.+++|+|++++|++|+.|+.|
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g--~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAG--TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTS--SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeecCCCCCcEEEEEECCCC--CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            566666766 77889999999  789999999999999998886443  2 36899999999999999999999999999


Q ss_pred             EEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCC
Q 004270          206 HVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANE  280 (764)
Q Consensus       206 ~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~  280 (764)
                      ++|++.++.  .+..+.. |...|.+++|+|+++ +|++|+.|+.|++||+.++.   .+..+. +|...|.+++|+|++
T Consensus        86 ~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEECCC-EEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSS
T ss_pred             EEEEccCCCeEEEEEccC-CCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCC
Confidence            999998774  4555554 488999999999999 99999999999999998763   344555 899999999999999


Q ss_pred             CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  360 (764)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  360 (764)
                      ++|++++.|++|++|+.....  ......+.+|...|.+++|+|++++|++++.|++|++|+.........+...     
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~-----  235 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS-----  235 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----
T ss_pred             CEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee-----
Confidence            999999999999999987542  2345677899999999999999999999999999999997543322111000     


Q ss_pred             HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270          361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  440 (764)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  440 (764)
                                                          ....   .|.        ........|...|.+++|+|++..++
T Consensus       236 ------------------------------------~~~~---~~~--------~~~~~~~~h~~~v~~v~~~~~~~~l~  268 (345)
T 3fm0_A          236 ------------------------------------GSDP---SWK--------CICTLSGFHSRTIYDIAWCQLTGALA  268 (345)
T ss_dssp             ---------------------------------------C---EEE--------EEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred             ------------------------------------ccCC---ccc--------eeEEecCCCCCcEEEEEEecCCCEEE
Confidence                                                0000   000        00011113567899999999999999


Q ss_pred             EEecCCcEEEEECcCCcccceecC-ccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          441 LGTAGGWIERFNLQSGISRGSYLD-MSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       441 ~g~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                      +++.|+.|++|+...+........ .......+|...|++++|+|++ .+|++++.||+|++|++.+++.....
T Consensus       269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            999999999999876542211000 0001124799999999999988 59999999999999999987765443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-38  Score=335.25  Aligned_cols=290  Identities=16%  Similarity=0.312  Sum_probs=244.8

Q ss_pred             CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc------------------cCeeEEEEecCCCEEE
Q 004270          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------------------NAIISLHFFANEPVLM  284 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~------------------~~v~~l~~~~~~~~l~  284 (764)
                      |.+.|.+++|+|||+ +|++|+ ++.+++|++.+++.+..+. .|.                  ..|.+++|+|++++|+
T Consensus        63 h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           63 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            588999999999999 888876 7899999999998877765 332                  2489999999999999


Q ss_pred             EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                      +++.|+.|++||+...    +.+..+.+|...|.+++|+|++++|++++.|+++++||+.++.....+.           
T Consensus       140 s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----------  204 (393)
T 1erj_A          140 TGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-----------  204 (393)
T ss_dssp             EEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------
T ss_pred             EEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-----------
Confidence            9999999999998765    6777888999999999999999999999999999999987654322211           


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEe
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGT  443 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~  443 (764)
                                                                                +...+.+++++| +|+++++|+
T Consensus       205 ----------------------------------------------------------~~~~v~~~~~~~~~~~~l~~~s  226 (393)
T 1erj_A          205 ----------------------------------------------------------IEDGVTTVAVSPGDGKYIAAGS  226 (393)
T ss_dssp             ----------------------------------------------------------CSSCEEEEEECSTTCCEEEEEE
T ss_pred             ----------------------------------------------------------cCCCcEEEEEECCCCCEEEEEc
Confidence                                                                      125688999999 899999999


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC------------eeee
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LKSR  511 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~~~  511 (764)
                      .||.|++||+.++.....+.... ....+|...|.+++|+|++++|++++.|+.|++||+.+..            +...
T Consensus       227 ~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1erj_A          227 LDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  305 (393)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             CCCcEEEEECCCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence            99999999999987766552111 1123799999999999999999999999999999997642            3334


Q ss_pred             Eec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC------CCcEEEEEeCCCcEEEE
Q 004270          512 WEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE------DGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       512 ~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~------dg~~l~s~s~dg~i~iw  584 (764)
                      +.. ...|.+++++|++.+|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|++      ++++|++|+.||+|++|
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence            443 47899999999999999999999999999999999999999999999999986      68999999999999999


Q ss_pred             EcCcc
Q 004270          585 DVILA  589 (764)
Q Consensus       585 d~~~~  589 (764)
                      ++...
T Consensus       386 ~~~~~  390 (393)
T 1erj_A          386 KYKKI  390 (393)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            98653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-38  Score=324.66  Aligned_cols=290  Identities=20%  Similarity=0.358  Sum_probs=254.6

Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      .....+. +|...|++++|+|++++|++++.|+.|++|++...    .....+.+|...|.+++|+|++++|++++.|+.
T Consensus        14 ~~~~~~~-gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           14 ALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeEEEEc-ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence            4445555 89999999999999999999999999999987655    466777899999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |++||+.+++....+                                                                 
T Consensus        89 i~vwd~~~~~~~~~~-----------------------------------------------------------------  103 (312)
T 4ery_A           89 LKIWDVSSGKCLKTL-----------------------------------------------------------------  103 (312)
T ss_dssp             EEEEETTTCCEEEEE-----------------------------------------------------------------
T ss_pred             EEEEECCCCcEEEEE-----------------------------------------------------------------
Confidence            999998765432221                                                                 


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                         ..|...+.+++|+|+++++++|+.||.|++||+.++.....+.        .|...|.+++|+|+++++++++.||.
T Consensus       104 ---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A          104 ---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------AHSDPVSAVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             ---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--------CCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence               1355789999999999999999999999999999998877764        89999999999999999999999999


Q ss_pred             EEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE--EEE-cCCCcEE
Q 004270          498 IKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD--FCF-SEDGKWL  572 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~--l~~-s~dg~~l  572 (764)
                      |++||+.+++.+..+...  .++..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+..  ..+ .+++++|
T Consensus       173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
T 4ery_A          173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI  252 (312)
T ss_dssp             EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred             EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence            999999999888776433  67999999999999999999999999999999999999999866433  233 4688999


Q ss_pred             EEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEE--eCCCeEEEEecc
Q 004270          573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH--VDQNGVYLWVNR  629 (764)
Q Consensus       573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~--~d~~~i~lW~~~  629 (764)
                      ++++.||.|++||+.+++++..+..|.. |.+++|+|++.+|++++  .|+ .|++|+.+
T Consensus       253 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~-~i~~W~~d  311 (312)
T 4ery_A          253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK-TIKLWKSD  311 (312)
T ss_dssp             EECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC-CEEEEECC
T ss_pred             EEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc-cEEEecCC
Confidence            9999999999999999999999987654 99999999999999998  466 69999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-40  Score=354.37  Aligned_cols=343  Identities=15%  Similarity=0.158  Sum_probs=281.9

Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~  262 (764)
                      .+++++|+|++++|++|+.||.|++||+.+++....+..+  ..+....|+++++ +|++|+.||.|++||+.+++....
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeee
Confidence            3457899999999999999999999999887665544432  4455567899998 999999999999999999988877


Q ss_pred             eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +. +|.+.|.+++|+|++++|++++.|+.|++||++..    ..+..+.+|...|.+++|+|++++|++++.|+.+++||
T Consensus       135 ~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          135 DQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             TT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            76 89999999999999999999999999999998766    45566679999999999999999999999999999999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      +.+++....+..                                                                 ...
T Consensus       210 ~~~~~~~~~~~~-----------------------------------------------------------------~~~  224 (420)
T 3vl1_A          210 CGTGTTIHTFNR-----------------------------------------------------------------KEN  224 (420)
T ss_dssp             TTTTEEEEEECB-----------------------------------------------------------------TTB
T ss_pred             CCCCceeEEeec-----------------------------------------------------------------CCC
Confidence            877654433221                                                                 112


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      +...+.++++.+.+...                     ..        ..|...+.+++|+|++++|++++.||.|++||
T Consensus       225 ~~~~v~~~~~~~~~~~~---------------------~~--------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          225 PHDGVNSIALFVGTDRQ---------------------LH--------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             TTCCEEEEEEEECCCSS---------------------CG--------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             CCCCccEEEEecCCcce---------------------ee--------ecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence            34677777777654321                     00        25677889999999999999999999999999


Q ss_pred             CCCCCeeeeEec--CcceEEEEEeecCC-EEEEEeCCCeEEEEEccCCe-EEEEeec-CCCCeeEEEEcCCCcEEEEEeC
Q 004270          503 FKGRDLKSRWEV--GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALR-MVRKFEG-HTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       503 ~~~~~~~~~~~~--~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~~-~~~~~~~-h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +.+++....+..  ...+.+++|+|++. +|++|+.||.|++||+.+++ ++..+.+ |...|+++.| +++++|++++.
T Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~  354 (420)
T 3vl1_A          276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF  354 (420)
T ss_dssp             TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT
T ss_pred             CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC
Confidence            999988777754  37899999999999 99999999999999999875 4677776 6677888855 57899999999


Q ss_pred             CCcEEEEEcCccc----------eEEEEeeCCceEEEEEcCCCC---eEEEEEeCCCeEEEEecc
Q 004270          578 DGSLRIWDVILAR----------QIDAIHVDVSITALSLSPNMD---VLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       578 dg~i~iwd~~~~~----------~~~~~~~~~~v~~l~~sp~g~---~lat~~~d~~~i~lW~~~  629 (764)
                      |+.|++||+.+..          ..........+.+++|+|++.   .|++++.++ .+.+|++.
T Consensus       355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g-~~~~~~~~  418 (420)
T 3vl1_A          355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN-FCALYNLS  418 (420)
T ss_dssp             TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT-EEEEEESC
T ss_pred             CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc-eEEEEecc
Confidence            9999999998732          112223345699999999999   777777787 59999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-38  Score=321.97  Aligned_cols=254  Identities=16%  Similarity=0.202  Sum_probs=208.0

Q ss_pred             ceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeE-ec-CCccccEEEEeCCCCCCEEEEEeCCC
Q 004270           84 HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHV-KL-DDKFTPTCIMHPDTYLNKVIVGSQEG  161 (764)
Q Consensus        84 ~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (764)
                      +.+.++.+|.++|.++.+++++|++++.|++|++||+..+...  ....+ .. |...+..++|+|++  +.|++|+.|+
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~--~~las~s~D~   80 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT--LIDVLDETAHKKAIRSVAWRPHT--SLLAAGSFDS   80 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE--EEEEECTTCCCSCEEEEEECTTS--SEEEEEETTS
T ss_pred             ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE--EEEEEecCCccCCEEEEEECCCC--CEEEEEeCCC
Confidence            3466799999999999999889999999999999999875421  13333 23 67778889999999  8999999999


Q ss_pred             cEEEEeCC-------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC----ceEEEEeccCCCCEEEE
Q 004270          162 SLQLWNIS-------TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----EELVTFTHSMRGAVTAL  230 (764)
Q Consensus       162 ~i~iwd~~-------~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l  230 (764)
                      +|++||+.       +.+.+..+.+|...|.+++|+|++++||+|+.|+.|++||+...    +.+..+.. |...|.++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v  159 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHV  159 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEE
Confidence            99999984       34678889999999999999999999999999999999999532    34455554 48899999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCC---
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGD---  303 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~---  303 (764)
                      +|+|++. +|++|+.|+.|++||..++  +++..+. +|.+.|.+++|+|+  +..|++++.|++|++|++......   
T Consensus       160 ~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          160 IWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            9999998 9999999999999998766  5667777 89999999999998  678999999999999998754221   


Q ss_pred             -ceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          304 -PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       304 -~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                       ......+.+ |...|.+++|++++ +|++++.||.|++|+...
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence             123344444 89999999999665 899999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.1e-38  Score=334.92  Aligned_cols=323  Identities=18%  Similarity=0.320  Sum_probs=282.4

Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ..+....+.+|.+.+.. ++++++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++|+  +. ++++|+.||.|
T Consensus       107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~-~l~s~~~dg~i  181 (445)
T 2ovr_B          107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMR--DN-IIISGSTDRTL  181 (445)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEE--TT-EEEEEETTSCE
T ss_pred             CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC-CCCEEEEEec--CC-EEEEEeCCCeE
Confidence            34456778999887643 35557899999999999999999999999888765 8899999998  44 89999999999


Q ss_pred             EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      ++||+.+++.+..+. +|...|.++.|+  ++.+++++.|+.|++||+...    ..+..+.+|...+.++++  +++++
T Consensus       182 ~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l  252 (445)
T 2ovr_B          182 KVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQY--DGRRV  252 (445)
T ss_dssp             EEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC----CEEEEEECCSSCEEEEEE--CSSCE
T ss_pred             EEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC----cEEEEEcCCcccEEEEEE--CCCEE
Confidence            999999999999988 899999999996  568999999999999998765    567777899999999999  78899


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++++.||.|++||+.++.....+                                                         
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~---------------------------------------------------------  275 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTL---------------------------------------------------------  275 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEE---------------------------------------------------------
T ss_pred             EEEcCCCEEEEEECCCCcEeEEe---------------------------------------------------------
Confidence            99999999999998765433221                                                         


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                                 ..|...+.++++  +++++++|+.||.|++||+.++.....+.        +|...+.++.++  ++++
T Consensus       276 -----------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~--~~~l  332 (445)
T 2ovr_B          276 -----------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--------GHQSLTSGMELK--DNIL  332 (445)
T ss_dssp             -----------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSCEEEEEEE--TTEE
T ss_pred             -----------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--------CCcccEEEEEEe--CCEE
Confidence                       134578888888  89999999999999999999998887775        899999988885  6699


Q ss_pred             EEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-----ecCCCCe
Q 004270          490 ISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-----EGHTDRI  560 (764)
Q Consensus       490 ~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-----~~h~~~i  560 (764)
                      ++++.||.|++||+.+++.+..+..    ...|.+++++  ++++++|+.||.|++||+.+++.+..+     .+|.+.|
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v  410 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  410 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceE
Confidence            9999999999999999999988874    4789999985  689999999999999999999999888     4788999


Q ss_pred             eEEEEcCCCcEEEEEeCCCc----EEEEEcCc
Q 004270          561 TDFCFSEDGKWLLSSGMDGS----LRIWDVIL  588 (764)
Q Consensus       561 ~~l~~s~dg~~l~s~s~dg~----i~iwd~~~  588 (764)
                      ++++|+|++.+|++++.||+    |.|||+..
T Consensus       411 ~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          411 WRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99999999999999999998    99999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-37  Score=327.63  Aligned_cols=318  Identities=14%  Similarity=0.233  Sum_probs=253.9

Q ss_pred             cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-----------
Q 004270          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS-----------  182 (764)
Q Consensus       114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-----------  182 (764)
                      ...+|+..........+.....|...+..++|+|++  ++|++|+ ++.+++|++.+++.+..+..|..           
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~  117 (393)
T 1erj_A           41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS  117 (393)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC--------------
T ss_pred             eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccccc
Confidence            344666554433211122222477888899999999  7888876 68899999999999988876542           


Q ss_pred             -------CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          183 -------SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       183 -------~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                             .|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +|++|+.|+.|++||++
T Consensus       118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR  195 (393)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred             ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCC-EEEEecCCCcEEEEECC
Confidence                   3999999999999999999999999999999988888765 88999999999999 89999999999999999


Q ss_pred             CceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEec-------cCCCCCCeeEEEecCCC
Q 004270          256 KRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------SGHSAPPLCIRFYANGR  327 (764)
Q Consensus       256 ~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-------~~h~~~v~~i~~~~~~~  327 (764)
                      +++....+.  +...+.+++|+| ++.+|++++.|+.|++||+....    .+..+       .+|...|.+++|+|+++
T Consensus       196 ~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~  269 (393)
T 1erj_A          196 TGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQ  269 (393)
T ss_dssp             TTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             CCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECCCCC
Confidence            998887775  677899999999 89999999999999999987652    33322       57999999999999999


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      +|++++.|++|++||+.............                                         .         
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-----------------------------------------~---------  299 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPN-----------------------------------------S---------  299 (393)
T ss_dssp             EEEEEETTSEEEEEEC----------------------------------------------------------------
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCC-----------------------------------------C---------
Confidence            99999999999999987543221110000                                         0         


Q ss_pred             cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC---
Q 004270          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---  484 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---  484 (764)
                            ........+|...+.+++++|++.++++|+.||.|++||..++.....+.        +|...|.+++|++   
T Consensus       300 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--------~h~~~v~~v~~~~~~~  365 (393)
T 1erj_A          300 ------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVANGSS  365 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECSSCT
T ss_pred             ------CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--------CCCCCEEEEEecCCcC
Confidence                  00000112466889999999999999999999999999999998887775        8999999999986   


Q ss_pred             ---CCCEEEEEeCCCeEEEEECCCC
Q 004270          485 ---TNTLMISAGYHGDIKVWDFKGR  506 (764)
Q Consensus       485 ---~~~~l~s~~~dg~v~iwd~~~~  506 (764)
                         ++++|++++.||+|++|++...
T Consensus       366 ~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          366 LGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             cCCCCCEEEEECCCCcEEECccccc
Confidence               6789999999999999997643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.9e-38  Score=321.69  Aligned_cols=304  Identities=17%  Similarity=0.243  Sum_probs=244.9

Q ss_pred             EEEecccccceEEEEE--------eCCEEEEEecCCcEEEEEccCCccc---ccceeeEecCCccccEEEEeCCCCCCEE
Q 004270           86 VATWSRHSAKVNLLLL--------FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKV  154 (764)
Q Consensus        86 ~~~~~~h~~~v~~l~~--------~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l  154 (764)
                      ...+.||.+.|+++.+        ++++|++++.|++|++||+.+.+..   ..+...+..|...+..++++|++  .++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~l   91 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CFA   91 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CEE
Confidence            4568999999999987        7889999999999999999865431   22355677788888999999999  799


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEE
Q 004270          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAF  232 (764)
Q Consensus       155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~f  232 (764)
                      ++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.. .......  ..|...|.+++|
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            9999999999999999999999999999999999999999999999999999999983 3333332  245788999999


Q ss_pred             eeCCC---------CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          233 SSDGQ---------PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       233 s~d~~---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      +|++.         .++++++.||.|++||. ..+....+. +|...|.+++|+|++++|++++.|+.|++||+..... 
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-  247 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-  247 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-
Confidence            99872         38999999999999994 556666776 8999999999999999999999999999999854322 


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc--cccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                        ....+ .+...|.+++|+|++.++++ +.|+.+++|++.+.....  .+....                         
T Consensus       248 --~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~-------------------------  298 (343)
T 2xzm_R          248 --PQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEP-------------------------  298 (343)
T ss_dssp             --CSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCS-------------------------
T ss_pred             --cceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCc-------------------------
Confidence              12222 34567999999999987765 457789999987654322  110000                         


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (764)
                                                      ........+|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       299 --------------------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          299 --------------------------------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             --------------------------------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             --------------------------------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                                            0000111245678999999999999999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.9e-37  Score=332.27  Aligned_cols=326  Identities=17%  Similarity=0.262  Sum_probs=279.6

Q ss_pred             eEEEEEcCCCCCe-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270          172 KKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (764)
Q Consensus       172 ~~~~~~~~h~~~i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~  250 (764)
                      .....+.+|...+ .++.+  ++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++|++++  ++++|+.||.|+
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~--~l~s~s~dg~i~  186 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG--ILVSGSTDRTVR  186 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSTT--EEEEEETTSCEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-CcCEEEEEEcCCC--EEEEEeCCCCEE
Confidence            4567889998885 55555  5679999999999999999999999988765 8999999999887  799999999999


Q ss_pred             EEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEEecCCCCCce-------------------eeEe
Q 004270          251 IWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWIFDTTDGDPR-------------------LLRF  309 (764)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~~  309 (764)
                      +||+++++.+..+. +|.+.|.+++|+  ++++++++++.|+.|++|++........                   ....
T Consensus       187 vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          187 VWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            99999999998888 899999999999  5778999999999999999886543211                   3556


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      ..+|...+.++  +++++++++++.|+.|++||+.+.+....+                                     
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-------------------------------------  306 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-------------------------------------  306 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE-------------------------------------
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------
Confidence            77888888877  567889999999999999998765433221                                     


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                                     .+|...+.+++++|+++++++|+.||.|++||+.++.....+.      
T Consensus       307 -------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------  349 (464)
T 3v7d_B          307 -------------------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ------  349 (464)
T ss_dssp             -------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC------
T ss_pred             -------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------
Confidence                                           1455889999999999999999999999999999999888875      


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                        +|...|.+++++  ++++++++.||.|++||+.++...........+..++++++++++++++ |+.|++||+.+++.
T Consensus       350 --~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          350 --GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             --CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             --CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence              899999999998  5799999999999999999998888888888899999999999999998 89999999999999


Q ss_pred             EEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          550 VRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       550 ~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +.. +.+|...|.+++|+ +..++++++.||.+.+|-
T Consensus       425 ~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          425 VHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            986 67899999999997 445555666777655543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=323.49  Aligned_cols=306  Identities=17%  Similarity=0.261  Sum_probs=264.7

Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      ..+.. |.+.|++++|+|+++ +|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++.|+.|++|+
T Consensus        26 ~~l~~-h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           26 IKLTG-HERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEC-CSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             EEEEE-eeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            33444 489999999999999 99999999999999999999999988 8999999999999999999999999999999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      +...    ..+..+. |...+.+++|+|+++++++++.+     +.+++||+........+.....              
T Consensus       103 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--------------  163 (369)
T 3zwl_B          103 VSNG----QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE--------------  163 (369)
T ss_dssp             TTTC----CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--------------
T ss_pred             CCCC----cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc--------------
Confidence            8765    3444444 88899999999999999999999     9999999987654433221000              


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~  451 (764)
                        .+                                      ...+. .......+.+++++|+++++++|+.+|.|++|
T Consensus       164 --~~--------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  202 (369)
T 3zwl_B          164 --EP--------------------------------------IHKII-THEGLDAATVAGWSTKGKYIIAGHKDGKISKY  202 (369)
T ss_dssp             --SC--------------------------------------SEEEE-CCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             --ce--------------------------------------eeecc-CCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence              00                                      00000 00112389999999999999999999999999


Q ss_pred             ECcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE
Q 004270          452 NLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL  530 (764)
Q Consensus       452 ~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l  530 (764)
                      |+.+ +.....+.        .|...|.+++|+|++++|++++.||.|++||+.+++.+..+.....+..++|+|+++++
T Consensus       203 d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  274 (369)
T 3zwl_B          203 DVSNNYEYVDSID--------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFI  274 (369)
T ss_dssp             ETTTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred             ECCCCcEeEEEEe--------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceE
Confidence            9998 56665554        79999999999999999999999999999999999999999988999999999999999


Q ss_pred             EEEeCCC--------------eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270          531 ATVADDL--------------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  593 (764)
Q Consensus       531 a~~~~d~--------------~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  593 (764)
                      ++++.++              .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++....
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence            9999988              89999999999999999999999999999999999999999999999998765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.4e-37  Score=327.42  Aligned_cols=329  Identities=19%  Similarity=0.313  Sum_probs=284.2

Q ss_pred             eEEEecccccc-eEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270           85 QVATWSRHSAK-VNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        85 ~~~~~~~h~~~-v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      ....+.+|.+. +.++.++|++|++++.||+|++||+.+++.    +..+..|...+..+.++  +  +.+++|+.||.|
T Consensus       110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~--~--~~l~s~~~dg~i  181 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC----LRTLVGHTGGVWSSQMR--D--NIIISGSTDRTL  181 (445)
T ss_dssp             CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----EEECCCCSSCEEEEEEE--T--TEEEEEETTSCE
T ss_pred             eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE----EEEEcCCCCCEEEEEec--C--CEEEEEeCCCeE
Confidence            35568999886 578889999999999999999999999887    67777788888888887  3  579999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      ++||+.+++.+..+.+|...|.+++++  ++.+++|+.||.|++||+.+++.+..+..+ ...|.+++|  ++. ++++|
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~~-~l~~~  255 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGR-RVVSG  255 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CSS-CEEEE
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CCC-EEEEE
Confidence            999999999999999999999999996  468999999999999999999999888765 889999999  666 89999


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      +.||.|++||+++++.+..+. +|...|.++.|  ++.++++++.|+.|++||+...    ..+..+.+|...+.++.++
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~  328 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELK  328 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEE
T ss_pred             cCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEe
Confidence            999999999999999999988 89999999999  7889999999999999998765    5677778999999888774


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                        ++++++++.||.|++||+.+++....+.                                                  
T Consensus       329 --~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------------------  356 (445)
T 2ovr_B          329 --DNILVSGNADSTVKIWDIKTGQCLQTLQ--------------------------------------------------  356 (445)
T ss_dssp             --TTEEEEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------
T ss_pred             --CCEEEEEeCCCeEEEEECCCCcEEEEEc--------------------------------------------------
Confidence              6699999999999999987654433321                                                  


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                     ....+...+.+++++  ++++++|+.||.|++||+.+++....+...   ....|.+.|.+++|+
T Consensus       357 ---------------~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~s  416 (445)
T 2ovr_B          357 ---------------GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTL---ESGGSGGVVWRIRAS  416 (445)
T ss_dssp             ---------------STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEEC---TTGGGTCEEEEEEEC
T ss_pred             ---------------cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecc---ccCCCCceEEEEEec
Confidence                           112355789999985  689999999999999999999887766211   012688999999999


Q ss_pred             CCCCEEEEEeCCCe----EEEEECCCC
Q 004270          484 STNTLMISAGYHGD----IKVWDFKGR  506 (764)
Q Consensus       484 ~~~~~l~s~~~dg~----v~iwd~~~~  506 (764)
                      |++.++++++.||+    |.+||+...
T Consensus       417 ~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          417 NTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             SSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99999999999998    999998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=336.14  Aligned_cols=360  Identities=15%  Similarity=0.207  Sum_probs=261.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEe------------ccCCC
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSMRG  225 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~~~  225 (764)
                      .++.+++|+++.++....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.            ..|..
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            345678898888888899999999999999999 99999999999999999999887655544            23588


Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEecCCCC
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~  302 (764)
                      .|.+++|+|++..+|++++.||.|++||+.+++....+.  +...+.++.|++.+   .++++++.|+.|++|++...  
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--  176 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--  176 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--
Confidence            999999999444489999999999999999999888876  78899999999854   49999999999999998765  


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                        ..+..+.+|...|.+++|+|+++ .+++++.||.|++||++...........                          
T Consensus       177 --~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------  228 (408)
T 4a11_B          177 --SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ--------------------------  228 (408)
T ss_dssp             --CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT--------------------------
T ss_pred             --ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc--------------------------
Confidence              45666778999999999999988 5889999999999998754321110000                          


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                                               +...                           ....... 
T Consensus       229 -----------------------------------------~~~~---------------------------~~~~~~~-  239 (408)
T 4a11_B          229 -----------------------------------------HNGK---------------------------KSQAVES-  239 (408)
T ss_dssp             -----------------------------------------TTTC---------------------------SCCCTTT-
T ss_pred             -----------------------------------------cccc---------------------------cceeecc-
Confidence                                                     0000                           0000011 


Q ss_pred             ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC------cceEEEEEeecCCEEEEEeC
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~  535 (764)
                             ....|...|.+++|+|++++|++++.||.|++||+.+++........      ..+........+..+++++.
T Consensus       240 -------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          240 -------ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             -------SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred             -------ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence                   11378899999999999999999999999999999988765544321      22223333344667778888


Q ss_pred             CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC-CCCeEE
Q 004270          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLA  614 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~la  614 (764)
                      ++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+.........  ..+.+ ....+.
T Consensus       313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  390 (408)
T 4a11_B          313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWS  390 (408)
T ss_dssp             TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------
T ss_pred             CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeec
Confidence            999999999999999999999999999999999999999999999999999999888766544333  23333 233344


Q ss_pred             EEEeCCCeEEEEecc
Q 004270          615 TAHVDQNGVYLWVNR  629 (764)
Q Consensus       615 t~~~d~~~i~lW~~~  629 (764)
                      +++.++ .+++|+++
T Consensus       391 ~~~~~~-~~~~W~~~  404 (408)
T 4a11_B          391 SSDEEG-GTSAWSHP  404 (408)
T ss_dssp             ---------------
T ss_pred             ccCccC-ceeecCCc
Confidence            455555 69999876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-39  Score=345.16  Aligned_cols=309  Identities=10%  Similarity=0.095  Sum_probs=230.0

Q ss_pred             EEEEEEcCCeEEEEEccCCceE----EEEeccCCCCEEEEEEeeC------CCCEEEEEeCCCcEEEEECCCceee----
Q 004270          195 VVAVGCSDGKIHVHNVRYDEEL----VTFTHSMRGAVTALAFSSD------GQPLLASGASSGVISIWNLEKRRLQ----  260 (764)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~l~fs~d------~~~~l~sg~~dg~i~iwd~~~~~~~----  260 (764)
                      .+++++.|++|+|||+.+++..    ..+. +|.+.|.+++|+|+      +. +||+++.||+|++||+.+++..    
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccc
Confidence            3444567899999999887743    2233 34788999999997      34 8999999999999999876421    


Q ss_pred             -------eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE--EEecCC-CEEE
Q 004270          261 -------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--RFYANG-RHIL  330 (764)
Q Consensus       261 -------~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i--~~~~~~-~~l~  330 (764)
                             ..+. +|...|++++|++++ .|++|+.||+|++||++...   .....+.+|...|.++  .|++++ ++|+
T Consensus       253 ~~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          253 KMCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---VPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             ECCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---SCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             eeecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---CceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                   2444 799999999999865 89999999999999987642   2344567999999999  567787 8999


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      +++.|+++++||+++.+....+..                                                        
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~--------------------------------------------------------  351 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVS--------------------------------------------------------  351 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEE--------------------------------------------------------
T ss_pred             EeccCCeEEEEECCCCCccccccc--------------------------------------------------------
Confidence            999999999999876543322110                                                        


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                          +      .....+.+++|+|+++.+++++.|+.|++||+.++.....+.        +|.+.|++++|+|++++|+
T Consensus       352 ----~------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--------gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          352 ----R------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--------SRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             ----E------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--------ECSSCEEEEECCSSCCBCE
T ss_pred             ----c------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--------cCCCceEEEEeCCCCCeEE
Confidence                0      001346789999999999999999999999999988776664        8999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCCeeeeEe------cCcceEEEEEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecCCCCeeEE
Q 004270          491 SAGYHGDIKVWDFKGRDLKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~~~~~~------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h~~~i~~l  563 (764)
                      +|+.||+|++||...+ .+....      ....+.+++|+|+++.+.. .++  +.+|+.. ++..+..+.+|...|.++
T Consensus       414 Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~gh~~~V~~V  489 (524)
T 2j04_B          414 AGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKIDAHGINITCT  489 (524)
T ss_dssp             EEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC-------------CCCSCCCE
T ss_pred             EEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeecCCCceEEEE
Confidence            9999999999998754 332221      1125678999999985532 222  3344332 467788899999999999


Q ss_pred             EEcCCCc---EEEEEeCCCcEEEEEcCc
Q 004270          564 CFSEDGK---WLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       564 ~~s~dg~---~l~s~s~dg~i~iwd~~~  588 (764)
                      +|+|++.   +||+|+.||.|+||++.-
T Consensus       490 afsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          490 KWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ECCCCCCccHHHHhhccCceEEEEEccc
Confidence            9999964   999999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.1e-36  Score=326.60  Aligned_cols=322  Identities=17%  Similarity=0.245  Sum_probs=274.3

Q ss_pred             eEEEecccccce-EEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270           85 QVATWSRHSAKV-NLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (764)
Q Consensus        85 ~~~~~~~h~~~v-~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (764)
                      ....+.+|...| .++.+++++|++++.||+|++||+.+++.    +..+..|...+..+.++|++   .+++|+.||+|
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i  185 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF----LLQLSGHDGGVWALKYAHGG---ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECSTT---EEEEEETTSCE
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcE----EEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCE
Confidence            345689998874 78889999999999999999999999887    77788888999999999887   79999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEc--CCCCEEEEEEcCCeEEEEEccCCceE----------------------EEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSS--PALDVVAVGCSDGKIHVHNVRYDEEL----------------------VTF  219 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~s--p~~~~la~g~~dg~i~iwd~~~~~~~----------------------~~~  219 (764)
                      ++||+++++.+..+.+|...|.+++|+  ++++++++|+.||.|++||+.++...                      ...
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999999999999999999999999998  57899999999999999999877643                      222


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      ...|...|.++  ++++. ++++|+.||.|++||+.+++.+..+. +|...|.+++|+|+++++++++.|+.|++||++.
T Consensus       266 ~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             ECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            33446778777  56777 99999999999999999999999988 8999999999999999999999999999999876


Q ss_pred             CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (764)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (764)
                      .    ..+..+.+|...|.+++|+  ++++++++.||.|++||+.+.......                           
T Consensus       342 ~----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------------  388 (464)
T 3v7d_B          342 G----ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------------------------  388 (464)
T ss_dssp             T----EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------------
T ss_pred             C----cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------------
Confidence            5    6788888999999999997  579999999999999998754322111                           


Q ss_pred             eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                                .+...+..++++++++++++|+ +|.|++||+.+++..
T Consensus       389 ------------------------------------------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          389 ------------------------------------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             ------------------------------------------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             ------------------------------------------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence                                                      1225667789999999999998 899999999999988


Q ss_pred             ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ..+.       ..|...|.+++|+ .+.++++++.||.+.+|
T Consensus       426 ~~~~-------~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          426 HANI-------LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ESCT-------TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             ehhh-------ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            7643       3789999999997 34555566677765544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.7e-37  Score=348.20  Aligned_cols=288  Identities=21%  Similarity=0.317  Sum_probs=249.2

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw  295 (764)
                      ..|.+.|++++|+|++..+|++|+.|++|++||+.+.     .....+. +|...|.+++|+|++++|++++.|++|++|
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            3458999999999987669999999999999999764     3345565 899999999999999999999999999999


Q ss_pred             EecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (764)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (764)
                      |+...    .....+.+|...|.+++|+|++++|++++.|++|++||+......                          
T Consensus       458 d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--------------------------  507 (694)
T 3dm0_A          458 DLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--------------------------  507 (694)
T ss_dssp             ETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--------------------------
T ss_pred             ECCCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--------------------------
Confidence            98765    567778899999999999999999999999999999996432110                          


Q ss_pred             eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEEC
Q 004270          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNL  453 (764)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~  453 (764)
                                                             .......+|...+.+++|+|++  ..+++|+.||.|++||+
T Consensus       508 ---------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          508 ---------------------------------------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             ---------------------------------------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             ---------------------------------------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence                                                   0111123566889999999987  68999999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  533 (764)
                      .++.....+.        +|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+..+.+++|+|++.+++++
T Consensus       549 ~~~~~~~~~~--------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          549 SNCKLRSTLA--------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             TTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEc--------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            9988877764        89999999999999999999999999999999999999888888999999999999888877


Q ss_pred             eCCCeEEEEEccCCeEEEEeecCC-------------------CCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          534 ADDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       534 ~~d~~i~v~d~~~~~~~~~~~~h~-------------------~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      + ++.|++||+.+++.+..+..+.                   ..+++++|||||++|++|+.||+|++||+.
T Consensus       621 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          621 T-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             E-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             c-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            6 5569999999999988776432                   137899999999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=309.25  Aligned_cols=296  Identities=18%  Similarity=0.189  Sum_probs=254.7

Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ..+..+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..+ ...|.+++|+|+++ +|++++.||.|
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i   83 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKE-LLLFGGKDTMI   83 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCC-EEEEecCCCeE
Confidence            34788899999999999999 99999999999999999999988888877765 88999999999999 99999999999


Q ss_pred             EEEECCCc---eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-C
Q 004270          250 SIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N  325 (764)
Q Consensus       250 ~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~  325 (764)
                      ++|++...   +....+. +|...|.++.|  +++++++++.|+.|++|+  .    ......+..|..++.++.|.| +
T Consensus        84 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~----~~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E----GSLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             EEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T----TEEEEEEECCSSCEEEEEEEETT
T ss_pred             EEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C----CcEEEecccCCCceeEEEEccCC
Confidence            99998765   5566666 89999999999  567999999999999998  2    256677788999999999998 8


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      ++.+++++.|+.+++||....                                                           
T Consensus       155 ~~~l~~~~~d~~i~i~d~~~~-----------------------------------------------------------  175 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQNDKV-----------------------------------------------------------  175 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTEE-----------------------------------------------------------
T ss_pred             CCEEEEEECCCCEEEEecCce-----------------------------------------------------------
Confidence            999999999999999983110                                                           


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                                                           ...+.       ..|...+.+++|+|+
T Consensus       176 -----------------------------------------------------~~~~~-------~~~~~~i~~~~~~~~  195 (313)
T 3odt_A          176 -----------------------------------------------------IKTFS-------GIHNDVVRHLAVVDD  195 (313)
T ss_dssp             -----------------------------------------------------EEEEC-------SSCSSCEEEEEEEET
T ss_pred             -----------------------------------------------------EEEEe-------ccCcccEEEEEEcCC
Confidence                                                                 00000       147888999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEE
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC  564 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~  564 (764)
                      +. +++++.||.|++||+.+++.+..+..+ ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..|...|++++
T Consensus       196 ~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~  273 (313)
T 3odt_A          196 GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD  273 (313)
T ss_dssp             TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred             Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence            88 999999999999999999999888754 889999999999 689999999999999999999999999999999999


Q ss_pred             EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       565 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                      |+|+++ +++++.||.|++||+.+++.+.......
T Consensus       274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~  307 (313)
T 3odt_A          274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKG  307 (313)
T ss_dssp             ECTTSC-EEEEETTSCEEEEESCGGGCCC------
T ss_pred             EccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence            999998 5678999999999999988776655443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.3e-37  Score=324.79  Aligned_cols=297  Identities=12%  Similarity=0.120  Sum_probs=246.0

Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc------eEEEEeccCCCCEEEEEEeeC----C---CCE
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE------ELVTFTHSMRGAVTALAFSSD----G---QPL  239 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~l~fs~d----~---~~~  239 (764)
                      ....+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++      .+..+..+ ...|.+++|+|+    +   . +
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~-~   83 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELC-L   83 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEE-E
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCcccc-E
Confidence            3456789999999999999  799999999999999999988      67777654 889999999999    8   8 8


Q ss_pred             EEEEeCCCcEEEEECCCcee-----eeeeeccc-----ccCeeEEEEe----cCCCE-EEEEcCCCcEEEEEecC-----
Q 004270          240 LASGASSGVISIWNLEKRRL-----QSVIREAH-----DNAIISLHFF----ANEPV-LMSASADNSIKMWIFDT-----  299 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~~~-----~~~~~~~h-----~~~v~~l~~~----~~~~~-l~s~~~d~~i~vw~~~~-----  299 (764)
                      |++++.||.|++||+.+++.     ...+. .|     ...|.+++|+    |++++ |++++.|+.|++|++..     
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            99999999999999998876     66776 67     5899999999    99999 99999999999999987     


Q ss_pred             -CCCCc-eeeEec-------cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270          300 -TDGDP-RLLRFR-------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  370 (764)
Q Consensus       300 -~~~~~-~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (764)
                       ..... .....+       ..|...+.+++|+|++ ++++++.|+.|++||+.+..                       
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----------------------  218 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----------------------  218 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----------------------
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----------------------
Confidence             32211 011122       3477778888888877 77777778877777764321                       


Q ss_pred             hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  450 (764)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i  450 (764)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (397)
T 1sq9_A          219 --------------------------------------------------------------------------------  218 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EECcCCcccceecCccccccccc---cCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCeeeeEec----------
Q 004270          451 FNLQSGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEV----------  514 (764)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~----------  514 (764)
                             ....+..     ..+|   ...|.+++|+|++++|++++.|   |.|++||+.+++.+..+..          
T Consensus       219 -------~~~~~~~-----~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T 1sq9_A          219 -------PLYNFES-----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  286 (397)
T ss_dssp             -------EEEEEEC-----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             -------eeEEEec-----cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence                   1111110     0137   8899999999999999999999   9999999999999888874          


Q ss_pred             ----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee------cC---------------CCCeeEEEEcCCC
Q 004270          515 ----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------GH---------------TDRITDFCFSEDG  569 (764)
Q Consensus       515 ----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~------~h---------------~~~i~~l~~s~dg  569 (764)
                          ...|.+++|+|++++|++++.|+.|++||+.+++.+..+.      +|               ...|++++|+|+|
T Consensus       287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence                5889999999999999999999999999999999999999      88               9999999999998


Q ss_pred             ----------cEEEEEeCCCcEEEEEcCccc
Q 004270          570 ----------KWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       570 ----------~~l~s~s~dg~i~iwd~~~~~  590 (764)
                                ++|++++.||.|++||+.+|+
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                      799999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.7e-37  Score=324.40  Aligned_cols=300  Identities=14%  Similarity=0.167  Sum_probs=243.4

Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEee-CCCCEE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSS-DGQPLL  240 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~-d~~~~l  240 (764)
                      .+|++.+.+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+.. .|...|.+++|+| ++. +|
T Consensus        56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l  134 (383)
T 3ei3_B           56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN-QL  134 (383)
T ss_dssp             HHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE-EE
T ss_pred             ccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC-EE
Confidence            345556778888999999999999999999 9999999999999999999988877763 4689999999999 556 99


Q ss_pred             EEEeCCCcEEEEECCCceeeeeee--cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (764)
                      ++++.|+.|++||+.+. ....+.  ..|...|.+++|+|++++|++++.|+.|++||++.     ..+..+.+|...|.
T Consensus       135 ~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEE
T ss_pred             EEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEE
Confidence            99999999999999864 444443  13447899999999999999999999999999842     46677789999999


Q ss_pred             eEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          319 CIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       319 ~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      +++|+|+++ ++++++.|+.|++||+.+.......                                             
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------------------  243 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY---------------------------------------------  243 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE---------------------------------------------
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce---------------------------------------------
Confidence            999999998 9999999999999998653211000                                             


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                                                                   ...         .+|...|
T Consensus       244 -------------------------------------------------------------~~~---------~~~~~~v  253 (383)
T 3ei3_B          244 -------------------------------------------------------------IAE---------MPHEKPV  253 (383)
T ss_dssp             -------------------------------------------------------------EEE---------EECSSCE
T ss_pred             -------------------------------------------------------------EEE---------ecCCCce
Confidence                                                                         000         1466677


Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC------------------cceEEEEEeecCCEEEEEeCCCe
Q 004270          478 VGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------------------CSLVKIVYHRVNGLLATVADDLV  538 (764)
Q Consensus       478 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------------------~~i~~~~~s~~~~~la~~~~d~~  538 (764)
                      .+++|+| ++++|++++.|+.|++||+.+++....+..+                  ..+..++++|++++  +++.|+.
T Consensus       254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~  331 (383)
T 3ei3_B          254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT  331 (383)
T ss_dssp             EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC
T ss_pred             EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe
Confidence            7777877 7777777777788888887776665554421                  34455667777766  7778999


Q ss_pred             EEEEEccCCeEEEEeec--CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          539 IRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~~--h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      |++||+.+++.+..+.+  |...+..++|+|+|++|++++ |+.|++||+.+
T Consensus       332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            99999999999999987  457788889999999999997 99999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-36  Score=311.95  Aligned_cols=301  Identities=18%  Similarity=0.286  Sum_probs=253.1

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-----KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      ..+++.|.+.+..++|+|+.. ++|++|+.||+|++||+.+.     .+...+.+|...|.+++|+|++++|++|+.|+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~-~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCT-TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEECCccCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence            567888999999999999842 68999999999999998764     367788999999999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC--CE
Q 004270          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PV  282 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~  282 (764)
                      |++|+............. ...+..+.+++++. +|++|+.|+.+++||+...........+|...+..++|++++  .+
T Consensus       110 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEETTTTEEEEEEECC-SSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ceEEeecccceeeeecCC-CCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            999999988887777665 77899999999998 899999999999999987766555555899999999998865  47


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      +++++.|+.|++|++...    .....+.+|..+|++++|+|++++|++++.|+.|++||+.+......+.         
T Consensus       188 ~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------  254 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---------  254 (340)
T ss_dssp             EEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------
T ss_pred             EEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------
Confidence            889999999999998765    6777888999999999999999999999999999999987654332221         


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                                  +...+.+++++|++.++ ++
T Consensus       255 ------------------------------------------------------------~~~~v~~~~~~~~~~~~-~~  273 (340)
T 4aow_A          255 ------------------------------------------------------------GGDIINALCFSPNRYWL-CA  273 (340)
T ss_dssp             ------------------------------------------------------------CSSCEEEEEECSSSSEE-EE
T ss_pred             ------------------------------------------------------------CCceEEeeecCCCCcee-ec
Confidence                                                                        12678999999987655 55


Q ss_pred             ecCCcEEEEECcCCcccceecCcc-ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      +.|+.|++||++++.....+.... .....+|...|++++|+|++++|++|+.||.|++||+.+|+
T Consensus       274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            679999999999887766554221 11234789999999999999999999999999999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.6e-35  Score=350.30  Aligned_cols=499  Identities=13%  Similarity=0.074  Sum_probs=369.7

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC-------C--eEEEEec-CceEEEecccccc
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG-------N--HIAVVKR-AHQVATWSRHSAK   95 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g-------~--~i~vw~~-~~~~~~~~~h~~~   95 (764)
                      ++.++.++. +.+.+||+.+++..... .|...+.+++||||+.++|+.       +  .|++|+. +.+...+.+|...
T Consensus        24 ~~~iaf~~~-~~l~~~~~~gg~~~~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~  101 (1045)
T 1k32_A           24 GDRIIFVCC-DDLWEHDLKSGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK  101 (1045)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             CCEEEEEEC-CcEEEEECCCCcEEEee-eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCc
Confidence            356666654 79999999988765554 688999999999999887753       2  3999996 4456678999988


Q ss_pred             e-------EEEEE--eCCEEEEEecC------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC-
Q 004270           96 V-------NLLLL--FGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ-  159 (764)
Q Consensus        96 v-------~~l~~--~g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~-  159 (764)
                      +       ..++|  ||+.+++++.+      ..|.+|++.+++..     .+..+  ......|+| +   .+++++. 
T Consensus       102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~--~~~~~~~sp-G---~l~~~~~~  170 (1045)
T 1k32_A          102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-----PLNLG--PATHILFAD-G---RRVIGRNT  170 (1045)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-----ECCSC--SCSEEEEET-T---EEEEEESC
T ss_pred             ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-----EecCC--CcceeeeCC-C---EEEEeccC
Confidence            8       77776  78877777654      34777888776541     12112  223566888 5   6777653 


Q ss_pred             -----------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCE
Q 004270          160 -----------EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAV  227 (764)
Q Consensus       160 -----------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v  227 (764)
                                 +....+|....+.....+.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..+ . .+
T Consensus       171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~-~-~~  247 (1045)
T 1k32_A          171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF-T-DY  247 (1045)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC-C-SS
T ss_pred             CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC-C-Cc
Confidence                       234566654333455666899999999999998 6777778889999998764 4445555443 2 46


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec----------ccccCeeEEEEe-cCCCEEEEEcCCCcEEEEE
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----------AHDNAIISLHFF-ANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~  296 (764)
                      ...+|+|||+ .|+.+. ++.|.+||+...+.. .+..          .|...+.+++|+ |+|+.|++++ ++.+.+|+
T Consensus       248 ~~~~~SpDG~-~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~  323 (1045)
T 1k32_A          248 YPRHLNTDGR-RILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD  323 (1045)
T ss_dssp             CEEEEEESSS-CEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred             ceeeEcCCCC-EEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence            6779999999 666664 899999999554433 4431          144579999999 9999998887 78899997


Q ss_pred             ecCCCCCceeeEeccCCCC-CCeeEEEecCCCEEEEEeCCCcEE-EEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          297 FDTTDGDPRLLRFRSGHSA-PPLCIRFYANGRHILSAGQDRAFR-LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~l~s~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      ....    . ...+..|.. .+..++|+ ||+.+++++.++.+. +|++..+...                         
T Consensus       324 ~~~~----~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-------------------------  372 (1045)
T 1k32_A          324 VSGT----Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-------------------------  372 (1045)
T ss_dssp             TTSS----B-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-------------------------
T ss_pred             CCCC----c-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-------------------------
Confidence            6543    2 233456777 88999999 999999998877777 7776433210                         


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~  454 (764)
                                                               .+   ..+...+..++|+|+|+++++++.++.|++||+.
T Consensus       373 -----------------------------------------~l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          373 -----------------------------------------KF---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             -----------------------------------------EC---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             -----------------------------------------Ee---cCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence                                                     00   0344778999999999999999999999999999


Q ss_pred             CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC----------eEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----------DIKVWDFKGRDLKSRWEVGCSLVKIVYH  524 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~i~~~~~s  524 (764)
                      ++.......        .|...+.+++|+|||++|++++.++          .|++||+.+++......+...+..++|+
T Consensus       409 tg~~~~~~~--------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~s  480 (1045)
T 1k32_A          409 TGKPTVIER--------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD  480 (1045)
T ss_dssp             TCCEEEEEE--------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEEC
T ss_pred             CCceEEecc--------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEc
Confidence            988766553        7888899999999999999887654          8999999988744444445778889999


Q ss_pred             ecCCEEEEEeCCCeEEEEEccCCe-------------------------------------------EEEEeecCCCCee
Q 004270          525 RVNGLLATVADDLVIRLFDVVALR-------------------------------------------MVRKFEGHTDRIT  561 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d~~~~~-------------------------------------------~~~~~~~h~~~i~  561 (764)
                      |||++|++++.++...+|+.....                                           .+..+..|.+.+.
T Consensus       481 pdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~  560 (1045)
T 1k32_A          481 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  560 (1045)
T ss_dssp             TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChh
Confidence            999999999987776666543221                                           1233445677889


Q ss_pred             EEEEcCCCcEEEE-------------EeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          562 DFCFSEDGKWLLS-------------SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       562 ~l~~s~dg~~l~s-------------~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      .++|+|||+++++             .+.+..|.+||+.+++.....   ..+.+++|||||++|++++.+  .|++|++
T Consensus       561 ~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~~~--~i~~~d~  635 (1045)
T 1k32_A          561 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDD--GKIYTFP  635 (1045)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETT--SCEEEEE
T ss_pred             heEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEcCC--cEEEEeC
Confidence            9999999997875             123457889999988754333   568899999999999999866  3999999


Q ss_pred             cccc
Q 004270          629 RCMF  632 (764)
Q Consensus       629 ~~~~  632 (764)
                      ...-
T Consensus       636 ~~~~  639 (1045)
T 1k32_A          636 LEKP  639 (1045)
T ss_dssp             SSCT
T ss_pred             ccCc
Confidence            6543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.9e-37  Score=319.70  Aligned_cols=312  Identities=14%  Similarity=0.183  Sum_probs=255.7

Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      +..|..+|.+++|+|++++|++|+.||.|++||+.+++  .+..+..+ ...|.+++|+|+++ +|++++.||.|++||+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSN-RIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTT-EEEEEETTSCEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCC-EEEEEcCCCeEEEEEC
Confidence            45689999999999999999999999999999999987  77777654 88999999999998 9999999999999999


Q ss_pred             CCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270          255 EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       255 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      ++++...... ..|...|.+++|+|++++|++++.|+.|++|+++.............+|...|.+++|+|++++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            8887554442 368999999999999999999999999999999876533233444578899999999999999999999


Q ss_pred             CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (764)
Q Consensus       334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (764)
                      .|+.+++||+............                                                          
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~----------------------------------------------------------  183 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPT----------------------------------------------------------  183 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCB----------------------------------------------------------
T ss_pred             CCCCEEEEEccccccccccccc----------------------------------------------------------
Confidence            9999999998643221110000                                                          


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (764)
                                          +-+              .....+.....+        ..|...|.+++|+|++++|++++
T Consensus       184 --------------------~~~--------------~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          184 --------------------PWG--------------SKMPFGELMFES--------SSSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             --------------------TTB--------------SCCCTTCEEEEC--------CCCSSCEEEEEECSSSSEEEEEE
T ss_pred             --------------------ccc--------------cccchhhheEec--------CCCCCeEEEEEECCCCCEEEEEe
Confidence                                000              001112222222        27889999999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC--CeE---------------------
Q 004270          494 YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA--LRM---------------------  549 (764)
Q Consensus       494 ~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~--~~~---------------------  549 (764)
                      .||.|++||+.+++.+..+..+ .++.+++|+|++.+++++ .|+.|++|++.+  ++.                     
T Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (372)
T 1k8k_C          222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  300 (372)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence            9999999999999999888876 689999999999998888 999999999988  421                     


Q ss_pred             -----------E------EEe-ecCCCCeeEEEEc-CCC---cEEEEEeCCCcEEEEEcCccce
Q 004270          550 -----------V------RKF-EGHTDRITDFCFS-EDG---KWLLSSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       550 -----------~------~~~-~~h~~~i~~l~~s-~dg---~~l~s~s~dg~i~iwd~~~~~~  591 (764)
                                 .      ..+ .+|...|++++|+ ++|   ++|+|++.||.|++||+.+++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             hhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                       0      223 4899999999966 677   9999999999999999987643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-37  Score=323.27  Aligned_cols=314  Identities=18%  Similarity=0.229  Sum_probs=248.4

Q ss_pred             EcCCCCCeEEEEEcCC----CCEEEEEEcCCeEEEEEccCCceEEEEecc----CCCCEEEEEEeeC----CCCEEEEEe
Q 004270          177 FKGWGSSISSCVSSPA----LDVVAVGCSDGKIHVHNVRYDEELVTFTHS----MRGAVTALAFSSD----GQPLLASGA  244 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~----~~~la~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~fs~d----~~~~l~sg~  244 (764)
                      ..+|..+|.+++|+|+    ...+++++.++.|++||+.+++.+..+..+    +...|++++|+|+    +. +|++|+
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~   92 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAG   92 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEec
Confidence            4589999999999984    456777777789999999988877766632    3578999999999    55 899999


Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEec---cCCCCCCeeE
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCI  320 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i  320 (764)
                      .||.|++||+.+++.+..+. +|...|.+++|+| ++.+|++++.|+.|++||++..    ..+..+   .+|...|.++
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----TLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----EEEEEECSTTSCSSCEEEE
T ss_pred             CCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----eEEEEecccccccCceeEE
Confidence            99999999999999999888 8999999999999 8999999999999999998765    455554   6899999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|+|++++|++++.||.|++||+.+......+....                                            
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------------------  203 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY--------------------------------------------  203 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH--------------------------------------------
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCccccccceeE--------------------------------------------
Confidence            999999999999999999999998765443322100                                            


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                                                    .++|++..+.........        .....        ...|...|.++
T Consensus       204 ------------------------------~~~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~v~~~  237 (366)
T 3k26_A          204 ------------------------------DYNPNKTNRPFISQKIHF--------PDFST--------RDIHRNYVDCV  237 (366)
T ss_dssp             ------------------------------TCCGGGCSSCCCCEEECC--------CSEEE--------CSSCSSCCCEE
T ss_pred             ------------------------------EecCCCCcccccceeecc--------Ccccc--------ccCCcceEEEE
Confidence                                          000111100000000000        00000        13688889999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCe--------------eeeEecC-cceEEEEEeec--CCEEEEEeCCCeEEEEE
Q 004270          481 ACDSTNTLMISAGYHGDIKVWDFKGRDL--------------KSRWEVG-CSLVKIVYHRV--NGLLATVADDLVIRLFD  543 (764)
Q Consensus       481 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------~~~~~~~-~~i~~~~~s~~--~~~la~~~~d~~i~v~d  543 (764)
                      +|+  ++++++++.||.|++||+.+++.              +..+..+ ..+.+++|+|+  +++|++++.||.|++||
T Consensus       238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            998  67899999999999999877643              4444444 78999999999  99999999999999999


Q ss_pred             ccCCe----EEEEeecC--CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          544 VVALR----MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       544 ~~~~~----~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +.+++    ....+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99875    45578887  79999999999999999999999999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=341.91  Aligned_cols=354  Identities=10%  Similarity=0.029  Sum_probs=250.1

Q ss_pred             CCcceEEEEEeCCe---------EEEEECCeEEEEecCceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcc
Q 004270           55 LPKKIRALASYRDY---------TFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEE  125 (764)
Q Consensus        55 ~~~~I~~~~~~~~~---------~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~  125 (764)
                      +.+.|.+|+|+|+.         .++|++..-.    +.            ..-.++++.+++++.|++|+|||+.+++.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~----~~------------~~~~~~~~~laS~s~D~tI~iWd~~~~~~  195 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY----MD------------EPLNEHLEMFDKEKHSSCIQIFKMNTSTL  195 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------CEEEEEEEEETTTC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecc----cC------------CccchhhhhhccCCCCceEEEEEccCCCC
Confidence            57899999999986         7777754211    00            01147888999999999999999988765


Q ss_pred             cccceeeEecCCccccEEEEeCCC----CCCEEEEEeCCCcEEEEeCCCCeE-----------EEEEcCCCCCeEEEEEc
Q 004270          126 NLAPVGHVKLDDKFTPTCIMHPDT----YLNKVIVGSQEGSLQLWNISTKKK-----------LYEFKGWGSSISSCVSS  190 (764)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~----~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~i~~~~~s  190 (764)
                      .......+..+...+..++|+|++    ..+.|++++.||+|++||+.+++.           ...+.+|...|++++|+
T Consensus       196 ~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          196 HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred             CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence            322223455566778889999972    126899999999999999987642           34788999999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCEEEE--EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 004270          191 PALDVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAVTAL--AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH  267 (764)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l--~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h  267 (764)
                      ++ ..|++|+.||+|++||++++.. ...+.. |...|.++  +|+|++..+|++|+.|++|+|||+++++....+. +|
T Consensus       276 ~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~  352 (524)
T 2j04_B          276 SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SR  352 (524)
T ss_dssp             SS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EE
T ss_pred             CC-CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cc
Confidence            86 4899999999999999998754 344554 48899999  5788873399999999999999999988877776 66


Q ss_pred             cc--CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          268 DN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       268 ~~--~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ..  .|.+++|+|+++.+++++.|++|++||+...    ..+..+.+|...|++++|+|+++.|++|+.|++|++|++..
T Consensus       353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            53  5889999999999999999999999998765    34455678999999999999999999999999999999753


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      . ........                                                          .     ......
T Consensus       429 ~-~~~~~~~~----------------------------------------------------------~-----~~~~~~  444 (524)
T 2j04_B          429 R-LLHGIKNS----------------------------------------------------------S-----ATQKSL  444 (524)
T ss_dssp             S-TTTCC---------------------------------------------------------------------CCCC
T ss_pred             h-hccccccC----------------------------------------------------------c-----cceeee
Confidence            2 11000000                                                          0     000112


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCC---CEEEEEeCCCeEEEE
Q 004270          426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAGYHGDIKVW  501 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iw  501 (764)
                      .+.+++++|+|+.+.. ..+  +.+|... ++.....+        .+|...|.+++|+|++   ..+++|+.||.|+||
T Consensus       445 ~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l--------~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          445 RLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKI--------DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             EEEECBCCSSSCEEEE-CCC--CCCCC---------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             EEEEeccCCCCCeEEc-cCC--ceecccccCCcceeee--------cCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence            4667889999885422 222  2233222 34444444        4899999999999996   499999999999999


Q ss_pred             ECCCC
Q 004270          502 DFKGR  506 (764)
Q Consensus       502 d~~~~  506 (764)
                      ++...
T Consensus       514 ~l~~~  518 (524)
T 2j04_B          514 YLSLE  518 (524)
T ss_dssp             ECSCC
T ss_pred             Ecccc
Confidence            98743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.3e-37  Score=321.64  Aligned_cols=297  Identities=14%  Similarity=0.176  Sum_probs=245.8

Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI  329 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l  329 (764)
                      |++...+....+. +|...|.+++|+|++ ++|++++.|+.|++|++.....  .......+|...|.+++|+| ++++|
T Consensus        58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--TSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             HHHTTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--EEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             ccccccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--ceeeecCCcCCceeEEEeCCCCCCEE
Confidence            3444556666676 899999999999999 8999999999999999876532  33333357999999999999 78999


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++++.|+.|++||+.... ..                                                           
T Consensus       135 ~s~~~d~~i~iwd~~~~~-~~-----------------------------------------------------------  154 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGSV-IQ-----------------------------------------------------------  154 (383)
T ss_dssp             EEEETTTEEEEEETTSCE-EE-----------------------------------------------------------
T ss_pred             EEEeCCCEEEEEECCCCc-eE-----------------------------------------------------------
Confidence            999999999999986321 11                                                           


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-E
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L  488 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~  488 (764)
                            .+.....+...+.+++|+|+++++++|+.||.|++||+ ++.....+.        +|...|.+++|+|+++ +
T Consensus       155 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~--------~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          155 ------VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK--------LHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             ------EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE--------CSSSCEEEEEECSSCTTE
T ss_pred             ------EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec--------cCCCcEEEEEECCCCCCE
Confidence                  11112234578999999999999999999999999999 455555554        8999999999999998 9


Q ss_pred             EEEEeCCCeEEEEECCC----CCeeeeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCC------
Q 004270          489 MISAGYHGDIKVWDFKG----RDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHT------  557 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~------  557 (764)
                      +++++.|+.|++||+.+    +..+..+.+...+.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|.      
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            99999999999999997    67777787789999999999 99999999999999999999988877776553      


Q ss_pred             -----------CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--C-ceEEEEEcCCCCeEEEEEeCCCeE
Q 004270          558 -----------DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGV  623 (764)
Q Consensus       558 -----------~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~-~v~~l~~sp~g~~lat~~~d~~~i  623 (764)
                                 +.+..++|+|||++  +++.|+.|++||+.+++++..+..+  . .+..++|+|+|++|++++ |+ .|
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~-~i  375 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF-NI  375 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT-EE
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC-cE
Confidence                       23344666777766  7779999999999999999999863  3 377779999999999996 77 69


Q ss_pred             EEEeccc
Q 004270          624 YLWVNRC  630 (764)
Q Consensus       624 ~lW~~~~  630 (764)
                      ++|+++.
T Consensus       376 ~iw~~~~  382 (383)
T 3ei3_B          376 LIWNRED  382 (383)
T ss_dssp             EEEECC-
T ss_pred             EEEecCC
Confidence            9999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-38  Score=336.55  Aligned_cols=350  Identities=12%  Similarity=0.153  Sum_probs=265.4

Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC---Cc---e
Q 004270          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY---DE---E  215 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~---~~---~  215 (764)
                      .|+|++  +.+++++      .|+ .+++++..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+   +.   .
T Consensus        34 ~f~~~~--~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  104 (437)
T 3gre_A           34 EFGPIQ--EIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS  104 (437)
T ss_dssp             GGCCCC--CCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred             hcCCcc--ccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence            456777  4555543      488 578899999 89999999999999 999999999999999999987   43   2


Q ss_pred             EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---Cceeeeeee--------c-c--cccCeeEEE--EecC
Q 004270          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIR--------E-A--HDNAIISLH--FFAN  279 (764)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~--------~-~--h~~~v~~l~--~~~~  279 (764)
                      ...+  .|.+.|.+++|+|++. +|++|+.||.|++||++   +++......        . .  +...+.++.  ++++
T Consensus       105 ~~~~--~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          105 SLTY--DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             SEEE--ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             eeec--cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence            3333  3588999999999998 99999999999999995   444433332        0 1  455666666  4578


Q ss_pred             CCEEEEEcCCCcEEEEEecCCCCCceeeEeccC--CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                      +.+|++++.|+.|++||+...    ..+..+.+  |...|++++|+|++++|++++.||.|++||++.+.....+..   
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---  254 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTL----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF---  254 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTC----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC---
T ss_pred             CCEEEEEeCCCeEEEEeCCCC----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec---
Confidence            999999999999999998765    45666666  899999999999999999999999999999876544332211   


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc----
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS----  433 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s----  433 (764)
                                                                                      .+...|.+++++    
T Consensus       255 ----------------------------------------------------------------~~~~~v~~~~~~~~~s  270 (437)
T 3gre_A          255 ----------------------------------------------------------------GDHAPITHVEVCQFYG  270 (437)
T ss_dssp             ----------------------------------------------------------------TTCEEEEEEEECTTTC
T ss_pred             ----------------------------------------------------------------CCCCceEEEEeccccC
Confidence                                                                            233578888555    


Q ss_pred             cCCCEEEEEecCCcEEEEECcCCcccceecCcccc----------------cccc--ccCcEEEEEECCCCCEEEEEeCC
Q 004270          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER----------------SNYA--HNGEVVGVACDSTNTLMISAGYH  495 (764)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~----------------~~~~--h~~~v~~l~~~~~~~~l~s~~~d  495 (764)
                      +++.++++|+.||.|++||+.++.....+......                ...+  |...|++++|+ ++++|++++.|
T Consensus       271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            56889999999999999999998876665422110                1122  88889999999 77899999999


Q ss_pred             CeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC--C
Q 004270          496 GDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED--G  569 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d--g  569 (764)
                      |.|++||+.+++....+..+    ..+....+++...+++..        ++.........+..|...|++++|+++  +
T Consensus       350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~  421 (437)
T 3gre_A          350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDET  421 (437)
T ss_dssp             TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSS
T ss_pred             CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCc
Confidence            99999999999988888754    345555566555544443        233334445666779999999999998  8


Q ss_pred             cEEEEEeCCCcEEEEE
Q 004270          570 KWLLSSGMDGSLRIWD  585 (764)
Q Consensus       570 ~~l~s~s~dg~i~iwd  585 (764)
                      .+|++|+.||.|+||+
T Consensus       422 ~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          422 PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTSCEEEEC
T ss_pred             eEEEEEcCCceEEEeC
Confidence            8999999999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.9e-36  Score=320.19  Aligned_cols=291  Identities=19%  Similarity=0.306  Sum_probs=248.8

Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS  261 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~  261 (764)
                      .++.++||++ ++||+|. |++|+|||+.+++....+.. .|...|++++|+|+|+ +|++|+.||.|++||+++++.+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEE
Confidence            4678999986 5888876 89999999999998887764 4467899999999999 99999999999999999999999


Q ss_pred             eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      .+. +|...+.++.+.  +..|++++.|+.+++|+.....   ..+..+.+|...+..+.++|+++++++++.|+.+++|
T Consensus       184 ~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          184 NMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             EEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---eeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence            988 899999988874  6799999999999999876653   4566778999999999999999999999999999999


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      +...+.....                                                                      
T Consensus       258 ~~~~~~~~~~----------------------------------------------------------------------  267 (420)
T 4gga_A          258 PSAPGEGGWV----------------------------------------------------------------------  267 (420)
T ss_dssp             ESSCCSSCSC----------------------------------------------------------------------
T ss_pred             eeccccccce----------------------------------------------------------------------
Confidence            9765422110                                                                      


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEE--eCCCeE
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA--GYHGDI  498 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~--~~dg~v  498 (764)
                                                          .....        ..|...|.+++|+|.+. .++++  +.|++|
T Consensus       268 ------------------------------------~~~~~--------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          268 ------------------------------------PLQTF--------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             ------------------------------------CSEEE--------CCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             ------------------------------------eeeee--------cccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence                                                00011        27888999999999664 45543  479999


Q ss_pred             EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      ++||+.++++...+..+..+.++.|+++++.+++++  .|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+
T Consensus       304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s  383 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA  383 (420)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            999999999999999999999999999999998876  789999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCccceEEEEe
Q 004270          577 MDGSLRIWDVILARQIDAIH  596 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~~  596 (764)
                      .|++|+|||+.+..+.....
T Consensus       384 ~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          384 ADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             TTTEEEEECCSCSSCC----
T ss_pred             cCCeEEEEECCCCCccchhh
Confidence            99999999998776655443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=318.29  Aligned_cols=303  Identities=14%  Similarity=0.189  Sum_probs=249.2

Q ss_pred             CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---CCcEEEEECCCceeeeeeecccccCeeEEEEecC---CCEEEEE
Q 004270          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSA  286 (764)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~  286 (764)
                      .+.+..+...|...|.+++|+|++..++++|+.   ||.|++||+.+++.......+|...|.+++|+|+   +.+|+++
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            344455555568999999999999757777776   9999999999988766655579999999999998   6999999


Q ss_pred             cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE------ecCCCEEEEEeCCCcEEEEEeeccc-ccccccchhhhH
Q 004270          287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF------YANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAK  359 (764)
Q Consensus       287 ~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~------~~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~  359 (764)
                      +.|+.|++|++....   ..+..+.+|...|.++.|      +|++++|++++.|+.|++||+.+.. ....+..     
T Consensus        87 ~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----  158 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-----  158 (357)
T ss_dssp             ETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-----
T ss_pred             cCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-----
Confidence            999999999887663   255667799999999965      6789999999999999999987654 2211110     


Q ss_pred             HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE----EccC
Q 004270          360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT----ISAC  435 (764)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~  435 (764)
                                                                                 ........+.+++    ++|+
T Consensus       159 -----------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          159 -----------------------------------------------------------VQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             -----------------------------------------------------------CTTSCCCCEEEEEEECCCC-C
T ss_pred             -----------------------------------------------------------cCCCCCCceEEEEEEeccCCC
Confidence                                                                       0001124777787    7899


Q ss_pred             CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                      ++++++|+.+|.|++||+.++......         .|...|.+++|+|   ++.++++++.||.|++||+.+++....+
T Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          180 ERVVCAGYDNGDIKLFDLRNMALRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             CCEEEEEccCCeEEEEECccCceeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            999999999999999999998875442         7889999999999   9999999999999999999887766555


Q ss_pred             e------cCcceEEEEEeecCC-EEEEEeCCCeEEEEEccCC-------------------eEEEEeecCCCCeeEEEEc
Q 004270          513 E------VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-------------------RMVRKFEGHTDRITDFCFS  566 (764)
Q Consensus       513 ~------~~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~-------------------~~~~~~~~h~~~i~~l~~s  566 (764)
                      .      +...|.+++|+|+++ ++++++.||.|++||+.++                   +.+..+.+|...|++++|+
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s  330 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS  330 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred             eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence            3      458999999999998 8999999999999999854                   5678899999999999999


Q ss_pred             CCCcEEE-EEeCCCcEEEEEcCccce
Q 004270          567 EDGKWLL-SSGMDGSLRIWDVILARQ  591 (764)
Q Consensus       567 ~dg~~l~-s~s~dg~i~iwd~~~~~~  591 (764)
                      |+|++|+ +++.|+.|++||+.+.+.
T Consensus       331 ~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          331 PDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             SSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CCCCeEEEEecCCCcEEEEECCCccc
Confidence            9999998 899999999999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-36  Score=319.03  Aligned_cols=297  Identities=17%  Similarity=0.270  Sum_probs=247.6

Q ss_pred             eEEEEEcCCCCC--eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          172 KKLYEFKGWGSS--ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       172 ~~~~~~~~h~~~--i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      ..+....+|...  +.++.|++  ..+++++.||.|++||+.+++....+...|...|.+++|+|+++ +|++|+.||.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i  158 (401)
T 4aez_A           82 ERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLV  158 (401)
T ss_dssp             SEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             ceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeE
Confidence            344445566555  44566665  45788889999999999999998888877789999999999998 99999999999


Q ss_pred             EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                      ++||+.+++.+..+. +|...|.+++|  ++..+++++.|+.|++||++...   .....+.+|...|.+++|+|++++|
T Consensus       159 ~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l  232 (401)
T 4aez_A          159 DIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDGLQL  232 (401)
T ss_dssp             EEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCCCEE
Confidence            999999999999988 89999999999  45699999999999999987543   4566677899999999999999999


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++++.|+.|++||+.+...                                                             
T Consensus       233 ~s~~~d~~v~iwd~~~~~~-------------------------------------------------------------  251 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSIP-------------------------------------------------------------  251 (401)
T ss_dssp             EEEETTSCEEEEETTCSSE-------------------------------------------------------------
T ss_pred             EEEeCCCeEEEccCCCCCc-------------------------------------------------------------
Confidence            9999999999998753211                                                             


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-E
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L  488 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~  488 (764)
                                                                       ...+        ..|...|.+++|+|++. +
T Consensus       252 -------------------------------------------------~~~~--------~~~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          252 -------------------------------------------------KFTK--------TNHNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             -------------------------------------------------EEEE--------CCCSSCCCEEEECTTSTTE
T ss_pred             -------------------------------------------------cEEe--------cCCcceEEEEEECCCCCCE
Confidence                                                             1111        26888999999999764 5


Q ss_pred             EEEEe--CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEE--EeecCCCCeeE
Q 004270          489 MISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVR--KFEGHTDRITD  562 (764)
Q Consensus       489 l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~--~~~~h~~~i~~  562 (764)
                      +++++  .|+.|++||+.+++.+..+.++..+.+++|+|+++++++++  .||.|++||+.+++...  .+.+|...|.+
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~  354 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY  354 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence            55554  69999999999999999999999999999999999999954  89999999999976544  47799999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  595 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~  595 (764)
                      ++|+|+|++|++++.||.|++||+.+++.+...
T Consensus       355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            999999999999999999999999999877654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.8e-36  Score=317.51  Aligned_cols=298  Identities=12%  Similarity=0.195  Sum_probs=253.2

Q ss_pred             ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce------eeeeeecccccCeeEEEEecC----C---CEEEEEc
Q 004270          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFAN----E---PVLMSAS  287 (764)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~------~~~~~~~~h~~~v~~l~~~~~----~---~~l~s~~  287 (764)
                      ..|.+.|++++|+|  + +|++|+.||.|++||+.+++      ....+. +|...|.+++|+|+    +   .+|++++
T Consensus        13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence            45689999999998  4 89999999999999999887      677777 89999999999999    9   9999999


Q ss_pred             CCCcEEEEEecCCCCCce-eeEeccCC-----CCCCeeEEEe----cCCCE-EEEEeCCCcEEEEEeec------ccccc
Q 004270          288 ADNSIKMWIFDTTDGDPR-LLRFRSGH-----SAPPLCIRFY----ANGRH-ILSAGQDRAFRLFSVIQ------DQQSR  350 (764)
Q Consensus       288 ~d~~i~vw~~~~~~~~~~-~~~~~~~h-----~~~v~~i~~~----~~~~~-l~s~~~dg~i~i~d~~~------~~~~~  350 (764)
                      .|+.|++|++........ ....+..|     ...|.+++|+    |++++ |++++.||.|++||+..      .....
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  168 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  168 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence            999999999987643211 15666778     5999999999    99999 99999999999999876      21110


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (397)
T 1sq9_A          169 --------------------------------------------------------------------------------  168 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                       +.+.+.+.  +.               . ..       ...|...|.+++|+|++ ++++++.||.|++||+.+++.+.
T Consensus       169 -~~~~~~~~--~~---------------~-~~-------~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  221 (397)
T 1sq9_A          169 -WSPTLELQ--GT---------------V-ES-------PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY  221 (397)
T ss_dssp             -CCCEEEEE--EE---------------E-CC-------SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred             -ccCcceee--ee---------------e-cc-------ccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE
Confidence             00000000  00               0 00       02688899999999999 99999999999999999999999


Q ss_pred             eEec-------CcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeec-------------CCCCeeEEEEcC
Q 004270          511 RWEV-------GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEG-------------HTDRITDFCFSE  567 (764)
Q Consensus       511 ~~~~-------~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~-------------h~~~i~~l~~s~  567 (764)
                      .+..       ...+.+++|+|++++|++++.|   +.|++||+.+++.+..+.+             |...|.+++|+|
T Consensus       222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  301 (397)
T 1sq9_A          222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND  301 (397)
T ss_dssp             EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred             EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC
Confidence            8886       7899999999999999999999   9999999999999999999             999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCccceEEEEe------eC----------------CceEEEEEcCCC----------CeEEE
Q 004270          568 DGKWLLSSGMDGSLRIWDVILARQIDAIH------VD----------------VSITALSLSPNM----------DVLAT  615 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~----------------~~v~~l~~sp~g----------~~lat  615 (764)
                      ++++|++++.||.|++||+.+++.+..+.      .+                .+|++++|+|+|          ++|++
T Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s  381 (397)
T 1sq9_A          302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC  381 (397)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence            99999999999999999999999999998      54                569999999999          79999


Q ss_pred             EEeCCCeEEEEeccc
Q 004270          616 AHVDQNGVYLWVNRC  630 (764)
Q Consensus       616 ~~~d~~~i~lW~~~~  630 (764)
                      ++.|+ .|++|+++.
T Consensus       382 ~~~dg-~i~iw~~~~  395 (397)
T 1sq9_A          382 VCLDR-SIRWFREAG  395 (397)
T ss_dssp             EETTT-EEEEEEEEC
T ss_pred             ecCCC-cEEEEEcCC
Confidence            99999 699999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=332.55  Aligned_cols=325  Identities=15%  Similarity=0.192  Sum_probs=260.0

Q ss_pred             EEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCC---ceeee-e
Q 004270          188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK---RRLQS-V  262 (764)
Q Consensus       188 ~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~---~~~~~-~  262 (764)
                      .|+|++..+++++      .|+ .+++.+..+..+|.+.|++++|+| +++ +|++|+.||.|++||+.+   +.... .
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~  105 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSS  105 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCccccee
Confidence            4677787777654      387 558888888666789999999999 888 999999999999999877   43221 2


Q ss_pred             eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      ....|...|.+++|+|++.+|++++.|+.|++|+++.... ........+|  .+..+.++|++                
T Consensus       106 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~--~i~~~~~~~~~----------------  166 (437)
T 3gre_A          106 LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ESEVKFLNCE--CIRKINLKNFG----------------  166 (437)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TTEEEEEEEE--EEEEEEGGGGS----------------
T ss_pred             eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-Cceeeccccc--eeEEEEccCcc----------------
Confidence            2225999999999999999999999999999999852200 0222222222  33333333321                


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (437)
T 3gre_A          167 --------------------------------------------------------------------------------  166 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeEEEE--EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          423 NPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       423 ~~~~v~~~~--~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      +...+.++.  ++++++++++|+.||.|++||+.++.....+..      ..|...|++++|+|++++|++++.||.|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------SPRHGAVSSICIDEECCVLILGTTRGIIDI  240 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC------CGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc------CCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence            113445555  668899999999999999999999988887751      128999999999999999999999999999


Q ss_pred             EECCCCCeeeeEe--cCcceEEEEEee----cCCEEEEEeCCCeEEEEEccCCeEEEEeecC------------------
Q 004270          501 WDFKGRDLKSRWE--VGCSLVKIVYHR----VNGLLATVADDLVIRLFDVVALRMVRKFEGH------------------  556 (764)
Q Consensus       501 wd~~~~~~~~~~~--~~~~i~~~~~s~----~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h------------------  556 (764)
                      ||+++++++..+.  +..+|.+++++|    ++.+|++++.|+.|++||+.+++.+..+.+|                  
T Consensus       241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (437)
T 3gre_A          241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE  320 (437)
T ss_dssp             EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred             EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence            9999999988874  457899996654    6779999999999999999999998888754                  


Q ss_pred             --------CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-------------------------------
Q 004270          557 --------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------------------------------  597 (764)
Q Consensus       557 --------~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------------------  597 (764)
                              ...|++++|+ ++++|++++.|+.|++||+.+++.+..+..                               
T Consensus       321 ~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (437)
T 3gre_A          321 LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS  399 (437)
T ss_dssp             CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------
T ss_pred             ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccc
Confidence                    4457888888 779999999999999999999988777663                               


Q ss_pred             -------CCceEEEEEcCC--CCeEEEEEeCCCeEEEEe
Q 004270          598 -------DVSITALSLSPN--MDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       598 -------~~~v~~l~~sp~--g~~lat~~~d~~~i~lW~  627 (764)
                             ...|++++|+++  +.+|++++.|+ .|++|+
T Consensus       400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG-~I~iw~  437 (437)
T 3gre_A          400 VDDSLYHHDIINSISTCEVDETPLLVACDNSG-LIGIFQ  437 (437)
T ss_dssp             -------CCCEEEEEEEESSSSEEEEEEETTS-CEEEEC
T ss_pred             cCcccccccceeeEeeeccCCceEEEEEcCCc-eEEEeC
Confidence                   445999999998  88999999999 599995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.7e-37  Score=327.72  Aligned_cols=300  Identities=15%  Similarity=0.179  Sum_probs=234.6

Q ss_pred             CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeC-CCCEEEEEeCCC
Q 004270          171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSD-GQPLLASGASSG  247 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d-~~~~l~sg~~dg  247 (764)
                      .+......+|...|+|++|+| ++++||+|+.||.|+|||+.+++....+. .+|.+.|++++|+|. +. +|++|+.||
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s~s~D~  187 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYASSMEG  187 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEEECSSS
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEEEeCCC
Confidence            344556678899999999999 56799999999999999998877555443 345889999999984 55 999999999


Q ss_pred             cEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          248 VISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                      +|++||++++....... ..+...+.+++|+|++.+|++|+.||.|++||++..     .+..+.+|...|.+++|+|++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCSBCCSSCEEEEEECTTC
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEEecccceEEeeeecCCC
Confidence            99999998765443332 123446789999999999999999999999998643     455678999999999999977


Q ss_pred             C-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          327 R-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       327 ~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      . ++++++.|+.|++||+++......+.                                                    
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~----------------------------------------------------  290 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFL----------------------------------------------------  290 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCS----------------------------------------------------
T ss_pred             ceEEEEecCcceeeEEecccccccceEE----------------------------------------------------
Confidence            5 78899999999999986543211110                                                    


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                                                             .        ..+|...|++++|+|+
T Consensus       291 -------------------------------------------------------~--------~~~h~~~v~~~~~spd  307 (435)
T 4e54_B          291 -------------------------------------------------------Y--------SLPHRHPVNAACFSPD  307 (435)
T ss_dssp             -------------------------------------------------------B--------CCBCSSCEEECCBCTT
T ss_pred             -------------------------------------------------------E--------eeeccccccceeECCC
Confidence                                                                   0        0278888999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecC-------cceEEEEEeecCCEEEEEe------------CCCeEEEEEccC
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVA------------DDLVIRLFDVVA  546 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~------------~d~~i~v~d~~~  546 (764)
                      +++|++++.||.|++||+.+++....+..+       ..+....|+|++.+++++.            .++.|++||..+
T Consensus       308 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          308 GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            999999999999999999888766655432       1234556777777777664            345799999999


Q ss_pred             CeEEEEee-cCCCCeeEE-EEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270          547 LRMVRKFE-GHTDRITDF-CFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (764)
Q Consensus       547 ~~~~~~~~-~h~~~i~~l-~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  592 (764)
                      ++.+..+. +|...|.++ +|+|+|++|++|+ |++|+|||+++|+..
T Consensus       388 g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          388 GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            99988865 688889987 6999999999876 889999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=308.66  Aligned_cols=295  Identities=16%  Similarity=0.255  Sum_probs=256.3

Q ss_pred             eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                      ..+. +|.+.|++++|+|++++|++++.|+.|++|++...    ..+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus        26 ~~l~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           26 IKLT-GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEE-CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             EEEE-EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3455 89999999999999999999999999999998765    567778899999999999999999999999999999


Q ss_pred             EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (764)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (764)
                      ||+.+++....+.                                                                   
T Consensus       101 wd~~~~~~~~~~~-------------------------------------------------------------------  113 (369)
T 3zwl_B          101 WDVSNGQCVATWK-------------------------------------------------------------------  113 (369)
T ss_dssp             EETTTCCEEEEEE-------------------------------------------------------------------
T ss_pred             EECCCCcEEEEee-------------------------------------------------------------------
Confidence            9987654332221                                                                   


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCc---cccccccccC--cEEEEEECCCCCEEE
Q 004270          421 PENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDM---SERSNYAHNG--EVVGVACDSTNTLMI  490 (764)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~--~v~~l~~~~~~~~l~  490 (764)
                        +...+.+++|+|+++++++++.+     |.|.+|++..+.....+...   .......|..  .+.+++|+|++++++
T Consensus       114 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (369)
T 3zwl_B          114 --SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII  191 (369)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred             --cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence              23789999999999999999999     99999999887654333211   1111234555  899999999999999


Q ss_pred             EEeCCCeEEEEECCC-CCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270          491 SAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       491 s~~~dg~v~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      +++.||.|++||+.+ .+.+..+..+ ..+.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+..++|+|+
T Consensus       192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  270 (369)
T 3zwl_B          192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPL  270 (369)
T ss_dssp             EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred             EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCC
Confidence            999999999999998 6777777754 889999999999999999999999999999999999888 7788999999999


Q ss_pred             CcEEEEEeCCC--------------cEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270          569 GKWLLSSGMDG--------------SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       569 g~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~  631 (764)
                      ++++++++.++              .+++||+.+++.+..+..|. .|++++|+|+|++|++++.|+ .|++|+++..
T Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~~~  347 (369)
T 3zwl_B          271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG-FIRLHHFEKS  347 (369)
T ss_dssp             SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEEECHH
T ss_pred             CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC-eEEEEECccc
Confidence            99999999888              89999999999999998665 599999999999999999999 6999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.9e-36  Score=312.59  Aligned_cols=296  Identities=13%  Similarity=0.129  Sum_probs=228.2

Q ss_pred             ccCeeEEEEecCCCEEEEEcCC-------CcEEEEEecCCCCCce------eeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270          268 DNAIISLHFFANEPVLMSASAD-------NSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~~d-------~~i~vw~~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~  334 (764)
                      ..+|++++|+||+++|++||.|       +.|++|+++.......      ....+.+|...|.++++.  +..++++..
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            4589999999999999999754       3599999976643211      112456888889888764  557777654


Q ss_pred             -----------CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          335 -----------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       335 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                                 |+.+|+|++.........                                                   
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~---------------------------------------------------  120 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEF---------------------------------------------------  120 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEE---------------------------------------------------
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEE---------------------------------------------------
Confidence                       556666665443211110                                                   


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                       +.       .........+...+.+++|||||+++++++  .|+.|++||+.++.....+         .|.+.|.+++
T Consensus       121 -~~-------~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~---------~~~~~V~~v~  183 (365)
T 4h5i_A          121 -LT-------SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI---------ETRGEVKDLH  183 (365)
T ss_dssp             -EE-------EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE---------ECSSCCCEEE
T ss_pred             -ee-------eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe---------CCCCceEEEE
Confidence             00       011111223346789999999999987665  6899999999999887765         5778899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCC----eEEEEEccCCeE----E
Q 004270          482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALRM----V  550 (764)
Q Consensus       482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~----~i~v~d~~~~~~----~  550 (764)
                      |+|+|+++++++.+ .+++|+..+++.+....   +...+.+++|+|+++++++++.|+    .+++|++.....    .
T Consensus       184 fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~  262 (365)
T 4h5i_A          184 FSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS  262 (365)
T ss_dssp             ECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence            99999999998854 56677777666554332   347899999999999999999887    688999877653    4


Q ss_pred             EEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE-eeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      ..+.+|...|++++|||||++||+|+.|++|+|||+.+++++..+ ..|. +|++++|||||++||+++.|+ +|+||++
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~i  341 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKL  341 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEEC
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence            567889999999999999999999999999999999999999886 5554 599999999999999999999 7999999


Q ss_pred             ccccCCC
Q 004270          629 RCMFSGD  635 (764)
Q Consensus       629 ~~~~~~~  635 (764)
                      ...|...
T Consensus       342 p~~~~~~  348 (365)
T 4h5i_A          342 PLNYANY  348 (365)
T ss_dssp             CTTTTC-
T ss_pred             CCCCcCc
Confidence            8766643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-36  Score=315.78  Aligned_cols=322  Identities=15%  Similarity=0.189  Sum_probs=230.9

Q ss_pred             eEEEEeccCCCCEEEEEEeeC---CCCEEEEEeCCCcEEEEECCCceeeeeeec----ccccCeeEEEEecC----CCEE
Q 004270          215 ELVTFTHSMRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN----EPVL  283 (764)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~----~~~l  283 (764)
                      ....+..+|.++|++++|+|+   +...+++++.++.|++||+.+++.+..+..    .|...|.+++|+|+    +++|
T Consensus         9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A            9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            344566677999999999984   444677777788999999998877666651    25578999999999    6699


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      ++++.|+.|++|++...    +.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+++....+.         
T Consensus        89 ~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------  155 (366)
T 3k26_A           89 AVAGSRGIIRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---------  155 (366)
T ss_dssp             EEEETTCEEEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---------
T ss_pred             EEecCCCEEEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---------
Confidence            99999999999988765    56777789999999999999 99999999999999999986543222110         


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                              ....+...+.+++|+|++++++++
T Consensus       156 --------------------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~  179 (366)
T 3k26_A          156 --------------------------------------------------------GVEGHRDEVLSADYDLLGEKIMSC  179 (366)
T ss_dssp             --------------------------------------------------------STTSCSSCEEEEEECTTSSEEEEE
T ss_pred             --------------------------------------------------------ccccccCceeEEEECCCCCEEEEe
Confidence                                                                    001223444444444444444444


Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEE
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~  522 (764)
                      +.||.|++||+.++....           ....   .+.++|++..+..........       .......+...|.+++
T Consensus       180 ~~dg~i~i~d~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          180 GMDHSLKLWRINSKRMMN-----------AIKE---SYDYNPNKTNRPFISQKIHFP-------DFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             ETTSCEEEEESCSHHHHH-----------HHHH---HHTCCGGGCSSCCCCEEECCC-------SEEECSSCSSCCCEEE
T ss_pred             cCCCCEEEEECCCCcccc-----------ccce---eEEecCCCCcccccceeeccC-------ccccccCCcceEEEEE
Confidence            444444444444322110           0000   122223222221111100000       0000011458899999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCe--------------EEEEeecCCCCeeEEEEcCC--CcEEEEEeCCCcEEEEEc
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALR--------------MVRKFEGHTDRITDFCFSED--GKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~--------------~~~~~~~h~~~i~~l~~s~d--g~~l~s~s~dg~i~iwd~  586 (764)
                      |+  ++++++++.|+.|++||+.+++              .+..+.+|...|++++|+|+  +++|++++.||.|++||+
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            98  8899999999999999998774              48889999999999999999  999999999999999999


Q ss_pred             Cccce----EEEEeeC---CceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          587 ILARQ----IDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       587 ~~~~~----~~~~~~~---~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .+++.    ...+..+   ..|++++|+|++++|++++.|+ .|++|++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~  365 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-SIWRWDRL  365 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-EEEEEEec
Confidence            98864    3466665   5699999999999999999999 69999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-35  Score=336.74  Aligned_cols=293  Identities=21%  Similarity=0.308  Sum_probs=247.6

Q ss_pred             eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      ...+. +|.+.|++++|+|++ .+|++|+.|++|++|++...... ......+.+|...|.+++|+|++++|++++.|++
T Consensus       375 ~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          375 KGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            34455 899999999999875 69999999999999998765332 2445677899999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |++||+.++.....+                                                                 
T Consensus       454 v~vwd~~~~~~~~~~-----------------------------------------------------------------  468 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRF-----------------------------------------------------------------  468 (694)
T ss_dssp             EEEEETTTTEEEEEE-----------------------------------------------------------------
T ss_pred             EEEEECCCCcceeEE-----------------------------------------------------------------
Confidence            999998765432221                                                                 


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--CEEEEEeCC
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGYH  495 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~d  495 (764)
                         .+|...|.+++|+|+++++++|+.|+.|++||...........     ...+|...|.+++|+|++  ..+++++.|
T Consensus       469 ---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  540 (694)
T 3dm0_A          469 ---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASWD  540 (694)
T ss_dssp             ---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----STTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence               1466889999999999999999999999999986543322211     113789999999999987  689999999


Q ss_pred             CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      ++|++||+.++++...+..+ ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++
T Consensus       541 ~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~  619 (694)
T 3dm0_A          541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCA  619 (694)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEE
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEE
Confidence            99999999999998888765 8899999999999999999999999999999999888875 467999999999998887


Q ss_pred             EeCCCcEEEEEcCccceEEEEeeCC--------------------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          575 SGMDGSLRIWDVILARQIDAIHVDV--------------------SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~~~~--------------------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ++ |+.|++||+.+++.+..+..+.                    .+++++|||+|++|++++.|+ .|++|++.
T Consensus       620 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-~i~iW~i~  692 (694)
T 3dm0_A          620 AT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG-VIRVWGIG  692 (694)
T ss_dssp             EE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred             Ec-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC-eEEEEecc
Confidence            65 5669999999999887775321                    278999999999999999999 69999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-35  Score=297.99  Aligned_cols=284  Identities=18%  Similarity=0.256  Sum_probs=242.0

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      +....+.. |.+.|++++| ++++ +|++|+.||.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.++
T Consensus         9 ~~~~~l~~-h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKG-HDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECC-CSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHhhC-CCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            44455544 5899999999 8888 89999999999999999998888887 8999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|++..... ......+.+|...|.+++|  +++++++++.|+.+++||.  ..                          
T Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~--------------------------  133 (313)
T 3odt_A           85 GVPLFATSG-EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GS--------------------------  133 (313)
T ss_dssp             EEETTCCTT-SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TE--------------------------
T ss_pred             EEEeeecCC-CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--Cc--------------------------
Confidence            999876532 2345556789999999988  5678999999999999981  10                          


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (313)
T 3odt_A          134 --------------------------------------------------------------------------------  133 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEEEEeecCCEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLL  530 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~~~s~~~~~l  530 (764)
                          ....+        ..|...+.++++.| +++++++++.||.|++||  ..+....+.  +...+.+++|+|++. +
T Consensus       134 ----~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~  198 (313)
T 3odt_A          134 ----LVYNL--------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-F  198 (313)
T ss_dssp             ----EEEEE--------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred             ----EEEec--------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-E
Confidence                00011        26888899999988 889999999999999999  444555554  458999999999988 9


Q ss_pred             EEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCC
Q 004270          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPN  609 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~  609 (764)
                      ++++.|+.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..+. +|.+++|+|+
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence            999999999999999999999999999999999999999 58899999999999999999999998776 5999999999


Q ss_pred             CCeEEEEEeCCCeEEEEeccc
Q 004270          610 MDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       610 g~~lat~~~d~~~i~lW~~~~  630 (764)
                      ++ +++++.|+ .|++|+++.
T Consensus       278 ~~-~~~~~~dg-~i~iw~~~~  296 (313)
T 3odt_A          278 GD-IIVGSSDN-LVRIFSQEK  296 (313)
T ss_dssp             SC-EEEEETTS-CEEEEESCG
T ss_pred             CC-EEEEeCCC-cEEEEeCCC
Confidence            98 55688888 599999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=297.89  Aligned_cols=284  Identities=20%  Similarity=0.297  Sum_probs=242.8

Q ss_pred             eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (764)
Q Consensus       184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~  262 (764)
                      .++|+||+++ +||+|. |++|+|||+.+++.+..+.. .|...|++++|+|+++ +|++|+.||.|++||+++++.+..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEE
Confidence            5779999985 788765 89999999999999888763 4567899999999999 999999999999999999999999


Q ss_pred             eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +. +|...+.++.+  ++..+++++.++.+++|+.....   ..+..+.+|...+..+.+.++++++++++.|+.|++||
T Consensus       105 ~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          105 MT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  178 (318)
T ss_dssp             EE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCc---eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence            88 89888877655  56799999999999999876543   45666789999999999999999999999999999999


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      +.+++......                                                                     
T Consensus       179 ~~~~~~~~~~~---------------------------------------------------------------------  189 (318)
T 4ggc_A          179 SAPGEGGWVPL---------------------------------------------------------------------  189 (318)
T ss_dssp             SSCBTTBSCCS---------------------------------------------------------------------
T ss_pred             CCCCcccccce---------------------------------------------------------------------
Confidence            86543221100                                                                     


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE---EEEeCCCeEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM---ISAGYHGDIK  499 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l---~s~~~dg~v~  499 (764)
                                                           ..        ...|.+.|.+++++|++..+   ++++.++.|+
T Consensus       190 -------------------------------------~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          190 -------------------------------------QT--------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             -------------------------------------EE--------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             -------------------------------------ee--------ecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence                                                 00        02567788888888876533   3566889999


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +||...............+..+.++++++.+++++  .|+.|++||+.+++++.++.+|.+.|++++|+|||++|+||+.
T Consensus       225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            99999999998888889999999999999888765  7999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCccc
Q 004270          578 DGSLRIWDVILAR  590 (764)
Q Consensus       578 dg~i~iwd~~~~~  590 (764)
                      ||+|+|||+.+..
T Consensus       305 D~~v~iWd~~~~d  317 (318)
T 4ggc_A          305 DETLRLWRCFELD  317 (318)
T ss_dssp             TTEEEEECCSCCC
T ss_pred             CCeEEEEECCCCC
Confidence            9999999997653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-38  Score=326.03  Aligned_cols=327  Identities=9%  Similarity=0.051  Sum_probs=257.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      .....|.+++|||||+++|+++.|++|+  |...++.+   . +|...|.+++|+|+|        .++.+.+|+.+...
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-CNSKNLFHVKEFPLE--------FENKLDFELAQQNG   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-SBGGGTEEEEEECCC--------CCCTTTTSCCCSSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-CCCccEEEEEECCCC--------CcceEEEEeCCCce
Confidence            3467899999999999999999999999  77666655   3 458899999999998        45666666543222


Q ss_pred             eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-----CCeeEEEecCCCEEEEEe
Q 004270          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-----PPLCIRFYANGRHILSAG  333 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-----~v~~i~~~~~~~~l~s~~  333 (764)
                         .+...|...|.+++|+|+|.+|++++.||.|++|+.+      .++..+. |..     .+.+++|+|||++|++|+
T Consensus        79 ---~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           79 ---LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             ---SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             ---EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence               2222468899999999999999999999999999842      2555555 665     499999999999999999


Q ss_pred             CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (764)
Q Consensus       334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (764)
                      .||+|++||+..+..... .                                               .+.+         
T Consensus       149 ~DGtVkIWd~~~~~l~~~-~-----------------------------------------------~i~l---------  171 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTP-E-----------------------------------------------FYFE---------  171 (588)
T ss_dssp             TTSEEEEEECCCCTTTCC-C-----------------------------------------------CEEE---------
T ss_pred             CCCEEEEEECCCCccccc-c-----------------------------------------------ceee---------
Confidence            999999999876432000 0                                               0000         


Q ss_pred             ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc---ceecCccccccccccCcEEEEEECCCCCEEE
Q 004270          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                      ........+|...|.+++|+|+|  +++++.|+.|++|++.++...   ..+.       .+|...|.+++|+  ++.++
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-------~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-------NASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-------CCCSSCCCCEEEE--TTEEE
T ss_pred             eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-------ccccCcEEEEEEE--CCEEE
Confidence            00001112466899999999999  888999999999999887743   2332       2788999999999  68899


Q ss_pred             EEeCCCeEEEEECCCCCe-eeeEecCcceEEEEE--eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270          491 SAGYHGDIKVWDFKGRDL-KSRWEVGCSLVKIVY--HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~-~~~~~~~~~i~~~~~--s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~  567 (764)
                      +++ +++|++||+.+++. .....+...+..++|  +|++..+++++.||+ ++|..+                .++|+|
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~sp  302 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTA  302 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEEC
T ss_pred             EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECC
Confidence            887 69999999998887 444456689999999  999999999999999 999987                267999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEe
Q 004270          568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~  618 (764)
                      |+..+++.  |+++++|+...+. +..+.....|.+++|||||+.+|+++.
T Consensus       303 d~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          303 DNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence            99988774  9999999976444 444445445999999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=317.40  Aligned_cols=353  Identities=14%  Similarity=0.187  Sum_probs=257.4

Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEEEEeC-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc------------
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFK------------  178 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------  178 (764)
                      ++.+++|+++..+.    ...+..|...+..++|+| ++  ++|++|+.||.|++||+.+++....+.            
T Consensus        22 ~~~~~v~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           22 ESTRRVLGLELNKD----RDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHTEEECTT----EEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             cCcceeeccccCcc----eeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence            45677888877766    566667888999999999 88  899999999999999999876554443            


Q ss_pred             -CCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC--CEEEEEeCCCcEEEEEC
Q 004270          179 -GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ--PLLASGASSGVISIWNL  254 (764)
Q Consensus       179 -~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~--~~l~sg~~dg~i~iwd~  254 (764)
                       +|...|.+++|+| ++.+|++++.||.|++||+.+++....+..  ...+.++.|++.+.  .++++++.+|.|++||+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence             5999999999999 778999999999999999999998888874  57899999998543  28999999999999999


Q ss_pred             CCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCcee------------eEeccCCCCCCeeEE
Q 004270          255 EKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRL------------LRFRSGHSAPPLCIR  321 (764)
Q Consensus       255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~------------~~~~~~h~~~v~~i~  321 (764)
                      ++++.+..+. +|...|.+++|+|+++ ++++++.||.|++||+.........            .....+|...|.+++
T Consensus       174 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          174 KSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             SSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             CCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            9999988888 8999999999999998 5899999999999998765421111            112257899999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCce
Q 004270          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (764)
Q Consensus       322 ~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (764)
                      |+|++++|++++.|+.+++||+.++..........                                             
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------------------------  287 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV---------------------------------------------  287 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC---------------------------------------------
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCCccceeccccc---------------------------------------------
Confidence            99999999999999999999998765433221100                                             


Q ss_pred             EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                        ................+..+++++.++.|++||+.++.....+.        +|...|++++
T Consensus       288 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~  341 (408)
T 4a11_B          288 ------------------CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--------GHYKTVDCCV  341 (408)
T ss_dssp             ------------------CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--------CCSSCEEEEE
T ss_pred             ------------------cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--------cCCCeEEEEE
Confidence                              00001112222233445677778889999999999999888875        8999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccC
Q 004270          482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~  546 (764)
                      |+|++++|++++.||.|++||+.+++.+...........  +.+ ....+.....++.+++|+...
T Consensus       342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQ--LNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred             EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccc--cccccceeecccCccCceeecCCcc
Confidence            999999999999999999999999887766544432222  222 334555677889999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=307.17  Aligned_cols=299  Identities=14%  Similarity=0.232  Sum_probs=240.7

Q ss_pred             CceeeeeeecccccCeeEEEEecCCCEE-EEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCE
Q 004270          256 KRRLQSVIREAHDNAIISLHFFANEPVL-MSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRH  328 (764)
Q Consensus       256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~  328 (764)
                      ..+.+..+..+|...|.+++|+|+++.+ ++++.   |+.|++|++....   .......+|..+|.+++|+|+   +++
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~   82 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---LKLLREIEKAKPIKCGTFGATSLQQRY   82 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---EEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---ccceeeecccCcEEEEEEcCCCCCCce
Confidence            3344444444899999999999999655 55655   8999999998653   122223379999999999998   699


Q ss_pred             EEEEeCCCcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          329 ILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      |++++.||.|++||+.+.. ....+                                                       
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------------------------------------  107 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSV-------------------------------------------------------  107 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEE-------------------------------------------------------
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEE-------------------------------------------------------
Confidence            9999999999999987654 22111                                                       


Q ss_pred             cceeecceeecCCCCCCCCeEEEE------EccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccccCcEEEE
Q 004270          408 QNFVLGEHILRPCPENPTAVKACT------ISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~------~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                                   ..|...+.+++      ++|+++++++|+.||.|++||+.++. ....+....    ..+...+.++
T Consensus       108 -------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~v~~~  170 (357)
T 3i2n_A          108 -------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ----GENKRDCWTV  170 (357)
T ss_dssp             -------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT----TSCCCCEEEE
T ss_pred             -------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC----CCCCCceEEE
Confidence                         14557888884      57899999999999999999999887 454443100    1123488898


Q ss_pred             E----ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee---cCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270          481 A----CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATVADDLVIRLFDVVALRMVRKF  553 (764)
Q Consensus       481 ~----~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~---~~~~la~~~~d~~i~v~d~~~~~~~~~~  553 (764)
                      +    |+|+++++++++.||.|++||+.+++......+...+.+++|+|   ++.++++++.|+.|++||+.+++.+..+
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            8    78899999999999999999999999888888889999999999   9999999999999999999887665444


Q ss_pred             e-----cCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCcc-------------------ceEEEEeeCC-ceEEEEEc
Q 004270          554 E-----GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA-------------------RQIDAIHVDV-SITALSLS  607 (764)
Q Consensus       554 ~-----~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~~~-~v~~l~~s  607 (764)
                      .     +|...|++++|+|+++ +|++++.||.|++||+.++                   +++..+..|. +|++++|+
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s  330 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS  330 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred             eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence            4     8999999999999999 8999999999999999854                   3556666554 59999999


Q ss_pred             CCCCeEE-EEEeCCCeEEEEeccc
Q 004270          608 PNMDVLA-TAHVDQNGVYLWVNRC  630 (764)
Q Consensus       608 p~g~~la-t~~~d~~~i~lW~~~~  630 (764)
                      |+|++|+ +++.|+ .|++|++..
T Consensus       331 ~~~~~l~~s~~~d~-~i~iw~~~~  353 (357)
T 3i2n_A          331 PDKRGLCVCSSFDQ-TVRVLIVTK  353 (357)
T ss_dssp             SSSTTEEEEEETTS-EEEEEEECC
T ss_pred             CCCCeEEEEecCCC-cEEEEECCC
Confidence            9999999 788888 699999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=303.49  Aligned_cols=303  Identities=16%  Similarity=0.193  Sum_probs=250.7

Q ss_pred             EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV  210 (764)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~  210 (764)
                      +..+...+..++|+|++  +++++++.+|.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         4 ~~~~~~~i~~~~~s~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDR--TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EESCSSCCCEEEECTTS--SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ecccCCCeEEEEECCCC--CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            34577788899999999  899999999999999999988  89999999999999999999999999999999999999


Q ss_pred             cCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEE
Q 004270          211 RYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA  286 (764)
Q Consensus       211 ~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~  286 (764)
                      .+++....+. ..|...|.+++|+|+++ +|++++.||.|++||++.++.   ...+..+|...|.+++|+|++++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            9888665553 34578999999999998 999999999999999988763   444444789999999999999999999


Q ss_pred             cCCCcEEEEEecCC--------------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccc
Q 004270          287 SADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  352 (764)
Q Consensus       287 ~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  352 (764)
                      +.|+.|++||+...              ......+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            99999999997522              1123567777899999999999999999999999999999998765433322


Q ss_pred             cchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE
Q 004270          353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  432 (764)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  432 (764)
                      .                                                                    .+...+.+++|
T Consensus       241 ~--------------------------------------------------------------------~~~~~v~~~~~  252 (372)
T 1k8k_C          241 A--------------------------------------------------------------------SETLPLLAVTF  252 (372)
T ss_dssp             E--------------------------------------------------------------------CSSCCEEEEEE
T ss_pred             c--------------------------------------------------------------------cCCCCeEEEEE
Confidence            1                                                                    23478999999


Q ss_pred             ccCCCEEEEEecCCcEEEEECcC--Ccc--cceec----------------------Ccc-------ccccccccCcEEE
Q 004270          433 SACGNFAVLGTAGGWIERFNLQS--GIS--RGSYL----------------------DMS-------ERSNYAHNGEVVG  479 (764)
Q Consensus       433 s~~g~~l~~g~~~g~i~i~~~~~--~~~--~~~~~----------------------~~~-------~~~~~~h~~~v~~  479 (764)
                      +|+++++++| .+|.|++|++.+  +..  ...+.                      ...       .....+|...|++
T Consensus       253 ~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  331 (372)
T 1k8k_C          253 ITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ  331 (372)
T ss_dssp             EETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred             ecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcce
Confidence            9999999888 999999999988  421  00000                      000       1111489999999


Q ss_pred             EEEC-CCC---CEEEEEeCCCeEEEEECCCCC
Q 004270          480 VACD-STN---TLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       480 l~~~-~~~---~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      ++|. +++   ++|++++.||.|++|++.+++
T Consensus       332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9966 666   999999999999999987653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-35  Score=315.61  Aligned_cols=291  Identities=15%  Similarity=0.194  Sum_probs=233.0

Q ss_pred             eeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCc
Q 004270          260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA  337 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~  337 (764)
                      ..... +|...|++|+|+| ++.+|++|+.||.|++||++....  .......+|...|++++|+| ++++|++++.||+
T Consensus       112 ~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          112 LQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            33444 7889999999999 456999999999999998876543  34555679999999999998 7899999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |++||+.......                                                                  +
T Consensus       189 v~iwd~~~~~~~~------------------------------------------------------------------~  202 (435)
T 4e54_B          189 TRLQDFKGNILRV------------------------------------------------------------------F  202 (435)
T ss_dssp             EEEEETTSCEEEE------------------------------------------------------------------E
T ss_pred             EEEeeccCCceeE------------------------------------------------------------------E
Confidence            9999985432110                                                                  1


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeCCC
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHG  496 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg  496 (764)
                      .....+...+.+++++|+++++++|+.+|.|++||+... ....+        .+|...|.+++|+|++. ++++++.|+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~--------~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL--------RMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS--------BCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE--------ecccceEEeeeecCCCceEEEEecCcc
Confidence            111123356788999999999999999999999998643 33444        38999999999999876 788999999


Q ss_pred             eEEEEECCCCCeeeeE----ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC------eeEEEEc
Q 004270          497 DIKVWDFKGRDLKSRW----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR------ITDFCFS  566 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~----~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~------i~~l~~s  566 (764)
                      .|++||+.+.+....+    .+...|.+++|+|++.+|++++.|+.|++||+.+++....+.+|...      +....|+
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            9999999877654433    34588999999999999999999999999999999988888776532      3456788


Q ss_pred             CCCcEEEEEe------------CCCcEEEEEcCccceEEEEee-C-CceEEE-EEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          567 EDGKWLLSSG------------MDGSLRIWDVILARQIDAIHV-D-VSITAL-SLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       567 ~dg~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~-~-~~v~~l-~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      |++.++++++            .++.|++||..+|+++..+.. | ..|.++ +|+|+|++||+++ |+ .|+||+.+.
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-~i~iW~~~~  430 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY-HILIWSQQE  430 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS-EEEECCCC-
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC-cEEEEECCc
Confidence            8887777664            246799999999999988753 3 347777 6999999999876 66 699999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=317.44  Aligned_cols=331  Identities=13%  Similarity=0.207  Sum_probs=244.3

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC-------CCceeeEeccCCC------------CCCeeEEEecCC
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-------GDPRLLRFRSGHS------------APPLCIRFYANG  326 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~~~~~h~------------~~v~~i~~~~~~  326 (764)
                      .|.+.|++++|+|++++|++|+.||.|++|++....       ........+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478899999999999999999999999999998654       2334577778998            889999999988


Q ss_pred             --CEEEEEeCCCcEEEEEeecccccccccch-hhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          327 --RHILSAGQDRAFRLFSVIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       327 --~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                        ..|++++.|++|++|++............ ........ ......+.++.....        +               
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--------~---------------  161 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD-PTTVTTLRVPVFRPM--------D---------------  161 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEE--------E---------------
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccC-cccccceEeccccch--------h---------------
Confidence              89999999999999999875432111000 00000000 000000000000000        0               


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                       |....    ........+|...|.+++|+|+|+++++| .||.|++||+.++...............+|...|.+++|+
T Consensus       162 -~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (447)
T 3dw8_B          162 -LMVEA----SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH  235 (447)
T ss_dssp             -EEEEE----EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC
T ss_pred             -eeeec----cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC
Confidence             00000    11111223677899999999999999999 8999999999843332221111111234899999999999


Q ss_pred             CCC-CEEEEEeCCCeEEEEECCCCCe----eeeEecCc-------------ceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          484 STN-TLMISAGYHGDIKVWDFKGRDL----KSRWEVGC-------------SLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       484 ~~~-~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~-------------~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      |++ ++|++++.||.|++||+.+++.    ...+..+.             .|.+++|+|++++|++++. +.|++||+.
T Consensus       236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            998 9999999999999999999886    66666653             8999999999999999999 999999999


Q ss_pred             C-CeEEEEeecCCCC---------------eeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE--------------
Q 004270          546 A-LRMVRKFEGHTDR---------------ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--------------  595 (764)
Q Consensus       546 ~-~~~~~~~~~h~~~---------------i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~--------------  595 (764)
                      + ++++..+.+|...               +..++|+|++++|++++.||.|++||+.+++.+...              
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  394 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP  394 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCC
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCC
Confidence            7 8888899988642               234999999999999999999999999998876422              


Q ss_pred             -------------------eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          596 -------------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       596 -------------------~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                                         .....|.+++|+|+|.+||+++.++  +++|.-+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~--~~~~~~~  445 (447)
T 3dw8_B          395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN--LYIFQDK  445 (447)
T ss_dssp             CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC--EEEEECC
T ss_pred             ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce--eeeeccc
Confidence                               1223588999999999999998886  8999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-36  Score=318.42  Aligned_cols=339  Identities=9%  Similarity=0.066  Sum_probs=233.8

Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      ++.+.++|++++|+|++++||+|+.||.|++||+.++  +.+..+.. |...|.+++|+|+++ +|++++.||.|++||+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTC-CEEEEETTSSEEEC--
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCC-EEEEEeCCCeEEEEEc
Confidence            3446779999999999999999999999999999988  56666655 488999999999998 8999999999999999


Q ss_pred             CCce---eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEE
Q 004270          255 EKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       255 ~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~  330 (764)
                      .+++   ....+. +|...|.+++|+|++++|++++.|+.|++|+++..... .....+.+ |...|.+++|+|++++|+
T Consensus        85 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           85 RPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-WVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ----CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-CCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-eeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            9887   455555 79999999999999999999999999999998765321 23455556 999999999999999999


Q ss_pred             EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (764)
Q Consensus       331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (764)
                      +++.|+.+++||+............                                .|..-                 .
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~-----------------~  193 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEAS--------------------------------VWGSR-----------------L  193 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSC--------------------------------SSCSC-----------------C
T ss_pred             EEeCCCEEEEEEEEecccCCCcccc--------------------------------ccccc-----------------c
Confidence            9999999999998654322111000                                00000                 0


Q ss_pred             eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc----cceecCccccccccccCcEEEEEECCCC
Q 004270          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS----RGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                      .. ....... .|...+.+++|+|+|+++++|+.||.|++||+.++..    ...+.        +|...|.+++|+|++
T Consensus       194 ~~-~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          194 PF-NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--------LSQLPLRSLLWANES  263 (377)
T ss_dssp             CE-EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--------CSSSCEEEEEEEETT
T ss_pred             ch-hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--------CCCCceEEEEEcCCC
Confidence            00 1111122 5678999999999999999999999999999999887    55553        899999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCC--eeeeEecC----------------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270          487 TLMISAGYHGDIKVWDFKGRD--LKSRWEVG----------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (764)
Q Consensus       487 ~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~----------------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~  548 (764)
                      ++|++++.++.+ +|+.....  ....+...                .....+.|++....+......+...       .
T Consensus       264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~  335 (377)
T 3dwl_C          264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------S  335 (377)
T ss_dssp             EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------------
T ss_pred             CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc-------c
Confidence            999988876666 66655322  12222211                1123333333222222111111110       1


Q ss_pred             EEEEeecCCCCeeEEEEcCCC-c---EEEEEeCCCcEEEEEc
Q 004270          549 MVRKFEGHTDRITDFCFSEDG-K---WLLSSGMDGSLRIWDV  586 (764)
Q Consensus       549 ~~~~~~~h~~~i~~l~~s~dg-~---~l~s~s~dg~i~iwd~  586 (764)
                      .......|.+.|+++++.++. .   .|+|++.||.|++||+
T Consensus       336 ~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          336 ISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            112234699999999976543 3   6999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1e-34  Score=300.88  Aligned_cols=282  Identities=11%  Similarity=0.110  Sum_probs=226.6

Q ss_pred             CCcceEEEEEeCCeEEEEECC----------eEEEEecCc----------e--EEEecccccceEEEEEeCCEEEEEe--
Q 004270           55 LPKKIRALASYRDYTFAAYGN----------HIAVVKRAH----------Q--VATWSRHSAKVNLLLLFGEHILSID--  110 (764)
Q Consensus        55 ~~~~I~~~~~~~~~~~~a~g~----------~i~vw~~~~----------~--~~~~~~h~~~v~~l~~~g~~l~s~~--  110 (764)
                      ...||.|++|+||+.++++|+          .|++|+...          .  ...+.+|...|.+++++++.++++.  
T Consensus        13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~   92 (365)
T 4h5i_A           13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNE   92 (365)
T ss_dssp             CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCC
T ss_pred             CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECC
Confidence            356899999999999998853          399998421          1  1237899999999999999988874  


Q ss_pred             ---------cCCcEEEEEccCCcccccceeeEec-----CCccccEEEEeCCCCCCEEEEE--eCCCcEEEEeCCCCeEE
Q 004270          111 ---------IDGNMFIWAFKGIEENLAPVGHVKL-----DDKFTPTCIMHPDTYLNKVIVG--SQEGSLQLWNISTKKKL  174 (764)
Q Consensus       111 ---------~dg~v~vWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~l~~~--~~dg~i~iwd~~~~~~~  174 (764)
                               .|+++++|++...............     +...+..++|+|++  ++++++  +.|++|++||+++++++
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg--~~la~as~~~d~~i~iwd~~~~~~~  170 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG--TVAAIASSKVPAIMRIIDPSDLTEK  170 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS--SCEEEEESCSSCEEEEEETTTTEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC--CEEEEEECCCCCEEEEeECCCCcEE
Confidence                     4778999999876653333332222     23345678899999  666654  47899999999999999


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEE-eccCCCCEEEEEEeeCCCCEEEEEeCCC----cE
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSG----VI  249 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~d~~~~l~sg~~dg----~i  249 (764)
                      ..+. |...|.+++|+|+|++|++++.+ .+++|+..+++.+... ...|...|.+++|+|+++ ++++++.++    .+
T Consensus       171 ~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          171 FEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEE
T ss_pred             EEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEE
Confidence            9987 67889999999999999999854 5677777777766543 344578899999999999 888888776    68


Q ss_pred             EEEECCCcee----eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe-ccCCCCCCeeEEEec
Q 004270          250 SIWNLEKRRL----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYA  324 (764)
Q Consensus       250 ~iwd~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~i~~~~  324 (764)
                      ++|++.....    ...+. +|...|++++|+|++++|++|+.|++|++||+.+.    +++.. +.+|..+|++++|+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECT
T ss_pred             eecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECC
Confidence            8899876643    23344 78999999999999999999999999999998765    55554 579999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecc
Q 004270          325 NGRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~  346 (764)
                      ||++|++++.|++|+||++...
T Consensus       323 dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          323 DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.3e-34  Score=302.73  Aligned_cols=288  Identities=18%  Similarity=0.237  Sum_probs=241.8

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV  217 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~  217 (764)
                      ...+.+++.   +.|++|. |++|+|||..+|++++.+.  +|...|++++|+|+|++||+|+.||.|++||+.+++.+.
T Consensus       108 ~~~l~wS~~---n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          108 LNLVDWSSG---NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CBCEEECTT---SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceeEEECCC---CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            345668764   4677764 8999999999999887765  677889999999999999999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      .+..+ ...+.+++++  +. +|++|+.|+.+++||..... .+..+. +|...+..+.|+|++.++++++.|+.+++|+
T Consensus       184 ~~~~h-~~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          184 NMTSH-SARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EECCC-SSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeCC-CCceEEEeeC--CC-EEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCeeeeeeccccceEEe
Confidence            88765 7889888875  45 89999999999999988764 445555 8999999999999999999999999999999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCC-CEEEEE--eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      ..........+.....|...|.+++|+|++ ..++++  +.|++|++||+.++.....+.                    
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--------------------  318 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------------------  318 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------------------
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--------------------
Confidence            987766656677778999999999999954 555554  479999999987765433321                    


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEE
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERF  451 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~  451 (764)
                                                                       ....+.++.++++++.+++++  .||.|++|
T Consensus       319 -------------------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iw  349 (420)
T 4gga_A          319 -------------------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIW  349 (420)
T ss_dssp             -------------------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred             -------------------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence                                                             126788999999999998875  78999999


Q ss_pred             ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (764)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  513 (764)
                      |+.++..+..+.        +|.+.|++++|+|+|++|+||+.|++|++||+.........+
T Consensus       350 d~~~~~~v~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          350 KYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             ETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred             ECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence            999999988875        999999999999999999999999999999998765554443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-37  Score=319.98  Aligned_cols=321  Identities=10%  Similarity=0.093  Sum_probs=254.6

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceE
Q 004270          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL  216 (764)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~  216 (764)
                      ...+..++|+|||  +.+++++.|++|+  |...++.+   ++|...|.+++|+|+|       .++.+.+|+   ++..
T Consensus        15 ~~~v~sv~~SpDG--~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~   77 (588)
T 2j04_A           15 EDWKNNLTWARDG--TLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN   77 (588)
T ss_dssp             SSSSCCEEECTTS--CEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred             hccEEEEEECCCC--CEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence            3667889999999  8999999999999  76666544   7999999999999998       455555555   3333


Q ss_pred             EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc-----CeeEEEEecCCCEEEEEcCCCc
Q 004270          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNS  291 (764)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~~~d~~  291 (764)
                      ..+...+...|.+++|+|||. .||+++.||.|++||.++  ++..+.  |..     .|.+++|+|||++|++|+.||+
T Consensus        78 ~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGt  152 (588)
T 2j04_A           78 GLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGE  152 (588)
T ss_dssp             CSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred             eEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence            333323378899999999999 899999999999999544  444444  444     5999999999999999999999


Q ss_pred             EEEEEecCCCCC-c--eeeEec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          292 IKMWIFDTTDGD-P--RLLRFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       292 i~vw~~~~~~~~-~--~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                      |++|++..+... +  -.+..+    .+|...|.+++|+|||  +++++.|+++++|++........             
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~-------------  217 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV-------------  217 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC-------------
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc-------------
Confidence            999998765311 1  134443    6788999999999999  88999999999999876542100             


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                                                                       .+.+.  ..|...|.+++|+  |+.+++++ 
T Consensus       218 -------------------------------------------------~~tL~--~~h~~~V~svaFs--g~~LASa~-  243 (588)
T 2j04_A          218 -------------------------------------------------SRMIQ--NASRRKITDLKIV--DYKVVLTC-  243 (588)
T ss_dssp             -------------------------------------------------EEEEE--CCCSSCCCCEEEE--TTEEEEEC-
T ss_pred             -------------------------------------------------eeeec--ccccCcEEEEEEE--CCEEEEEe-
Confidence                                                             00000  1344789999999  68999887 


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEE
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~  522 (764)
                      +|.|++|++.++......        .+|...|..++|  +|++..+++++.||+ ++|.++               .++
T Consensus       244 ~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------~~~  299 (588)
T 2j04_A          244 PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------ELH  299 (588)
T ss_dssp             SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------SEE
T ss_pred             CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------cEE
Confidence            699999999988774433        289999999999  999999999999999 999987               256


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      ++||+..+++.  |+++++|+...+. ...+.+ ...|.+++|||||+.+|+++
T Consensus       300 ~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          300 VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence            99999988875  9999999986554 334444 66799999999999999886

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-34  Score=303.49  Aligned_cols=277  Identities=16%  Similarity=0.222  Sum_probs=233.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKG-WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +.+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.++
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~  182 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH-QARVGCL  182 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC-CCceEEE
Confidence            3488899999999999999999888876 8999999999999999999999999999999999999988754 8899999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          231 AFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      +|+  +. ++++|+.||.|++||++ .+.....+. +|.+.|.+++|+|++++|++++.|+.|++||+...    .....
T Consensus       183 ~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~  254 (401)
T 4aez_A          183 SWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----IPKFT  254 (401)
T ss_dssp             EEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----SEEEE
T ss_pred             EEC--CC-EEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----CccEE
Confidence            994  44 89999999999999998 455666666 89999999999999999999999999999998764    56667


Q ss_pred             ccCCCCCCeeEEEecCC-CEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          310 RSGHSAPPLCIRFYANG-RHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~-~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                      +.+|...|.+++|+|++ ..+++++  .|+.|++||+.++.....+.                                 
T Consensus       255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---------------------------------  301 (401)
T 4aez_A          255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---------------------------------  301 (401)
T ss_dssp             ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---------------------------------
T ss_pred             ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---------------------------------
Confidence            77899999999999966 4555654  69999999987654333221                                 


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCcccceecC
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLD  464 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~  464 (764)
                                                          +...+.+++|+|+++++++  |+.+|.|++|++.++....... 
T Consensus       302 ------------------------------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-  344 (401)
T 4aez_A          302 ------------------------------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-  344 (401)
T ss_dssp             ------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-
T ss_pred             ------------------------------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-
Confidence                                                2267999999999999999  5589999999999876554432 


Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                           ..+|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus       345 -----~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          345 -----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             -----EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             -----ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence                 1489999999999999999999999999999999988776544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-35  Score=309.70  Aligned_cols=301  Identities=13%  Similarity=0.152  Sum_probs=230.3

Q ss_pred             EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV  210 (764)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~  210 (764)
                      ...+...+..++|+|++  ++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         7 ~~~~~~~v~~~~~s~~g--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQR--TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEECSSCCSCCEECSSS--SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             EecCCCcEEEEEECCCC--CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            34456678889999999  89999999999999999988  788889999999999999999999999999999999999


Q ss_pred             cCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCCEEE
Q 004270          211 RYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLM  284 (764)
Q Consensus       211 ~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~  284 (764)
                      .+++   ....+.. |...|.+++|+|+++ +|++|+.|+.|++||+++++   ....+...|...|.+++|+|++++|+
T Consensus        85 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           85 RPDGTWKQTLVLLR-LNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ----CCCCEEECCC-CSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CCCCceeeeeEecc-cCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            9887   4555544 488999999999998 89999999999999999887   46666633999999999999999999


Q ss_pred             EEcCCCcEEEEEecCCC--------------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          285 SASADNSIKMWIFDTTD--------------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~~--------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      +++.|+.|++||+....              ....++..+ +|...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            99999999999986332              112455555 899999999999999999999999999999998765411


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      ..                                                                +.....|...+.++
T Consensus       242 ~~----------------------------------------------------------------~~~~~~~~~~v~~~  257 (377)
T 3dwl_C          242 RA----------------------------------------------------------------LITVKLSQLPLRSL  257 (377)
T ss_dssp             EE----------------------------------------------------------------CCCEECSSSCEEEE
T ss_pred             ee----------------------------------------------------------------eEeecCCCCceEEE
Confidence            10                                                                11112455789999


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCc-c-cceecC------------------------------------------cc
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGI-S-RGSYLD------------------------------------------MS  466 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~-~-~~~~~~------------------------------------------~~  466 (764)
                      +|+|+|+++++|+.++.+ +|+..... . ...+..                                          ..
T Consensus       258 ~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  336 (377)
T 3dwl_C          258 LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSI  336 (377)
T ss_dssp             EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------
T ss_pred             EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccc
Confidence            999999999999776666 66654221 0 000000                                          00


Q ss_pred             ccccccccCcEEEEEECCCC-C---EEEEEeCCCeEEEEEC
Q 004270          467 ERSNYAHNGEVVGVACDSTN-T---LMISAGYHGDIKVWDF  503 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~-~---~l~s~~~dg~v~iwd~  503 (764)
                      ......|...|+++++.+.. .   .++|++.||.|++||+
T Consensus       337 ~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          337 SSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            00112499999999976543 3   6999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.9e-34  Score=305.44  Aligned_cols=296  Identities=20%  Similarity=0.307  Sum_probs=228.3

Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      ..+|...|.++.+  ++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++|  +++ +|++|+.||.|++||+.+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY--DER-VIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC--CSS-EEEEEETTSCEEEEESSS
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE--CCC-EEEEEcCCCeEEEEECCC
Confidence            3466778888876  7899999999999999999999999888765 889999999  666 999999999999999999


Q ss_pred             ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          257 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      ++.+..+. +|...|.+++|++  ..+++++.|+.|++||+...... .......+|...|.+++|  +++++++++.||
T Consensus       203 ~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          203 GEMLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             CCEEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CcEEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            99999988 8999999999964  59999999999999998765322 233566788888888888  677888888888


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .|++||+.++..                                                                    
T Consensus       277 ~i~vwd~~~~~~--------------------------------------------------------------------  288 (435)
T 1p22_A          277 TIKVWNTSTCEF--------------------------------------------------------------------  288 (435)
T ss_dssp             EEEEEETTTCCE--------------------------------------------------------------------
T ss_pred             eEEEEECCcCcE--------------------------------------------------------------------
Confidence            888888654321                                                                    


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                                                                ...+        .+|...|.+++++  ++++++++.||
T Consensus       289 ------------------------------------------~~~~--------~~~~~~v~~~~~~--~~~l~~g~~dg  316 (435)
T 1p22_A          289 ------------------------------------------VRTL--------NGHKRGIACLQYR--DRLVVSGSSDN  316 (435)
T ss_dssp             ------------------------------------------EEEE--------ECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             ------------------------------------------EEEE--------cCCCCcEEEEEeC--CCEEEEEeCCC
Confidence                                                      1112        2677778888874  56888888888


Q ss_pred             eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe---------EEEEeecCCCCeeEEEEc
Q 004270          497 DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFS  566 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~---------~~~~~~~h~~~i~~l~~s  566 (764)
                      .|++||+.+++.+..+..+ ..+.++++  ++.+|++|+.||.|++||+.+++         .+..+.+|.+.|++++| 
T Consensus       317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  393 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-  393 (435)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred             eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence            8888888888888877755 67888887  68888999999999999987766         78899999999999999 


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       567 ~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                       ++++|++++.||+|++||+.++..........+..++.|.+
T Consensus       394 -~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  434 (435)
T 1p22_A          394 -DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS  434 (435)
T ss_dssp             -CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             -CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence             78899999999999999999887776666556666666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=7.4e-33  Score=327.59  Aligned_cols=443  Identities=12%  Similarity=0.061  Sum_probs=335.1

Q ss_pred             cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEE
Q 004270           92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQL  165 (764)
Q Consensus        92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~i  165 (764)
                      +...+....+.+++|+.++. +.|.+|++.+++.     ..+..+...+...+|+|++  ++|+.++.+      ..|++
T Consensus        13 ~~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~-----~~lt~~~~~v~~~~~SPDG--~~la~~s~~~~~~~~~~i~~   84 (1045)
T 1k32_A           13 MPNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGST-----RKIVSNLGVINNARFFPDG--RKIAIRVMRGSSLNTADLYF   84 (1045)
T ss_dssp             CCCCCEEEEEETTEEEEEET-TEEEEEETTTCCE-----EEEECSSSEEEEEEECTTS--SEEEEEEEESTTCCEEEEEE
T ss_pred             ccceEeCcEEeCCEEEEEEC-CcEEEEECCCCcE-----EEeeeCCCcccCeEECCCC--CEEEEEEeeccCCCCCeEEE
Confidence            45567777888889888875 7899999988765     4556677888899999999  888887653      47999


Q ss_pred             EeCCCCeEEEEEcCCCCCe-------EEEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270          166 WNISTKKKLYEFKGWGSSI-------SSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (764)
Q Consensus       166 wd~~~~~~~~~~~~h~~~i-------~~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~f  232 (764)
                      ||+.+++ ...+..|...+       ..++|||||+++++++.+      ..|.+|++.+++.. .+..+   ....++|
T Consensus        85 ~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~---~~~~~~~  159 (1045)
T 1k32_A           85 YNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLG---PATHILF  159 (1045)
T ss_dssp             EETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSC---SCSEEEE
T ss_pred             EECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCC---Ccceeee
Confidence            9998877 57788888888       999999999977777644      46888888776643 33332   2346779


Q ss_pred             eeCCCCEEEEEeC------------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          233 SSDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       233 s~d~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      +| |  ++++++.            +....+|....+.....+. +|...+.++.|+++ .++++++.|+.+++|.++..
T Consensus       160 sp-G--~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~-~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~  234 (1045)
T 1k32_A          160 AD-G--RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD  234 (1045)
T ss_dssp             ET-T--EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred             CC-C--EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc-CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence            99 6  7777652            2345666433333344454 89999999999998 67778888999999998764


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      ...   ...+..|. .+...+|+|||+.++++. ++.|++|++... ....+....                        
T Consensus       235 g~~---~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~------------------------  284 (1045)
T 1k32_A          235 GKD---LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGD------------------------  284 (1045)
T ss_dssp             SCS---CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCC------------------------
T ss_pred             CCc---ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCc------------------------
Confidence            432   23333444 467789999999998875 888999987221 111110000                        


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECcCCccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                       .........+...+.+++|+ |+|+++++++ ++.+.+|+..++...
T Consensus       285 ---------------------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          285 ---------------------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             ---------------------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             ---------------------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence                                             00000000122467889999 9999999887 889999999877654


Q ss_pred             ceecCccccccccccC-cEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC
Q 004270          460 GSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIK-VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL  537 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~  537 (764)
                      . +        ..|.. .+..++|+ +|+.+++++.++.+. +|++.+++......+...+..++|+|||++|++++.++
T Consensus       331 ~-~--------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~  400 (1045)
T 1k32_A          331 K-V--------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF  400 (1045)
T ss_dssp             E-C--------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             E-c--------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCC
Confidence            3 2        25666 89999999 999999999888899 99998887655543447899999999999999999999


Q ss_pred             eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC----------cEEEEEcCccceEEEEee-CCceEEEEE
Q 004270          538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------SLRIWDVILARQIDAIHV-DVSITALSL  606 (764)
Q Consensus       538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~-~~~v~~l~~  606 (764)
                      .|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++||+.+++ +..+.. ...+.+++|
T Consensus       401 ~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~  479 (1045)
T 1k32_A          401 EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF  479 (1045)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE
T ss_pred             eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE
Confidence            999999999998888888999999999999999999887654          89999999887 444443 345889999


Q ss_pred             cCCCCeEEEEEeCCCeEEEEec
Q 004270          607 SPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       607 sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      +|||++|++++.++ ...+|+.
T Consensus       480 spdG~~l~~~s~~~-~~~~~~~  500 (1045)
T 1k32_A          480 DADSKNLYYLSYRS-LDPSPDR  500 (1045)
T ss_dssp             CTTSCEEEEEESCC-CCCEECS
T ss_pred             cCCCCEEEEEeccc-CCcCcch
Confidence            99999999998876 4777764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.3e-34  Score=293.79  Aligned_cols=315  Identities=15%  Similarity=0.220  Sum_probs=233.2

Q ss_pred             EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcE
Q 004270          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSI  292 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i  292 (764)
                      +..+|.+.|++++|+|+++ +|++|+.||.|++||+.++    +....+. +|...|.+++|+|  ++.+|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4455689999999999999 9999999999999999876    4556666 8999999999999  68999999999999


Q ss_pred             EEEEecCCCCCc-----eeeEeccCCCCCCeeEEEecC--CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          293 KMWIFDTTDGDP-----RLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       293 ~vw~~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      ++|+++......     ..+..+.+|...|.+++|+|+  ++++++++.|+.|++||+.+......+.....        
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------  155 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE--------  155 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE--------
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc--------
Confidence            999998764322     556777899999999999998  99999999999999999987765444321000        


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEE
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLG  442 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g  442 (764)
                                                                     ..........+...+.+++++|+   +++++++
T Consensus       156 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  188 (351)
T 3f3f_A          156 -----------------------------------------------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS  188 (351)
T ss_dssp             -----------------------------------------------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred             -----------------------------------------------ccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence                                                           00001112245678999999997   9999999


Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~  517 (764)
                      +.++.+.+|+...+.......      ..+|...|++++|+|++    ++|++++.||.|++||+.++......... ..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~------~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  262 (351)
T 3f3f_A          189 ALEQAIIYQRGKDGKLHVAAK------LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN  262 (351)
T ss_dssp             ETTEEEEEEECTTSCEEEEEE------CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred             cCCCcEEEEccCCCceeeeee------cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence            999999888887776522221      24899999999999998    89999999999999999876544333222 33


Q ss_pred             eEEEEEeecCCEEEEE----eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270          518 LVKIVYHRVNGLLATV----ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  593 (764)
Q Consensus       518 i~~~~~s~~~~~la~~----~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  593 (764)
                      ......++....++.+    .....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            3333444444444433    334566777777788899999999999999999999999999999999999999987666


Q ss_pred             EEe
Q 004270          594 AIH  596 (764)
Q Consensus       594 ~~~  596 (764)
                      .+.
T Consensus       343 ~~~  345 (351)
T 3f3f_A          343 CMS  345 (351)
T ss_dssp             EEE
T ss_pred             hee
Confidence            554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-33  Score=283.76  Aligned_cols=254  Identities=14%  Similarity=0.234  Sum_probs=211.8

Q ss_pred             EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270           87 ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~  164 (764)
                      ..+.+|...|.+++|  +|++|++++.|++|+|||+.+...  ..+.++..|...+..++|+|+...+.|++|+.||+|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            357899999999997  699999999999999999975422  1267788888888899998642117899999999999


Q ss_pred             EEeCCCCe--EEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCce--EEEEeccCCCCEEEEEEeeC---
Q 004270          165 LWNISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSD---  235 (764)
Q Consensus       165 iwd~~~~~--~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d---  235 (764)
                      +||+++++  .+..+.+|...|.+++|+|+  +.+|++|+.||.|++||++++..  ...+. .|...|.+++|+|+   
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC--
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCccc
Confidence            99998874  66788899999999999998  89999999999999999987642  33443 45789999999997   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEECCCce----eeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEec
Q 004270          236 ----------GQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFD  298 (764)
Q Consensus       236 ----------~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~  298 (764)
                                ++ +|++|+.|+.|++||+++++    ....+. +|...|.+++|+|++   .+|++++.|++|++|+++
T Consensus       160 ~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          160 EDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ----------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                      34 89999999999999998765    555666 899999999999985   799999999999999987


Q ss_pred             CCCCCcee-eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          299 TTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       299 ~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ........ .....+|...|.+++|+|++++|++++.|+.|++|+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            65332211 111257888999999999999999999999999999763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.1e-33  Score=282.74  Aligned_cols=282  Identities=17%  Similarity=0.233  Sum_probs=235.8

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (764)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (764)
                      ..+.|++++   .|++| .|++|+|||+.++++++.+.  +|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus        29 ~~l~WS~~~---~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           29 NLVDWSSGN---VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             BCEEECTTS---EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eEEEECCCC---EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            456788775   56665 58999999999999888775  6788899999999999999999999999999999999998


Q ss_pred             EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      +..+ ...+.++++  ++. ++++|+.++.+++|+............+|...+..+.+.+++++|++++.|+.|++||+.
T Consensus       105 ~~~h-~~~~~~~~~--~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          105 MTSH-SARVGSLSW--NSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EECC-SSCEEEEEE--ETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             ecCc-cceEEEeec--CCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            8765 677776555  455 899999999999999987754433333899999999999999999999999999999998


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCCCEE---EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHI---LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l---~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (764)
                      ..............|...|.++.++|++..+   ++++.++.+++|+..........                       
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-----------------------  237 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----------------------  237 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-----------------------
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-----------------------
Confidence            7765555666777889999999999965433   35567899999997654322211                       


Q ss_pred             eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEEC
Q 004270          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNL  453 (764)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~  453 (764)
                                                                    .+...+..+.++++++.+++++  .||.|++||+
T Consensus       238 ----------------------------------------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~  271 (318)
T 4ggc_A          238 ----------------------------------------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  271 (318)
T ss_dssp             ----------------------------------------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ----------------------------------------------cceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence                                                          1236788999999999988765  7899999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      .+++.+..+.        +|.+.|++++|+|++++|+|++.||+|++||+.+..
T Consensus       272 ~~~~~~~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          272 PTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999988875        899999999999999999999999999999987643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=295.05  Aligned_cols=298  Identities=15%  Similarity=0.208  Sum_probs=235.1

Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      ..|+....+.+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+......|.+.|.+++|+|+++ +
T Consensus        22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  100 (368)
T 3mmy_A           22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-K  100 (368)
T ss_dssp             -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-E
T ss_pred             ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-E
Confidence            34566677888889999999999999999   69999999999999999998 5555343444589999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE--ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF--FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      |++++.||.|++||+++++.....  .|...|.+++|  +|++.+|++++.|+.|++||+...    ..+..+..|. .+
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~-~~  173 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----NPMMVLQLPE-RC  173 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----SCSEEEECSS-CE
T ss_pred             EEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----cEEEEEecCC-Cc
Confidence            999999999999999999877744  59999999999  889999999999999999988765    3344444443 44


Q ss_pred             eeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      .++.+.  +..+++++.++.+.+|++........                                              
T Consensus       174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------------------------------  205 (368)
T 3mmy_A          174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFR----------------------------------------------  205 (368)
T ss_dssp             EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEE----------------------------------------------
T ss_pred             eEEEec--CCeeEEEeCCCcEEEEEeccccchhh----------------------------------------------
Confidence            555544  44777788888888888753221100                                              


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                                                                      ..      ...+...+
T Consensus       206 ----------------------------------------------------------------~~------~~~~~~~~  215 (368)
T 3mmy_A          206 ----------------------------------------------------------------RI------ESPLKHQH  215 (368)
T ss_dssp             ----------------------------------------------------------------EC------CCSCSSCE
T ss_pred             ----------------------------------------------------------------hc------cccccCCC
Confidence                                                                            00      01222333


Q ss_pred             EEEEECCCCCE----EEEEeCCCeEEEEECCCC---CeeeeEecCc-------------ceEEEEEeecCCEEEEEeCCC
Q 004270          478 VGVACDSTNTL----MISAGYHGDIKVWDFKGR---DLKSRWEVGC-------------SLVKIVYHRVNGLLATVADDL  537 (764)
Q Consensus       478 ~~l~~~~~~~~----l~s~~~dg~v~iwd~~~~---~~~~~~~~~~-------------~i~~~~~s~~~~~la~~~~d~  537 (764)
                      .++++.++...    +++++.||.|++|++...   .....+..+.             .|.+++|+|++++|++++.||
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg  295 (368)
T 3mmy_A          216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG  295 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred             ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence            44444333333    899999999999999887   4455665553             699999999999999999999


Q ss_pred             eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      .|++||+.+++++..+.+|...|++++|+|||++|++++.|+..+.|++.
T Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            99999999999999999999999999999999999999998866655544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=301.29  Aligned_cols=290  Identities=17%  Similarity=0.304  Sum_probs=232.5

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeecccc------------cCeeEEEEecCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----------LQSVIREAHD------------NAIISLHFFANE  280 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~~h~------------~~v~~l~~~~~~  280 (764)
                      .+.|++++|+|+|+ +|++|+.||.|++||+.+++           ....+. +|.            ..|.+++|+|++
T Consensus        28 ~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           28 ADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCC
Confidence            57999999999999 99999999999999998876           466776 898            889999999998


Q ss_pred             --CEEEEEcCCCcEEEEEecCCCCCc-----------------------------------eee-EeccCCCCCCeeEEE
Q 004270          281 --PVLMSASADNSIKMWIFDTTDGDP-----------------------------------RLL-RFRSGHSAPPLCIRF  322 (764)
Q Consensus       281 --~~l~s~~~d~~i~vw~~~~~~~~~-----------------------------------~~~-~~~~~h~~~v~~i~~  322 (764)
                        ..|++++.|++|++|++.......                                   ... ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              799999999999999987532100                                   001 224689999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      +|++++|+++ .|+.|++||+........                                                   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~---------------------------------------------------  213 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFN---------------------------------------------------  213 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEE---------------------------------------------------
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceee---------------------------------------------------
Confidence            9999999998 799999999874321111                                                   


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcc----cceecCccccccccccC--
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGIS----RGSYLDMSERSNYAHNG--  475 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~h~~--  475 (764)
                       +.+...        .....|...+.+++|+|++ +++++|+.||.|++||+.++..    ...+.        .|..  
T Consensus       214 -~~~~~~--------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~  276 (447)
T 3dw8_B          214 -IVDIKP--------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--------EPEDPS  276 (447)
T ss_dssp             -EEECCC--------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--------CC----
T ss_pred             -eeeccc--------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--------cCCCcc
Confidence             000000        0122456889999999999 9999999999999999998876    44443        4544  


Q ss_pred             ----------cEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcc----------------eEEEEEeecCC
Q 004270          476 ----------EVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCS----------------LVKIVYHRVNG  528 (764)
Q Consensus       476 ----------~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~----------------i~~~~~s~~~~  528 (764)
                                .|.+++|+|++++|++++. +.|++||+.+ ++++..+..+..                +..++|+|+++
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~  355 (447)
T 3dw8_B          277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS  355 (447)
T ss_dssp             -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred             ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence                      9999999999999999999 9999999997 888888877654                33499999999


Q ss_pred             EEEEEeCCCeEEEEEccCCeEEEEeec---------------------------------CCCCeeEEEEcCCCcEEEEE
Q 004270          529 LLATVADDLVIRLFDVVALRMVRKFEG---------------------------------HTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       529 ~la~~~~d~~i~v~d~~~~~~~~~~~~---------------------------------h~~~i~~l~~s~dg~~l~s~  575 (764)
                      +|++|+.||.|++||+.+++.+ .+.+                                 +...|..++|+|++++||++
T Consensus       356 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          356 VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             EEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             EEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence            9999999999999999998876 3332                                 23568899999999999999


Q ss_pred             eCCCcEEEEEcC
Q 004270          576 GMDGSLRIWDVI  587 (764)
Q Consensus       576 s~dg~i~iwd~~  587 (764)
                      +.++ +++|.-+
T Consensus       435 ~~~~-~~~~~~~  445 (447)
T 3dw8_B          435 TTNN-LYIFQDK  445 (447)
T ss_dssp             CSSC-EEEEECC
T ss_pred             ecce-eeeeccc
Confidence            8776 8888643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.8e-33  Score=287.22  Aligned_cols=280  Identities=10%  Similarity=0.134  Sum_probs=239.2

Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEE
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW  295 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw  295 (764)
                      ...|.+.|++++|+|+++ +|++++.||.|++||+.+++   ....+. +|...|.+++|+|+++ +|++++.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            345688999999999998 89999999999999998876   234444 7999999999999999 99999999999999


Q ss_pred             Ee-cCCCCCceeeEeccC--CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec---------ccccccccchhhhHHHhh
Q 004270          296 IF-DTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ---------DQQSRELSQRHVAKRARK  363 (764)
Q Consensus       296 ~~-~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~  363 (764)
                      ++ ...     ....+.+  |...|.+++|+| ++.+++++.|+.|++||+.+         .+....+           
T Consensus        85 d~~~~~-----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----------  147 (342)
T 1yfq_A           85 DLIGSP-----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-----------  147 (342)
T ss_dssp             CSSSSS-----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----------
T ss_pred             EeccCC-----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----------
Confidence            88 654     2355667  999999999999 99999999999999999865         2111110           


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                                .+...+.++++++++  +++++
T Consensus       148 ----------------------------------------------------------~~~~~v~~~~~~~~~--l~~~~  167 (342)
T 1yfq_A          148 ----------------------------------------------------------KVKNKIFTMDTNSSR--LIVGM  167 (342)
T ss_dssp             ----------------------------------------------------------SSCCCEEEEEECSSE--EEEEE
T ss_pred             ----------------------------------------------------------eeCCceEEEEecCCc--EEEEe
Confidence                                                                      145789999999888  99999


Q ss_pred             cCCcEEEEECcC-CcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------CeeeeEecC
Q 004270          444 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG  515 (764)
Q Consensus       444 ~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~  515 (764)
                      .+|.|++||+.+ +.......      ...|...+.+++|+| +++++++++.||.|++|+++..      +....+..+
T Consensus       168 ~d~~i~i~d~~~~~~~~~~~~------~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          168 NNSQVQWFRLPLCEDDNGTIE------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             STTEEEEEESSCCTTCCCEEE------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             CCCeEEEEECCccccccceee------ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            999999999988 54322111      137888999999999 9999999999999999999877      777777655


Q ss_pred             -c---------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEeCCCc-EEE
Q 004270          516 -C---------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGS-LRI  583 (764)
Q Consensus       516 -~---------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s~dg~-i~i  583 (764)
                       .         .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|++++  |++++|++++.||+ .+.
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence             2         8999999999999999999999999999999999999998 99999999  99999999999998 555


Q ss_pred             EEc
Q 004270          584 WDV  586 (764)
Q Consensus       584 wd~  586 (764)
                      |..
T Consensus       320 ~~~  322 (342)
T 1yfq_A          320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.5e-33  Score=281.15  Aligned_cols=247  Identities=15%  Similarity=0.199  Sum_probs=203.9

Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      ..+.+|...|.+++|+|+|++|++++.|++|++|++......                                      
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~--------------------------------------   44 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK--------------------------------------   44 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--------------------------------------
Confidence            345789999999999999999999999999999998532110                                      


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECcCCcc--cceec
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGIS--RGSYL  463 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~~g~i~i~~~~~~~~--~~~~~  463 (764)
                                                  .+....+|...|.+++|+++  |++|++|+.||.|++||+.++..  ...+ 
T Consensus        45 ----------------------------~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-   95 (297)
T 2pm7_B           45 ----------------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-   95 (297)
T ss_dssp             ----------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-
T ss_pred             ----------------------------EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-
Confidence                                        00111257789999999864  89999999999999999988742  2233 


Q ss_pred             CccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCe--eeeEe-cCcceEEEEEeec------------
Q 004270          464 DMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDL--KSRWE-VGCSLVKIVYHRV------------  526 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~~~-~~~~i~~~~~s~~------------  526 (764)
                             ..|...|.+++|+|+  +.+|++++.|+.|++||+.++..  ...+. +...+.+++|+|+            
T Consensus        96 -------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  168 (297)
T 2pm7_B           96 -------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (297)
T ss_dssp             -------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred             -------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence                   379999999999997  88999999999999999987632  23333 4478999999997            


Q ss_pred             -CCEEEEEeCCCeEEEEEccCCe----EEEEeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCccc--eE-EEE
Q 004270          527 -NGLLATVADDLVIRLFDVVALR----MVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILAR--QI-DAI  595 (764)
Q Consensus       527 -~~~la~~~~d~~i~v~d~~~~~----~~~~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~--~~-~~~  595 (764)
                       +++|++|+.|+.|++||+.+++    ....+.+|...|.+++|+|++   ++|++++.|++|++||+.++.  .. ..+
T Consensus       169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~  248 (297)
T 2pm7_B          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL  248 (297)
T ss_dssp             -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred             CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee
Confidence             5799999999999999998765    677899999999999999995   899999999999999998753  12 222


Q ss_pred             ---eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          596 ---HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       596 ---~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                         .+...|.+++|+|+|++||+++.|+ .|++|+..
T Consensus       249 ~~~~~~~~v~~~~~s~~g~~las~~~D~-~v~lw~~~  284 (297)
T 2pm7_B          249 KEEKFPDVLWRASWSLSGNVLALSGGDN-KVTLWKEN  284 (297)
T ss_dssp             SSSCCSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred             ecccCCCcEEEEEECCCCCEEEEEcCCC-cEEEEEEC
Confidence               2244599999999999999999999 59999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.2e-33  Score=298.35  Aligned_cols=236  Identities=21%  Similarity=0.359  Sum_probs=208.5

Q ss_pred             ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270           89 WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (764)
Q Consensus        89 ~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~  168 (764)
                      ..+|...|.++.+++++|++++.||.|++||+.+++.    ...+..|...+..+.+  ++  +.+++|+.||.|++||+
T Consensus       129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~--~~--~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC----KRILTGHTGSVLCLQY--DE--RVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE----EEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEES
T ss_pred             ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE----EEEEcCCCCcEEEEEE--CC--CEEEEEcCCCeEEEEEC
Confidence            4567888999999999999999999999999998887    6677777776666555  56  78999999999999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270          169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      .+++.+..+.+|...|.+++|++  +++++|+.||.|++||+.+++...  .....|...|.+++|  +++ ++++|+.|
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~d  275 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGD  275 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETT
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCC
Confidence            99999999999999999999975  589999999999999999887652  333445889999999  566 89999999


Q ss_pred             CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (764)
                      |.|++||+++++.+..+. +|...|.++.|.  +.++++++.||.|++||+...    ..+..+.+|...|.+++|  ++
T Consensus       276 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~--~~  346 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DN  346 (435)
T ss_dssp             SEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEC--CS
T ss_pred             CeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEe--cC
Confidence            999999999999999998 899999999994  679999999999999998765    567778899999999999  78


Q ss_pred             CEEEEEeCCCcEEEEEeecc
Q 004270          327 RHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       327 ~~l~s~~~dg~i~i~d~~~~  346 (764)
                      .+|++++.||.|++||+...
T Consensus       347 ~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             SEEEEEETTSCEEEEEHHHH
T ss_pred             CEEEEEeCCCcEEEEECCCC
Confidence            89999999999999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=298.78  Aligned_cols=336  Identities=18%  Similarity=0.175  Sum_probs=239.5

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCC
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSD--GQPLLASGASS  246 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~d  246 (764)
                      |+++..+.+|...|++++|+|++++||+|+.||.|++||+.  +++.+..+..+ ...|++++|+++  +. +|++|+.|
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~-~l~s~~~d   78 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGT-ILASCSYD   78 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCS-EEEEEETT
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCC-EEEEeccC
Confidence            45677889999999999999999999999999999999998  45566666554 889999999977  77 99999999


Q ss_pred             CcEEEEECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          247 GVISIWNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       247 g~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      |.|++||+.+++  ....+. .|...|.+++|+|+  +.+|++++.|+.|++|++.....  .....+.+|...|.+++|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEE
T ss_pred             CEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEE
Confidence            999999999987  555665 79999999999999  89999999999999999876643  233455689999999999


Q ss_pred             ec-------------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          323 YA-------------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       323 ~~-------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      +|             ++.++++++.|+.|++||+........                                      
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------------------------  197 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV--------------------------------------  197 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE--------------------------------------
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee--------------------------------------
Confidence            99             577777777777777777654321100                                      


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                                                                          ....+       
T Consensus       198 --------------------------------------------------------------------~~~~~-------  202 (379)
T 3jrp_A          198 --------------------------------------------------------------------LESTL-------  202 (379)
T ss_dssp             --------------------------------------------------------------------EEEEE-------
T ss_pred             --------------------------------------------------------------------eEEEE-------
Confidence                                                                                00111       


Q ss_pred             cccccCcEEEEEECCC---CCEEEEEeCCCeEEEEECCCCCee---eeE---ecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270          470 NYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLK---SRW---EVGCSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~---~~~---~~~~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                       .+|...|.+++|+|+   +++|++++.||.|++||+.++...   ...   .+...+.+++|+|++++|++++.||.|+
T Consensus       203 -~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          203 -EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             -CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             -ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence             378899999999999   899999999999999999886421   222   2457899999999999999999999999


Q ss_pred             EEEccCCeEEEEee---c-----CCCCeeEEEEcCC--Cc-EEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCC
Q 004270          541 LFDVVALRMVRKFE---G-----HTDRITDFCFSED--GK-WLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  609 (764)
Q Consensus       541 v~d~~~~~~~~~~~---~-----h~~~i~~l~~s~d--g~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~  609 (764)
                      +|++........+.   .     +...+....|...  .. .++....+..+.++..    .....+...+.....|++|
T Consensus       282 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~fs~~  357 (379)
T 3jrp_A          282 LWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKL----IMKERRFTASYTFAKFSTG  357 (379)
T ss_dssp             EEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHH----HHHHTTCCTTCCCEEEETT
T ss_pred             EEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHh----hhhhccccCcceeeEECCC
Confidence            99998553332221   1     1122333344321  01 1111111111111110    0011112345667899999


Q ss_pred             CCeEEEEEeCCCeEEEEecc
Q 004270          610 MDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       610 g~~lat~~~d~~~i~lW~~~  629 (764)
                      |.+|+....+..+|+.+.+.
T Consensus       358 g~~l~~~~~~~~~~~~~~~~  377 (379)
T 3jrp_A          358 SMLLTKDIVGKSGVSIKRLP  377 (379)
T ss_dssp             TEEEEECTTSSSSEEEEECC
T ss_pred             CeEeeecccccccEEEEecc
Confidence            99998887776668888765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5e-33  Score=287.10  Aligned_cols=272  Identities=14%  Similarity=0.165  Sum_probs=234.8

Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV  343 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~  343 (764)
                      .+|.+.|.+++|+|++++|++++.|+.|++|+++..... .......+|...|.+++|+|+++ +|++++.||.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            379999999999999999999999999999999876422 22344458999999999999999 9999999999999998


Q ss_pred             -ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          344 -IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       344 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                       ..+.. ..                                                                    ...
T Consensus        87 ~~~~~~-~~--------------------------------------------------------------------~~~   97 (342)
T 1yfq_A           87 IGSPSF-QA--------------------------------------------------------------------LTN   97 (342)
T ss_dssp             SSSSSE-EE--------------------------------------------------------------------CBS
T ss_pred             ccCCce-Ee--------------------------------------------------------------------ccc
Confidence             65422 10                                                                    013


Q ss_pred             --CCCCeEEEEEccCCCEEEEEecCCcEEEEECcC---------CcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          423 --NPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       423 --~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                        |...|.+++|+| ++++++++.||.|++||+.+         +.....+         .|...|.+++|+|++  +++
T Consensus        98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~--l~~  165 (342)
T 1yfq_A           98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------KVKNKIFTMDTNSSR--LIV  165 (342)
T ss_dssp             CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------SSCCCEEEEEECSSE--EEE
T ss_pred             cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------eeCCceEEEEecCCc--EEE
Confidence              568899999999 99999999999999999987         5554443         488999999999887  999


Q ss_pred             EeCCCeEEEEECCC-CCee---eeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCC------eEEEEeecCCC--
Q 004270          492 AGYHGDIKVWDFKG-RDLK---SRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTD--  558 (764)
Q Consensus       492 ~~~dg~v~iwd~~~-~~~~---~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~------~~~~~~~~h~~--  558 (764)
                      ++.|+.|++||+.+ +...   ....+...+.+++|+| +++++++++.||.|++|+++..      +....+.+|..  
T Consensus       166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence            99999999999998 5432   2223457899999999 9999999999999999999887      77888888865  


Q ss_pred             -------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--CceEEEEEcCCCCeEEEEEeCC
Q 004270          559 -------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       559 -------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d~  620 (764)
                             .|++++|+|++++|++++.||.|++||+.+++++..+..+  .+|++++  |+|++|++++.|+
T Consensus       246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence                   9999999999999999999999999999999999998875  4599999  9999999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=9.4e-32  Score=283.14  Aligned_cols=331  Identities=11%  Similarity=0.124  Sum_probs=259.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .+++++.++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+  ..+.+++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~~   80 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVA   80 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccceE
Confidence            57788899999999999999999998875 58999999999987 56668999999999999999888775  3899999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEec
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      |+|+++.++++++.++.|++||+.+++.+..+.  +...+.+++|+|+++.+ ++++.|+.|++||+...    +....+
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~  154 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTV  154 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEE
Confidence            999999444666678999999999999888876  45578999999999977 78888999999988655    444444


Q ss_pred             cCCCCCCeeEEEecCCCEE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          311 SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      ..| ..+.+++|+|+++++ ++++.++.|++||+.++                                           
T Consensus       155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-------------------------------------------  190 (391)
T 1l0q_A          155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-------------------------------------------  190 (391)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-------------------------------------------
T ss_pred             ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-------------------------------------------
Confidence            444 345778888887766 45566777777775432                                           


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                                                                         .....+       
T Consensus       191 -------------------------------------------------------------------~~~~~~-------  196 (391)
T 1l0q_A          191 -------------------------------------------------------------------SVIDTV-------  196 (391)
T ss_dssp             -------------------------------------------------------------------EEEEEE-------
T ss_pred             -------------------------------------------------------------------eEEEEE-------
Confidence                                                                               111111       


Q ss_pred             cccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE-EEEeCCCeEEEEEcc
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVV  545 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~~~d~~i~v~d~~  545 (764)
                        .+...+.+++|+|+++++++++   .++.|++||+.+++.+..+..+..+.+++|+|+++++ ++++.|+.|++||+.
T Consensus       197 --~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          197 --KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             --ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             --ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence              3445678899999999888887   6899999999999999998888889999999999987 566789999999999


Q ss_pred             CCeEEEEeecCCCCee---EEEEcC------------CC----------cEEEEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270          546 ALRMVRKFEGHTDRIT---DFCFSE------------DG----------KWLLSSGMDGSLRIWDVILARQIDAIHVDVS  600 (764)
Q Consensus       546 ~~~~~~~~~~h~~~i~---~l~~s~------------dg----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  600 (764)
                      +++.+..+..|..+..   .+.+.|            +.          ..+...+.|..+++||+.+|...   ...  
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~---~~~--  349 (391)
T 1l0q_A          275 TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS---KKQ--  349 (391)
T ss_dssp             TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE---CSS--
T ss_pred             CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc---CcC--
Confidence            9999999887765432   123332            21          23555667889999999888642   111  


Q ss_pred             eEEEEEcCCCCeEEEEE
Q 004270          601 ITALSLSPNMDVLATAH  617 (764)
Q Consensus       601 v~~l~~sp~g~~lat~~  617 (764)
                      -....|+++|.|.++..
T Consensus       350 ~~~~~~~~~g~y~~~~~  366 (391)
T 1l0q_A          350 NPTHTYSETGIYTVRLT  366 (391)
T ss_dssp             SCEECCSSCEEEEEEEE
T ss_pred             CCeEEeCCCceEEEEEE
Confidence            23468999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-33  Score=287.36  Aligned_cols=252  Identities=15%  Similarity=0.234  Sum_probs=205.6

Q ss_pred             ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      +.+|.+.|.+++|  +|++|++++.|++|++||+.++...  .+..+..|...+..++|+|+...+.|++|+.|++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE--EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE--EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            6799999999997  6999999999999999999876421  25667788888889999764111789999999999999


Q ss_pred             eCCCC--eEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCceE--EEEeccCCCCEEEEEEeeCC----
Q 004270          167 NISTK--KKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEEL--VTFTHSMRGAVTALAFSSDG----  236 (764)
Q Consensus       167 d~~~~--~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~l~fs~d~----  236 (764)
                      |++++  +.+..+.+|...|.+++|+|+  +.+|++|+.||.|++||+..+...  ......|...|.+++|+|++    
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99887  467888999999999999998  789999999999999999876432  22234457889999999973    


Q ss_pred             -------------CCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeeEEEEecCC----CEEEEEcCCCcEEEEE
Q 004270          237 -------------QPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWI  296 (764)
Q Consensus       237 -------------~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~d~~i~vw~  296 (764)
                                   . +|++|+.|+.|++||++..   +....+. +|...|.+++|+|++    .+|++++.|++|++|+
T Consensus       167 ~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          167 LIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ----CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                         4 8999999999999999755   4556666 899999999999986    7899999999999999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~  344 (764)
                      ++...........+.+|...|.+++|+|++++|++++.|++|++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            876321111122335788999999999999999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=283.50  Aligned_cols=286  Identities=14%  Similarity=0.156  Sum_probs=238.5

Q ss_pred             EECCCceeeeeeecccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      |+....+.+..+. +|.+.|++++|+|+   +++|++++.||.|++|+++...  ......+.+|...|.+++|+|++++
T Consensus        24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             CCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCCCE
Confidence            3445556666666 89999999999999   5899999999999999997632  1344667789999999999999999


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      |++++.||.|++||+.+......                                                         
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~---------------------------------------------------------  123 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQI---------------------------------------------------------  123 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEE---------------------------------------------------------
T ss_pred             EEEEcCCCcEEEEEcCCCCceee---------------------------------------------------------
Confidence            99999999999999875542211                                                         


Q ss_pred             ceeecceeecCCCCCCCCeEEEEE--ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270          409 NFVLGEHILRPCPENPTAVKACTI--SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                                  ..|...+.+++|  +++++++++++.||.|++||+.++.....+.        .| ..+.++.+.+  
T Consensus       124 ------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~-~~~~~~~~~~--  180 (368)
T 3mmy_A          124 ------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--------LP-ERCYCADVIY--  180 (368)
T ss_dssp             ------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--------CS-SCEEEEEEET--
T ss_pred             ------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--------cC-CCceEEEecC--
Confidence                        024588999999  9999999999999999999999998877764        33 4566666664  


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCE----EEEEeCCCeEEEEEccCC---eEEEEeecC
Q 004270          487 TLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGL----LATVADDLVIRLFDVVAL---RMVRKFEGH  556 (764)
Q Consensus       487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~----la~~~~d~~i~v~d~~~~---~~~~~~~~h  556 (764)
                      ..+++++.++.+++|++..........   ......++++.++...    +++++.|+.|++||+...   +.+..+.+|
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence            488899999999999998765443332   2256777777776665    999999999999999987   567788888


Q ss_pred             CC------------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCC
Q 004270          557 TD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       557 ~~------------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~  620 (764)
                      ..            .|++++|+|++++|++++.||.|++||+.+++++..+..|. +|++++|+|+|++||+++.|+
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            76            79999999999999999999999999999999999988755 599999999999999999987

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2e-32  Score=278.16  Aligned_cols=252  Identities=15%  Similarity=0.187  Sum_probs=202.4

Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce--EEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEE
Q 004270          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISI  251 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~i  251 (764)
                      .+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++.  +..+.. |.+.|.+++|+++  +. +|++|+.|++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~-~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGN-ILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSS-CEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCC-EEEEEECCCEEEE
Confidence            3568999999999999999999999999999999998753  455655 4899999999863  66 8999999999999


Q ss_pred             EECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC--
Q 004270          252 WNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--  325 (764)
Q Consensus       252 wd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--  325 (764)
                      ||+++++  ....+. +|...|.+++|+|+  +.+|++++.|++|++|++.... .......+.+|...+.+++|+|+  
T Consensus        86 Wd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           86 WREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             ECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccC
Confidence            9998874  445555 89999999999998  7899999999999999987542 12234556789999999999997  


Q ss_pred             ---------------CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          326 ---------------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       326 ---------------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                                     +++|++++.|++|++||+......                                         
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------------------------------  202 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------------------------------  202 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------------------------------
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------------------------------
Confidence                           468999999999999997532110                                         


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEECcCCcc---c-cee
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----NFAVLGTAGGWIERFNLQSGIS---R-GSY  462 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~~g~i~i~~~~~~~~---~-~~~  462 (764)
                                              .......+|...|.+++|+|++    ++|++|+.||.|++|++.+...   . ..+
T Consensus       203 ------------------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          203 ------------------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             ------------------------EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred             ------------------------ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence                                    0111223567899999999987    8999999999999999986321   1 122


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                              ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       259 --------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          259 --------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             --------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             --------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                    3688999999999999999999999999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=285.79  Aligned_cols=262  Identities=15%  Similarity=0.217  Sum_probs=223.2

Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeE
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKI  205 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i  205 (764)
                      +..+..|...+..++|+|++  ++|++|+.||.|++||+.  +++.+..+.+|...|.+++|+|+  +++|++|+.||.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cEEecCCcccEEEEEEcCCC--CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            55677889999999999999  899999999999999998  66788899999999999999987  8999999999999


Q ss_pred             EEEEccCCc--eEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCcee--eeeeecccccCeeEEEEec-
Q 004270          206 HVHNVRYDE--ELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFA-  278 (764)
Q Consensus       206 ~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~l~~~~-  278 (764)
                      ++||+.+++  .+..+.. |...|.+++|+|+  +. +|++++.||.|++||+.++..  ...+. +|...|.+++|+| 
T Consensus        82 ~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCC
T ss_pred             EEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCc
Confidence            999999987  5555544 4789999999999  77 999999999999999988733  33344 7999999999999 


Q ss_pred             ------------CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEe
Q 004270          279 ------------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       279 ------------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~  343 (764)
                                  ++.++++++.|+.|++||+............+.+|...|.+++|+|+   +++|++++.||.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        68999999999999999998776555667778899999999999999   899999999999999998


Q ss_pred             ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (764)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (764)
                      ........                                                               ........+
T Consensus       239 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~  255 (379)
T 3jrp_A          239 DNEQGPWK---------------------------------------------------------------KTLLKEEKF  255 (379)
T ss_dssp             SSTTSCCE---------------------------------------------------------------EEESSSSCC
T ss_pred             CCCCccce---------------------------------------------------------------eeeeccccC
Confidence            76532111                                                               011111235


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                      ...+.+++|+|+|+++++++.||.|++|++..+...
T Consensus       256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            688999999999999999999999999999865443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.8e-31  Score=280.26  Aligned_cols=298  Identities=13%  Similarity=0.097  Sum_probs=245.7

Q ss_pred             cEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE-----eccCCCCCCeeE
Q 004270          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-----FRSGHSAPPLCI  320 (764)
Q Consensus       248 ~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i  320 (764)
                      .|..||..++  +.+..+.  ....+.+++|+|++.++++++.++.|++||+....    ...     ...+|...+.++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~v~~~  175 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ----TVRLSPPEKYKKKLGFVETI  175 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC----EEEECCCHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe----EeeecCcccccccCCceeEE
Confidence            4444555445  4555554  34556799999977788888889999999987652    333     445889999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (764)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (764)
                      +|+++++.+++++.|+.+++||+.+++....+.                                               
T Consensus       176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-----------------------------------------------  208 (433)
T 3bws_A          176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-----------------------------------------------  208 (433)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------------
T ss_pred             EEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-----------------------------------------------
Confidence            999999999999999999999986554332211                                               


Q ss_pred             eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (764)
                                           .+...+.+++++|+++++++++ .++.|++||+.++.....+.         +...+.+
T Consensus       209 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~  258 (433)
T 3bws_A          209 ---------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------KIGLPRG  258 (433)
T ss_dssp             ---------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---------CCSEEEE
T ss_pred             ---------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---------CCCCceE
Confidence                                 2346789999999999886554 78999999999888766653         3456999


Q ss_pred             EEECCCCCEEEEEe--------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE-EEEeCCCeEEEEEccCCeEE
Q 004270          480 VACDSTNTLMISAG--------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMV  550 (764)
Q Consensus       480 l~~~~~~~~l~s~~--------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~~~d~~i~v~d~~~~~~~  550 (764)
                      ++|+|+++++++++        .||.|++||+.+++.+..+.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+
T Consensus       259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence            99999999999888        4889999999999988888777889999999999755 56688999999999999998


Q ss_pred             EEeecCCCCeeEEEEcCCCcEEEEEeC---------------CCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEE
Q 004270          551 RKFEGHTDRITDFCFSEDGKWLLSSGM---------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLAT  615 (764)
Q Consensus       551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat  615 (764)
                      ..+. +...+.+++|+|+|++|++++.               ||.|++||+.+++.+..+..+..+.+++|+|+|++|++
T Consensus       339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEE
T ss_pred             EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEE
Confidence            8886 6778999999999999988876               57999999999999999998888999999999999999


Q ss_pred             EEe-CCCeEEEEeccc
Q 004270          616 AHV-DQNGVYLWVNRC  630 (764)
Q Consensus       616 ~~~-d~~~i~lW~~~~  630 (764)
                      ++. |+ .|++|+++.
T Consensus       418 ~~~~d~-~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDH-QIRVYRRDG  432 (433)
T ss_dssp             EETTTT-EEEEEEETT
T ss_pred             EECCCC-eEEEEEecC
Confidence            886 66 799999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-31  Score=277.65  Aligned_cols=299  Identities=15%  Similarity=0.147  Sum_probs=226.0

Q ss_pred             eEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeE
Q 004270          132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKI  205 (764)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i  205 (764)
                      .+..|...+..+.|+|++  ++|++|+.||.|++||+.++    +.+..+.+|...|.+++|+|  ++++|++|+.||.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYG--RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSS--SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCC--CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            345678888999999999  89999999999999999876    57788899999999999999  69999999999999


Q ss_pred             EEEEccCC---------ceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCceeeeeee----------
Q 004270          206 HVHNVRYD---------EELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRRLQSVIR----------  264 (764)
Q Consensus       206 ~iwd~~~~---------~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------  264 (764)
                      ++||+.++         +.+..+.. |.+.|.+++|+|+  +. +|++++.||.|++||+++++.+..+.          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            99999987         44555554 4889999999999  88 99999999999999999886554433          


Q ss_pred             --cccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC----CEEEEEeCC
Q 004270          265 --EAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG----RHILSAGQD  335 (764)
Q Consensus       265 --~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~----~~l~s~~~d  335 (764)
                        ..|...+.+++|+|+   +..+++++.|+.+.+|+....  ....+..+.+|...|.+++|+|++    ++|++++.|
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence              257889999999997   889999999999977765433  334577788999999999999998    899999999


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                      |.|++||+.............                                                           
T Consensus       240 g~i~iwd~~~~~~~~~~~~~~-----------------------------------------------------------  260 (351)
T 3f3f_A          240 GRIRIFKITEKLSPLASEESL-----------------------------------------------------------  260 (351)
T ss_dssp             SCEEEEEEEECC--------------------------------------------------------------------
T ss_pred             CeEEEEeCCCCcCccccCCcc-----------------------------------------------------------
Confidence            999999998654322211100                                                           


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEE----EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          416 ILRPCPENPTAVKACTISACGNFAV----LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~----~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                               ........++....+.    .+.....+.+|+.........+.        +|...|++++|+|++++|++
T Consensus       261 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          261 ---------TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--------DHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             ---------------------------------------CCSEEEEEEEEEC--------TTSSCEEEEEECSSSCCEEE
T ss_pred             ---------cceeccCCCcccccccccccccccceeeeecccccccEEEEEe--------cccccEEEEEEcCCCCEEEE
Confidence                     1111111122222222    22333455566655555555553        89999999999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeeE
Q 004270          492 AGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~  512 (764)
                      ++.||.|++|++.+++....+
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEEE
T ss_pred             ecCCCcEEEEecCcCcchhhe
Confidence            999999999999988765544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.6e-31  Score=282.04  Aligned_cols=299  Identities=10%  Similarity=0.090  Sum_probs=245.3

Q ss_pred             eEEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee----cccccCeeEEEEe
Q 004270          204 KIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFF  277 (764)
Q Consensus       204 ~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~h~~~v~~l~~~  277 (764)
                      .|..+|..++  +.+..+..+  ..+.+++|+|++. ++++++.++.|++||+.+++......    .+|.+.|.+++|+
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~  178 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG--FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP  178 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS--SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred             EEEEECCCCCcceEEEEEcCC--CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence            4444454445  455555443  4567999999666 88888889999999999998776332    2688899999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchh
Q 004270          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRH  356 (764)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~  356 (764)
                      +++.++++++.|+.|++|+++..    ..+..+..|...+.+++|+|+++.+++++ .|+.|++||+.+++....+.   
T Consensus       179 ~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---  251 (433)
T 3bws_A          179 EHNELWVSQMQANAVHVFDLKTL----AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---  251 (433)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---
T ss_pred             CCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---
Confidence            99999999999999999998765    45566668899999999999999886555 79999999987554322211   


Q ss_pred             hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (764)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  436 (764)
                                                                                        ....+.+++++|+|
T Consensus       252 ------------------------------------------------------------------~~~~~~~~~~~~~g  265 (433)
T 3bws_A          252 ------------------------------------------------------------------KIGLPRGLLLSKDG  265 (433)
T ss_dssp             ------------------------------------------------------------------CCSEEEEEEECTTS
T ss_pred             ------------------------------------------------------------------CCCCceEEEEcCCC
Confidence                                                                              12458899999999


Q ss_pred             CEEEEEe--------cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCC
Q 004270          437 NFAVLGT--------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       437 ~~l~~g~--------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~  507 (764)
                      +++++++        .+|.|++||+.+++....+         .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus       266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCccccCCCeEEEEECCCCcEEeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            9999988        4889999999988766554         566789999999999755 666899999999999999


Q ss_pred             eeeeEecCcceEEEEEeecCCEEEEEeC---------------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEE
Q 004270          508 LKSRWEVGCSLVKIVYHRVNGLLATVAD---------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (764)
Q Consensus       508 ~~~~~~~~~~i~~~~~s~~~~~la~~~~---------------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l  572 (764)
                      ....+.....+.+++|+|+++++++++.               ||.|++||+.+++.+..+.++ ..+.+++|+|||++|
T Consensus       337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  415 (433)
T 3bws_A          337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYL  415 (433)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEE
T ss_pred             EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEE
Confidence            9999988899999999999999988876               579999999999999988864 579999999999999


Q ss_pred             EEEeC-CCcEEEEEcCc
Q 004270          573 LSSGM-DGSLRIWDVIL  588 (764)
Q Consensus       573 ~s~s~-dg~i~iwd~~~  588 (764)
                      ++++. |+.|++|++..
T Consensus       416 ~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          416 VISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEETTTTEEEEEEETT
T ss_pred             EEEECCCCeEEEEEecC
Confidence            98875 99999999863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-32  Score=290.12  Aligned_cols=288  Identities=13%  Similarity=0.166  Sum_probs=234.6

Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCce----eeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCC
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      ...++++|+...++++++.+|.|++|++....    ....+. +|.+.|.+++|+| ++.+|++++.||.|++|++....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            44688888876455668899999999996642    233454 8999999999999 89999999999999999987653


Q ss_pred             CCc---eeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          302 GDP---RLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       302 ~~~---~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      ...   ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++....+.                        
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------  171 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------------  171 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------------
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------------
Confidence            211   3456677999999999999998 699999999999999987654332221                        


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                                                ...|...+.+++|+|+|+++++++.||.|++||+.++.
T Consensus       172 ------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          172 ------------------------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             ------------------------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             ------------------------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence                                                      02456889999999999999999999999999999988


Q ss_pred             ccceecCccccccccccCc-EEEEEECCCCCEEEEE---eCCCeEEEEECCCCCe-eee--EecCcceEEEEEeecCCEE
Q 004270          458 SRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISA---GYHGDIKVWDFKGRDL-KSR--WEVGCSLVKIVYHRVNGLL  530 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~---~~dg~v~iwd~~~~~~-~~~--~~~~~~i~~~~~s~~~~~l  530 (764)
                      ....+.       ..|.+. +.+++|+|++++++++   +.|+.|++||+.+++. +..  +.+...+.+++|+|++++|
T Consensus       210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          210 VVAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             EEEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred             eeeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence            877762       267665 8999999999999999   7999999999998764 333  3455889999999999999


Q ss_pred             EE-EeCCCeEEEEEccCCeE-EEEeec--CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          531 AT-VADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       531 a~-~~~d~~i~v~d~~~~~~-~~~~~~--h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                      ++ ++.|+.|++||+.+++. +..+..  |...|.+++|+|++.++++  .++.+++|++.+++
T Consensus       283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            75 55799999999998874 444444  5589999999999998874  56799999998754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.2e-32  Score=287.51  Aligned_cols=284  Identities=14%  Similarity=0.225  Sum_probs=231.5

Q ss_pred             EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCC---
Q 004270          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKK----KLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYD---  213 (764)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~---  213 (764)
                      .++++|+.. ..+++++.+|.|++|++....    .+..+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++   
T Consensus        39 ~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           39 FCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             SEEECSSEE-EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             cEEECCCeE-EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence            466777662 234457889999999986542    3456789999999999999 9999999999999999999988   


Q ss_pred             ----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcC
Q 004270          214 ----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       214 ----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                          +.+..+..+ ...|.+++|+|++..+|++++.||.|++||+++++.+..+. .+|...|.+++|+|++++|++++.
T Consensus       118 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          118 LPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             cccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                566777655 88999999999985599999999999999999999988883 389999999999999999999999


Q ss_pred             CCcEEEEEecCCCCCceeeEec-cCCCCC-CeeEEEecCCCEEEEE---eCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFR-SGHSAP-PLCIRFYANGRHILSA---GQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~-~~h~~~-v~~i~~~~~~~~l~s~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      |+.|++||++..    ..+..+ .+|... +.++.|+|++++++++   +.|+.|++||+.+......            
T Consensus       197 d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~------------  260 (402)
T 2aq5_A          197 DKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS------------  260 (402)
T ss_dssp             TSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE------------
T ss_pred             CCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce------------
Confidence            999999998765    455555 678776 8999999999999988   6889999998754321000            


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                                                      
T Consensus       261 --------------------------------------------------------------------------------  260 (402)
T 2aq5_A          261 --------------------------------------------------------------------------------  260 (402)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCe-e---eeEecCcce
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDL-K---SRWEVGCSL  518 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~-~---~~~~~~~~i  518 (764)
                                       ...       ..|...+.+++|+|++++++++ +.||.|++||+.+++. +   ..+.+..++
T Consensus       261 -----------------~~~-------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v  316 (402)
T 2aq5_A          261 -----------------LQE-------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ  316 (402)
T ss_dssp             -----------------EEE-------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred             -----------------EEe-------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence                             000       1466778999999999988754 4799999999998873 3   333345899


Q ss_pred             EEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          519 VKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       519 ~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      .+++|+|++.++++  .++.+++|++.++++
T Consensus       317 ~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          317 RGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             cceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99999999998875  567999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-31  Score=283.26  Aligned_cols=286  Identities=12%  Similarity=0.153  Sum_probs=228.6

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc---eEEEEecc------------------------------------
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHS------------------------------------  222 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~------------------------------------  222 (764)
                      .++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..+                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999966655 57899999999998   66655532                                    


Q ss_pred             -----------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC--Cceeeeeeec-ccccCeeEEEEecCCCE
Q 004270          223 -----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIRE-AHDNAIISLHFFANEPV  282 (764)
Q Consensus       223 -----------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~-~h~~~v~~l~~~~~~~~  282 (764)
                                       +.+.|.+++|+|+++.++++|+.||.|++||+.  +++.+..+.. .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                             123699999999999335899999999999999  8877777752 46789999999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEeecccccccccchhhhH
Q 004270          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK  359 (764)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  359 (764)
                      |++++.|+.+++|++............+.+|...|.+++|+|+   +++|++++.|+.|++||+.++.....        
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------  235 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK--------  235 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--------
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--------
Confidence            9999999999999987654322133456789999999999999   99999999999999999754321110        


Q ss_pred             HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE
Q 004270          360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  439 (764)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  439 (764)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (450)
T 2vdu_B          236 --------------------------------------------------------------------------------  235 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-----
Q 004270          440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----  514 (764)
Q Consensus       440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----  514 (764)
                                            +.       .+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..     
T Consensus       236 ----------------------~~-------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~  285 (450)
T 2vdu_B          236 ----------------------WL-------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK  285 (450)
T ss_dssp             ----------------------EC-------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred             ----------------------ee-------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence                                  00       2678888888888 888888888888888888888887777652     


Q ss_pred             ---------------------CcceEEEEEeecCCEEEEEe-CCCeEEEEEc--cCC---eEEEEeecCCCCeeEEEEcC
Q 004270          515 ---------------------GCSLVKIVYHRVNGLLATVA-DDLVIRLFDV--VAL---RMVRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       515 ---------------------~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~--~~~---~~~~~~~~h~~~i~~l~~s~  567 (764)
                                           ...+.+++++|+++++++++ .++.|++|++  .++   +.+..+.+| +.|.+++|+|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence                                 24688999999999999999 8999999999  666   778888888 8899999999


Q ss_pred             CCcEEEEEeC------CCcEEEEEcC
Q 004270          568 DGKWLLSSGM------DGSLRIWDVI  587 (764)
Q Consensus       568 dg~~l~s~s~------dg~i~iwd~~  587 (764)
                      ++.++++++.      +..|.+|.+.
T Consensus       365 ~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          365 DEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CcEEEEEecccCCCCCCcceEEEEEE
Confidence            6544443333      4457888754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.3e-31  Score=272.19  Aligned_cols=306  Identities=10%  Similarity=0.117  Sum_probs=216.9

Q ss_pred             EEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270          165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA  244 (764)
Q Consensus       165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~  244 (764)
                      +|++.+.+.+..++.|...|.+++|+|+|++||+|+.+| +++||+.+++.......+   .+..+++.++++.++++|+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEEC
Confidence            567778888888899999999999999999999998775 789999887766654432   4778888888884446788


Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      .|+.|++||+.+++.+..+.  |...|.++.|+++.  ++++ .|+.|++|++.....   .+..+..   +...+++++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~---~~~~~~~---~~~~~~~s~  147 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK---RITDDIR---FGGVCEFSN  147 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC---BSSCCEE---EEEEEEEET
T ss_pred             CccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce---eeEEecc---CCceEEEEc
Confidence            88999999999999988886  77799999998774  4443 378999999876521   2222222   334556666


Q ss_pred             CCCEEEE--EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          325 NGRHILS--AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       325 ~~~~l~s--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                        .+++.  ++.||.|++||+.++........                                                
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~------------------------------------------------  177 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQ------------------------------------------------  177 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC---------------------------------------------------------
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccc------------------------------------------------
Confidence              56665  57899999999875432111000                                                


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEE
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                             ..       .                 ...... ...+        .+|...|++++
T Consensus       178 -----------------------~~-------~-----------------~~~~~p~~~~~--------~~h~~~v~~~~  202 (355)
T 3vu4_A          178 -----------------------GV-------Q-----------------QKAILGKGVLI--------KAHTNPIKMVR  202 (355)
T ss_dssp             --------------------------------------------------------CCEEE--------CCCSSCEEEEE
T ss_pred             -----------------------cc-------c-----------------ccccCcccEEE--------EccCCceEEEE
Confidence                                   00       0                 000001 1122        38999999999


Q ss_pred             ECCCCCEEEEEeCCCe-EEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEee-
Q 004270          482 CDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFE-  554 (764)
Q Consensus       482 ~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~~-  554 (764)
                      |+|++++|++++.||+ |++||+.+++.+..+.   +...|.+++|+|++++|++++.|++|++||+..+..  ...+. 
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence            9999999999999998 9999999999999998   568999999999999999999999999999976531  11111 


Q ss_pred             --------------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          555 --------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       555 --------------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                                          .+......++|++||++|++++.||.+++|++..+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                                112334779999999999999999999999987644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7e-30  Score=268.79  Aligned_cols=277  Identities=10%  Similarity=0.094  Sum_probs=232.2

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270          238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (764)
Q Consensus       238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (764)
                      .++++++.|+.|++||+.+++.+..+. .| ..+.+++|+|+++.+ ++++.|+.|++||+...    +.+..+..+. .
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~~-~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-S   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-S
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC----eEEEEEECCC-C
Confidence            378889999999999999999988887 44 458999999999976 67778999999998665    4555554444 8


Q ss_pred             CeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270          317 PLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (764)
Q Consensus       317 v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (764)
                      +.+++|+|++++++.++ .++.|++||+.+++....+.                                          
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------------------------  113 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------------------------  113 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------------------------------------------
Confidence            99999999999886554 67999999987654322211                                          


Q ss_pred             eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                                                 +...+.+++|+|+|+++ ++++.++.|++||+.+++....+.         +.
T Consensus       114 ---------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~  157 (391)
T 1l0q_A          114 ---------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VG  157 (391)
T ss_dssp             ---------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CC
T ss_pred             ---------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cC
Confidence                                       12567899999999987 677789999999999988777663         33


Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe---CCCeEEEEEccCCeEE
Q 004270          475 GEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMV  550 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~---~d~~i~v~d~~~~~~~  550 (764)
                      ..+.+++|+|+++.+ ++++.++.|++||+.+++....+.....+.+++|+|+++++++++   .++.|++||+.+++.+
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            567999999999887 577789999999999999999988888999999999999999888   6899999999999999


Q ss_pred             EEeecCCCCeeEEEEcCCCcEE-EEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270          551 RKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS  600 (764)
Q Consensus       551 ~~~~~h~~~i~~l~~s~dg~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~  600 (764)
                      ..+..|. .+.+++|+|||++| ++++.|+.|++||+.+++.+..+..+..
T Consensus       238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            9998775 47899999999987 5778899999999999999998876544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.3e-30  Score=250.04  Aligned_cols=289  Identities=13%  Similarity=0.171  Sum_probs=211.4

Q ss_pred             CeEEEEEcCCCC----CeEEEEEcCCCC---EEEEEEcCCeEEEEEccCC---ceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270          171 KKKLYEFKGWGS----SISSCVSSPALD---VVAVGCSDGKIHVHNVRYD---EELVTFTHSMRGAVTALAFSSDGQPLL  240 (764)
Q Consensus       171 ~~~~~~~~~h~~----~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~fs~d~~~~l  240 (764)
                      .+++..++...+    .+.++.|-..+-   .++++++ ..|++|+..++   +.++++..+ ..+|..+.|.||..+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFA-EVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECC-SSCEEEECCCTTCCSCE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEecc-CceeEEEEEcCccccee
Confidence            345556654433    234455544443   5666665 78999999998   788888776 78999999999987666


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (764)
                      .++-.+                   -+...|.+++|+|+    ++.+++++.+  +++|++.                  
T Consensus       103 ~~~~~~-------------------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~------------------  143 (356)
T 2w18_A          103 CVALGN-------------------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT------------------  143 (356)
T ss_dssp             EEEECS-------------------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET------------------
T ss_pred             eeeecc-------------------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC------------------
Confidence            554311                   35668999999999    8899998844  7788542                  


Q ss_pred             CeeEEEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          317 PLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       317 v~~i~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                              +++.+.+++  .|+.|++|++.                                                  
T Consensus       144 --------~g~lv~ss~~g~d~~V~~~~~s--------------------------------------------------  165 (356)
T 2w18_A          144 --------KRRLVSSSGTLSDQQVEVMTFA--------------------------------------------------  165 (356)
T ss_dssp             --------TTEEEEEESSSTTCEEEEEEEC--------------------------------------------------
T ss_pred             --------CCcEEEecccCCCCcEEEEEEC--------------------------------------------------
Confidence                    333344422  46666666642                                                  


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                                                             |+|+.+..                    +        ..|.
T Consensus       166 ---------------------------------------~dG~~~~s--------------------~--------~~~~  178 (356)
T 2w18_A          166 ---------------------------------------EDGGGKEN--------------------Q--------FLMP  178 (356)
T ss_dssp             ---------------------------------------TTSCEEEE--------------------E--------EECC
T ss_pred             ---------------------------------------CCCceeee--------------------e--------ccCC
Confidence                                                   22332221                    1        2677


Q ss_pred             CcEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEE------------EEEeC
Q 004270          475 GEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLL------------ATVAD  535 (764)
Q Consensus       475 ~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~l------------a~~~~  535 (764)
                      ..++.++|++   ++.+|++++.|++|++||++++++++++..+    ..+.+++|+|+|.++            ++|+.
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            7788888888   7799999999999999999999999999743    467788999999876            56788


Q ss_pred             CCeEEEEEccCCeEEEEe-----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEEEEEcC
Q 004270          536 DLVIRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSP  608 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~-----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp  608 (764)
                      |++|++||..+++.+..+     .+|...+.+..++  +.++++++.|++|+|||+.+|+++.++.+|..  +.+++|||
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence            999999999999988776     4777766555554  88999999999999999999999999987653  45699999


Q ss_pred             CCCeEEEEEeCCCeEEEEec
Q 004270          609 NMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       609 ~g~~lat~~~d~~~i~lW~~  628 (764)
                      ||++||+++.|+ +|+||+.
T Consensus       337 DG~~LaSGS~D~-TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQKDG-NIFVYHY  355 (356)
T ss_dssp             SSSEEEEECTTS-CEEEEEE
T ss_pred             CCCEEEEEECCC-cEEEecC
Confidence            999999999999 6999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-30  Score=277.61  Aligned_cols=285  Identities=11%  Similarity=0.065  Sum_probs=228.7

Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec-------------------------------------
Q 004270          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------------------------------------  310 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-------------------------------------  310 (764)
                      ..++.+++|+++|++|+++ .++.|++|++..+... ..+...                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW-EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE-EEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc-eeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            4578999999999966665 5789999998766400 011111                                     


Q ss_pred             -----------------cCCCCCCeeEEEecCCCEE-EEEeCCCcEEEEEee--cccccccccchhhhHHHhhccchhhh
Q 004270          311 -----------------SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEE  370 (764)
Q Consensus       311 -----------------~~h~~~v~~i~~~~~~~~l-~s~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (764)
                                       .+|...|.+++|+|++++| ++++.||.|++|++.  ++.....+..                
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------  145 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR----------------  145 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------------
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec----------------
Confidence                             2455579999999999996 889899999999987  4433322210                


Q ss_pred             hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  450 (764)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i  450 (764)
                                                                        ..+...+.+++|+|+|+++++|+.+|.+++
T Consensus       146 --------------------------------------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          146 --------------------------------------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             --------------------------------------------------EECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             --------------------------------------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence                                                              023378999999999999999999999999


Q ss_pred             EECcCCcccc----eecCccccccccccCcEEEEEECCC---CCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEE
Q 004270          451 FNLQSGISRG----SYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKI  521 (764)
Q Consensus       451 ~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~  521 (764)
                      |++.++....    .+        .+|...|.+++|+|+   +++|++++.|+.|++||+.+++.+..+.  +...|.++
T Consensus       176 ~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPI--------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             EETTSCCCSSCCCCCS--------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred             EecCCcccccccceee--------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence            9998877654    33        389999999999999   9999999999999999999998877643  45899999


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-------------------------CCCeeEEEEcCCCcEEEEEe
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-------------------------TDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-------------------------~~~i~~l~~s~dg~~l~s~s  576 (764)
                      +|+ ++++|++++.|+.|++||+.+++++..+..+                         ...|.+++|+|++++|++++
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            999 9999999999999999999999998888632                         35689999999999999998


Q ss_pred             -CCCcEEEEEc--Ccc---ceEEEEeeCCceEEEEEcCCCCeEEEEEeC-----CCeEEEEecc
Q 004270          577 -MDGSLRIWDV--ILA---RQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR  629 (764)
Q Consensus       577 -~dg~i~iwd~--~~~---~~~~~~~~~~~v~~l~~sp~g~~lat~~~d-----~~~i~lW~~~  629 (764)
                       .|+.|++|++  .++   +.+..+..+..|.+++|+|++.++++++.+     ...|.+|.++
T Consensus       327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence             8999999999  666   677888888889999999965444443332     2248888865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=3.3e-30  Score=274.10  Aligned_cols=256  Identities=13%  Similarity=0.238  Sum_probs=213.2

Q ss_pred             cccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCC------CCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCC
Q 004270          265 EAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDR  336 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~------~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg  336 (764)
                      ..|.+.|++++|+|+ +.+|++++.||.|++|++...      .+....+..+.+|...+.+++|+|++. +|++++.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            379999999999997 679999999999999999762      112355667779999999999999888 999999999


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .|++|++..........                                                             ..
T Consensus       205 ~i~vwd~~~~~~~~~~~-------------------------------------------------------------~~  223 (430)
T 2xyi_A          205 TICLWDINATPKEHRVI-------------------------------------------------------------DA  223 (430)
T ss_dssp             CEEEEETTSCCBGGGEE-------------------------------------------------------------EC
T ss_pred             eEEEEeCCCCCCCCcee-------------------------------------------------------------cc
Confidence            99999987642211100                                                             00


Q ss_pred             ecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCc---ccceecCccccccccccCcEEEEEECCCCC-EEEE
Q 004270          417 LRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGI---SRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMIS  491 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s  491 (764)
                      ......|...+.+++|+| ++.++++++.+|.|++||+.++.   ....+        ..|...|++++|+|+++ ++++
T Consensus       224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------DAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--------ECCSSCEEEEEECSSCTTEEEE
T ss_pred             ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--------ecCCCCeEEEEeCCCCCCEEEE
Confidence            011124668899999999 77899999999999999999873   33343        38999999999999987 6889


Q ss_pred             EeCCCeEEEEECCC-CCeeeeEec-CcceEEEEEeecCC-EEEEEeCCCeEEEEEccC--------------CeEEEEee
Q 004270          492 AGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------------LRMVRKFE  554 (764)
Q Consensus       492 ~~~dg~v~iwd~~~-~~~~~~~~~-~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~--------------~~~~~~~~  554 (764)
                      ++.||.|++||+++ .+.+..+.. ...|.+++|+|+++ +|++++.|+.|++||+..              .+++..+.
T Consensus       296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (430)
T 2xyi_A          296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  375 (430)
T ss_dssp             EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred             EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence            99999999999997 566777764 48999999999985 799999999999999987              46788889


Q ss_pred             cCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCcc
Q 004270          555 GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~  589 (764)
                      +|...|++++|+|+++ +|++++.||.|+||++..+
T Consensus       376 ~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999999999 8999999999999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=7e-30  Score=249.15  Aligned_cols=266  Identities=9%  Similarity=0.063  Sum_probs=211.1

Q ss_pred             CeEEEEEEeCCeEEEEecCCC---eEEEecCCCCcceEEEEEeCC---eEEEEECCeEEEEecCceEEEecccccceEEE
Q 004270           26 TENFVTVSVGKAFHIYNCAKL---NLVLVGPQLPKKIRALASYRD---YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLL   99 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~I~~~~~~~~---~~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l   99 (764)
                      .+.-+++....++++|+..++   +++++...|+.+|..+++.||   .+.+|-|+-               |...|.++
T Consensus        53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~v~sl  117 (356)
T 2w18_A           53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNL---------------EIREIRAL  117 (356)
T ss_dssp             CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSS---------------SEEEEEEE
T ss_pred             CccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccc---------------cccceEEE
Confidence            455666666899999999999   999999999999999999997   555554432               44566777


Q ss_pred             EE--e----CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe--CCCcEEEEeC-CC
Q 004270          100 LL--F----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS--QEGSLQLWNI-ST  170 (764)
Q Consensus       100 ~~--~----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~--~dg~i~iwd~-~~  170 (764)
                      ++  +    ++++++++.+  +++|++.+++                            .+.+++  .|+.|++|++ .+
T Consensus       118 a~spd~~~~~~~l~s~g~~--~~v~~l~~g~----------------------------lv~ss~~g~d~~V~~~~~s~d  167 (356)
T 2w18_A          118 FCSSDDESEKQVLLKSGNI--KAVLGLTKRR----------------------------LVSSSGTLSDQQVEVMTFAED  167 (356)
T ss_dssp             CC------CCEEEEEEEEE--EEEEEETTTE----------------------------EEEEESSSTTCEEEEEEECTT
T ss_pred             EECCCccccccEEEeCCCe--EEEEecCCCc----------------------------EEEecccCCCCcEEEEEECCC
Confidence            64  6    7789987744  7788653322                            233322  5899999999 55


Q ss_pred             CeEEEEEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCCceEEEEeccC--CCCEEEEEEeeCCCCEE-----
Q 004270          171 KKKLYEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLL-----  240 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~l-----  240 (764)
                      |+.+..+.+|...++.++|+|   ++.+||+|+.|++|+|||+++|+.+.++..++  ...+.+++|+|+|. ++     
T Consensus       168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~  246 (356)
T 2w18_A          168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSH  246 (356)
T ss_dssp             SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC-
T ss_pred             CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEecc
Confidence            899999999999999999999   77999999999999999999999999997553  34788889999998 54     


Q ss_pred             -------EEEeCCCcEEEEECCCceeeeee----ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          241 -------ASGASSGVISIWNLEKRRLQSVI----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       241 -------~sg~~dg~i~iwd~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                             ++|+.|++|++||..+++.+..+    ..+|...+.+..++  +.++++++.|++|++||+.++    +++..
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG----k~l~t  320 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG----QCTAL  320 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC----SEEEE
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC----cEEEE
Confidence                   67889999999999999887765    24676665544444  789999999999999999876    67888


Q ss_pred             ccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          310 RSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       310 ~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      +.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus       321 L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            889988766 5899999999999999999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2.2e-30  Score=267.50  Aligned_cols=292  Identities=10%  Similarity=0.178  Sum_probs=211.1

Q ss_pred             EEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe--EEEEecCceEEEecccccceEEEE--EeCCEE-EEEecCCc
Q 004270           40 IYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH--IAVVKRAHQVATWSRHSAKVNLLL--LFGEHI-LSIDIDGN  114 (764)
Q Consensus        40 iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~--i~vw~~~~~~~~~~~h~~~v~~l~--~~g~~l-~s~~~dg~  114 (764)
                      ||+..+...+.....|...|++++|+||+.++|+|..  +++|+..........+...+..+.  ++++.+ ++++.|++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccE
Confidence            5666777777667789999999999999998888655  999997554333222222344444  467777 56777899


Q ss_pred             EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcCCC
Q 004270          115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSPAL  193 (764)
Q Consensus       115 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp~~  193 (764)
                      |++||..+++.    +..+.. ...+..+.++++.    ++++ .++.|++||+.++ +.+..+..   +...+++++  
T Consensus        83 v~iWd~~~~~~----~~~~~~-~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--  147 (355)
T 3vu4_A           83 VHIWDDVKKQD----VSRIKV-DAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--  147 (355)
T ss_dssp             EEEEETTTTEE----EEEEEC-SSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--
T ss_pred             EEEEECCCCcE----EEEEEC-CCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--
Confidence            99999999887    566664 3456667777654    5555 4788999999988 76666554   455667777  


Q ss_pred             CEEEE--EEcCCeEEEEEccCCc----------------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc-EEEEEC
Q 004270          194 DVVAV--GCSDGKIHVHNVRYDE----------------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNL  254 (764)
Q Consensus       194 ~~la~--g~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~-i~iwd~  254 (764)
                      .++++  |+.+|.|++||+.+++                .+..+.. |.+.|++++|+|+|+ +|++|+.||+ |++||+
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSS-EEEEEETTCSEEEEEET
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCC-EEEEEeCCCCEEEEEEC
Confidence            66776  5789999999999865                1555554 489999999999999 9999999998 999999


Q ss_pred             CCceeeeeeecc-cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee-------------------EeccCCC
Q 004270          255 EKRRLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL-------------------RFRSGHS  314 (764)
Q Consensus       255 ~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-------------------~~~~~h~  314 (764)
                      ++++.+..+..+ |...|.+++|+|++++|++++.|++|++|++..........                   .....+.
T Consensus       226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence            999999998744 99999999999999999999999999999987653211100                   0111223


Q ss_pred             CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      .+...++|+++++.+++++.||.+++|++..+..
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            3457799999999999999999999999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.7e-31  Score=302.30  Aligned_cols=262  Identities=15%  Similarity=0.175  Sum_probs=213.2

Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcE
Q 004270          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVI  249 (764)
Q Consensus       174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i  249 (764)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+..| .++|++++|+++  +. +|++|+.||.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~-~l~s~s~Dg~I   79 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGT-ILASCSYDGKV   79 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCS-EEEEEETTSCE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCC-EEEEEeCCCeE
Confidence            35678999999999999999999999999999999998  44566666554 889999999988  77 99999999999


Q ss_pred             EEEECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270          250 SIWNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-  324 (764)
Q Consensus       250 ~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-  324 (764)
                      ++||+.+++  ....+. +|...|.+++|+|+  +..+++++.||.|++||+.....  .......+|...|.+++|+| 
T Consensus        80 ~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEECCC
T ss_pred             EEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEecCc
Confidence            999999886  555565 89999999999999  99999999999999999876633  23344568999999999999 


Q ss_pred             ------------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          325 ------------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       325 ------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                                  ++..+++++.||.|++||+..+......                                        
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~----------------------------------------  196 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL----------------------------------------  196 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE----------------------------------------
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee----------------------------------------
Confidence                        5899999999999999999765322111                                        


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                              ......|...|.+++|+|+   ++++++|+.||.|++||+.++.......   ...
T Consensus       197 ------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~  249 (753)
T 3jro_A          197 ------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLK  249 (753)
T ss_dssp             ------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---BSS
T ss_pred             ------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---Eec
Confidence                                    1111256689999999999   9999999999999999998874321111   001


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      ...|...|++++|+|+++++++++.||.|++|++..+.
T Consensus       250 ~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            13688999999999999999999999999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-30  Score=266.35  Aligned_cols=232  Identities=13%  Similarity=0.127  Sum_probs=187.3

Q ss_pred             EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC---------CC
Q 004270          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS---------TK  171 (764)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~---------~~  171 (764)
                      .+++.|++|+.||+|++||+.+++.    +..+.  ...+..+.++|.     +++++.|++|++|+..         ++
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~----~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKT----ITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSC----EEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcE----EEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCc
Confidence            4788999999999999999999887    44444  233444556665     8999999999999654         56


Q ss_pred             eEEEEEc-CCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          172 KKLYEFK-GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       172 ~~~~~~~-~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      +.+..+. +|.+.|.+++|+|  +++++++|+.||.|++||+++++.+.....++...+.+++|+|+|. +|++|+.||.
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~  193 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGI  193 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSC
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCE
Confidence            6566654 7778999999999  9999999999999999999999987777666677899999999999 9999999999


Q ss_pred             EEEEECCCceee-eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe--eEEEecC
Q 004270          249 ISIWNLEKRRLQ-SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL--CIRFYAN  325 (764)
Q Consensus       249 i~iwd~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~--~i~~~~~  325 (764)
                      |++||+++++.. ..+..+|.+.|.+++|+|++.+|++++ |+.|++||++..... ..+..+..|...+.  +++|+|+
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccceEEEECCC
Confidence            999999999887 677633999999999999999999999 559999999876432 11222223444444  6999999


Q ss_pred             CCEEEEEeC-CCcEEEEEeecc
Q 004270          326 GRHILSAGQ-DRAFRLFSVIQD  346 (764)
Q Consensus       326 ~~~l~s~~~-dg~i~i~d~~~~  346 (764)
                      +++|++++. |+.+++|++...
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEecCCCCcEEEEEEccc
Confidence            999999998 999999998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=4e-29  Score=271.21  Aligned_cols=332  Identities=11%  Similarity=0.069  Sum_probs=260.1

Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc--cCCceEEEEec
Q 004270          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV--RYDEELVTFTH  221 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~--~~~~~~~~~~~  221 (764)
                      +++|++  ..+++++.+++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+  .+++.+.++..
T Consensus       144 ~~~p~~--~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          144 DLDLPN--LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCCGGG--EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCC--EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence            378887  6788889999999999999999999984333 889999999999999999999999999  88998888875


Q ss_pred             cCCCCEEEEEEee----CCCCEEEEEe-CCCcEEEEECCCceeeeeeecc---------ccc-CeeEEEEecCCC-EEEE
Q 004270          222 SMRGAVTALAFSS----DGQPLLASGA-SSGVISIWNLEKRRLQSVIREA---------HDN-AIISLHFFANEP-VLMS  285 (764)
Q Consensus       222 ~~~~~v~~l~fs~----d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~---------h~~-~v~~l~~~~~~~-~l~s  285 (764)
                        ...+..++|+|    ||+ ++++++ .+++|.+||..+++++..+...         |.. .+.++.++|+++ ++++
T Consensus       221 --g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          221 --GIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             --CSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             --CCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence              35689999999    999 666666 5899999999999988887621         223 788999999776 5667


Q ss_pred             EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                      ...++.|.+||+......  .+... .+...+..+.|+|+|+++++++ .+++|.+||+.+++....+..          
T Consensus       298 ~~~~g~i~vvd~~~~~~l--~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~----------  364 (543)
T 1nir_A          298 VKETGKVLLVNYKDIDNL--TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV----------  364 (543)
T ss_dssp             ETTTTEEEEEECTTSSSC--EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC----------
T ss_pred             ECCCCeEEEEEecCCCcc--eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc----------
Confidence            778899999998765321  11222 3566788899999999877655 477888888765432211100          


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                                                                                                      
T Consensus       365 --------------------------------------------------------------------------------  364 (543)
T 1nir_A          365 --------------------------------------------------------------------------------  364 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEe-CCCeEEEEECCC-------CCeeeeEecC
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG-YHGDIKVWDFKG-------RDLKSRWEVG  515 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~-~dg~v~iwd~~~-------~~~~~~~~~~  515 (764)
                                 +             ...|.+....+ ++|+ +..++++. .|++|.+||+.+       .+.++++..+
T Consensus       365 -----------g-------------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          365 -----------G-------------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             -----------S-------------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             -----------C-------------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence                       0             01354433333 4666 56666665 589999999998       7888999876


Q ss_pred             -cceEEEEEeecCCEEEEEe-------CCCeEEEEEccCCeEE-EEe--------ecCCCCeeEEEEcCCCcEEEEEe--
Q 004270          516 -CSLVKIVYHRVNGLLATVA-------DDLVIRLFDVVALRMV-RKF--------EGHTDRITDFCFSEDGKWLLSSG--  576 (764)
Q Consensus       516 -~~i~~~~~s~~~~~la~~~-------~d~~i~v~d~~~~~~~-~~~--------~~h~~~i~~l~~s~dg~~l~s~s--  576 (764)
                       ..+..++++|++++|++++       .+++|.|||+.+++.. ..+        ..|...+..+.|+|||++|.++.  
T Consensus       420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~  499 (543)
T 1nir_A          420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  499 (543)
T ss_dssp             CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEEC
T ss_pred             CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeec
Confidence             5778899999999999987       2679999999999876 443        35678899999999999988662  


Q ss_pred             ---CCCcEEEEEcCccceEEEEeeCC
Q 004270          577 ---MDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       577 ---~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                         .|+.|.|||.++++++..++.+.
T Consensus       500 ~~~~~~~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          500 GKNDSSALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             CCCCCCeEEEEECCCceEEEeecCCC
Confidence               47999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.7e-29  Score=267.06  Aligned_cols=257  Identities=16%  Similarity=0.298  Sum_probs=218.7

Q ss_pred             EEecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCcc------cccceeeEecCCccccEEEEeCCCCCCEEEEE
Q 004270           87 ATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEE------NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG  157 (764)
Q Consensus        87 ~~~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~  157 (764)
                      ....+|.+.|+++++.   +.+|++++.||.|++||+.....      ...+...+..|...+..+.|+|++. ..|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-GYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-TEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-CeEEEE
Confidence            3477899999999984   56899999999999999986211      1223667778888889999999983 289999


Q ss_pred             eCCCcEEEEeCCCCeE-------EEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCC---ceEEEEeccCCCC
Q 004270          158 SQEGSLQLWNISTKKK-------LYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYD---EELVTFTHSMRGA  226 (764)
Q Consensus       158 ~~dg~i~iwd~~~~~~-------~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~  226 (764)
                      +.||.|++||+.++..       ...+.+|...|.+++|+| ++.++++++.||.|++||++++   +.+..+.. |...
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~  279 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAE  279 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCC
Confidence            9999999999987422       466789999999999999 6789999999999999999987   46666654 4789


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCC--
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG--  302 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~--  302 (764)
                      |++++|+|++++++++|+.||.|++||+++ +..+..+. +|...|.+++|+|+++ +|++++.|+.|++|++.....  
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            999999999987899999999999999998 46677777 8999999999999985 799999999999999987322  


Q ss_pred             --------CceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecc
Q 004270          303 --------DPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       303 --------~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~  346 (764)
                              .+.++....+|...|.+++|+|++. ++++++.||.|++|++...
T Consensus       359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                    1356777889999999999999998 8999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-30  Score=265.09  Aligned_cols=266  Identities=12%  Similarity=0.089  Sum_probs=212.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc---------CCceEEEEecc
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR---------YDEELVTFTHS  222 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~---------~~~~~~~~~~~  222 (764)
                      +.+++|+.||.|++||+.+++.+..+.  ...|.++.++|+   +++++.|+.|++|+..         +++.+..+...
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            689999999999999999999988887  467888889998   9999999999999654         66667777766


Q ss_pred             CCCCEEEEEEee--CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          223 MRGAVTALAFSS--DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       223 ~~~~v~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      |.+.|.+++|+|  +++ ++++|+.||.|++||+++++........|...|.+++|+|++.+|++|+.|+.|++||+...
T Consensus       124 ~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            678999999999  998 99999999999999999998877665456778999999999999999999999999998876


Q ss_pred             CCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270          301 DGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (764)
Q Consensus       301 ~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (764)
                      ..   ....+.+ |..+|++++|+|++.+|++++ |+.|++||+++......+..                         
T Consensus       203 ~~---~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-------------------------  253 (343)
T 3lrv_A          203 DQ---ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-------------------------  253 (343)
T ss_dssp             TS---CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-------------------------
T ss_pred             CC---CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-------------------------
Confidence            32   2144556 999999999999999999999 55999999876543222110                         


Q ss_pred             eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (343)
T 3lrv_A          254 --------------------------------------------------------------------------------  253 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecCccccccccccCcE--EEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeeeEecCcceEEEEEee---cCCEEEEE
Q 004270          460 GSYLDMSERSNYAHNGEV--VGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATV  533 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~---~~~~la~~  533 (764)
                        +        ..|...+  .+++|+|++++|++++. |+.+++|++.+.......   .++..++|++   +...++++
T Consensus       254 --~--------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          254 --Y--------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             --C--------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEE
T ss_pred             --c--------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEE
Confidence              0        0111111  57899999999999888 999999998766543332   5677788888   88899999


Q ss_pred             eCCCeEEEEEcc
Q 004270          534 ADDLVIRLFDVV  545 (764)
Q Consensus       534 ~~d~~i~v~d~~  545 (764)
                      +.|+.+.++-..
T Consensus       321 ~~d~~~~~~~~~  332 (343)
T 3lrv_A          321 CGDGGIAAILKT  332 (343)
T ss_dssp             EETTEEEEEEEC
T ss_pred             ecCCceEEEEec
Confidence            999988887543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.4e-30  Score=269.32  Aligned_cols=287  Identities=12%  Similarity=0.070  Sum_probs=188.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEE----eccCCCCEEEEEEee--------CCCCEEEEEeC
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF----THSMRGAVTALAFSS--------DGQPLLASGAS  245 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~l~fs~--------d~~~~l~sg~~  245 (764)
                      ..|...+....+++++.+||+|+.|++|+|||+++++.....    ..+|.+.|.+++|+|        |++ +||+|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD  164 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence            345556666677888899999999999999999988765432    245689999999998        777 9999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      |++|+|||+.++..+..+. .|...|.+++|+|++. +|++++.|++|++||+...............+...+....+.+
T Consensus       165 D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             CCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            9999999999888777777 7999999999999875 8999999999999998766432222111111111111111111


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      .....                                                                           
T Consensus       244 ~~~~~---------------------------------------------------------------------------  248 (393)
T 4gq1_A          244 LVNTC---------------------------------------------------------------------------  248 (393)
T ss_dssp             GC------------------------------------------------------------------------------
T ss_pred             ceeee---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                    ...++...+.++.++ ++|+.+++++.|+.+++||+..+.....+.        .|...+..+.+.
T Consensus       249 --------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~  306 (393)
T 4gq1_A          249 --------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLL  306 (393)
T ss_dssp             -----------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------------CCS
T ss_pred             --------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe--------eecCccccEEEc
Confidence                          001334667778776 799999999999999999998887766654        677777777777


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee--cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR--VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (764)
Q Consensus       484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~--~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~  561 (764)
                      |+.+.+...                       .......+++  ++.++++|+.||.|++||+.+++.+..+.+|..+|.
T Consensus       307 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~  363 (393)
T 4gq1_A          307 PNVQGISLF-----------------------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV  363 (393)
T ss_dssp             CSEEEECSS-----------------------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             ccccccccc-----------------------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence            764432211                       1111223333  344677888999999999999999888899999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          562 DFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      +++|||||++||+++.|| +.+|.+.
T Consensus       364 svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          364 DFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            999999999999999776 6666654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-30  Score=294.43  Aligned_cols=262  Identities=15%  Similarity=0.208  Sum_probs=219.7

Q ss_pred             eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEE
Q 004270          131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIH  206 (764)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~  206 (764)
                      ..+..|.+.+..++|+|++  +++++|+.||.|++||+.  +++.+..+.+|.+.|.+++|+|+  +++|++|+.||.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg--~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSS--CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCC--CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3456788888899999999  789999999999999998  56788899999999999999998  99999999999999


Q ss_pred             EEEccCCc--eEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEec--
Q 004270          207 VHNVRYDE--ELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA--  278 (764)
Q Consensus       207 iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~--  278 (764)
                      +||+.+++  .+..+.. |...|++++|+|+  +. ++++|+.||.|++||+.++.  ....+. +|...|.+++|+|  
T Consensus        81 vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC
T ss_pred             EEECCCCcccccccccC-CCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcc
Confidence            99999987  5555544 4889999999999  77 99999999999999998873  333444 7999999999999  


Q ss_pred             -----------CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEee
Q 004270          279 -----------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       279 -----------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~~  344 (764)
                                 ++..+++++.||.|++||+............+.+|..+|.+++|+|+   ++++++++.||.|++||+.
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       58899999999999999998876555677788899999999999999   8999999999999999987


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      ++......                                                               .......+.
T Consensus       238 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~  254 (753)
T 3jro_A          238 NEQGPWKK---------------------------------------------------------------TLLKEEKFP  254 (753)
T ss_dssp             SSSSCCBC---------------------------------------------------------------CBSSSSCCS
T ss_pred             CCCCccee---------------------------------------------------------------EEeccCCCC
Confidence            65321110                                                               111122456


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                      ..+.+++|+|+|+++++|+.||.|++|++..+....
T Consensus       255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~  290 (753)
T 3jro_A          255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  290 (753)
T ss_dssp             SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred             CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence            789999999999999999999999999998655433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.5e-29  Score=265.22  Aligned_cols=203  Identities=10%  Similarity=0.040  Sum_probs=151.9

Q ss_pred             ecCCCCCCCCeEEEEEcc--------CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-C
Q 004270          417 LRPCPENPTAVKACTISA--------CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  487 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~--------~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  487 (764)
                      +....+|...|.+++|+|        +|++|++|+.|++|++||+.++.....+.        .|...|.+++|+|++ .
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--------~~~~~v~~v~~~p~~~~  200 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--------PLSSPGISVQFRPSNPN  200 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--------ECSSCEEEEEEETTEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--------CCCCCcEEEEECCCCCc
Confidence            345568889999999998        89999999999999999998887766654        889999999999987 4


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeEe--------------------------cCcceEEEEEe-ecCCEEEEEeCCCeEE
Q 004270          488 LMISAGYHGDIKVWDFKGRDLKSRWE--------------------------VGCSLVKIVYH-RVNGLLATVADDLVIR  540 (764)
Q Consensus       488 ~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------~~~~i~~~~~s-~~~~~la~~~~d~~i~  540 (764)
                      +|++++.||+|++||+.+++......                          +...+.++.|+ ++++.+++++.|+.++
T Consensus       201 ~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~  280 (393)
T 4gq1_A          201 QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWL  280 (393)
T ss_dssp             EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEE
T ss_pred             eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEE
Confidence            89999999999999998875443221                          22567788887 7999999999999999


Q ss_pred             EEEccCCeEEEEeecCCCCeeEEEEcC--------------------CCcEEEEEeCCCcEEEEEcCccceEEEEe-eCC
Q 004270          541 LFDVVALRMVRKFEGHTDRITDFCFSE--------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDV  599 (764)
Q Consensus       541 v~d~~~~~~~~~~~~h~~~i~~l~~s~--------------------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~  599 (764)
                      +||+.+++....+..|...+..+.++|                    ++.++++++.||+|++||+.+++++..+. ++.
T Consensus       281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~  360 (393)
T 4gq1_A          281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM  360 (393)
T ss_dssp             EEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred             EEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence            999999888777777766555544443                    34477888999999999999998877655 455


Q ss_pred             ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          600 SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       600 ~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +|.+++|||||++||+++.++  +.+|.+.
T Consensus       361 ~V~svafspdG~~LA~as~~G--v~lvrL~  388 (393)
T 4gq1_A          361 PIVDFCWHQDGSHLAIATEGS--VLLTRLM  388 (393)
T ss_dssp             CEEEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred             cEEEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence            799999999999999998664  8888764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=5.7e-28  Score=262.15  Aligned_cols=347  Identities=13%  Similarity=0.097  Sum_probs=265.0

Q ss_pred             ceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC--CCCe
Q 004270           95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI--STKK  172 (764)
Q Consensus        95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~--~~~~  172 (764)
                      +...+.+++..+++.+.|++|.+||..+++.    +.++..... ...++++|++  ++|++++.++.|.+||+  .+++
T Consensus       141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~----~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~  213 (543)
T 1nir_A          141 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI----VKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPT  213 (543)
T ss_dssp             CCSCCCGGGEEEEEEGGGTEEEEEETTTCCE----EEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCE
T ss_pred             cccccCCCCEEEEEEcCCCeEEEEECCCceE----EEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCc
Confidence            3444556788899999999999999999988    677764443 5567799999  89999999999999999  8999


Q ss_pred             EEEEEcCCCCCeEEEEEcC----CCCEEEEEEc-CCeEEEEEccCCceEEEEecc----------CCCCEEEEEEeeCCC
Q 004270          173 KLYEFKGWGSSISSCVSSP----ALDVVAVGCS-DGKIHVHNVRYDEELVTFTHS----------MRGAVTALAFSSDGQ  237 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp----~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~----------~~~~v~~l~fs~d~~  237 (764)
                      .+.++.. ...+..++|+|    +|++|++++. +++|.+||..+++.+..+...          ....+.++.++|++.
T Consensus       214 ~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          214 KVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             EEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence            9999985 56789999999    9999999884 899999999999999888642          133789999999988


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccC----
Q 004270          238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSG----  312 (764)
Q Consensus       238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~----  312 (764)
                      .++++...++.|.+||+.+.+.+......+...+.++.|+|++++++++ ..+++|.+||..+.    +++..+..    
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~g~~p  368 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTP  368 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSB
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeeccCCCC
Confidence            6888888999999999988765542222466778899999999976655 56899999988765    45544443    


Q ss_pred             CCCCCeeEEEecC-CCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          313 HSAPPLCIRFYAN-GRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       313 h~~~v~~i~~~~~-~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      |......+ ++|+ +..++++. .|++|.+||+.+......                                       
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~---------------------------------------  408 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---------------------------------------  408 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT---------------------------------------
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh---------------------------------------
Confidence            54444333 4676 55566664 578899998764210000                                       


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (764)
                                                                                      ..+.+..+        
T Consensus       409 ----------------------------------------------------------------~~~~v~~l--------  416 (543)
T 1nir_A          409 ----------------------------------------------------------------AWKKVAEL--------  416 (543)
T ss_dssp             ----------------------------------------------------------------BTSEEEEE--------
T ss_pred             ----------------------------------------------------------------cCeEEEEE--------
Confidence                                                                            01111222        


Q ss_pred             ccccCcEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCCee-eeE---------ecCcceEEEEEeecCCEEEEE
Q 004270          471 YAHNGEVVGVACDSTNTLMISAG-------YHGDIKVWDFKGRDLK-SRW---------EVGCSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~-~~~---------~~~~~i~~~~~s~~~~~la~~  533 (764)
                      ..|...+..++++|++++|++++       .+++|.+||+.+++.. ..+         .+...+..+.|+|+|+.++++
T Consensus       417 ~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          417 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence            25667778899999999999887       3789999999999877 443         224788999999999999877


Q ss_pred             e-----CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270          534 A-----DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  571 (764)
Q Consensus       534 ~-----~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~  571 (764)
                      .     .++.|.|||..+++++.+++.+.-      .+|+|++
T Consensus       497 ~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~------~~p~g~~  533 (543)
T 1nir_A          497 VWNGKNDSSALVVVDDKTLKLKAVVKDPRL------ITPTGKF  533 (543)
T ss_dssp             EECCTTSCCEEEEEETTTTEEEEEECCTTC------CSEEEEE
T ss_pred             eecCCCCCCeEEEEECCCceEEEeecCCCc------cCCCeee
Confidence            3     479999999999999999986532      3466554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4e-27  Score=248.12  Aligned_cols=300  Identities=11%  Similarity=0.061  Sum_probs=232.9

Q ss_pred             CCEEEEEEeeCCCCEEEEEe----CCC----cEEEEEC--CCceee--eeeecccccCeeEEEEec--------------
Q 004270          225 GAVTALAFSSDGQPLLASGA----SSG----VISIWNL--EKRRLQ--SVIREAHDNAIISLHFFA--------------  278 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~----~dg----~i~iwd~--~~~~~~--~~~~~~h~~~v~~l~~~~--------------  278 (764)
                      ..+...+|.+.|..++++|+    .+|    .|++||+  .+++.+  ..+. +|...+..+++.+              
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            36777888898887888886    467    8999999  888876  3355 7888888777764              


Q ss_pred             CCCEEEEEcCC------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC---cEEEEEeeccccc
Q 004270          279 NEPVLMSASAD------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQS  349 (764)
Q Consensus       279 ~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~~~~  349 (764)
                      .+..++.++.+      +.|++||++..     ..+.+.+|...+.+++|+|||++|++++.++   .|++||+.+++..
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR  216 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC-----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC-----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence            15566666554      79999998643     2345567889999999999999999999875   8999998765321


Q ss_pred             ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEE
Q 004270          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (764)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (764)
                      ..                                                                     ..+...+.+
T Consensus       217 ~l---------------------------------------------------------------------~~~~~~~~~  227 (415)
T 2hqs_A          217 QV---------------------------------------------------------------------ASFPRHNGA  227 (415)
T ss_dssp             EE---------------------------------------------------------------------ECCSSCEEE
T ss_pred             Ee---------------------------------------------------------------------ecCCCcccC
Confidence            10                                                                     023367899


Q ss_pred             EEEccCCCEEE-EEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEEEC
Q 004270          430 CTISACGNFAV-LGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDF  503 (764)
Q Consensus       430 ~~~s~~g~~l~-~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iwd~  503 (764)
                      ++|+|+|++|+ +++.+|  .|++||+.++... .+        ..|...+.+++|+|+|++|++++. ++  .|.+||+
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l--------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV--------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC--------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC--------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            99999999888 555555  4999999887653 33        367889999999999999988886 44  6888899


Q ss_pred             CCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC-
Q 004270          504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-  579 (764)
Q Consensus       504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg-  579 (764)
                      .+++..........+.+++|+|+|++|++++.+   ..|++||+.+++. ..+..|. .+.+++|+|||++|++++.|+ 
T Consensus       299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred             CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence            888755444445778899999999999988764   5899999998877 4566664 899999999999999988777 


Q ss_pred             --cEEEEEcCccceEEEEeeC-CceEEEEEcCCCC
Q 004270          580 --SLRIWDVILARQIDAIHVD-VSITALSLSPNMD  611 (764)
Q Consensus       580 --~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~  611 (764)
                        .|++||+. +.....+..+ ..|.+++|+|.-.
T Consensus       377 ~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          377 GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             ccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence              79999987 5556666655 4699999999653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.4e-26  Score=265.26  Aligned_cols=355  Identities=10%  Similarity=0.069  Sum_probs=256.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEEc-CC-----eEEEEEccCCceEEEEeccCC-----------------------CCEEEEE
Q 004270          181 GSSISSCVSSPALDVVAVGCS-DG-----KIHVHNVRYDEELVTFTHSMR-----------------------GAVTALA  231 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~-----------------------~~v~~l~  231 (764)
                      ...+.+++|||||++|++++. |+     .|++||+.+++....+..+..                       ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567899999999999999998 88     899999999987776654311                       2378999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      |+|||+ .|++++. +.|++||+.++.  ....+. .|...+..++|+|||++|++++ ++.|.+|+++..    .....
T Consensus       116 ~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g----~~~~~  187 (741)
T 2ecf_A          116 WSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG----RQMQL  187 (741)
T ss_dssp             ECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT----EEEEC
T ss_pred             ECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC----CEEEe
Confidence            999999 7777775 999999999882  333444 5788899999999999999987 468999988654    33333


Q ss_pred             ccCCCC----------------CCeeEEEecCCCEEEEEeCCC-cEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270          310 RSGHSA----------------PPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       310 ~~~h~~----------------~v~~i~~~~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      ...+..                .+..++|+|||++|++++.|+ .+..|.....     ...                  
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~-----~p~------------------  244 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV-----YAD------------------  244 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE-----CSS------------------
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC-----CCC------------------
Confidence            323322                257899999999999887553 3444441110     000                  


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  452 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~  452 (764)
                                                                         ...+..+.+...|.    ......|.+||
T Consensus       245 ---------------------------------------------------~~~~~~~~~~~~g~----~~~~~~l~~~d  269 (741)
T 2ecf_A          245 ---------------------------------------------------RTDVIEQRYPAAGD----ANVQVKLGVIS  269 (741)
T ss_dssp             ---------------------------------------------------CEEEEEEECCBTTS----CCCEEEEEEEC
T ss_pred             ---------------------------------------------------cccceEeecCCCCC----CCCeeEEEEEE
Confidence                                                               00111112221111    00112567778


Q ss_pred             CcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEecCc-----ceEEE
Q 004270          453 LQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEVGC-----SLVKI  521 (764)
Q Consensus       453 ~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~-----~i~~~  521 (764)
                      +.+ +........      ..|...+..++| |||++|++++.     +..|++||+.+++....+..+.     .+..+
T Consensus       270 ~~~~~~~~~~~~~------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          270 PAEQAQTQWIDLG------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             SSTTCCCEEECCC------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             CCCCCceEEecCC------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            877 664433210      147788999999 99999987764     5789999999998877766543     45689


Q ss_pred             EEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecCCCCeeEE-EEcCCCcEEEE-EeCCC--cEEEEEcCc-cceEEEE
Q 004270          522 VYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDF-CFSEDGKWLLS-SGMDG--SLRIWDVIL-ARQIDAI  595 (764)
Q Consensus       522 ~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h~~~i~~l-~~s~dg~~l~s-~s~dg--~i~iwd~~~-~~~~~~~  595 (764)
                      +|+|||+++++++.++.++||.++ +++ ...+..|...|..+ .|+|||++|+. ++.++  .+++|++.. +.....+
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l  421 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL  421 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence            999999999999999988888765 445 78888888889887 59999997764 45555  899999874 6666677


Q ss_pred             eeCCceEEEEEcCCCCeEEEEEeCC---CeEEEEecc
Q 004270          596 HVDVSITALSLSPNMDVLATAHVDQ---NGVYLWVNR  629 (764)
Q Consensus       596 ~~~~~v~~l~~sp~g~~lat~~~d~---~~i~lW~~~  629 (764)
                      .....+.+++|||||++|+....+.   ..+++|+..
T Consensus       422 ~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          422 SKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             ccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            6666689999999999998876653   147888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.9e-26  Score=242.98  Aligned_cols=295  Identities=11%  Similarity=0.076  Sum_probs=224.8

Q ss_pred             EEeCCCCCCEEEEEe----CCC----cEEEEeC--CCCeEE--EEEcCCCCCeEEEEEcC--------------CCCEEE
Q 004270          144 IMHPDTYLNKVIVGS----QEG----SLQLWNI--STKKKL--YEFKGWGSSISSCVSSP--------------ALDVVA  197 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~i~~~~~sp--------------~~~~la  197 (764)
                      .|.+.+. +.+++|+    .+|    .+++||+  .+++++  ..+.+|...+..+++++              .+..++
T Consensus        69 ~w~~~g~-~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~  147 (415)
T 2hqs_A           69 AWSALGI-DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA  147 (415)
T ss_dssp             HHHTTTC-CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred             HHHhcCC-CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence            3555553 5676776    467    8999999  999988  45888988888887775              256677


Q ss_pred             EEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC---cEEEEECCCceeeeeeecccc
Q 004270          198 VGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG---VISIWNLEKRRLQSVIREAHD  268 (764)
Q Consensus       198 ~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~h~  268 (764)
                      .++.+      +.|++||+.. .....+..+ ...+.+++|+|||+ .|++++.++   .|++||+.+++... +. .|.
T Consensus       148 ~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~-~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~  222 (415)
T 2hqs_A          148 YVVQTNGGQFPYELRVSDYDG-YNQFVVHRS-PQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VA-SFP  222 (415)
T ss_dssp             EEEECSSSSCCEEEEEEETTS-CSCEEEEEE-SSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEE-EE-CCS
T ss_pred             EEEecCCCCccceEEEEcCCC-CCCEEEeCC-CCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEE-ee-cCC
Confidence            66654      7999999974 455666554 68899999999999 888888775   99999999988754 44 588


Q ss_pred             cCeeEEEEecCCCEEE-EEcCCCc--EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCc--EEEEE
Q 004270          269 NAIISLHFFANEPVLM-SASADNS--IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA--FRLFS  342 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~-s~~~d~~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~--i~i~d  342 (764)
                      ..+.+++|+|||+.|+ +++.++.  |++||+...    . ...+..|...+.+++|+|||++|++++. ++.  |.+||
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            8999999999999877 6666665  777776554    2 2455678888999999999998888775 343  33334


Q ss_pred             eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                      +                                                                               
T Consensus       298 ~-------------------------------------------------------------------------------  298 (415)
T 2hqs_A          298 I-------------------------------------------------------------------------------  298 (415)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            3                                                                               


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---CeEE
Q 004270          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---GDIK  499 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~  499 (764)
                                                     .++.... +        ..|...+.+++|+|+|++|++++.+   ..|+
T Consensus       299 -------------------------------~~~~~~~-l--------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          299 -------------------------------NGGAPQR-I--------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             -------------------------------TSSCCEE-C--------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             -------------------------------CCCCEEE-E--------ecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence                                           2222111 1        1455677889999999988888764   5899


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      +||+.+++... +..+..+.+++|+|+|++|++++.++   .|++||+. ++....+.+|.+.|.+++|+|.-.
T Consensus       339 ~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          339 KQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            99999888754 33345899999999999999988877   89999987 556788999999999999999643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.6e-25  Score=255.68  Aligned_cols=367  Identities=11%  Similarity=0.084  Sum_probs=256.2

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCCCCEEEEEEcC---------CeEEE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPALDVVAVGCSD---------GKIHV  207 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~~~~la~g~~d---------g~i~i  207 (764)
                      ...++|+|++  +++++ +.||+|++||+.+++....+..|..   .|.+++|||||++|++++.+         +.+.+
T Consensus        19 ~~~~~~spdg--~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           19 DPEAKWISDT--EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCBSSSS--CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccEEcCCC--cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            4567899999  55555 7899999999999999888888765   49999999999999999874         78889


Q ss_pred             EEccCCceEEEEecc--CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC---------------
Q 004270          208 HNVRYDEELVTFTHS--MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA---------------  270 (764)
Q Consensus       208 wd~~~~~~~~~~~~~--~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~---------------  270 (764)
                      ||+.+++. ..+...  +...+..++|+|||+ .|+.++. +.|++||+.+++...... .+...               
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTT
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEe
Confidence            99998876 333322  233488999999999 6777764 799999999987766555 33333               


Q ss_pred             ---eeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270          271 ---IISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (764)
Q Consensus       271 ---v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~  346 (764)
                         +.+++|+|||+.|++++.| +.+++|++.....         .+...+..+.|.++|..    ..+..|++||+.++
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~  238 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGP  238 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS---------SSSCCCEEEECCBTTSC----CCEEEEEEEESSSS
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCC---------cCCCcceeccCCCCCCC----CCeeEEEEEECCCC
Confidence               3789999999999988764 5688887754321         13345788888887752    33457888888765


Q ss_pred             cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (764)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  426 (764)
                      .....+....                                                              ....+...
T Consensus       239 ~~~~~l~~~~--------------------------------------------------------------~~~~~~~~  256 (723)
T 1xfd_A          239 THDLEMMPPD--------------------------------------------------------------DPRMREYY  256 (723)
T ss_dssp             CCCEECCCCC--------------------------------------------------------------CGGGSSEE
T ss_pred             ceeEEeeCCc--------------------------------------------------------------cCCCccce
Confidence            4322221100                                                              00012356


Q ss_pred             eEEEEEccCCCEEEEEecC----CcEEEEECcCCcccceecCccccccccccCcE----EEEEECCCCCEEEE--EeCCC
Q 004270          427 VKACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEV----VGVACDSTNTLMIS--AGYHG  496 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~~~~~~~l~s--~~~dg  496 (764)
                      +..++|+|||+++++....    ..|.+||+.+++....+.       ..+...+    ..++|+|+|+.|+.  +..++
T Consensus       257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-------EECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-------eccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence            8899999999998776543    579999999987665543       1233333    37899999997775  44666


Q ss_pred             ------eEEEEE-CCCCCe--eeeEe-cCcceEE-EEEeecCCEEEEEeCC---CeEEEEEccCC--eEEEEeec---CC
Q 004270          497 ------DIKVWD-FKGRDL--KSRWE-VGCSLVK-IVYHRVNGLLATVADD---LVIRLFDVVAL--RMVRKFEG---HT  557 (764)
Q Consensus       497 ------~v~iwd-~~~~~~--~~~~~-~~~~i~~-~~~s~~~~~la~~~~d---~~i~v~d~~~~--~~~~~~~~---h~  557 (764)
                            .|.+|| ..+++.  ...+. .+..+.. ++|+|||+.|++.+.+   +.+++|++...  .....+.+   |.
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  409 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN  409 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred             CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence                  567777 344441  33443 3444554 6999999999876655   78999998643  23344544   67


Q ss_pred             CCeeEEEEcCCCcEEEEEeCC-C--cEEEEEcCccceEEEE
Q 004270          558 DRITDFCFSEDGKWLLSSGMD-G--SLRIWDVILARQIDAI  595 (764)
Q Consensus       558 ~~i~~l~~s~dg~~l~s~s~d-g--~i~iwd~~~~~~~~~~  595 (764)
                      ..+..++|||||++|+..... .  ...+++..++..+..+
T Consensus       410 ~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          410 CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            778999999999988865432 2  3445566566555444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.6e-26  Score=261.04  Aligned_cols=350  Identities=9%  Similarity=0.040  Sum_probs=244.6

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC---CEEEEEEeeCCCCEEEEEeCC---------CcE
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGASS---------GVI  249 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~fs~d~~~~l~sg~~d---------g~i  249 (764)
                      ..+.+++|+|||+++++ +.||.|++||+.+++....+..+ ..   .|.+++|+|||+ .|++++.+         +.|
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~-~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-KIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-TTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc-cccccccceEEECCCCC-EEEEEecCccceeecceeeE
Confidence            34678899999997776 78999999999999887777554 33   499999999999 77777653         788


Q ss_pred             EEEECCCceeeeeee--cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-----------
Q 004270          250 SIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-----------  316 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-----------  316 (764)
                      .+||+.+++. ..+.  .+|...+..++|+|||+.|++++. +.|++|+.....    .......+...           
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~----~~~~~~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ----AIRVVSTGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC----CEEEECCCBTTTEEEEECCHHH
T ss_pred             EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc----eEEEecCCCCCceECcccceeE
Confidence            9999998876 2222  134556899999999999999886 789999876542    22222333333           


Q ss_pred             -------CeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          317 -------PLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       317 -------v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                             +.+++|+|||+.|++++.| +.+.+|++.....                                        
T Consensus       168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----------------------------------------  207 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----------------------------------------  207 (723)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----------------------------------------
T ss_pred             EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----------------------------------------
Confidence                   3789999999999988755 4566676532110                                        


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER  468 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~  468 (764)
                                                       .....+..+.+.++|..    ..+..|.+||+.++.....+...  .
T Consensus       208 ---------------------------------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~--~  248 (723)
T 1xfd_A          208 ---------------------------------SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPP--D  248 (723)
T ss_dssp             ---------------------------------SSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCC--C
T ss_pred             ---------------------------------cCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCC--c
Confidence                                             01123566777777652    23458999999988754444310  0


Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCCeeeeEecC--cce----EEEEEeecCCEEEEE--eCC
Q 004270          469 SNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDLKSRWEVG--CSL----VKIVYHRVNGLLATV--ADD  536 (764)
Q Consensus       469 ~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~--~~i----~~~~~s~~~~~la~~--~~d  536 (764)
                      ....+...+..++|+|||+++++...    +..|++||+.+++....+...  ..+    ..++|+|||+.|+..  ..+
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence            01124678999999999998877653    367999999999877665432  333    378999999977754  456


Q ss_pred             C------eEEEEE-ccCCe--EEEEeecCCCCeeE-EEEcCCCcEEEEEeCC---CcEEEEEcCccc--eEEEEee----
Q 004270          537 L------VIRLFD-VVALR--MVRKFEGHTDRITD-FCFSEDGKWLLSSGMD---GSLRIWDVILAR--QIDAIHV----  597 (764)
Q Consensus       537 ~------~i~v~d-~~~~~--~~~~~~~h~~~i~~-l~~s~dg~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~----  597 (764)
                      +      .|++|| ..+++  +...+..+...+.. ++|||||++|+..+.+   +.+++|++....  ....+..    
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  408 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE  408 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence            6      566777 34443  14555544444554 6999999999866655   789999987532  3333332    


Q ss_pred             CCceEEEEEcCCCCeEEEEEeC
Q 004270          598 DVSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       598 ~~~v~~l~~sp~g~~lat~~~d  619 (764)
                      ...+..++|||||++|+.....
T Consensus       409 ~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          409 NCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             SCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCeEEEEECCCCCEEEEEccC
Confidence            3348899999999999876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=4.6e-25  Score=252.57  Aligned_cols=334  Identities=11%  Similarity=0.111  Sum_probs=242.2

Q ss_pred             CccccEEEEeCCCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEEcCCCC------------------------CeEE
Q 004270          137 DKFTPTCIMHPDTYLNKVIVGSQ-EG-----SLQLWNISTKKKLYEFKGWGS------------------------SISS  186 (764)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~i~~  186 (764)
                      ...+..+.|+|++  ++|++++. ++     .|++||+.+++....+..+..                        .|.+
T Consensus        36 ~~~~~~~~~SpdG--~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDG--SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTS--SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCC--CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            4456788999999  89999988 88     899999999998887765543                        3889


Q ss_pred             EEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          187 CVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       187 ~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      ++|||||++|++++. +.|.+||+.++.  ....+..+ ...+.+++|+|||+ .|+.++ ++.|++||+.+++......
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC-CcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEecc
Confidence            999999999999987 999999999873  33444443 67899999999999 777776 5699999999987765544


Q ss_pred             cccccC----------------eeEEEEecCCCEEEEEcCCC---------------------------------cEEEE
Q 004270          265 EAHDNA----------------IISLHFFANEPVLMSASADN---------------------------------SIKMW  295 (764)
Q Consensus       265 ~~h~~~----------------v~~l~~~~~~~~l~s~~~d~---------------------------------~i~vw  295 (764)
                       .+...                +.+++|+|||++|++++.|+                                 .|.+|
T Consensus       190 -~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 -DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             -CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             -CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence             33322                47899999999999987665                                 56677


Q ss_pred             EecC-CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-----CCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          296 IFDT-TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       296 ~~~~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      |++. .  ....+.....|...+..++| |||++|++++.     +..|++||+.++.....+...              
T Consensus       269 d~~~~~--~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------------  331 (741)
T 2ecf_A          269 SPAEQA--QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET--------------  331 (741)
T ss_dssp             CSSTTC--CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE--------------
T ss_pred             ECCCCC--ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC--------------
Confidence            6654 3  22222222257788999999 99999997764     456888887654322211100              


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                                                                        ....-..+..++|+|+|++++++..+|.+.
T Consensus       332 --------------------------------------------------~~~~~~~~~~~~~spdg~~~~~~~~~g~~~  361 (741)
T 2ecf_A          332 --------------------------------------------------SPTWVPLHNSLRFLDDGSILWSSERTGFQH  361 (741)
T ss_dssp             --------------------------------------------------CSSCCCCCSCCEECTTSCEEEEECTTSSCE
T ss_pred             --------------------------------------------------CCCcCCcCCceEECCCCeEEEEecCCCccE
Confidence                                                              000001345678999999999999999777


Q ss_pred             EEECc-CCcccceecCccccccccccCcEEEE-EECCCCCEEEEEe-CCC--eEEEEECCC-CCeeeeEecCcceEEEEE
Q 004270          450 RFNLQ-SGISRGSYLDMSERSNYAHNGEVVGV-ACDSTNTLMISAG-YHG--DIKVWDFKG-RDLKSRWEVGCSLVKIVY  523 (764)
Q Consensus       450 i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~l~s~~-~dg--~v~iwd~~~-~~~~~~~~~~~~i~~~~~  523 (764)
                      +|.+. .+. ...+.        .|...+..+ .|+|+++.++..+ .++  .+++|++.. +.....+.....+..++|
T Consensus       362 l~~~~~~~~-~~~l~--------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~  432 (741)
T 2ecf_A          362 LYRIDSKGK-AAALT--------HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASF  432 (741)
T ss_dssp             EEEECSSSC-EEESC--------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEE
T ss_pred             EEEEcCCCC-eeeee--------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEE
Confidence            77665 333 44432        677788887 5999998776544 455  899999864 555566666677889999


Q ss_pred             eecCCEEEEEeCC----CeEEEEEccCCeEEEEee
Q 004270          524 HRVNGLLATVADD----LVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       524 s~~~~~la~~~~d----~~i~v~d~~~~~~~~~~~  554 (764)
                      +||+++++....+    ..+.+++...+ .++.+.
T Consensus       433 spdg~~l~~~~~~~~~p~~~~l~~~~~~-~~~~l~  466 (741)
T 2ecf_A          433 ARNASVYVDSWSNNSTPPQIELFRANGE-KIATLV  466 (741)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEEETTSC-EEECSS
T ss_pred             CCCCCEEEEEecCCCCCCeEEEEEcCCC-eEEEec
Confidence            9999998877554    47889988644 344443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=3.7e-24  Score=220.58  Aligned_cols=298  Identities=11%  Similarity=0.133  Sum_probs=211.6

Q ss_pred             EEEEEeCCCcEEEEECC-Cc--eeeeeeecccccCeeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCC
Q 004270          239 LLASGASSGVISIWNLE-KR--RLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~-~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      ++++++.++.|++||+. ++  +.+..+  .|...+.+++|+|++++|++++.+ +.|.+|+++...+....+.....+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            55555789999999995 34  333333  477889999999999988888876 9999999985444444555544444


Q ss_pred             CCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                       .+..++|+|+++++++++. ++.+.+||+..+......                                         
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-----------------------------------------  122 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-----------------------------------------  122 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE-----------------------------------------
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc-----------------------------------------
Confidence             8899999999998877765 788999998521100000                                         


Q ss_pred             EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcC-Cccccee--cCccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS-GISRGSY--LDMSERS  469 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~--~~~~~~~  469 (764)
                                           ..+    .....+.+++|+|+|+++++++ .++.|.+|++.+ +......  ..     
T Consensus       123 ---------------------~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----  172 (343)
T 1ri6_A          123 ---------------------DVV----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV-----  172 (343)
T ss_dssp             ---------------------EEE----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE-----
T ss_pred             ---------------------ccc----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc-----
Confidence                                 000    0114577889999999888887 889999999987 5443211  00     


Q ss_pred             cccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC--CCe--eeeEe---c----CcceEEEEEeecCCEEEEEe-CC
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG--RDL--KSRWE---V----GCSLVKIVYHRVNGLLATVA-DD  536 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~--~~~--~~~~~---~----~~~i~~~~~s~~~~~la~~~-~d  536 (764)
                      .......+.+++|+|++++++.++ .++.|.+|++..  ++.  .....   .    ...+..++|+|++++|+++. .+
T Consensus       173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  252 (343)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence            012345788999999999776555 889999999953  433  22222   1    13466899999999887554 78


Q ss_pred             CeEEEEEcc----CCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEc--Cccc--eEEEEeeCCceEEEEEc
Q 004270          537 LVIRLFDVV----ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILAR--QIDAIHVDVSITALSLS  607 (764)
Q Consensus       537 ~~i~v~d~~----~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~--~~~~--~~~~~~~~~~v~~l~~s  607 (764)
                      +.|++||+.    +.+.+..+..+.. +..++|+|||++|++++ .++.|.+|++  .+++  .+..+.......+++|.
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~  331 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN  331 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred             CEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEE
Confidence            999999998    3455666665554 89999999999988887 6899999954  4664  34555555567888888


Q ss_pred             CCCC
Q 004270          608 PNMD  611 (764)
Q Consensus       608 p~g~  611 (764)
                      |+.+
T Consensus       332 ~~~~  335 (343)
T 1ri6_A          332 AHEG  335 (343)
T ss_dssp             EEC-
T ss_pred             cccC
Confidence            7654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=9e-25  Score=248.59  Aligned_cols=366  Identities=8%  Similarity=0.017  Sum_probs=236.7

Q ss_pred             eEEEEEcCCCCEEEEEEcCCeEEEEEccCCce--EEEEeccC---------------CCCEEEEEEeeCCCCEEEEEeCC
Q 004270          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSM---------------RGAVTALAFSSDGQPLLASGASS  246 (764)
Q Consensus       184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~---------------~~~v~~l~fs~d~~~~l~sg~~d  246 (764)
                      +..+.|+  ++.+++++.++ | +||+.+++.  ...+....               ...|.+++|+|| + .++.+. +
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~-~~~~~~-~  100 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G-LVVLFT-Q  100 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-T-EEEEEE-T
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-C-eEEEEE-C
Confidence            4456777  66777777777 8 999999987  33333221               146999999999 5 444443 5


Q ss_pred             CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-----CCCCceeeEeccCCCC------
Q 004270          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGHSA------  315 (764)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h~~------  315 (764)
                      +.|++||+.+++.....  .+...+.+++|+|||+.|+++ .|+.|++|++..     ..    .......+..      
T Consensus       101 ~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~----~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR----AIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             TEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC----CEESCSCCBTTEEESS
T ss_pred             CEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC----cEEeccCCCCCeEccc
Confidence            99999999988765544  467789999999999999985 679999999876     42    2222222222      


Q ss_pred             --------CCeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          316 --------PPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       316 --------~v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                              .+.+++|+|||++|++++.| ..+..+.+.......                       +.........   
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~-----------------------~~~~~~~y~~---  227 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE-----------------------AESKPLYYPM---  227 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS-----------------------CEEEEECCCB---
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC-----------------------CceEEeeCCC---
Confidence                    25899999999999988733 223333322111000                       0000000000   


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECcCCcccce
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGS  461 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-----~i~i~~~~~~~~~~~  461 (764)
                            .........+++|++.+.....  +.....+...+.+++|+|||+++++++.++     .|.+||+.++.....
T Consensus       228 ------~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~  299 (706)
T 2z3z_A          228 ------AGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT  299 (706)
T ss_dssp             ------TTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred             ------CCCCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence                  0011234678899987655321  111224557799999999999999988775     999999999843333


Q ss_pred             ecCcccccccccc---CcEEEEEECC--CCCEEEEEeCCCeEEEEECC-CCCeeeeEecC-cceEE-EEEeecCCEEEEE
Q 004270          462 YLDMSERSNYAHN---GEVVGVACDS--TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVK-IVYHRVNGLLATV  533 (764)
Q Consensus       462 ~~~~~~~~~~~h~---~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~-~~i~~-~~~s~~~~~la~~  533 (764)
                      +..      ..+.   ..+..++|+|  +|+++++++.||.+++|.+. ++..+..+..+ ..+.. ++|+|+++.|+++
T Consensus       300 ~~~------~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          300 LFV------ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             EEE------EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE
T ss_pred             EEE------ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE
Confidence            220      0122   1246789999  99999999999999999886 55655655544 55665 7999999988766


Q ss_pred             eCC-C----eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC----CcEEEEEcCccceEEEEeeCCceEEE
Q 004270          534 ADD-L----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDVILARQIDAIHVDVSITAL  604 (764)
Q Consensus       534 ~~d-~----~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~v~~l  604 (764)
                      +.+ +    .|+.||+.+++ ...+. |...+.+++|||||++|+.+..+    +.|++||+.+++ ...+....++...
T Consensus       374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~  450 (706)
T 2z3z_A          374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGY  450 (706)
T ss_dssp             ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------
T ss_pred             ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeeccccchhhhc
Confidence            554 3    67777877765 34444 67789999999999998876443    569999999887 4444433334333


Q ss_pred             EE
Q 004270          605 SL  606 (764)
Q Consensus       605 ~~  606 (764)
                      .|
T Consensus       451 ~~  452 (706)
T 2z3z_A          451 AM  452 (706)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=4e-24  Score=219.12  Aligned_cols=283  Identities=9%  Similarity=0.056  Sum_probs=205.8

Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeE
Q 004270          230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLR  308 (764)
Q Consensus       230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~  308 (764)
                      ..|.+++..++++++.++.|.+||+.+++....+. .+...+ .++|+|+++++++++. ++.|.+||......   ...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~   77 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---KVV   77 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC---EEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce---eEE
Confidence            45666666578888899999999999999888877 455566 9999999996666655 88999998876531   144


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEEeCCC---cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270          309 FRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (764)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (764)
                      ....+..+..+++|+|+|++++++..++   .|.+||+.+++....+.                                
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------------------  125 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--------------------------------  125 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--------------------------------
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--------------------------------
Confidence            4455556665599999999999555543   89999986654322211                                


Q ss_pred             cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCc-EEEEECcCCcccceec
Q 004270          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGW-IERFNLQSGISRGSYL  463 (764)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~-i~i~~~~~~~~~~~~~  463 (764)
                                                           .......++++|+|++++++ ..++. +.+|++..........
T Consensus       126 -------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A          126 -------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             -------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             -------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence                                                 11456899999999866655 45578 9999987543322111


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCe---eeeEecCcceEEEEEeecCCEEEEEe-CCCe
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLLATVA-DDLV  538 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~---~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~  538 (764)
                       .   ....+.....+++|+|++++++.+ ..++.|++||+.+++.   +..+.....+..++|+|+|++++++. .++.
T Consensus       169 -~---~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          169 -Q---EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD  244 (331)
T ss_dssp             -E---EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred             -C---ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE
Confidence             0   001334568999999999966554 4689999999999998   88888888889999999999777665 4788


Q ss_pred             EEEEEccCCeE--EEEeecC----CCC---eeEEEEcCCCcEEEEEe-CCCcEEEEEcCccc
Q 004270          539 IRLFDVVALRM--VRKFEGH----TDR---ITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR  590 (764)
Q Consensus       539 i~v~d~~~~~~--~~~~~~h----~~~---i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~  590 (764)
                      |.+||+.+++.  +..+..+    ...   ...++|+|||++|++++ .++.|.+||+....
T Consensus       245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            99999999887  5444433    222   35589999999887655 56799999998644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=2.9e-24  Score=244.37  Aligned_cols=329  Identities=9%  Similarity=0.046  Sum_probs=231.5

Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee-eeeecccc-----------------cCeeEEEEecCCCEEEEEcC
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIREAHD-----------------NAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~h~-----------------~~v~~l~~~~~~~~l~s~~~  288 (764)
                      +..+.|.  |. .+++++.++ | +||+.+++.+ ..+. .|.                 ..|.+++|+|| ..++.+. 
T Consensus        28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-   99 (706)
T 2z3z_A           28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-   99 (706)
T ss_dssp             CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred             CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence            4557787  44 466666777 8 9999999873 3333 232                 46999999999 6655553 


Q ss_pred             CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec-----ccccccccchhhhHHHhh
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARK  363 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~  363 (764)
                      ++.+++||+...    .. ..+..+...+.+++|+|||+.|+++ .++.|++|++.+     +...........      
T Consensus       100 ~~~i~~~d~~~~----~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~------  167 (706)
T 2z3z_A          100 QGGLVGFDMLAR----KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE------  167 (706)
T ss_dssp             TTEEEEEETTTT----EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT------
T ss_pred             CCEEEEEECCCC----ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC------
Confidence            599999998654    22 2334567789999999999999985 678999999976     433221111000      


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                 .+            ..      +..   ....+...+.+++|||||++|++++
T Consensus       168 ---------------------------~~------------~~------g~~---~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          168 ---------------------------TL------------VY------GQA---VHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             ---------------------------TE------------EE------SSC---CGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             ---------------------------Ce------------Ec------ccc---hhhhhcCCCceEEECCCCCEEEEEE
Confidence                                       00            00      000   0001124567899999999999987


Q ss_pred             ---------------------------------cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270          444 ---------------------------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       444 ---------------------------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                                                       .++.|.+||+.++.......      ...|...+..++|+|||+.|+
T Consensus       200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------CSCTTCEEEEEEECTTSSEEE
T ss_pred             ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------CCCCceeEeeEEEECCCCEEE
Confidence                                             44689999999887544332      125677899999999999999


Q ss_pred             EEeCCC-----eEEEEECCCCCeeeeEe-cC--c---ceEEEEEee--cCCEEEEEeCCCeEEEEEcc-CCeEEEEeecC
Q 004270          491 SAGYHG-----DIKVWDFKGRDLKSRWE-VG--C---SLVKIVYHR--VNGLLATVADDLVIRLFDVV-ALRMVRKFEGH  556 (764)
Q Consensus       491 s~~~dg-----~v~iwd~~~~~~~~~~~-~~--~---~i~~~~~s~--~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h  556 (764)
                      +++.++     .|++||..+++....+. ..  .   .+..++|+|  ||++++++..++.++||+++ +++.+..+..|
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            988775     89999999984333332 21  1   246789999  99999999999999999887 67788888888


Q ss_pred             CCCeeE-EEEcCCCcEEEEEeC-CC----cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC---CeEEEEe
Q 004270          557 TDRITD-FCFSEDGKWLLSSGM-DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---NGVYLWV  627 (764)
Q Consensus       557 ~~~i~~-l~~s~dg~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~---~~i~lW~  627 (764)
                      ...+.. ++|+|||++|+.++. ++    .|..||+.+++ ...+.....+.+++|||||++|+.++.+.   ..|++|+
T Consensus       354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            888887 799999998876554 44    67777877766 44555556699999999999998876653   2599999


Q ss_pred             ccc
Q 004270          628 NRC  630 (764)
Q Consensus       628 ~~~  630 (764)
                      .+.
T Consensus       433 ~~~  435 (706)
T 2z3z_A          433 IGK  435 (706)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=5.9e-23  Score=210.40  Aligned_cols=289  Identities=11%  Similarity=0.103  Sum_probs=204.4

Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCce-EEEEec
Q 004270          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEE-LVTFTH  221 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~-~~~~~~  221 (764)
                      +|.+++. ..+++.+.++.|.+||..+++.+..+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus         4 ~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSN-FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCC-EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCC-EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            3455552 346677888999999999999999888777777 9999999997777666 89999999999987 666655


Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCC---cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCc-EEEEE
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNS-IKMWI  296 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~-i~vw~  296 (764)
                      + ..+..+++|+|+|+ +++++..++   .|.+||+.+++.+..+.  +.....+++|+|++++++++ ..++. +.+|+
T Consensus        82 ~-~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           82 G-QSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             C-SSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             C-CCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            4 55555599999999 666555443   89999999999888776  44567999999999855544 55688 99999


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccc---cccccchhhhHHHhhccchhhhhc
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQ---SRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      ++..................+..++|+|+|++++.++ .++.+.+||+.+++.   ...+.                   
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------------------  218 (331)
T 3u4y_A          158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-------------------  218 (331)
T ss_dssp             ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------------------
T ss_pred             ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------------------
Confidence            8854221111011123445679999999999766554 688999999876543   11110                   


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERF  451 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~  451 (764)
                                                                        ....+..++++|+|++++++.. ++.|.+|
T Consensus       219 --------------------------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~  248 (331)
T 3u4y_A          219 --------------------------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNF  248 (331)
T ss_dssp             --------------------------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred             --------------------------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence                                                              1145567899999998877654 6789999


Q ss_pred             ECcCCcc--cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCe
Q 004270          452 NLQSGIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL  508 (764)
Q Consensus       452 ~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~  508 (764)
                      |+.+++.  ...+..... ...........++|+|++++|++++ .++.|.+||+.+...
T Consensus       249 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          249 NQLSGTLSFVKSFGHGLL-IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             ETTTTEEEEEEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ECCCCceeeecccccccc-cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            9998876  222211000 0001112235689999999886655 567999999987543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1e-22  Score=209.71  Aligned_cols=303  Identities=15%  Similarity=0.196  Sum_probs=205.4

Q ss_pred             EEEEE-eCCCcEEEEeCC-CC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEcc--CCce--EEEEeccC
Q 004270          153 KVIVG-SQEGSLQLWNIS-TK--KKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVR--YDEE--LVTFTHSM  223 (764)
Q Consensus       153 ~l~~~-~~dg~i~iwd~~-~~--~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d-g~i~iwd~~--~~~~--~~~~~~~~  223 (764)
                      .++++ +.++.|++||+. ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..  
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--   82 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--   82 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--
Confidence            44544 779999999985 34  334444 467789999999999999998887 999999998  5553  334443  


Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---CceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDT  299 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~  299 (764)
                      ...+..++|+|+|+.+++++..++.|.+||+.   ..+....+.  ....+.+++|+|+++++++++ .++.|.+|+++.
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            34789999999999444444458899999994   344444444  344689999999999888777 899999999975


Q ss_pred             CCCCceee---EeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270          300 TDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (764)
Q Consensus       300 ~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (764)
                      .. .....   .........+..++|+|+++++++++ .++.+.+|++...........                     
T Consensus       161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~---------------------  218 (343)
T 1ri6_A          161 DG-HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ---------------------  218 (343)
T ss_dssp             TS-CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE---------------------
T ss_pred             CC-ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe---------------------
Confidence            22 11111   11222345788999999999776655 789999999853211000000                     


Q ss_pred             eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECc
Q 004270          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQ  454 (764)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~  454 (764)
                                                  .         ...+.........+..++|+|+|++++++. .++.|.+|++.
T Consensus       219 ----------------------------~---------~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          219 ----------------------------T---------LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ----------------------------E---------EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ----------------------------e---------ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence                                        0         000000001125677899999999887555 78999999998


Q ss_pred             --CCc--ccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEEC--CCCC--eeeeEecCcceEEEEEee
Q 004270          455 --SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF--KGRD--LKSRWEVGCSLVKIVYHR  525 (764)
Q Consensus       455 --~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~--~~~~--~~~~~~~~~~i~~~~~s~  525 (764)
                        ++.  ....+.        .+. .+.+++|+|++++|++++ .++.|.+|++  .+++  .+..+.......+++|.+
T Consensus       262 ~~~~~~~~~~~~~--------~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          262 EDGSVLSKEGFQP--------TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA  332 (343)
T ss_dssp             TTSCCEEEEEEEE--------CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred             CCCCceEEeeeec--------CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEc
Confidence              332  222221        233 388999999999888887 6899999955  4554  344455556677888877


Q ss_pred             cCC
Q 004270          526 VNG  528 (764)
Q Consensus       526 ~~~  528 (764)
                      +.+
T Consensus       333 ~~~  335 (343)
T 1ri6_A          333 HEG  335 (343)
T ss_dssp             EC-
T ss_pred             ccC
Confidence            543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2e-22  Score=208.58  Aligned_cols=277  Identities=9%  Similarity=0.079  Sum_probs=215.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEEc-------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270          181 GSSISSCVSSPALDVVAVGCS-------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd  253 (764)
                      ...+..++++|+++++++++.       ++.|.+||..+++.+..+..+  ..+..++|+|+|+.+++++..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            456789999999999988874       568999999999988888764  45789999999985566666789999999


Q ss_pred             CCCceeeeeeeccccc--------CeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          254 LEKRRLQSVIREAHDN--------AIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       254 ~~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      +.+++.+..+..++..        .+.+++|+|+++.+++++  .++.|.+||....    +.......+...+.+++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----KLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----EEEEEECCCCTTCCCCEEE
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----ceEEEecCCCCccceEEEC
Confidence            9999988887732221        278899999999777765  4788999987655    4555555566678899999


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      |+++++++++.++.+.+||+.+++....+.                                                  
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------  223 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKK--------------------------------------------------  223 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEE--------------------------------------------------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEE--------------------------------------------------
Confidence            999999998888888888865432211100                                                  


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (764)
                                                                       ..               ..++...+.+++|+
T Consensus       224 -------------------------------------------------~~---------------~~~~~~~~~~~~~s  239 (353)
T 3vgz_A          224 -------------------------------------------------LL---------------DDGKEHFFINISLD  239 (353)
T ss_dssp             -------------------------------------------------CC---------------CSSSCCCEEEEEEE
T ss_pred             -------------------------------------------------cC---------------CCCCCcccceEEEC
Confidence                                                             00               01345567889999


Q ss_pred             CCCCEEEEEeC-CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEeecCCCCee
Q 004270          484 STNTLMISAGY-HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRIT  561 (764)
Q Consensus       484 ~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h~~~i~  561 (764)
                      |++++++.++. ++.|.+||..+++.+..+....+ ..++|+|++++++++. .++.|.+||..+++.+..+..+ ..+.
T Consensus       240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~  317 (353)
T 3vgz_A          240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPN  317 (353)
T ss_dssp             TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCC
Confidence            99987766664 48999999999998888877654 5799999999766665 6899999999999999888754 4689


Q ss_pred             EEEEcCCCcEEEEEeCCC
Q 004270          562 DFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg  579 (764)
                      .++|+|||++|+++..++
T Consensus       318 ~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          318 SLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEECTTSCEEEEEEECC
T ss_pred             eEEEcCCCCEEEEEEccc
Confidence            999999999887776554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.7e-22  Score=207.58  Aligned_cols=299  Identities=9%  Similarity=0.009  Sum_probs=221.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC--CeEEEEEcCCCCEEEE-EEcCCeEEEEEccCCceEEEEeccCC----
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SISSCVSSPALDVVAV-GCSDGKIHVHNVRYDEELVTFTHSMR----  224 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~sp~~~~la~-g~~dg~i~iwd~~~~~~~~~~~~~~~----  224 (764)
                      +.+++++.++.|.+||..+++.+..+.....  .+..++|+|+++++++ +..++.|.+||+.+++.+..+...+.    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4688999999999999999999988874332  5789999999987655 45578999999999998887775321    


Q ss_pred             CCEEEEEEeeCCCCEEEEEe------------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270          225 GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i  292 (764)
                      ..+.+++|+|+|+ .++++.            .++.|.+||+.+++....+.  ....+.+++|+|++++|+++  ++.|
T Consensus        82 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeE
Confidence            2577899999998 666664            57999999999998887776  34568899999999988887  6889


Q ss_pred             EEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE--EEEeecccccccccchhhhHHHhhccchhhh
Q 004270          293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR--LFSVIQDQQSRELSQRHVAKRARKLKMKEEE  370 (764)
Q Consensus       293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (764)
                      .+||+...    ........+.. ...+.|+|+++.++..+..+...  +|..........                   
T Consensus       157 ~~~d~~~~----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------  212 (337)
T 1pby_B          157 HVMDPEAG----TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA-------------------  212 (337)
T ss_dssp             EEEETTTT----EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT-------------------
T ss_pred             EEEECCCC----cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccc-------------------
Confidence            99988755    34443333321 11237788888776655444332  222110000000                   


Q ss_pred             hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  450 (764)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i  450 (764)
                                                                            .        +.       .....|.+
T Consensus       213 ------------------------------------------------------~--------~~-------~~~~~v~~  223 (337)
T 1pby_B          213 ------------------------------------------------------D--------PT-------AYRTGLLT  223 (337)
T ss_dssp             ------------------------------------------------------S--------GG-------GEEEEEEE
T ss_pred             ------------------------------------------------------c--------cc-------ccccceEE
Confidence                                                                  0        00       00115777


Q ss_pred             EECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE
Q 004270          451 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL  530 (764)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l  530 (764)
                      ||+.+++.. ...      ...+...+.+++|+|++++++++  ++.|.+||+.+++.+..+.....+.+++|+|++++|
T Consensus       224 ~d~~~~~~~-~~~------~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          224 MDLETGEMA-MRE------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             EETTTCCEE-EEE------EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEE
T ss_pred             EeCCCCCce-Eee------cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEE
Confidence            777776654 221      12456678899999999999888  799999999999998888888888999999999999


Q ss_pred             EEEeCCCeEEEEEccCCeEEEEeecCC
Q 004270          531 ATVADDLVIRLFDVVALRMVRKFEGHT  557 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~~~~~~~~h~  557 (764)
                      ++++.++.|++||+.+++.+..+..+.
T Consensus       295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          295 WLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            999999999999999999988887553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.3e-22  Score=206.90  Aligned_cols=280  Identities=10%  Similarity=0.057  Sum_probs=217.0

Q ss_pred             cccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE-eCCCcE
Q 004270          267 HDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAF  338 (764)
Q Consensus       267 h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i  338 (764)
                      ....+..++|+|+++.+++++.       ++.|.+||..+.    +.+.... ....+..++|+|+|++++.+ ..++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL----EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC----CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC----eEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEE
Confidence            5567889999999998888774       457999977654    3333332 23457899999999966554 557899


Q ss_pred             EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (764)
Q Consensus       339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (764)
                      .+||..+++....+....                                                           ...
T Consensus       114 ~~~d~~~~~~~~~~~~~~-----------------------------------------------------------~~~  134 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDD-----------------------------------------------------------RKR  134 (353)
T ss_dssp             EEEETTTCCEEEEEESCC-----------------------------------------------------------CCC
T ss_pred             EEEeCCCCeeEEEEecCC-----------------------------------------------------------Ccc
Confidence            999987665433321100                                                           000


Q ss_pred             CCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          419 PCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                      +.......+..++++|+|++++++.  .++.|.+||..+++....+.        .+...+.+++|+|+++++++++.++
T Consensus       135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~  206 (353)
T 3vgz_A          135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------NTGKMSTGLALDSEGKRLYTTNADG  206 (353)
T ss_dssp             CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------CCCTTCCCCEEETTTTEEEEECTTS
T ss_pred             ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------CCCCccceEEECCCCCEEEEEcCCC
Confidence            0001113478899999999888876  47899999999988877663        3555678899999999999999999


Q ss_pred             eEEEEECCCCCeeeeEec-----CcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270          497 DIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      .|.+||..+++....+..     ...+..++|+|+++++++++. ++.|.+||..+++.+..+..+..  ..++|+|||+
T Consensus       207 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~  284 (353)
T 3vgz_A          207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARN  284 (353)
T ss_dssp             EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTT
T ss_pred             eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCC
Confidence            999999999998888775     245778999999998777765 49999999999999888875442  6799999999


Q ss_pred             EEEEEe-CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          571 WLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       571 ~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      +++.++ .++.|.+||+.+++.+..+.....+.+++|+|||++|++++.++
T Consensus       285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          285 EAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            666555 78999999999999999998888899999999999888887764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.2e-22  Score=208.76  Aligned_cols=298  Identities=9%  Similarity=0.037  Sum_probs=215.8

Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEeccCCC-CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc----c
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG-AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----D  268 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h----~  268 (764)
                      +++++++.++.|.+||+.+++.+..+..++.. .+..++|+|+|+.+++++..++.|.+||+.+++.+..+..++    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            47899999999999999999998888765322 488999999998556677778999999999998887776333    2


Q ss_pred             cCeeEEEEecCCCEEEEEc------------CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          269 NAIISLHFFANEPVLMSAS------------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      ..+..++|+|+++++++++            .++.|.+||+...    +....... ...+.+++|+|++++++++  ++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~  154 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFEA-PRQITMLAWARDGSKLYGL--GR  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----cEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence            3688999999999888886            5799999988654    34444333 4568889999999988887  67


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .+.+||+.+++....+...                                                             
T Consensus       155 ~i~~~d~~~~~~~~~~~~~-------------------------------------------------------------  173 (337)
T 1pby_B          155 DLHVMDPEAGTLVEDKPIQ-------------------------------------------------------------  173 (337)
T ss_dssp             SEEEEETTTTEEEEEECST-------------------------------------------------------------
T ss_pred             eEEEEECCCCcEeeeeecc-------------------------------------------------------------
Confidence            8999998765433222110                                                             


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE--EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIE--RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~--i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (764)
                           ....   .+.++|+|+.+++....+...  +|...                           ....+..... ..
T Consensus       174 -----~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~-~~  217 (337)
T 1pby_B          174 -----SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTA---------------------------RKDIDPADPT-AY  217 (337)
T ss_dssp             -----TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEE---------------------------BTTSCTTSGG-GE
T ss_pred             -----ccCC---CceeCCCccEEeeeccCCCceeeeeecc---------------------------cccccccccc-cc
Confidence                 0001   115677777666554433221  11111                           0000000000 11


Q ss_pred             CCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270          495 HGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  571 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~  571 (764)
                      ...|.+||..+++.. .+.   ....+..++|+|++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|||++
T Consensus       218 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  293 (337)
T 1pby_B          218 RTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred             ccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence            126899999988775 332   22567889999999999988  799999999999988887744 46789999999999


Q ss_pred             EEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          572 LLSSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       572 l~s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                      |++++.++.|++||+.+++.+..+..+.
T Consensus       294 l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          294 VWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            9999999999999999999998887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.4e-22  Score=203.91  Aligned_cols=253  Identities=9%  Similarity=-0.005  Sum_probs=192.4

Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-CCCCceeeEeccCC-CCCCeeE
Q 004270          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-TDGDPRLLRFRSGH-SAPPLCI  320 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~~~~~h-~~~v~~i  320 (764)
                      ++.++.|++||+.+++.....  .|...|.+++|+|++++|++++ ++.|.+|+++. .    .......+| ...+.++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSCC
T ss_pred             CCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccce
Confidence            457899999999998877544  4889999999999999999987 78999999876 4    233333444 4678899


Q ss_pred             EEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          321 RFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       321 ~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +|+|++++|++++  .++...+|.+...                                                    
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~----------------------------------------------------  118 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPST----------------------------------------------------  118 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETT----------------------------------------------------
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECC----------------------------------------------------
Confidence            9999999999988  3355666654311                                                    


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                                                              ++.. ..+         .+...+.
T Consensus       119 --------------------------------------------------------~~~~-~~~---------~~~~~~~  132 (297)
T 2ojh_A          119 --------------------------------------------------------GGTP-RLM---------TKNLPSY  132 (297)
T ss_dssp             --------------------------------------------------------CCCC-EEC---------CSSSSEE
T ss_pred             --------------------------------------------------------CCce-EEe---------ecCCCcc
Confidence                                                                    1110 001         1222377


Q ss_pred             EEEECCCCCEEE-EEeCCCeEEEEEC--CCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEcc-CCeEEEEe
Q 004270          479 GVACDSTNTLMI-SAGYHGDIKVWDF--KGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVV-ALRMVRKF  553 (764)
Q Consensus       479 ~l~~~~~~~~l~-s~~~dg~v~iwd~--~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~-~~~~~~~~  553 (764)
                      .++|+|+++.++ +++.++.+++|++  .+++......+...+.+++|+|+++++++++ .++.+++|++. .+..+..+
T Consensus       133 ~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          133 WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             ceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence            788999998777 6778888888885  4455544445557899999999999888776 58999999986 56677888


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeCC-----------CcEEEEEcCccceEEEE--ee-CCceEEEEEcCCCCeEEEEEeC
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAI--HV-DVSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~d-----------g~i~iwd~~~~~~~~~~--~~-~~~v~~l~~sp~g~~lat~~~d  619 (764)
                      ..|...+..++|+|||++|++++.+           +.|++||+.+++.....  .. ...+.+++|+|+|++|++++.+
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            8888889999999999999988765           56999999988764433  23 3469999999999999999887


Q ss_pred             C
Q 004270          620 Q  620 (764)
Q Consensus       620 ~  620 (764)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=8.5e-23  Score=232.71  Aligned_cols=369  Identities=10%  Similarity=-0.005  Sum_probs=246.1

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCCCCEEEEEEc---------CCeEEEE
Q 004270          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPALDVVAVGCS---------DGKIHVH  208 (764)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~~~~la~g~~---------dg~i~iw  208 (764)
                      ....|+|++  + ++..+.++.|++||+.+++....+.+|..   .+.+++|||||++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg--~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQ--E-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSS--E-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCC--e-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            467899998  4 44455799999999999998887776543   4899999999999999876         6899999


Q ss_pred             EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----------------
Q 004270          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----------------  271 (764)
Q Consensus       209 d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-----------------  271 (764)
                      |+.+++.+.....  ...+.+++|||||+ .|+.+. ++.|++||+.+++.......++...|                 
T Consensus        96 d~~~g~~~~~~~l--~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           96 DLSNGEFVRGNEL--PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             ETTTTEECCSSCC--CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             ECCCCccccceec--CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            9998876211111  24688999999999 666665 78999999998876554433433322                 


Q ss_pred             eEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-
Q 004270          272 ISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-  349 (764)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-  349 (764)
                      .+++|+|||+.|++++.| +.+.+|.+.....         .+...+..+.|...|..    .....+++||+.++... 
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~yp~~g~~----~~~~~l~~~d~~~~~~~~  238 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD---------EQYPRTINIPYPKAGAK----NPVVRIFIIDTTYPAYVG  238 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCS---------SSSCEEEEEECCBTTSC----CCEEEEEEEESSCHHHHC
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCC---------CCCccceeecCCCCCCC----CCeeEEEEEECCCCCccc
Confidence            489999999999988765 5566665533211         12233444555444321    12346788887654321 


Q ss_pred             -ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270          350 -RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (764)
Q Consensus       350 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (764)
                       ..+...                                                              .....+...+.
T Consensus       239 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  256 (719)
T 1z68_A          239 PQEVPVP--------------------------------------------------------------AMIASSDYYFS  256 (719)
T ss_dssp             CEECCCC--------------------------------------------------------------HHHHTSCEEEE
T ss_pred             eeEccCC--------------------------------------------------------------ccCCCCcceEE
Confidence             000000                                                              00012346788


Q ss_pred             EEEEccCCCEEEEEecCC----cEEEEE----CcCCcccceecCccccccccccCcEE-----EEEECCCCCEEEE--Ee
Q 004270          429 ACTISACGNFAVLGTAGG----WIERFN----LQSGISRGSYLDMSERSNYAHNGEVV-----GVACDSTNTLMIS--AG  493 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~g----~i~i~~----~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~l~s--~~  493 (764)
                      .++|+||++++++....+    .|.+||    ..++.....+..    ....|...+.     .++|+|+|+.++.  +.
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH----IEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE----EEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec----ccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            999999988777754432    488899    777765544310    0014555565     7899999986654  44


Q ss_pred             CCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-----CeEEEEEccC--Ce-EEEEee----cCCCC
Q 004270          494 YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVA--LR-MVRKFE----GHTDR  559 (764)
Q Consensus       494 ~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~--~~-~~~~~~----~h~~~  559 (764)
                      .+|  .|.+||+.+++..........+..+.++ +++.++..+.+     +..++|.+..  +. ....+.    +|...
T Consensus       333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~  411 (719)
T 1z68_A          333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ  411 (719)
T ss_dssp             TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC
T ss_pred             cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc
Confidence            555  5777787777643333334567777777 88888777665     7888888764  32 234443    26667


Q ss_pred             eeEEEEcCCCcEEEE-EeCC--CcEEEEEcCccceEEEEe
Q 004270          560 ITDFCFSEDGKWLLS-SGMD--GSLRIWDVILARQIDAIH  596 (764)
Q Consensus       560 i~~l~~s~dg~~l~s-~s~d--g~i~iwd~~~~~~~~~~~  596 (764)
                      +..+.|+|||++++. ++.+  ..+.+||+.+++.+..+.
T Consensus       412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          412 YYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             BEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            889999999988774 3333  478999998888665554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2.1e-22  Score=202.50  Aligned_cols=256  Identities=14%  Similarity=0.191  Sum_probs=192.2

Q ss_pred             EEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEe
Q 004270          199 GCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFF  277 (764)
Q Consensus       199 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~  277 (764)
                      ++.++.|++||+.+++...... + ...|.+++|+|+|+ +|++++ ++.|++||+.+ ++........+...+.+++|+
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQ-T-PELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEE-E-SSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCcceeEEEEeCCCCceeeecc-C-CcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            4568999999999888765443 3 67899999999999 777776 78999999999 877666652234788999999


Q ss_pred             cCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccc
Q 004270          278 ANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQ  354 (764)
Q Consensus       278 ~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~  354 (764)
                      |++++|++++  .++..++|.++...+..   ..+..+ ..+..++|+|++++|+ +++.++.+++|++....       
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~-------  162 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS-------  162 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-------
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC-------
Confidence            9999999998  45678888887654432   222223 3488889999998877 67778888888764211       


Q ss_pred             hhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc
Q 004270          355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA  434 (764)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  434 (764)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (297)
T 2ojh_A          163 --------------------------------------------------------------------------------  162 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECC-CCCeeeeE
Q 004270          435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK-GRDLKSRW  512 (764)
Q Consensus       435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~-~~~~~~~~  512 (764)
                                           +.. ..+        ..|...+.+++|+|+++.++.++ .++.+++|++. .+.....+
T Consensus       163 ---------------------~~~-~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          163 ---------------------GVE-TRL--------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             ---------------------CCE-EEC--------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             ---------------------Ccc-eEc--------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence                                 000 000        14566788889999998777666 58888888875 34444444


Q ss_pred             e-cCcceEEEEEeecCCEEEEEeCC-----------CeEEEEEccCCeE--EEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270          513 E-VGCSLVKIVYHRVNGLLATVADD-----------LVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (764)
Q Consensus       513 ~-~~~~i~~~~~s~~~~~la~~~~d-----------~~i~v~d~~~~~~--~~~~~~h~~~i~~l~~s~dg~~l~s~s~d  578 (764)
                      . +...+..++|+|++++|++++.+           +.|++||+.+++.  +..+.+|...+..++|+|||++|++++.|
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            3 34678899999999999988765           5699999998865  44555888999999999999999988765


Q ss_pred             C
Q 004270          579 G  579 (764)
Q Consensus       579 g  579 (764)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=2.2e-21  Score=200.25  Aligned_cols=303  Identities=11%  Similarity=0.069  Sum_probs=208.5

Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  265 (764)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|+.+++++..++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            35678888999999999999999999999888887653236789999999984556666789999999999988877763


Q ss_pred             cc-----ccCeeEEEEecCCCEEEEEcCC------------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          266 AH-----DNAIISLHFFANEPVLMSASAD------------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       266 ~h-----~~~v~~l~~~~~~~~l~s~~~d------------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      .+     ...+..++|+|++++|++++.+            +.|.+||+...... ..+.... +...+.+++|+|+|+ 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-ceeeecc-CCCcccceeECCCCc-
Confidence            33     3348899999999999998865            89999998763211 2222222 334688999999999 


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      +++++.  .+.+||+.+++....+.......          ....++            +            .+.+|...
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~----------~~~~~~------------~------------~~~~~~~~  204 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNR----------KGYSAP------------D------------VLYFWPHQ  204 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCC----------TTBCCC------------B------------CCCCCCCC
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCC----------ccccCc------------c------------ceeeecCC
Confidence            666543  49999987765444332110000          000000            0            00000000


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCC-----------EEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGN-----------FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----------~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                      ..          .........+++++++.           ++.....++.+.+++..                 .+...+
T Consensus       205 ~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  257 (349)
T 1jmx_B          205 SP----------RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------------DLTELY  257 (349)
T ss_dssp             CT----------TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------------ECSSCE
T ss_pred             Cc----------ceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------------cCCCcc
Confidence            00          00001233455554432           12233334444444432                 345678


Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270          478 VGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       478 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      .+++++| ++++++++  ++.|.+||+.+++.+..+.....+.+++|+|++++|++++.++.|++||..+++.+..+..+
T Consensus       258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            8999999 99999888  89999999999999888888778889999999999998888999999999999998888754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.3e-20  Score=195.34  Aligned_cols=310  Identities=15%  Similarity=0.112  Sum_probs=208.0

Q ss_pred             EEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcCC----CcEEEEEecCCCCCceeeE
Q 004270          239 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWIFDTTDGDPRLLR  308 (764)
Q Consensus       239 ~l~sg~----~dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----~~i~vw~~~~~~~~~~~~~  308 (764)
                      .+++|+    .++.|.+|++  .+++....... +...+..++|+|++++|++++.+    +.+.+|+++...+..+.+.
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            566664    3567888866  55665544442 67788899999999999998876    7999999987655445555


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          309 FRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      ....+...+..+++  +++++++++ .++.+.+|++........+...                                
T Consensus        94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~--------------------------------  139 (361)
T 3scy_A           94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV--------------------------------  139 (361)
T ss_dssp             EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE--------------------------------
T ss_pred             EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee--------------------------------
Confidence            55556667777887  888887776 5789999998754332221100                                


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcc------cc
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGIS------RG  460 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~------~~  460 (764)
                                       ....     .....+.......+.+++++|+|++++++. .++.|.+|++.....      ..
T Consensus       140 -----------------~~~~-----g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~  197 (361)
T 3scy_A          140 -----------------IEFK-----GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL  197 (361)
T ss_dssp             -----------------EECC-----CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred             -----------------EEcc-----CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence                             0000     000001112235678899999999776665 478999998875442      11


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeee--EecC----cceEEEEEeecCCEEEEE
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR--WEVG----CSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~--~~~~----~~i~~~~~s~~~~~la~~  533 (764)
                      .... .......+...+..++|+|+|+++++++ .++.|.+|++.+++....  +...    .....++|+|||++|+++
T Consensus       198 ~~~~-~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          198 TKGT-PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             EEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred             eccc-ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence            0000 0000024455678999999999887777 689999999987754322  2211    346799999999998777


Q ss_pred             eCC--CeEEEEEcc--CCe--EEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEE--cCccceEEEEe--eCCceE
Q 004270          534 ADD--LVIRLFDVV--ALR--MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWD--VILARQIDAIH--VDVSIT  602 (764)
Q Consensus       534 ~~d--~~i~v~d~~--~~~--~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd--~~~~~~~~~~~--~~~~v~  602 (764)
                      ..+  +.|.+|++.  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|+  ..+|++.....  .-..+.
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~  355 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV  355 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence            654  899999995  444  4555554 55788999999999998887 678999964  45676654321  122488


Q ss_pred             EEEEc
Q 004270          603 ALSLS  607 (764)
Q Consensus       603 ~l~~s  607 (764)
                      |+.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=228.13  Aligned_cols=356  Identities=10%  Similarity=-0.007  Sum_probs=234.9

Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC---CEEEEEEeeCCCCEEEEEeC---------CCcEEEEE
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGAS---------SGVISIWN  253 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~fs~d~~~~l~sg~~---------dg~i~iwd  253 (764)
                      .++|+|+++++++ +.|+.|++||+.+++....+..+ ..   .+.+++|||||+ .|++++.         ++.|++||
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNR-TMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHH-HHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccc-cccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEE
Confidence            6799999965554 46899999999999877666543 22   489999999999 7777765         68999999


Q ss_pred             CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-----------------C
Q 004270          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-----------------P  316 (764)
Q Consensus       254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-----------------~  316 (764)
                      +.+++.+....  ....+..++|+|||+.|+++. ++.|++|++.....  ..+ ...++..                 .
T Consensus        97 ~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~--~~l-~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           97 LSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP--FQI-TFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             TTTTEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC--EEC-CCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             CCCCcccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc--EEE-ecCCCcCCeEcccccceeeeecccC
Confidence            99998732111  125688999999999999886 78999998765431  111 1122222                 2


Q ss_pred             CeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270          317 PLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (764)
Q Consensus       317 v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (764)
                      ..+++|+|||++|++++.| +.+.+|.+......                                              
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~----------------------------------------------  204 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE----------------------------------------------  204 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS----------------------------------------------
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCC----------------------------------------------
Confidence            2589999999999998765 45566654321100                                              


Q ss_pred             eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                                                 .......+.+...|..    .....|.+||+.++...............+|..
T Consensus       205 ---------------------------~~~~~~~~~yp~~g~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          205 ---------------------------QYPRTINIPYPKAGAK----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             ---------------------------SSCEEEEEECCBTTSC----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             ---------------------------CCccceeecCCCCCCC----CCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence                                       0012222333222220    122378899998876531111000011136888


Q ss_pred             cEEEEEECCCCCEEEEEeCC----CeEEEEE----CCCCCeeeeEe----c-CcceE-----EEEEeecCCEEEE--EeC
Q 004270          476 EVVGVACDSTNTLMISAGYH----GDIKVWD----FKGRDLKSRWE----V-GCSLV-----KIVYHRVNGLLAT--VAD  535 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~d----g~v~iwd----~~~~~~~~~~~----~-~~~i~-----~~~~s~~~~~la~--~~~  535 (764)
                      .+..++|+||++++++....    ..|.+||    ..+++....+.    . ...+.     .+.|+|||+.++.  ...
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            89999999998877764432    3488899    77777665552    2 24455     7899999996655  334


Q ss_pred             CC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-----CcEEEEEcCc--cc-eEEEEee----C-Cc
Q 004270          536 DL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIWDVIL--AR-QIDAIHV----D-VS  600 (764)
Q Consensus       536 d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-----g~i~iwd~~~--~~-~~~~~~~----~-~~  600 (764)
                      ++  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.+++|.+..  +. ....+..    + ..
T Consensus       334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~  411 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ  411 (719)
T ss_dssp             TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC
T ss_pred             CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc
Confidence            55  57777877766 45666666778888888 88887766654     7889998764  42 1233331    2 34


Q ss_pred             eEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270          601 ITALSLSPNMDVLATAHVDQ--NGVYLWVNR  629 (764)
Q Consensus       601 v~~l~~sp~g~~lat~~~d~--~~i~lW~~~  629 (764)
                      +..+.|+|||++++..+.+.  ..+++|+..
T Consensus       412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          412 YYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             BEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             eEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            78899999999888654322  357888763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=3.2e-20  Score=192.47  Aligned_cols=281  Identities=14%  Similarity=0.143  Sum_probs=195.4

Q ss_pred             CEEEEE----cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC----CcEEEEEeecc-ccccc
Q 004270          281 PVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQD-QQSRE  351 (764)
Q Consensus       281 ~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~i~i~d~~~~-~~~~~  351 (764)
                      .+++.|    +.++.|.+|.++...+....+...  +...+..++|+|||++|++++.+    +.+.+|++... .....
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            345555    346789999998876665555554  77888999999999999999886    78999998653 11111


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                      +..                                                                 ...+......++
T Consensus        92 ~~~-----------------------------------------------------------------~~~~~~~p~~~~  106 (361)
T 3scy_A           92 LNT-----------------------------------------------------------------QKTMGADPCYLT  106 (361)
T ss_dssp             EEE-----------------------------------------------------------------EECSSSCEEEEE
T ss_pred             eeE-----------------------------------------------------------------eccCCCCcEEEE
Confidence            000                                                                 001124556667


Q ss_pred             EccCCCEEEEEe-cCCcEEEEECcCCcccceecC------ccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 004270          432 ISACGNFAVLGT-AGGWIERFNLQSGISRGSYLD------MSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF  503 (764)
Q Consensus       432 ~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~  503 (764)
                      +  +|++++++. .++.+.+|++...........      ........+...+.+++|+|+|+++++++ .++.|++|++
T Consensus       107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  184 (361)
T 3scy_A          107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI  184 (361)
T ss_dssp             E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             E--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            6  888777766 578999999975443322210      00000112344578899999999776655 5889999998


Q ss_pred             CCCC-------e-------eeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeE--EEEee---cCCCCeeEE
Q 004270          504 KGRD-------L-------KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--VRKFE---GHTDRITDF  563 (764)
Q Consensus       504 ~~~~-------~-------~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~--~~~~~---~h~~~i~~l  563 (764)
                      ....       +       .........+..++|+|||+++++++ .++.|.+||+.+++.  +..+.   .+......+
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i  264 (361)
T 3scy_A          185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI  264 (361)
T ss_dssp             CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred             cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence            7543       2       11223346778999999999888877 689999999997754  33332   334557899


Q ss_pred             EEcCCCcEEEEEeC--CCcEEEEEcC--ccc--eEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          564 CFSEDGKWLLSSGM--DGSLRIWDVI--LAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       564 ~~s~dg~~l~s~s~--dg~i~iwd~~--~~~--~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      +|+|||++|+++..  ++.|.+|++.  +++  .+..+.....+.+++|+|||++|++++.+...|.+|+++.
T Consensus       265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            99999999976665  4899999995  455  4455555446899999999999999986655799987753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=9.5e-21  Score=215.54  Aligned_cols=369  Identities=8%  Similarity=0.035  Sum_probs=245.2

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-----eEEEEEcCCCCEEEEEEcC---------CeE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-----ISSCVSSPALDVVAVGCSD---------GKI  205 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----i~~~~~sp~~~~la~g~~d---------g~i  205 (764)
                      ...+.|+|++  +.++++  +|+|++||+.+++....+.+|...     ...++|||||++|+.++.+         +.+
T Consensus        19 ~~~~~w~~dg--~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           19 LYSLRWISDH--EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCEEECSSS--EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccEECCCC--cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            4467899999  667765  899999999999998888887643     2347899999999998876         567


Q ss_pred             EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe--------------
Q 004270          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI--------------  271 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v--------------  271 (764)
                      .+||+.+++... +.. +.+.+...+|||||+ .||.+. ++.|++||+.+++.......++...+              
T Consensus        95 ~~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EER-IPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTEECC-SSC-CCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCcEEE-ccc-CCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            799999987543 333 357899999999999 666664 68999999988875543332333222              


Q ss_pred             ---eEEEEecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec--
Q 004270          272 ---ISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ--  345 (764)
Q Consensus       272 ---~~l~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~--  345 (764)
                         ..+.|+|||+.|+.++.|.+ +++|++.......       ++...+..+.|...|..    .....|++||+.+  
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLS  239 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCC
Confidence               35899999999998876654 8888775432210       24444556666665532    1122578888765  


Q ss_pred             -ccc--cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270          346 -DQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (764)
Q Consensus       346 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (764)
                       +..  ...+.....                                                              ..+
T Consensus       240 ~~~~~~~~~l~~~~~--------------------------------------------------------------~~~  257 (740)
T 4a5s_A          240 SVTNATSIQITAPAS--------------------------------------------------------------MLI  257 (740)
T ss_dssp             SSSCCCEEEECCCHH--------------------------------------------------------------HHT
T ss_pred             CCCcceEEEecCCcc--------------------------------------------------------------CCC
Confidence             421  111100000                                                              002


Q ss_pred             CCCCeEEEEEccCCCEEEEEecC----CcEEEEECcCCc----cc--ceecCccccccccccCcEE-----EEEECCCCC
Q 004270          423 NPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGI----SR--GSYLDMSERSNYAHNGEVV-----GVACDSTNT  487 (764)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~-----~l~~~~~~~  487 (764)
                      +...+..++|+|||+.++.....    ..|.+||+.++.    ..  ..+.      ...|...|.     .++|+|||+
T Consensus       258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------EMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------EECSSSCSSSSSCCCCEECTTSS
T ss_pred             CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------eccCCceEccCcCCCceEcCCCC
Confidence            34668899999999977765443    379999999887    11  1110      013444443     688999999


Q ss_pred             EEE-EEeC-C--CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-----C--eEEEEEccCCeEEEEeec-
Q 004270          488 LMI-SAGY-H--GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-----L--VIRLFDVVALRMVRKFEG-  555 (764)
Q Consensus       488 ~l~-s~~~-d--g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~--~i~v~d~~~~~~~~~~~~-  555 (764)
                      .++ ..+. +  ..|.+||..+++..........+..+. .+|++.++..+..     +  .|+..++..++....+.. 
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~  410 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE  410 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence            877 6653 3  468889998877666555555665544 3557766655543     3  455555555544334542 


Q ss_pred             ---CCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEe
Q 004270          556 ---HTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIH  596 (764)
Q Consensus       556 ---h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~  596 (764)
                         .......+.|||||++++.....   ..+.+++..+++.+..+.
T Consensus       411 ~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence               23568899999999987755433   468888988887666554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=1e-21  Score=217.77  Aligned_cols=272  Identities=12%  Similarity=0.114  Sum_probs=206.2

Q ss_pred             ccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeC---CCcEEE
Q 004270          266 AHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQ---DRAFRL  340 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~---dg~i~i  340 (764)
                      .+..+|.+++|+|||+.|++++. ||++++|+++..    ...+ +..|. ..+..++|+|| +.+++++.   +...++
T Consensus        19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----ETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----EEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred             HhccchheeecCCCCCeEEEEEccCCceeEEEEcCC----CcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence            34668999999999999999887 999999998543    3333 33444 68899999999 77777765   455677


Q ss_pred             EEeec--ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270          341 FSVIQ--DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (764)
Q Consensus       341 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (764)
                      |.+..  ......+                                                                 .
T Consensus        93 ~~~~~~~~g~~~~l-----------------------------------------------------------------~  107 (582)
T 3o4h_A           93 FKVNTSRPGEEQRL-----------------------------------------------------------------E  107 (582)
T ss_dssp             EEEETTSTTCCEEC-----------------------------------------------------------------T
T ss_pred             EEEeccCCCccccc-----------------------------------------------------------------c
Confidence            76543  2111110                                                                 0


Q ss_pred             CCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC--
Q 004270          419 PCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--  495 (764)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~-l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--  495 (764)
                          ........+++|+|+. +++...++.+.+||+.++......         .+..  .+++|+|||+++++++.+  
T Consensus       108 ----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---------~~~~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A          108 ----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA---------RLPG--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             ----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE---------EESS--CEEEEEEETTEEEEEEEEET
T ss_pred             ----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee---------cCCC--ceEEECCCCCEEEEEEEcCC
Confidence                0123446688888864 344445556669999988665443         2222  789999999999988877  


Q ss_pred             --CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC--eEEEEEccCCeEEEEeecCCCCeeEEE-------
Q 004270          496 --GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFC-------  564 (764)
Q Consensus       496 --g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~-------  564 (764)
                        +.|++||+.+++......+...+..++|||||+.|+++..++  .|++||+.+++.. .+.+|...+..++       
T Consensus       173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence              789999999988775555557789999999999999888888  8999999999888 8888888888888       


Q ss_pred             -EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC--eEEEEecc
Q 004270          565 -FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN--GVYLWVNR  629 (764)
Q Consensus       565 -~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~--~i~lW~~~  629 (764)
                       |||||+++++++.|+++++|++  |+...  .....+.+++|+ +|+++++++.+..  .+++|+..
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence             9999999999999999999999  76655  223458999999 9999999888763  25666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=3.1e-20  Score=191.34  Aligned_cols=284  Identities=11%  Similarity=0.103  Sum_probs=192.8

Q ss_pred             CCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          246 SGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       246 dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      ++.|.+|++  .+++........+...+..++|+|+++ |++++.   ++.|.+|+++..  ..+.+.....+...+..+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT--EEEEEEEEEEESCCCSEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC--cEEEeeeeecCCCCCEEE
Confidence            445666654  456654432225667788999999998 555544   689999998654  224455545678889999


Q ss_pred             EEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       321 ~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      +|+|+|++|++++ .++.+.+|++........+..                                             
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~---------------------------------------------  126 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT---------------------------------------------  126 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE---------------------------------------------
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce---------------------------------------------
Confidence            9999999998888 678999999863221111100                                             


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEE
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                           .....    ..  .........+.+++++|+|++++++..++.|.+|++. ++........     .......+.
T Consensus       127 -----~~~~~----~~--p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~~g~~p~  190 (347)
T 3hfq_A          127 -----VQHSG----HG--PRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL-----TMEAGFGPR  190 (347)
T ss_dssp             -----EECCC----CC--SSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE-----ECCTTCCEE
T ss_pred             -----eecCC----CC--CCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE-----EcCCCCCCc
Confidence                 00000    00  0001123568899999999966666678899999998 4433221100     012234678


Q ss_pred             EEEECCCCCEEEE-EeCCCeEEEEECCC--CCee--eeEecC-------cceEEEEEeecCCEEE-EEeCCCeEEEEEcc
Q 004270          479 GVACDSTNTLMIS-AGYHGDIKVWDFKG--RDLK--SRWEVG-------CSLVKIVYHRVNGLLA-TVADDLVIRLFDVV  545 (764)
Q Consensus       479 ~l~~~~~~~~l~s-~~~dg~v~iwd~~~--~~~~--~~~~~~-------~~i~~~~~s~~~~~la-~~~~d~~i~v~d~~  545 (764)
                      .++|+|+|+++++ ...++.|.+|++..  ++..  ..+...       ..+..++|+|||++|+ +...++.|.+|++.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999996665 45788999999874  4432  222211       3478899999999875 45568999999997


Q ss_pred             ---CCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEE--EcCccceEE
Q 004270          546 ---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIW--DVILARQID  593 (764)
Q Consensus       546 ---~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iw--d~~~~~~~~  593 (764)
                         +.+.+..+..+...+..++|+|||++|++++.+ +.|.+|  |..+|++..
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence               335666777777778999999999999888754 899999  556677653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=7.3e-21  Score=196.36  Aligned_cols=294  Identities=8%  Similarity=0.030  Sum_probs=198.3

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceee
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      .+++++++. ++++++.++.|.+||+.+++.+..+..+....+..++|+|+++.+ ++...++.|.+||+.+.    +..
T Consensus         4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~----~~~   78 (349)
T 1jmx_B            4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KNT   78 (349)
T ss_dssp             CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EEE
T ss_pred             cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----cEE
Confidence            356777777 899999999999999999998888773322368899999999865 45567899999988654    333


Q ss_pred             EeccC-C-----CCCCeeEEEecCCCEEEEEeCC------------CcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          308 RFRSG-H-----SAPPLCIRFYANGRHILSAGQD------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       308 ~~~~~-h-----~~~v~~i~~~~~~~~l~s~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      ..... +     ...+..++|+|+|+++++++.+            +.|.+||+.+++....+.                
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------------  142 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR----------------  142 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE----------------
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee----------------
Confidence            33332 2     2348899999999999998865            788888876543211110                


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                                                                    ..    .+...+.+++++|+|+ +++++  +.|.
T Consensus       143 ----------------------------------------------~~----~~~~~~~~~~~s~dg~-l~~~~--~~i~  169 (349)
T 1jmx_B          143 ----------------------------------------------TF----PMPRQVYLMRAADDGS-LYVAG--PDIY  169 (349)
T ss_dssp             ----------------------------------------------EE----ECCSSCCCEEECTTSC-EEEES--SSEE
T ss_pred             ----------------------------------------------ec----cCCCcccceeECCCCc-EEEcc--CcEE
Confidence                                                          00    0113577889999999 66653  4499


Q ss_pred             EEECcCCcccceecCcccccc-------------cc--c-cCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeee-
Q 004270          450 RFNLQSGISRGSYLDMSERSN-------------YA--H-NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR-  511 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~-------------~~--h-~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~-  511 (764)
                      +||+.+++....+........             ..  + .....++++++++....... ....+..++..+++.... 
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence            999999887665532100000             00  0 00344566766542211100 011122244444432111 


Q ss_pred             -EecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270          512 -WEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       512 -~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                       -.....+..++++| ++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.++
T Consensus       250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence             11345778999999 99999988  889999999999988887743 45789999999999998888999999999999


Q ss_pred             ceEEEEeeCC
Q 004270          590 RQIDAIHVDV  599 (764)
Q Consensus       590 ~~~~~~~~~~  599 (764)
                      +.+..+..+.
T Consensus       327 ~~~~~~~~~~  336 (349)
T 1jmx_B          327 EKVKNIKLPG  336 (349)
T ss_dssp             EEEEEEECSS
T ss_pred             ceeeeeecCC
Confidence            9998887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=7.8e-20  Score=188.38  Aligned_cols=288  Identities=9%  Similarity=0.070  Sum_probs=186.8

Q ss_pred             CEEEEEeC----CCcEEEEeC--CCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCce--EEEE
Q 004270          152 NKVIVGSQ----EGSLQLWNI--STKKKLY-EFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEE--LVTF  219 (764)
Q Consensus       152 ~~l~~~~~----dg~i~iwd~--~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~--~~~~  219 (764)
                      +++++|+.    ++.|.+|++  .+++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.+++.  +..+
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~   81 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV   81 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence            35666643    345666654  5676543 3334566778899999999 555544   68999999987763  3333


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCC-c--eeeeeeecc--------cccCeeEEEEecCCCEEEEEc
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEK-R--RLQSVIREA--------HDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~-~--~~~~~~~~~--------h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      ..+ ...+..++|+|||+ +|++++ .++.|.+|++.. +  +.+..+...        +...+.+++|+|+++++++..
T Consensus        82 ~~~-~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           82 VAP-GTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEE-SCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             ecC-CCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            333 56788999999999 666666 789999999963 3  223333211        122488899999999777777


Q ss_pred             CCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          288 ADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       288 ~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      .++.|.+|+++.. +.......... ....+..++|+|||++++++ ..++.+.+|++...........           
T Consensus       160 ~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-----------  227 (347)
T 3hfq_A          160 GSDKVYVYNVSDA-GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG-----------  227 (347)
T ss_dssp             TTTEEEEEEECTT-SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE-----------
T ss_pred             CCCEEEEEEECCC-CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee-----------
Confidence            7899999999732 22222222222 23467889999999976664 5678999999864211000000           


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE-Eec
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTA  444 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~  444 (764)
                                                              .       .............+..++|+|+|+++++ ...
T Consensus       228 ----------------------------------------~-------~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~  260 (347)
T 3hfq_A          228 ----------------------------------------I-------VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG  260 (347)
T ss_dssp             ----------------------------------------E-------EESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred             ----------------------------------------e-------eeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence                                                    0       0000000011245889999999998855 456


Q ss_pred             CCcEEEEECcCC---cccceecCccccccccccCcEEEEEECCCCCEEEEEeCC-CeEEEEEC--CCCCee
Q 004270          445 GGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GDIKVWDF--KGRDLK  509 (764)
Q Consensus       445 ~g~i~i~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~--~~~~~~  509 (764)
                      ++.|.+|++...   .....+        ..+...+.+++|+|++++|++++.+ +.|.+|++  .++++.
T Consensus       261 ~~~v~v~~~~~~g~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          261 YNTLAVFAVTADGHLTLIQQI--------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TTEEEEEEECGGGCEEEEEEE--------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCEEEEEEECCCCcEEEeEEE--------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            899999998732   222222        2455668899999999988888754 89999954  456544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=7.8e-21  Score=210.56  Aligned_cols=270  Identities=11%  Similarity=0.037  Sum_probs=199.5

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecC
Q 004270          224 RGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDT  299 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~  299 (764)
                      ..+|.+++|+|||+ .||.++. +|++.||++.+++...... .+...+..++|+|| +++++++.   +...++|.++.
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            45799999999999 7777665 9999999997766544433 34468999999999 77777765   56678888776


Q ss_pred             --CCCCceeeEeccCCCCCCeeEEEecCCCE-EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          300 --TDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       300 --~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                        .... ..   +. ....+...+|+|+|+. +++.+.++.+.+||+.+++......                       
T Consensus        98 ~~~g~~-~~---l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------------------  149 (582)
T 3o4h_A           98 SRPGEE-QR---LE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------------------  149 (582)
T ss_dssp             TSTTCC-EE---CT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred             cCCCcc-cc---cc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence              3222 21   11 2223446788888753 3344444556699987653221100                       


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEE
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFN  452 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~  452 (764)
                                                                    +..  .++++||||++++.++.+    +.|++||
T Consensus       150 ----------------------------------------------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d  181 (582)
T 3o4h_A          150 ----------------------------------------------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN  181 (582)
T ss_dssp             ----------------------------------------------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             ----------------------------------------------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence                                                          001  678999999999988777    7899999


Q ss_pred             CcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC--eEEEEECCCCCeeeeEecC-cceEEEE-------
Q 004270          453 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGRDLKSRWEVG-CSLVKIV-------  522 (764)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~-~~i~~~~-------  522 (764)
                      +.++.... +        ..|.+.+..++|+|||+.|+++..++  .|++||+.+++.. .+..+ ..+..++       
T Consensus       182 ~~~g~~~~-l--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          182 LSSGGLRV-F--------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TTTCCCEE-E--------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCCCCceE-e--------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence            99887653 3        27888899999999999999888888  8999999998877 44433 4455556       


Q ss_pred             -EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCc---EEEEEcCc
Q 004270          523 -YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVIL  588 (764)
Q Consensus       523 -~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~---i~iwd~~~  588 (764)
                       |+|||.++++++.++.+++|++  ++...   .+.+.|.+++|+ ||+++++++.+.+   +.+||..+
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence             9999999999999999999999  66554   345678999999 9999998887754   66777553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=7.3e-20  Score=208.26  Aligned_cols=360  Identities=12%  Similarity=0.050  Sum_probs=231.6

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC----CEEEEEEeeCCCCEEEEEeCC---------Cc
Q 004270          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----AVTALAFSSDGQPLLASGASS---------GV  248 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~l~fs~d~~~~l~sg~~d---------g~  248 (764)
                      ....++.|+|++++++++  ||.|++||+.+++....+..+...    ....++|||||+ .|+.++.+         +.
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceE
Confidence            345688999999999886  899999999999987766654222    224488999999 77777654         66


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-------------
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-------------  315 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-------------  315 (764)
                      +.+||+.+++... +. .|.+.+...+|||||+.|+.+. |+.|.+|+.....  ...+ ...++..             
T Consensus        94 ~~~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~--~~~l-t~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           94 YDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP--SYRI-TWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC--CEEC-CSCCBTTTEEESBCCHHHHH
T ss_pred             EEEEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc--eEEE-cCCCCccceecCcccccccc
Confidence            7899999998654 33 5778899999999999999885 6889999876542  1211 1122222             


Q ss_pred             ----CCeeEEEecCCCEEEEEeCCCc-EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          316 ----PPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       316 ----~v~~i~~~~~~~~l~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                          ....+.|+|||+.|+.++.|.+ +.+|++.......                                        
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----------------------------------------  207 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----------------------------------------  207 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT----------------------------------------
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC----------------------------------------
Confidence                2245899999999998876544 8888764321100                                        


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC---Ccc--cceecCc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS---GIS--RGSYLDM  465 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~~~--~~~~~~~  465 (764)
                                                     .+......+.+.+.|..    .....|++||+.+   +..  ...+.. 
T Consensus       208 -------------------------------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~-  251 (740)
T 4a5s_A          208 -------------------------------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITA-  251 (740)
T ss_dssp             -------------------------------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECC-
T ss_pred             -------------------------------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecC-
Confidence                                           01123344444444432    1122688899988   732  122210 


Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCC----ee--eeE--e-cCcce-----EEEEEeecC
Q 004270          466 SERSNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRD----LK--SRW--E-VGCSL-----VKIVYHRVN  527 (764)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~----~~--~~~--~-~~~~i-----~~~~~s~~~  527 (764)
                       .....+|...+..++|+|||+.++....    +..|++||+.+++    +.  ..+  . +...+     ...+|+|||
T Consensus       252 -~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 -PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             -CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             -CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence             0001137788999999999997665542    3479999999887    22  221  2 22333     378899999


Q ss_pred             CEEE-EEeC-C--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-----C--cEEEEEcCccceEEEEe
Q 004270          528 GLLA-TVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----G--SLRIWDVILARQIDAIH  596 (764)
Q Consensus       528 ~~la-~~~~-d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-----g--~i~iwd~~~~~~~~~~~  596 (764)
                      +.++ ..+. +  ..|++||..+++.. .+......|..+.. +|++.|+..+..     +  .|+..++..+.....+.
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt  408 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS  408 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence            9887 6654 3  46888898877655 44434555666542 446665544432     2  45555555444333343


Q ss_pred             eC-----CceEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270          597 VD-----VSITALSLSPNMDVLATAHVDQ--NGVYLWVNR  629 (764)
Q Consensus       597 ~~-----~~v~~l~~sp~g~~lat~~~d~--~~i~lW~~~  629 (764)
                      ..     .....++|||+|++++......  ..+++++..
T Consensus       409 ~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~  448 (740)
T 4a5s_A          409 CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (740)
T ss_dssp             TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence            21     3488999999999887766542  135666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=7.2e-20  Score=191.96  Aligned_cols=300  Identities=10%  Similarity=0.026  Sum_probs=201.2

Q ss_pred             EEEECCCceeeeeeecccccCeeE-----EEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIIS-----LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      ..+|..++.....+. .|......     .+|+|||+.|+.++. ++...+|.++...+  .......++...+..+.|+
T Consensus        13 ~~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~s   89 (388)
T 3pe7_A           13 TYQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLS   89 (388)
T ss_dssp             EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEEC
T ss_pred             EEecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEc
Confidence            345777777777776 56555555     789999999998887 77644444443333  3444445666666678899


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      |||+.|+.++.++.+++||+.+++.......                                                 
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-------------------------------------------------  120 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLATLEENVVYQV-------------------------------------------------  120 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEEC-------------------------------------------------
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeeeec-------------------------------------------------
Confidence            9999999999999999999876543221100                                                 


Q ss_pred             EEEccceeecceeecCCCCCCCCeE--EEEEccCCCEEEEE----------------------ecCCcEEEEECcCCccc
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVK--ACTISACGNFAVLG----------------------TAGGWIERFNLQSGISR  459 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~g----------------------~~~g~i~i~~~~~~~~~  459 (764)
                                         +...+.  ...++++|++++..                      ..++.|.+||+.+++..
T Consensus       121 -------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          121 -------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             -------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             -------------------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence                               001121  22347777777642                      23468999999988654


Q ss_pred             ceecCccccccccccCcEEEEEECC-CCCEEEEEeCC------CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEE
Q 004270          460 GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLL  530 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~l  530 (764)
                      ...         .+...+..++|+| +|+.|+.+..+      ..|.++|..+++........  ..+...+|+|||+.|
T Consensus       182 ~l~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          182 VIL---------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             EEE---------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCE
T ss_pred             Eee---------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEE
Confidence            433         5666789999999 99988877753      37888888776654444433  357788999999988


Q ss_pred             EEEeC-CC----eEEEEEccCCeE--EEEeecCCC---CeeEEEEcCCCcEEEEE---------eCCCcEEEEEcCccce
Q 004270          531 ATVAD-DL----VIRLFDVVALRM--VRKFEGHTD---RITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQ  591 (764)
Q Consensus       531 a~~~~-d~----~i~v~d~~~~~~--~~~~~~h~~---~i~~l~~s~dg~~l~s~---------s~dg~i~iwd~~~~~~  591 (764)
                      +..+. ++    .|++||+.+++.  +..+.++..   ....++|+|||++|+..         ..+..|++||+.+++.
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            66543 22    399999998874  333333110   02234799999988854         4567899999998876


Q ss_pred             EEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          592 IDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       592 ~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ........           .+.+++|+|||+.|+.++.......||.++
T Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          333 HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            54444433           478899999999999887644346666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=5.9e-19  Score=181.60  Aligned_cols=284  Identities=11%  Similarity=0.169  Sum_probs=196.1

Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCceeeEeccC--
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG--  312 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~--  312 (764)
                      .|+.|.+||..+++.+..+. .+..+  .++|+||++++++++          .+++|.+||..+.    +.+..+..  
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~----~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL----TFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC----CEEEEEEECT
T ss_pred             ccCeEEEEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC----cEEEEEEcCc
Confidence            36799999999999988887 45444  899999999998886          3677999987654    23333221  


Q ss_pred             ----CCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeeccccccc-ccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270          313 ----HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (764)
Q Consensus       313 ----h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (764)
                          +...+..++++|||++|+++..  +++|.+||+.+.+.... +..                               
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-------------------------------  150 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-------------------------------  150 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-------------------------------
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-------------------------------
Confidence                3456789999999999998864  57899999877654433 211                               


Q ss_pred             cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcC-Ccccceec
Q 004270          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS-GISRGSYL  463 (764)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~-~~~~~~~~  463 (764)
                                                             .....+.+.|++ ..+++.+.+|.+..++... ++......
T Consensus       151 ---------------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~  191 (361)
T 2oiz_A          151 ---------------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR  191 (361)
T ss_dssp             ---------------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred             ---------------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence                                                   111113344544 4555666667666666643 33221100


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee--eeEecC-----------cceEEEEEeecCCEE
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEVG-----------CSLVKIVYHRVNGLL  530 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~-----------~~i~~~~~s~~~~~l  530 (764)
                      .  ......+... ..+.+++++..++..+.++.|.++|+......  ..+...           .....++++|+++.+
T Consensus       192 ~--~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l  268 (361)
T 2oiz_A          192 S--KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM  268 (361)
T ss_dssp             C--CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred             c--cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence            0  0000011111 12333566777777888999999999765422  222110           112237899998888


Q ss_pred             EEEeC-----------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--ceEEEE-e
Q 004270          531 ATVAD-----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQIDAI-H  596 (764)
Q Consensus       531 a~~~~-----------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~--~~~~~~-~  596 (764)
                      +++..           .+.|.+||+.+++.+.++..+.  +..++|+|||++|++++. ++|.+||..++  +.+..+ .
T Consensus       269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~  345 (361)
T 2oiz_A          269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG  345 (361)
T ss_dssp             EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred             EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence            77653           3489999999999999999887  999999999999998886 99999999999  999887 4


Q ss_pred             eCCceEEEEEcCCCC
Q 004270          597 VDVSITALSLSPNMD  611 (764)
Q Consensus       597 ~~~~v~~l~~sp~g~  611 (764)
                      .......++++|+|.
T Consensus       346 ~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          346 AAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEecCCCC
Confidence            555689999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.3e-19  Score=189.92  Aligned_cols=301  Identities=9%  Similarity=-0.034  Sum_probs=197.6

Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEE-----EEEcCCCCEEEEEEc-CC--eEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270          164 QLWNISTKKKLYEFKGWGSSISS-----CVSSPALDVVAVGCS-DG--KIHVHNVRYDEELVTFTHSMRGAVTALAFSSD  235 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~-----~~~sp~~~~la~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (764)
                      ..+|..++..+..+..|......     .+|||||++|+.++. +|  .|.+||+.+++....... +...+..++|+||
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spd   91 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPD   91 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTT
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCC
Confidence            34577888888889888766666     889999999999887 66  488889988776554433 3444556789999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE--EecCCCEEEEE----------------------cCCCc
Q 004270          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH--FFANEPVLMSA----------------------SADNS  291 (764)
Q Consensus       236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~s~----------------------~~d~~  291 (764)
                      |+ .|+.++.++.|++||+.+++...... .+...+....  ++|++..++..                      +.+..
T Consensus        92 g~-~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           92 DD-ALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             SS-EEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             CC-EEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            99 88888888999999999998766665 4555454444  48899888743                      23456


Q ss_pred             EEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  370 (764)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (764)
                      |.+||+.+.  ..+   .+..+...+..++|+| ||+.|+....++.    +                            
T Consensus       170 l~~~d~~~g--~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~----~----------------------------  212 (388)
T 3pe7_A          170 LMRVDLKTG--EST---VILQENQWLGHPIYRPYDDSTVAFCHEGPH----D----------------------------  212 (388)
T ss_dssp             EEEEETTTC--CEE---EEEEESSCEEEEEEETTEEEEEEEEECSCT----T----------------------------
T ss_pred             EEEEECCCC--ceE---EeecCCccccccEECCCCCCEEEEEEecCC----C----------------------------
Confidence            777766554  222   2234566788999999 9998887765320    0                            


Q ss_pred             hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  450 (764)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i  450 (764)
                                                                                              .....|.+
T Consensus       213 ------------------------------------------------------------------------~~~~~l~~  220 (388)
T 3pe7_A          213 ------------------------------------------------------------------------LVDARMWL  220 (388)
T ss_dssp             ------------------------------------------------------------------------TSSCSEEE
T ss_pred             ------------------------------------------------------------------------CCcceEEE
Confidence                                                                                    00012222


Q ss_pred             EECcCCcccceecCcccccccccc--CcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCeeeeEecCc------c
Q 004270          451 FNLQSGISRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGC------S  517 (764)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~------~  517 (764)
                      ++...+......         .+.  ..+..++|+|+|+.|+..+.+     +.|++||+.+++.........      .
T Consensus       221 ~d~~~~~~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          221 INEDGTNMRKVK---------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             EETTSCCCEESC---------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred             EeCCCCceEEee---------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence            232222111111         121  246667788888766554431     238889988887544333221      0


Q ss_pred             eEEEEEeecCCEEEEE---------eCCCeEEEEEccCCeEEEEeecCCC-----------CeeEEEEcCCCcEEEEEe-
Q 004270          518 LVKIVYHRVNGLLATV---------ADDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSG-  576 (764)
Q Consensus       518 i~~~~~s~~~~~la~~---------~~d~~i~v~d~~~~~~~~~~~~h~~-----------~i~~l~~s~dg~~l~s~s-  576 (764)
                      ....+|+|||+.|+..         ..+..|++||+.+++. ..+..|..           .+.+++|+|||++|+.++ 
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            1223799999988864         4566999999998875 45555655           578899999999888665 


Q ss_pred             CCCcEEEEEc
Q 004270          577 MDGSLRIWDV  586 (764)
Q Consensus       577 ~dg~i~iwd~  586 (764)
                      .++...+|.+
T Consensus       371 ~~g~~~l~~~  380 (388)
T 3pe7_A          371 VHGKPALYLA  380 (388)
T ss_dssp             TTSSCEEEEE
T ss_pred             CCCceeEEEE
Confidence            4666666644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=2.3e-18  Score=177.16  Aligned_cols=301  Identities=13%  Similarity=0.061  Sum_probs=207.3

Q ss_pred             CEEEEEe------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEccCCce
Q 004270          152 NKVIVGS------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEE  215 (764)
Q Consensus       152 ~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~----------dg~i~iwd~~~~~~  215 (764)
                      +++++..      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..          ++.|.+||..+++.
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            4555543      3679999999999999998876555  8999999999999863          57899999999999


Q ss_pred             EEEEeccC-----CCCEEEEEEeeCCCCEEEEEe-C-CCcEEEEECCCceeeee-eecccccCeeEEEEecCC-CEEEEE
Q 004270          216 LVTFTHSM-----RGAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANE-PVLMSA  286 (764)
Q Consensus       216 ~~~~~~~~-----~~~v~~l~fs~d~~~~l~sg~-~-dg~i~iwd~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~l~s~  286 (764)
                      +.++....     ......++|+|||+ +|+++. . ++.|.+||+.+++.+.. +.  +. ....+.+.|++ ..+++.
T Consensus        94 ~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           94 EKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             EEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEE
T ss_pred             EEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEE
Confidence            88886431     23467899999999 666654 3 68999999999988877 54  22 22335677765 577888


Q ss_pred             cCCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270          287 SADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  360 (764)
Q Consensus       287 ~~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  360 (764)
                      +.||.+.+|+++...   +...      .+..+..+ ..+.+.+++..++..+.++.+.++|+.......          
T Consensus       170 ~~dg~~~~v~~~~~g---~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----------  235 (361)
T 2oiz_A          170 CGDGGLLTINLGEDG---KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----------  235 (361)
T ss_dssp             ETTSSEEEEEECTTS---SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE----------
T ss_pred             CCCCcEEEEEECCCC---cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee----------
Confidence            899999999875422   1110      11111111 122334555555555555656665543211000          


Q ss_pred             HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270          361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  440 (764)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  440 (764)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (361)
T 2oiz_A          236 --------------------------------------------------------------------------------  235 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCCee
Q 004270          441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLK  509 (764)
Q Consensus       441 ~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~  509 (764)
                             +..|++........         .........++++|+++.++.+..           .+.|.+||+.+++.+
T Consensus       236 -------~~~~~~~~~~~~~~---------~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v  299 (361)
T 2oiz_A          236 -------DGPWSLLNDEDKAK---------NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV  299 (361)
T ss_dssp             -------EEEEESCCHHHHHT---------TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred             -------cccccccCcccccc---------ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence                   00011100000000         000011113678999877776543           358999999999999


Q ss_pred             eeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC--eEEEEeecCCCCeeEEEEcCCCc
Q 004270          510 SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGK  570 (764)
Q Consensus       510 ~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~--~~~~~~~~h~~~i~~l~~s~dg~  570 (764)
                      .++..+. +..++|+|||++|++++. +.|.+||..++  +.+.++..+......++++|||+
T Consensus       300 ~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          300 ARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999888 999999999999998887 99999999999  99999877777889999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=4.1e-19  Score=183.99  Aligned_cols=277  Identities=15%  Similarity=0.163  Sum_probs=187.9

Q ss_pred             EEEEcCC--CcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee-cccccccccchhhh
Q 004270          283 LMSASAD--NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVA  358 (764)
Q Consensus       283 l~s~~~d--~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~-~~~~~~~~~~~~~~  358 (764)
                      ++.|+..  +.|.+|+++...+....+.... +....+..++|+|+|++|++++.+ .+.+|++. +++......     
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-----   78 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-----   78 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-----
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-----
Confidence            4455442  5688888876555433333221 344578899999999999998887 89999986 332111000     


Q ss_pred             HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  438 (764)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  438 (764)
                                                                              ..     .. ..+..++++|+|++
T Consensus        79 --------------------------------------------------------~~-----~~-g~~~~~~~spdg~~   96 (365)
T 1jof_A           79 --------------------------------------------------------HP-----IG-GHPRANDADTNTRA   96 (365)
T ss_dssp             --------------------------------------------------------EE-----CC-SSGGGGCTTSCCEE
T ss_pred             --------------------------------------------------------ee-----cC-CCCccEEECCCCCE
Confidence                                                                    00     00 11334778999985


Q ss_pred             --EEEEe-------------cCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEE
Q 004270          439 --AVLGT-------------AGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVW  501 (764)
Q Consensus       439 --l~~g~-------------~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iw  501 (764)
                        ++++.             .+|.+.+|++. .+.....+...    ...+...+.+++|+|+|++++++.. ++.|++|
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY----EYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE----EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence              44442             68899999997 45443322100    0124567899999999998887764 6899999


Q ss_pred             ECC-CCCee--eeEe---cCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc--CCeEE---EEee-------cCCC----
Q 004270          502 DFK-GRDLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALRMV---RKFE-------GHTD----  558 (764)
Q Consensus       502 d~~-~~~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~--~~~~~---~~~~-------~h~~----  558 (764)
                      ++. +++..  ..+.   +...+..++|+|||+++++++. ++.|.+|+++  +++..   ..+.       +|..    
T Consensus       173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence            998 67653  2333   1456899999999999988775 6899999875  56542   2222       1222    


Q ss_pred             --CeeEEE-EcCCCcEEEEEeCCC------cEEEEEcC-ccceEEE---Eee-CCceEEEEEcC---CCCeEEEEEeCCC
Q 004270          559 --RITDFC-FSEDGKWLLSSGMDG------SLRIWDVI-LARQIDA---IHV-DVSITALSLSP---NMDVLATAHVDQN  621 (764)
Q Consensus       559 --~i~~l~-~s~dg~~l~s~s~dg------~i~iwd~~-~~~~~~~---~~~-~~~v~~l~~sp---~g~~lat~~~d~~  621 (764)
                        .+..++ |+|||++|++++.+.      +|.+|++. +|++...   +.. ...+..++|+|   ||++|++++.++.
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence              488999 999999988766432      89999996 6765542   332 23478899999   8999999988755


Q ss_pred             eEEEEecccc
Q 004270          622 GVYLWVNRCM  631 (764)
Q Consensus       622 ~i~lW~~~~~  631 (764)
                      .|.+|+.+..
T Consensus       333 ~v~v~~~~~~  342 (365)
T 1jof_A          333 WLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEEEchh
Confidence            7999998643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=6.4e-20  Score=193.53  Aligned_cols=205  Identities=14%  Similarity=0.115  Sum_probs=159.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-------ceecCccccccccccCcEEEEEECCCCCEEE----EEe
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-------GSYLDMSERSNYAHNGEVVGVACDSTNTLMI----SAG  493 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~----s~~  493 (764)
                      ..+..+++++++.++++++.+| +.+|+.......       .............+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4678899999999999999888 888876432111       0000000001124567899999999999999    788


Q ss_pred             CCCeEEEEECCCC--------Cee---eeEe-cCcceEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270          494 YHGDIKVWDFKGR--------DLK---SRWE-VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI  560 (764)
Q Consensus       494 ~dg~v~iwd~~~~--------~~~---~~~~-~~~~i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i  560 (764)
                      .|+.|++||+.++        +.+   ..+. +...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            8999999998754        222   2222 3488999999998 7899999999999999999998887788899999


Q ss_pred             eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--------CceEEEEEcCCCCeEEEEEeCC------CeEEEE
Q 004270          561 TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--------VSITALSLSPNMDVLATAHVDQ------NGVYLW  626 (764)
Q Consensus       561 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~v~~l~~sp~g~~lat~~~d~------~~i~lW  626 (764)
                      ++++|+|+|++|++|+.||+|++||+. ++....+..+        ..|.+++|++++.++++.+...      ..+++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 6666665432        1599999999999887655432      248999


Q ss_pred             ecccc
Q 004270          627 VNRCM  631 (764)
Q Consensus       627 ~~~~~  631 (764)
                      +++..
T Consensus       275 ~l~~~  279 (434)
T 2oit_A          275 LLPKK  279 (434)
T ss_dssp             ECCCT
T ss_pred             EeccC
Confidence            98754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=2.5e-18  Score=178.11  Aligned_cols=288  Identities=12%  Similarity=0.157  Sum_probs=190.2

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCeEEE--EEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc-CCceEEEEeccCC
Q 004270          153 KVIVGSQE--GSLQLWNI--STKKKLY--EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMR  224 (764)
Q Consensus       153 ~l~~~~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~  224 (764)
                      ++++|+..  +.|.+|++  .++++..  ... .....+..++|+|++++|++++.+ .|.+|++. +++..........
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            57777764  46887764  5676532  222 234578899999999999999887 99999997 7776544332112


Q ss_pred             CCEEEEEEeeCCCC-EEEEEe-------------CCCcEEEEECC-Cceeeeeeec---ccccCeeEEEEecCCCEEEEE
Q 004270          225 GAVTALAFSSDGQP-LLASGA-------------SSGVISIWNLE-KRRLQSVIRE---AHDNAIISLHFFANEPVLMSA  286 (764)
Q Consensus       225 ~~v~~l~fs~d~~~-~l~sg~-------------~dg~i~iwd~~-~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~  286 (764)
                      +.+.+++|+|||+. +++++.             .+|.+.+|++. +++....+..   .+...+.+++|+|+|++|+++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            33566899999984 234442             68999999997 4655443331   245679999999999988776


Q ss_pred             c-CCCcEEEEEecCCCCCceeeEecc--CCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeec--ccccccccchhhhHH
Q 004270          287 S-ADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQ--DQQSRELSQRHVAKR  360 (764)
Q Consensus       287 ~-~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~  360 (764)
                      . .++.|++|+++. .+....+....  .|...+..++|+|||+++++++. ++.+.+|++..  ++.......      
T Consensus       163 ~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~------  235 (365)
T 1jof_A          163 DLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS------  235 (365)
T ss_dssp             ETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred             cCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce------
Confidence            5 468999999973 22222222232  24567899999999999988775 68899998753  211000000      


Q ss_pred             HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC-CCCCCC------CeEEEE-E
Q 004270          361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP-CPENPT------AVKACT-I  432 (764)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~------~v~~~~-~  432 (764)
                                                                           ...+.. ..++..      .+..++ +
T Consensus       236 -----------------------------------------------------~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          236 -----------------------------------------------------FPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             -----------------------------------------------------EESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             -----------------------------------------------------EEcCCCCcCCcccccccccccccEEEE
Confidence                                                                 000000 001111      578899 9


Q ss_pred             ccCCCEEEEEecCC------cEEEEECc-CCcccceecCccccccccccCcEEEEEECC---CCCEEEEEeCC-CeEEEE
Q 004270          433 SACGNFAVLGTAGG------WIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYH-GDIKVW  501 (764)
Q Consensus       433 s~~g~~l~~g~~~g------~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~d-g~v~iw  501 (764)
                      +|+|++++++..+.      .|.+|++. ++........     ...+...+..++|+|   +|++|++++.+ +.|++|
T Consensus       263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-----eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            99999998876543      89999986 5554321100     012344566789999   89999998864 899999


Q ss_pred             ECCCC
Q 004270          502 DFKGR  506 (764)
Q Consensus       502 d~~~~  506 (764)
                      +++..
T Consensus       338 ~~~~~  342 (365)
T 1jof_A          338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEchh
Confidence            98765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=1.3e-19  Score=190.70  Aligned_cols=318  Identities=9%  Similarity=-0.026  Sum_probs=214.0

Q ss_pred             EEEeCCCCeEEEEEcCCCCC-----eEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270          164 QLWNISTKKKLYEFKGWGSS-----ISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD  235 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~-----i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (764)
                      ...|..+++.+..+..+...     +..++|||+|++|+.....   ..|.+||+.+++... +..+.......+.|+||
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spd   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTD   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCC
Confidence            34577888888888765444     7788999999998877653   478889998876543 33332222334789999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      |+ .|+.++.++.|++||+.+++...... .+..      |+++++.|+..+.+....+|..                  
T Consensus        92 g~-~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~~~~~~~------------------  145 (396)
T 3c5m_A           92 ER-AFFYVKNELNLMKVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKLVGIEIL------------------  145 (396)
T ss_dssp             SS-EEEEEETTTEEEEEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEEEEEEEE------------------
T ss_pred             CC-EEEEEEcCCcEEEEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcccccccc------------------
Confidence            99 78888888899999999887655544 3332      7778888887776665555531                  


Q ss_pred             CCeeEEEecCCCEEEEE-----eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          316 PPLCIRFYANGRHILSA-----GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                         .+.++|+++.++..     ..+..|.+||+.+++.....                                      
T Consensus       146 ---~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--------------------------------------  184 (396)
T 3c5m_A          146 ---KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--------------------------------------  184 (396)
T ss_dssp             ---GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--------------------------------------
T ss_pred             ---ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--------------------------------------
Confidence               22356777766543     34556777776543211100                                      


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEECcCCcccceec
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFNLQSGISRGSYL  463 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~------g~i~i~~~~~~~~~~~~~  463 (764)
                                                     .+...+..+.|+| +|+.++..+.+      ..|.+|++..+...... 
T Consensus       185 -------------------------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-  232 (396)
T 3c5m_A          185 -------------------------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-  232 (396)
T ss_dssp             -------------------------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-
T ss_pred             -------------------------------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-
Confidence                                           1125678889999 88877766543      36888888765433221 


Q ss_pred             Cccccccccc-cCcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCeeeeEecCcceEEEEEee-cCCEEEEEe--
Q 004270          464 DMSERSNYAH-NGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLATVA--  534 (764)
Q Consensus       464 ~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~--  534 (764)
                             ... ...+..++|+|+|++|+.++.+     +.|++||+.+++......... .. +.|+| ||++++++.  
T Consensus       233 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~  303 (396)
T 3c5m_A          233 -------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCD  303 (396)
T ss_dssp             -------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECC
T ss_pred             -------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCC
Confidence                   111 3358889999999988777654     459999999887655443332 33 89999 999888765  


Q ss_pred             --------------CCCeEEEEEccCCeEEEEeecCCC-----------CeeEEEEcCCCcEEEEEeC-CCcEEEE--Ec
Q 004270          535 --------------DDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSGM-DGSLRIW--DV  586 (764)
Q Consensus       535 --------------~d~~i~v~d~~~~~~~~~~~~h~~-----------~i~~l~~s~dg~~l~s~s~-dg~i~iw--d~  586 (764)
                                    .+..|++||+.+++.. .+..|..           .+..++|+|||++|+.++. ++...+|  ++
T Consensus       304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          304 APVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             C----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence                          3478999999888753 4555544           2567899999999887764 4554444  55


Q ss_pred             Cccce
Q 004270          587 ILARQ  591 (764)
Q Consensus       587 ~~~~~  591 (764)
                      .+++.
T Consensus       383 ~~~~~  387 (396)
T 3c5m_A          383 PESYK  387 (396)
T ss_dssp             CTTCC
T ss_pred             ccccc
Confidence            55543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=5.2e-18  Score=178.91  Aligned_cols=259  Identities=14%  Similarity=0.142  Sum_probs=174.6

Q ss_pred             CeEEEEecCceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccc------------ccceeeEecCCccccE
Q 004270           75 NHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN------------LAPVGHVKLDDKFTPT  142 (764)
Q Consensus        75 ~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~------------~~~~~~~~~~~~~~~~  142 (764)
                      ..+++|+....   +........++..++.++++++.++ +++|+.......            ..+...+. +...+..
T Consensus        23 ~~vri~~~~~~---~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~   97 (434)
T 2oit_A           23 KKVRIFDSPEE---LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP-MKFPIHH   97 (434)
T ss_dssp             CEEECSCCCSS---CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC-CSSCEEE
T ss_pred             eeEEecCCccc---cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc-CCCcccE
Confidence            45777764322   1122233334444678888888777 888876432110            00011111 2345778


Q ss_pred             EEEeCCCCCCEEE----EEeCCCcEEEEeCCCC--------e---EEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEE
Q 004270          143 CIMHPDTYLNKVI----VGSQEGSLQLWNISTK--------K---KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIH  206 (764)
Q Consensus       143 ~~~~p~~~~~~l~----~~~~dg~i~iwd~~~~--------~---~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~  206 (764)
                      ++|+|++  ++|+    +|+.|+.|++||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.||+|+
T Consensus        98 l~~spdg--~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~  175 (434)
T 2oit_A           98 LALSCDN--LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA  175 (434)
T ss_dssp             EEECTTS--CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             EEEcCCC--CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence            8899999  7888    6888999999998654        2   24566789999999999998 88999999999999


Q ss_pred             EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCC
Q 004270          207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANE  280 (764)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~  280 (764)
                      +||++++..+..... |...|.+++|+|+|+ +|++|+.||.|++||++ ++....+..      .|...|.+++|++++
T Consensus       176 iwD~~~~~~~~~~~~-~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          176 VLQVTETVKVCATLP-STVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             EEEESSSEEEEEEEC-GGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             EEEcCCCcceeeccC-CCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence            999999876655544 378999999999998 89999999999999998 544444431      133489999999988


Q ss_pred             CEEEEE-cCCC------cEEEEEecCCCCC-ceeeEecc-------CCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEe
Q 004270          281 PVLMSA-SADN------SIKMWIFDTTDGD-PRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV  343 (764)
Q Consensus       281 ~~l~s~-~~d~------~i~vw~~~~~~~~-~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~  343 (764)
                      .++++. +.||      .+++|++...... ......+.       +...+-..+.+.++.+++++++. ...+.++..
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            776543 3343      3899998765332 11111111       22334444555577777776654 445666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=4.6e-20  Score=194.06  Aligned_cols=314  Identities=10%  Similarity=0.058  Sum_probs=208.7

Q ss_pred             EEEEccCCceEEEEeccCCC-----CEEEEEEeeCCCCEEEEE-eCC--CcEEEEECCCceeeeeeecccccCeeEEEEe
Q 004270          206 HVHNVRYDEELVTFTHSMRG-----AVTALAFSSDGQPLLASG-ASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (764)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~-----~v~~l~fs~d~~~~l~sg-~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~  277 (764)
                      ...|..+++.+..+..+ ..     .+.+++|+|||+ .|+.. ..+  ..|.+||+.+++...... ++......+.|+
T Consensus        13 ~~~d~~~g~~~~~l~~~-~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~s   89 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPT-DIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFIS   89 (396)
T ss_dssp             EEECTTTCCEEEECSCT-TSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEEC
T ss_pred             eeecCCCCcceEEEecC-CCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceEC
Confidence            45577788877777543 22     267789999999 55544 333  468899998887655433 333333447899


Q ss_pred             cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                      ||++.|+.++.++.|.+|+++...  .+.+.  ..+..      |+++|+.|+..+.++...+|..              
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~--~~~~~--~~~~~------~~~~g~~l~~~~~~~~~~~~~~--------------  145 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLE--EQVIY--TVDEE------WKGYGTWVANSDCTKLVGIEIL--------------  145 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCC--EEEEE--ECCTT------EEEEEEEEECTTSSEEEEEEEE--------------
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCC--cEEEE--ecccc------cCCCCCEEEeccCCcccccccc--------------
Confidence            999999999998889999876542  22222  22222      6677777776655544443321              


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (764)
                                                                                             .+.++|+++
T Consensus       146 -----------------------------------------------------------------------~~~~spdg~  154 (396)
T 3c5m_A          146 -----------------------------------------------------------------------KRDWQPLTS  154 (396)
T ss_dssp             -----------------------------------------------------------------------GGGCCCCCS
T ss_pred             -----------------------------------------------------------------------ccccCCCCc
Confidence                                                                                   012455666


Q ss_pred             EEEEE-----ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCC------CeEEEEECCC
Q 004270          438 FAVLG-----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKG  505 (764)
Q Consensus       438 ~l~~g-----~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~  505 (764)
                      .+++.     ..+..|.+||+.++......         .+...+..+.|+| +++.|+..+.+      ..|.+||+.+
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~  225 (396)
T 3c5m_A          155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH---------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG  225 (396)
T ss_dssp             HHHHHHHHHTCCCEEEEEEETTTCCEEEEE---------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred             ceeeeeeccCCCcceEEEEECCCCcEEeec---------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence            55543     24567889998887654433         4566789999999 78877766543      3688899877


Q ss_pred             CCeeeeEec--CcceEEEEEeecCCEEEEEeCC-----CeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEe-
Q 004270          506 RDLKSRWEV--GCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG-  576 (764)
Q Consensus       506 ~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s-  576 (764)
                      ++.......  ...+..++|+|+|++|+.++.+     +.|++||+.+++...... .. ... +.|+| ||+++++++ 
T Consensus       226 ~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          226 SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEEC
T ss_pred             CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecC
Confidence            654443332  2357889999999988777554     459999999886544322 21 233 89999 999888765 


Q ss_pred             ---------------CCCcEEEEEcCccceEEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          577 ---------------MDGSLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       577 ---------------~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                                     .+..|++||+.+++.........           .+..++|+|||++|+.++.+.....+|.++
T Consensus       303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                           34789999999887543333332           256789999999999888654345566543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=2e-16  Score=170.66  Aligned_cols=326  Identities=12%  Similarity=0.052  Sum_probs=227.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTA  229 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~  229 (764)
                      ..+++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.++.|.+||+.  +++.+.++..+  .....
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~  244 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARS  244 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCce
Confidence            3556667789999999999999999875 4467799999999999999999999999996  88888888764  45789


Q ss_pred             EEEe----eCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---------ccc-CeeEEEEecCCCE-EEEEcCCCcEEE
Q 004270          230 LAFS----SDGQPLLASGASSGVISIWNLEKRRLQSVIREA---------HDN-AIISLHFFANEPV-LMSASADNSIKM  294 (764)
Q Consensus       230 l~fs----~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------h~~-~v~~l~~~~~~~~-l~s~~~d~~i~v  294 (764)
                      ++|+    |||++++++...++.|.++|..+.+.+..+...         |.. .+..+..+++++. ++....+|.|.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            9999    699955555567799999999999888877621         222 5778888888764 445556788888


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|+.....  ..+..+ ........+.|+|+|++++++. .++.|.++|+.+++....+                     
T Consensus       325 vd~~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i---------------------  380 (567)
T 1qks_A          325 VDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE---------------------  380 (567)
T ss_dssp             EETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE---------------------
T ss_pred             EecCCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE---------------------
Confidence            87754321  111111 2334566778888888877665 4566777776543211110                     


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                                                    ++
T Consensus       381 ------------------------------------------------------------------------------~v  382 (567)
T 1qks_A          381 ------------------------------------------------------------------------------DT  382 (567)
T ss_dssp             ------------------------------------------------------------------------------EC
T ss_pred             ------------------------------------------------------------------------------ec
Confidence                                                                                          00


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEe-CCCeEEEEECCC-------CCeeeeEecC-cceEEEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAG-YHGDIKVWDFKG-------RDLKSRWEVG-CSLVKIVY  523 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~-~dg~v~iwd~~~-------~~~~~~~~~~-~~i~~~~~  523 (764)
                      - +             ...|.+.-..+ ++|++..+ +++. .++.|.++|..+       .+.+.++... ..-..+..
T Consensus       383 g-g-------------~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~  447 (567)
T 1qks_A          383 G-G-------------QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT  447 (567)
T ss_dssp             S-S-------------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             c-C-------------cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence            0 0             01343322122 56764434 4443 457888998877       5566777655 33355778


Q ss_pred             eecCCEEEEEeC-------CCeEEEEEccCC-----e-EEEEee--------cCCCCeeEEEEcCCCcEEEEEe-----C
Q 004270          524 HRVNGLLATVAD-------DLVIRLFDVVAL-----R-MVRKFE--------GHTDRITDFCFSEDGKWLLSSG-----M  577 (764)
Q Consensus       524 s~~~~~la~~~~-------d~~i~v~d~~~~-----~-~~~~~~--------~h~~~i~~l~~s~dg~~l~s~s-----~  577 (764)
                      +|+++++.+...       ..+|.|+|+.+.     . ....+.        .....+..+.|+|+|+++..+.     .
T Consensus       448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~  527 (567)
T 1qks_A          448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQ  527 (567)
T ss_dssp             CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTS
T ss_pred             CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCC
Confidence            999999988763       459999999877     2 112332        1235789999999999877653     3


Q ss_pred             CCcEEEEEcCccceEEEEee
Q 004270          578 DGSLRIWDVILARQIDAIHV  597 (764)
Q Consensus       578 dg~i~iwd~~~~~~~~~~~~  597 (764)
                      ++.|.|+|.++++++..++.
T Consensus       528 ~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          528 ESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             CCEEEEEETTTTEEEEEECC
T ss_pred             CCcEEEEECCCceEEEEeCC
Confidence            79999999999999988874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=3.5e-17  Score=184.44  Aligned_cols=327  Identities=11%  Similarity=0.025  Sum_probs=209.4

Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEE--EcCCeEEEEEccCCceEEEEeccCCCCEE---------EEEEe--eCCCC-EEEE
Q 004270          177 FKGWGSSISSCVSSPALDVVAVG--CSDGKIHVHNVRYDEELVTFTHSMRGAVT---------ALAFS--SDGQP-LLAS  242 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---------~l~fs--~d~~~-~l~s  242 (764)
                      +.+|...+..++++++.-+++..  ..++...||....+.....+..+ ...+.         ...|+  |||+. ++++
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-TCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-CccccccccccCCccceeeeecCCCeEEEEE
Confidence            45678899999999886666666  45789999997656666666554 34455         55565  99995 4444


Q ss_pred             EeCCCcEEEEECC--C-ceeeeeeecc----cccCeeEEEEecCCCEEEEEcCC----------CcEEEEEecCCC----
Q 004270          243 GASSGVISIWNLE--K-RRLQSVIREA----HDNAIISLHFFANEPVLMSASAD----------NSIKMWIFDTTD----  301 (764)
Q Consensus       243 g~~dg~i~iwd~~--~-~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~~~d----------~~i~vw~~~~~~----  301 (764)
                      ...+..|.++++.  . ++ ...+...    |...+.+++|+|||+.|++++.+          ..|.+|+++...    
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            4446778888876  3 43 3333311    66788999999999999998876          578888876521    


Q ss_pred             CCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCC--------cEEEEEee-ccc--ccccccchhhhHHHhhccchhh
Q 004270          302 GDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDR--------AFRLFSVI-QDQ--QSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       302 ~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg--------~i~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      +  . ...+. .+...+..++|+|||++|+.++.++        .|++||+. ++.  ....+.                
T Consensus       177 ~--~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~----------------  237 (662)
T 3azo_A          177 S--A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL----------------  237 (662)
T ss_dssp             G--G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE----------------
T ss_pred             C--c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC----------------
Confidence            1  1 22333 4556778899999999999877553        57777775 221  111100                


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--c
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--W  447 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g--~  447 (764)
                                                                         ..+...+..++|+|||++++++..+|  .
T Consensus       238 ---------------------------------------------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~  266 (662)
T 3azo_A          238 ---------------------------------------------------GGPEEAIAQAEWAPDGSLIVATDRTGWWN  266 (662)
T ss_dssp             ---------------------------------------------------EETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred             ---------------------------------------------------CCCCceEcceEECCCCeEEEEECCCCCeE
Confidence                                                               01235678899999999888888888  6


Q ss_pred             EEEEECcCCcccceecCccccccccccC--------cEEEEEECCCCCEEEEEeCCCeEEEE--ECCCCCeeeeEecC-c
Q 004270          448 IERFNLQSGISRGSYLDMSERSNYAHNG--------EVVGVACDSTNTLMISAGYHGDIKVW--DFKGRDLKSRWEVG-C  516 (764)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~l~s~~~dg~v~iw--d~~~~~~~~~~~~~-~  516 (764)
                      |.+|++.++.......        .+..        .+..++|+++++++++++. +.+++|  |+.+++ +..+..+ .
T Consensus       267 l~~~~~~~~~~~~l~~--------~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~  336 (662)
T 3azo_A          267 LHRVDPATGAATQLCR--------REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT  336 (662)
T ss_dssp             EEEECTTTCCEEESSC--------CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC
T ss_pred             EEEEECCCCceeeccc--------ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCC
Confidence            7777776665443221        1111        1567899999999999998 999999  555555 4445444 4


Q ss_pred             ceEEEEEeecCCEEE--EEeCCC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          517 SLVKIVYHRVNGLLA--TVADDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       517 ~i~~~~~s~~~~~la--~~~~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      .+..+ ++++++.++  .++.+.  .|.++|+.+++.......|...+....+++.....+.+..+..|..|-.
T Consensus       337 ~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          337 EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            45544 256666444  334443  5666677777765544555555555555554444444433445655543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=5.1e-17  Score=183.11  Aligned_cols=293  Identities=11%  Similarity=0.013  Sum_probs=193.1

Q ss_pred             CCCCEEEEEEeeCCCCEEEEE--eCCCcEEEEECCCceeeeeeecccccCee---------EEEEe--cCCCE-EEEEcC
Q 004270          223 MRGAVTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAII---------SLHFF--ANEPV-LMSASA  288 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~-l~s~~~  288 (764)
                      |...+..++|++++- +++..  +.++...||....+.....+. .|...+.         ...|+  ||++. |+.++.
T Consensus        22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            367899999998765 55555  457889999864444444454 4555555         66676  99998 776654


Q ss_pred             CCcEEEEEecCC--C-CCceeeEecc--CCCCCCeeEEEecCCCEEEEEeCC----------CcEEEEEeec------cc
Q 004270          289 DNSIKMWIFDTT--D-GDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQ------DQ  347 (764)
Q Consensus       289 d~~i~vw~~~~~--~-~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~d----------g~i~i~d~~~------~~  347 (764)
                      . ...+|.++..  . +..+.+....  .|...+..++|+|||+.|++++.+          ..|++|++.+      +.
T Consensus       100 ~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          100 G-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             T-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             C-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence            2 4455555543  1 2222221110  056678899999999999988866          3566666544      11


Q ss_pred             ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCe
Q 004270          348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  427 (764)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  427 (764)
                      . ..+                                                                 .  ..+...+
T Consensus       179 ~-~~l-----------------------------------------------------------------~--~~~~~~~  190 (662)
T 3azo_A          179 V-REL-----------------------------------------------------------------S--DDAHRFV  190 (662)
T ss_dssp             S-EES-----------------------------------------------------------------S--CSCSSEE
T ss_pred             e-eEE-----------------------------------------------------------------E--ecCCCcc
Confidence            1 000                                                                 0  0112456


Q ss_pred             EEEEEccCCCEEEEEecC--------CcEEEEECc-CCc--ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          428 KACTISACGNFAVLGTAG--------GWIERFNLQ-SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~--------g~i~i~~~~-~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                      ..++|||||++|+.++.+        ..|++|++. ++.  ....+.       ..|...+..++|+|||++++++..++
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTSCEEEEECTTS
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCCeEEEEECCCC
Confidence            678999999999988755        379999998 562  222222       25578899999999999888888888


Q ss_pred             --eEEEEECCCCCeeeeEecCcc---------eEEEEEeecCCEEEEEeCCCeEEEE--EccCCeEEEEeecCCCCeeEE
Q 004270          497 --DIKVWDFKGRDLKSRWEVGCS---------LVKIVYHRVNGLLATVADDLVIRLF--DVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       497 --~v~iwd~~~~~~~~~~~~~~~---------i~~~~~s~~~~~la~~~~d~~i~v~--d~~~~~~~~~~~~h~~~i~~l  563 (764)
                        .|.+||..+++.......+..         +..+++++++++++++.. +.++||  |+.+++ +..+..|...+..+
T Consensus       264 ~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          264 WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred             CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence              666677667766554443322         467899999999999998 999999  555565 67888888888877


Q ss_pred             -EEcCCCcEEEEEeCCC--cEEEEEcCccceEEEE
Q 004270          564 -CFSEDGKWLLSSGMDG--SLRIWDVILARQIDAI  595 (764)
Q Consensus       564 -~~s~dg~~l~s~s~dg--~i~iwd~~~~~~~~~~  595 (764)
                       +++++.-++++++.+.  .|.+||+.+++.....
T Consensus       342 ~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          342 LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence             5544333344455554  4556677777654443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=3.8e-15  Score=160.69  Aligned_cols=338  Identities=10%  Similarity=0.024  Sum_probs=230.6

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKG  179 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~  179 (764)
                      .+..+++...+++|.++|..+++.    +.++.... ....+.++|++  +++++++.++.|.+||+.  +++.+.++..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v----~~~i~~g~-~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEI----KTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCE----EEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CceEEEEeCCCCeEEEEECCCCeE----EEEEeCCC-CccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            345667777789999999999988    66666443 33477899999  899999999999999996  8888888876


Q ss_pred             CCCCeEEEEEc----CCCCEEEEEEc-CCeEEEEEccCCceEEEEeccC----------CCCEEEEEEeeCCCCEEEEEe
Q 004270          180 WGSSISSCVSS----PALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSSDGQPLLASGA  244 (764)
Q Consensus       180 h~~~i~~~~~s----p~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~d~~~~l~sg~  244 (764)
                       ......++|+    |+|++++++.. ++.|.++|..+.+.+..+....          ...+..+.+++++..+++...
T Consensus       239 -G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          239 -GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             -CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             -CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence             3456799999    69999888765 4999999999999988876321          226888999998875666667


Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEecc-----CCCCCCe
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRS-----GHSAPPL  318 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~-----~h~~~v~  318 (764)
                      .+|.|.++|..+.+...............+.|+|++++++++. .++.|.++|..+.    ++.....     .|.+  .
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~----kl~~~i~vgg~~Phpg--~  391 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPG--R  391 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCT--T
T ss_pred             CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC----cEEEEEeccCcCCCCc--c
Confidence            7899999998876433332223445677889999999876655 5789999988765    3333222     2332  2


Q ss_pred             eEE-EecCCCEEE-EEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270          319 CIR-FYANGRHIL-SAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (764)
Q Consensus       319 ~i~-~~~~~~~l~-s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (764)
                      .+. ++|++..+. ++. .++.|.++|.........                                    .|..    
T Consensus       392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~------------------------------------~~kv----  431 (567)
T 1qks_A          392 GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN------------------------------------AWKI----  431 (567)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT------------------------------------BTSE----
T ss_pred             ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccc------------------------------------cCEE----
Confidence            333 577755554 443 468899999865221000                                    0000    


Q ss_pred             eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-------CCcEEEEECcCC-----ccc-cee
Q 004270          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-------GGWIERFNLQSG-----ISR-GSY  462 (764)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-------~g~i~i~~~~~~-----~~~-~~~  462 (764)
                            +..            +.   ........+..+|+++++.+...       .+.|.+||+.+.     ... ..+
T Consensus       432 ------v~~------------i~---~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~  490 (567)
T 1qks_A          432 ------LDS------------FP---ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  490 (567)
T ss_dssp             ------EEE------------EE---CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             ------EEE------------Ee---cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence                  000            00   00012233567999999999774       459999999876     211 111


Q ss_pred             cCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEec
Q 004270          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEV  514 (764)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~  514 (764)
                      ....-..+..-...+..+.|+++|+.+..+..     ++.|.++|.++++++..++.
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          491 PIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             CHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             ccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            10000000112457899999999998877643     78999999999998888774

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=1.5e-15  Score=151.42  Aligned_cols=242  Identities=13%  Similarity=0.177  Sum_probs=179.8

Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      ++...+.+++++++++.+++...++.|.+||.. +.....+..                                     
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------------------------------   68 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE-------------------------------------   68 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-------------------------------------
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-------------------------------------
Confidence            556678999999999988888888999999864 221111100                                     


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-ccCCCEEEEEec-CCcEEEEECcCCcccceecCccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-SACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                               ......+...+..+++ .++|+++++... ++.|.+|+ .++.....+.      
T Consensus        69 -------------------------~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~------  116 (286)
T 1q7f_A           69 -------------------------CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG------  116 (286)
T ss_dssp             -------------------------BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC------
T ss_pred             -------------------------cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec------
Confidence                                     0000122356788999 467776666644 88999999 5566555543      


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                       ..+...+.+++++++++++++...++.|.+||.. ++.+..+..   ...+..++++++++++++...++.|++||.. 
T Consensus       117 -~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-  193 (286)
T 1q7f_A          117 -ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-  193 (286)
T ss_dssp             -TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred             -CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-
Confidence             1345678999999999988888888999999954 556666543   2568899999999988888889999999974 


Q ss_pred             CeEEEEeecC--CCCeeEEEEcCCCcEEEEEeCCC-cEEEEEcCccceEEEEeeCCc---eEEEEEcCCCCeEEEEEeCC
Q 004270          547 LRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       547 ~~~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~---v~~l~~sp~g~~lat~~~d~  620 (764)
                      ++.+..+..+  ...+..++++++|+++++...++ .|.+|| .+++.+..+..+..   +.+++++|+|+++++ +.++
T Consensus       194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred             CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCC
Confidence            5666666543  36789999999999888888776 999999 46788887766543   789999999987777 5566


Q ss_pred             CeEEEEecc
Q 004270          621 NGVYLWVNR  629 (764)
Q Consensus       621 ~~i~lW~~~  629 (764)
                       .|++|+..
T Consensus       272 -~v~v~~~~  279 (286)
T 1q7f_A          272 -RLYIYRYV  279 (286)
T ss_dssp             -EEEEEECS
T ss_pred             -eEEEEEcc
Confidence             79999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=7.2e-16  Score=156.84  Aligned_cols=272  Identities=12%  Similarity=0.041  Sum_probs=187.5

Q ss_pred             CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      .-..+.+++++++|+.+++...++.+.+++.....   .+...                                 .   
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~---~~~~~---------------------------------~---   62 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF---VYQQR---------------------------------G---   62 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS---CBSCG---------------------------------G---
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcce---eeccc---------------------------------c---
Confidence            34678999999999998888877654443322111   00000                                 0   


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccc-ccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSE-RSN  470 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~-~~~  470 (764)
                       .....++.+.+||..+.......   ...+...+..++++++|+++++...++.|.+|+..... ....+..... ...
T Consensus        63 -~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~  138 (329)
T 3fvz_A           63 -LGPIEEDTILVIDPNNAEILQSS---GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD  138 (329)
T ss_dssp             -GCSCCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred             -cccccCCcEEEEECCCCeEEecc---CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence             00013456777776554432111   11333578999999999988888889999999986542 3333311000 000


Q ss_pred             ccccCcEEEEEECC-CCCEEEEEe-CCCeEEEEECCCCCeeeeEecC-----------cceEEEEEeec-CCEEEEEeCC
Q 004270          471 YAHNGEVVGVACDS-TNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----------CSLVKIVYHRV-NGLLATVADD  536 (764)
Q Consensus       471 ~~h~~~v~~l~~~~-~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-----------~~i~~~~~s~~-~~~la~~~~d  536 (764)
                      ..+.....+++++| ++.++++.+ .++.|++|+ .+++.+..+...           .....++++|+ +.++++...+
T Consensus       139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            14455789999999 788888886 689999999 566766666422           23789999998 6777777788


Q ss_pred             CeEEEEEccCCeEEEEee--cCCCCeeEEEEcCCCcEEEEE-------eCCCcEEEEEcCccceEEEEee----CCceEE
Q 004270          537 LVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSS-------GMDGSLRIWDVILARQIDAIHV----DVSITA  603 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~s~-------s~dg~i~iwd~~~~~~~~~~~~----~~~v~~  603 (764)
                      +.|++||..+++.+..+.  ++...+.+++|+| +..+++.       ..+..|++||..+++.+..+..    -..+.+
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence            999999999899988884  4567789999999 4444333       3445899999999999988842    233899


Q ss_pred             EEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          604 LSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       604 l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      ++++|+|.++++...++ .|++|+...
T Consensus       297 ia~~~dG~lyvad~~~~-~I~~~~~~~  322 (329)
T 3fvz_A          297 IVASEDGTVYIGDAHTN-TVWKFTLTE  322 (329)
T ss_dssp             EEECTTSEEEEEESSSC-CEEEEEEEE
T ss_pred             EEECCCCCEEEEECCCC-EEEEEeCCc
Confidence            99999997666666666 699999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=9.9e-16  Score=155.80  Aligned_cols=252  Identities=13%  Similarity=0.114  Sum_probs=183.9

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCC------------------------CcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270          224 RGAVTALAFSSDGQPLLASGASS------------------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~d------------------------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      -+.+.+++++|+|+ ++++...+                        +.|.+||..+++.......++-..+..+++.|+
T Consensus        23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            35799999999998 77777766                        479999999898876665455568899999999


Q ss_pred             CCEEEEEcCCCcEEEEEecCCCCCceeeEec---------cCCCCCCeeEEEec-CCCEEEEEe-CCCcEEEEEeecccc
Q 004270          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFR---------SGHSAPPLCIRFYA-NGRHILSAG-QDRAFRLFSVIQDQQ  348 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---------~~h~~~v~~i~~~~-~~~~l~s~~-~dg~i~i~d~~~~~~  348 (764)
                      ++++++...++.|++|+.+...   ..+..+         .++...+..++++| ++..+++.+ .++.|++|+. .+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~  177 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF  177 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE
T ss_pred             CCEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE
Confidence            9988888889999999764331   122222         34555789999999 788777776 6888888873 1111


Q ss_pred             cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (764)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (764)
                      ...+                                                                            
T Consensus       178 ~~~~----------------------------------------------------------------------------  181 (329)
T 3fvz_A          178 VTQW----------------------------------------------------------------------------  181 (329)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEe----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCC
Q 004270          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                                    ...|        .+..  .        ..++-....+++++|+ +.++++...++.|++|+..+++
T Consensus       182 --------------~~~g--------~~~~--~--------~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~  229 (329)
T 3fvz_A          182 --------------GEES--------SGSS--P--------RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE  229 (329)
T ss_dssp             --------------CEEC--------CSSS--C--------CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred             --------------ccCC--------CCCC--C--------CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence                          0000        0000  0        0133345788999998 7777777788999999999888


Q ss_pred             eeeeEecC---cceEEEEEee------cCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEE
Q 004270          508 LKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS  575 (764)
Q Consensus       508 ~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~  575 (764)
                      .+..+...   ..+..++++|      +++..++...+..|++||..+++.+..+.   ++...+..++++|||.++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          230 FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred             EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence            88877533   5678888988      33333333445689999999999998884   677789999999999888888


Q ss_pred             eCCCcEEEEEcCc
Q 004270          576 GMDGSLRIWDVIL  588 (764)
Q Consensus       576 s~dg~i~iwd~~~  588 (764)
                      ..++.|++|++..
T Consensus       310 ~~~~~I~~~~~~~  322 (329)
T 3fvz_A          310 AHTNTVWKFTLTE  322 (329)
T ss_dssp             SSSCCEEEEEEEE
T ss_pred             CCCCEEEEEeCCc
Confidence            8999999999763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=2.1e-15  Score=155.21  Aligned_cols=271  Identities=11%  Similarity=0.085  Sum_probs=180.4

Q ss_pred             CCeEEEEEcCCCCEEEEEE---------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC---C--
Q 004270          182 SSISSCVSSPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS---G--  247 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d---g--  247 (764)
                      ..+...++  ||+.++...         .++.|.+||+.+++... +     ..+..++|+|||+ .|+..+.+   +  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-----~~~~~~~~SpDg~-~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-----ENATMPRISPDGK-KIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-----ESCEEEEECTTSS-EEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-----ccCCCeEECCCCC-EEEEEEeccCCCcc
Confidence            34566677  888777642         25679999999876533 3     4578999999999 66655532   2  


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC---------------------------CcEEEEEecCC
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---------------------------NSIKMWIFDTT  300 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------~~i~vw~~~~~  300 (764)
                      .|.+||+.+++......  +.. +..+.|+||++.|+.++.+                           ..|.+|++...
T Consensus        86 ~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           86 EIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             eEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            48888998887665554  333 9999999999988887632                           45677766543


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC-------cEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-------AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                          ..+..+.. . .+..+.|+||| .++++..++       ...+|.+.++ ....+                     
T Consensus       163 ----~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l---------------------  213 (347)
T 2gop_A          163 ----EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKM---------------------  213 (347)
T ss_dssp             ----EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEE---------------------
T ss_pred             ----eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEe---------------------
Confidence                22122222 2 78899999999 777776542       3445544311 10000                     


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC--------
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--------  445 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~--------  445 (764)
                                                                 ..    + ..+..+  +|+|++++.++.+        
T Consensus       214 -------------------------------------------~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~  243 (347)
T 2gop_A          214 -------------------------------------------FE----K-VSFYAV--DSDGERILLYGKPEKKYMSEH  243 (347)
T ss_dssp             -------------------------------------------EE----E-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred             -------------------------------------------cc----C-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence                                                       00    0 122233  8999988877654        


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEE-EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG-VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH  524 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s  524 (764)
                      ..|.+|+  ++......        ..|...+.. +.|+ ++ ++++++.++.+++| +.+++..........+.+++++
T Consensus       244 ~~l~~~d--~~~~~~l~--------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          244 NKLYIYD--GKEVMGIL--------DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD  310 (347)
T ss_dssp             CEEEEEC--SSCEEESS--------TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred             ceEEEEC--CCceEecc--------ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence            3688888  44433322        256677886 9999 88 88999999999999 8866665555556788999999


Q ss_pred             ecCCEEEEEeCCCeE-EEEEccCCeEEEEeecCCCCe
Q 004270          525 RVNGLLATVADDLVI-RLFDVVALRMVRKFEGHTDRI  560 (764)
Q Consensus       525 ~~~~~la~~~~d~~i-~v~d~~~~~~~~~~~~h~~~i  560 (764)
                      |  .++++++.++.. .+|.++ ++ ...+..|...+
T Consensus       311 ~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~  343 (347)
T 2gop_A          311 E--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI  343 (347)
T ss_dssp             S--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred             C--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence            9  677777776654 777776 54 45566665543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=1.1e-15  Score=156.13  Aligned_cols=268  Identities=12%  Similarity=0.049  Sum_probs=193.8

Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      ..|.++.|++++..++..+.++.++.|.-       .....+..+...+.+++|+++|+.++++..++.|.+||..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA-------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeecCCccceeEEeecccCccccc-------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence            45778888988877777788889999921       34445556777789999999999777888889999998754432


Q ss_pred             cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (764)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (764)
                      ....                                                                 .   .....+.
T Consensus        79 ~~~~-----------------------------------------------------------------~---~~~~~~~   90 (333)
T 2dg1_A           79 KRPF-----------------------------------------------------------------V---SHKANPA   90 (333)
T ss_dssp             EEEE-----------------------------------------------------------------E---CSSSSEE
T ss_pred             EEEe-----------------------------------------------------------------e---CCCCCcc
Confidence            1100                                                                 0   1125789


Q ss_pred             EEEEccCCCEEEEEecC----CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC------CCeE
Q 004270          429 ACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI  498 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~v  498 (764)
                      +++++++|+++++...+    +.|.+||..++.....+..      ..+...+.+++++|+|+++++...      .+.|
T Consensus        91 ~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           91 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------CccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence            99999999988877666    6899999988765433221      124467899999999988877654      3566


Q ss_pred             EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccC-CeEEE--------EeecCCCCeeEEEEcCC
Q 004270          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRMVR--------KFEGHTDRITDFCFSED  568 (764)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~-~~~~~--------~~~~h~~~i~~l~~s~d  568 (764)
                      ..++..+++..........+..++++|+++.++++ ..++.|.+||..+ +..+.        .+.++ ..+..++++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~  243 (333)
T 2dg1_A          165 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSD  243 (333)
T ss_dssp             EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred             EEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCC
Confidence            66666655554443334567889999999866554 5678999999963 33221        12222 46788999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCccceEEEEeeCC-------ceEEEEEcCCCCeEEEEEeC
Q 004270          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~g~~lat~~~d  619 (764)
                      |+++++...++.|.+||. +++.+..+..+.       .+.+++|+||+..|+.++.+
T Consensus       244 G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            998888878899999998 577787776654       48999999998888776665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=3.5e-15  Score=148.71  Aligned_cols=242  Identities=12%  Similarity=0.151  Sum_probs=176.1

Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec------cCCCCCCeeEEEe-cCCCEEEEEeC-CCc
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------SGHSAPPLCIRFY-ANGRHILSAGQ-DRA  337 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~------~~h~~~v~~i~~~-~~~~~l~s~~~-dg~  337 (764)
                      ++-..+.++++++++.++++...++.|.+|+.+.     ..+..+      .++...+..+++. ++++.+++... ++.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            4556789999999999888888899999997652     223222      1344578899995 56665555533 788


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |.+|+. ++.....+.                                                                
T Consensus       102 i~~~d~-~g~~~~~~~----------------------------------------------------------------  116 (286)
T 1q7f_A          102 IQIYNQ-YGQFVRKFG----------------------------------------------------------------  116 (286)
T ss_dssp             EEEECT-TSCEEEEEC----------------------------------------------------------------
T ss_pred             EEEECC-CCcEEEEec----------------------------------------------------------------
Confidence            999883 322211110                                                                


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                         ......+..++++++|+++++...++.|.+|+.. +.....+..      ..+...+.+++++++++++++...++.
T Consensus       117 ---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          117 ---ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC------SKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             ---TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             ---CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence               0122567899999999988887788999999964 444443321      134457899999999998888888999


Q ss_pred             EEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCC-eEEEEEccCCeEEEEeecCCC--CeeEEEEcCCCcE
Q 004270          498 IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKW  571 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~-~i~v~d~~~~~~~~~~~~h~~--~i~~l~~s~dg~~  571 (764)
                      |++||.. ++.+..+...   ..+..++++++|+++++...++ .|.+||. +++.+..+..+..  .+.+++++|+|++
T Consensus       187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence            9999974 5555555443   5688999999999888888776 9999995 5667777765543  4779999999987


Q ss_pred             EEEEeCCCcEEEEEcCccc
Q 004270          572 LLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       572 l~s~s~dg~i~iwd~~~~~  590 (764)
                      +++ +.|++|++|++....
T Consensus       265 ~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          265 VLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEE-ETTTEEEEEECSCCC
T ss_pred             EEE-CCCCeEEEEEccccc
Confidence            777 579999999986543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=2e-15  Score=155.32  Aligned_cols=182  Identities=5%  Similarity=-0.010  Sum_probs=130.5

Q ss_pred             eEEEEEccCCCEEEEEecC---------------------------CcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270          427 VKACTISACGNFAVLGTAG---------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~~---------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (764)
                      +..++|+|+|+.|+.++.+                           ..|++|++.++.....+.        . . .+..
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~--------~-~-~~~~  175 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE--------K-P-RFSS  175 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE--------E-E-TTCE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec--------C-C-Cccc
Confidence            7889999999998887642                           578999998887634443        2 3 6788


Q ss_pred             EEECCCCCEEEEEeCCC-------eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC--------CeEEEEEc
Q 004270          480 VACDSTNTLMISAGYHG-------DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD--------LVIRLFDV  544 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d--------~~i~v~d~  544 (764)
                      ++|+|+| +++++..++       ...+|.+.+++....... ..+..+  +|||+.|+.++.+        ..|.+|| 
T Consensus       176 ~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-  250 (347)
T 2gop_A          176 GIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-  250 (347)
T ss_dssp             EEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred             ccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence            9999999 777776542       334444445554433333 444443  9999999887754        3688888 


Q ss_pred             cCCeEEEEeecCCCCeeE-EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeE
Q 004270          545 VALRMVRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGV  623 (764)
Q Consensus       545 ~~~~~~~~~~~h~~~i~~-l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i  623 (764)
                       +++......+|...+.. +.|+ || ++++++.++.+++| +.+++....+.....|.+++|+|  .++++++.++...
T Consensus       251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~  324 (347)
T 2gop_A          251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLR  324 (347)
T ss_dssp             -SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCC
T ss_pred             -CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChH
Confidence             66655555667778886 9999 88 88899999999999 88777655555555699999999  6777777666433


Q ss_pred             EEEecc
Q 004270          624 YLWVNR  629 (764)
Q Consensus       624 ~lW~~~  629 (764)
                      .+|..+
T Consensus       325 ~l~~~~  330 (347)
T 2gop_A          325 ELFTWD  330 (347)
T ss_dssp             EEEEES
T ss_pred             HheEeC
Confidence            677654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=4.9e-15  Score=150.33  Aligned_cols=280  Identities=9%  Similarity=0.056  Sum_probs=197.6

Q ss_pred             CCCcEEEEECCCceeeeeeec-----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270          245 SSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (764)
                      .++.|.++|.++++....+..     ........+.+. +++..++...++.|.+||..+.    +.+..+. ....+..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----~~~~~i~-~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----KEVGRIT-GFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----CEEEEEE-CCSSEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----EEEEEcC-CCCCCcE
Confidence            378999999999987765531     122345677774 4556666667899999988765    3444443 3467889


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      ++++++++..++...++.|.+||..+.+....+..+.                                           
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-------------------------------------------  125 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD-------------------------------------------  125 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT-------------------------------------------
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC-------------------------------------------
Confidence            9999998544444478999999987655433221100                                           


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                          ..........+++  +++.++++.  .++.|.++|..+++....+.         .....
T Consensus       126 --------------------~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~---------~g~~p  174 (328)
T 3dsm_A          126 --------------------MDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT---------IGIQP  174 (328)
T ss_dssp             --------------------CCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE---------CSSCB
T ss_pred             --------------------ccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE---------cCCCc
Confidence                                0000113344555  455555555  48899999999988776654         12345


Q ss_pred             EEEEECCCCCEEEEEeCC----------CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          478 VGVACDSTNTLMISAGYH----------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      ..++++++|++++++..+          +.|.++|..+++....+...  .....++++|+++.+.++..  .|.+||..
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            678999999977777655          78999999999888777653  47899999999999988765  89999999


Q ss_pred             CCeEEEE--eecCCCCeeEEEEcC-CCcEEEEE----eCCCcEEEEEcCccceEEEEeeCCceEEEEEc
Q 004270          546 ALRMVRK--FEGHTDRITDFCFSE-DGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (764)
Q Consensus       546 ~~~~~~~--~~~h~~~i~~l~~s~-dg~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~s  607 (764)
                      +++....  +..+......++++| ++++.++.    ..++.|.+||.. |+.+..+........++|-
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence            8876421  222245688999999 56666665    578999999998 9999999876667777773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1.4e-14  Score=147.07  Aligned_cols=280  Identities=10%  Similarity=-0.001  Sum_probs=194.8

Q ss_pred             CCCcEEEEeCCCCeEEEEEc------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270          159 QEGSLQLWNISTKKKLYEFK------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f  232 (764)
                      .+++|.++|.++++....+.      ........+++.. +++.++...++.|.+||..+++.+.++..  ......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEE
Confidence            37899999999998776541      1224467777753 44555555679999999999999988854  467899999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc----cCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceee
Q 004270          233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD----NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~  307 (764)
                      +++++ +.++...++.|.+||..+++....+..+..    .....+++ .++.++++.. .++.|.++|..+.    +..
T Consensus        92 ~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~----~~~  165 (328)
T 3dsm_A           92 LSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD----KVV  165 (328)
T ss_dssp             EETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT----EEE
T ss_pred             eCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC----eEE
Confidence            99986 666655789999999999998877763221    14567777 4444444443 4889999987765    344


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEeCC----------CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          308 RFRSGHSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      ..... ...+..++++++|++++++..+          +.|.++|..+.+....+.                        
T Consensus       166 ~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~------------------------  220 (328)
T 3dsm_A          166 DELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK------------------------  220 (328)
T ss_dssp             EEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE------------------------
T ss_pred             EEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe------------------------
Confidence            43332 3346788999999877766544          567777765443221110                        


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                                               .  .....+..++++|++++++++..  .|.+||..+++
T Consensus       221 -----------------------------------------~--~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          221 -----------------------------------------F--KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             -----------------------------------------C--CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred             -----------------------------------------c--CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence                                                     0  00136789999999999998765  89999998887


Q ss_pred             ccceecCccccccccccCcEEEEEECC-CCCEEEEE----eCCCeEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISA----GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH  524 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s  524 (764)
                      ......      ...+.....+++++| ++.++++.    ..++.|.+||.. ++.+..+........++|-
T Consensus       256 ~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          256 VPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             CCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred             eeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence            642111      012246789999999 55666665    578999999998 8888888776666666553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=5e-15  Score=151.30  Aligned_cols=270  Identities=11%  Similarity=0.017  Sum_probs=188.2

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (764)
                      ..|.+++|++++. .++..+.++.++.|   .++....+. .+...+.+++|++++++++++..++.|.+|+.+..    
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~----   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK----   76 (333)
T ss_dssp             CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----
T ss_pred             cccceeeecCCcc-ceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC----
Confidence            4578889999887 55555778899999   345555555 56667899999999998888888999999976544    


Q ss_pred             eeeEeccCCCCCCeeEEEecCCCEEEEEeCC----CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      ........+...+.+++++++|+++++...+    +.|.+||..+......+                            
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~----------------------------  128 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII----------------------------  128 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE----------------------------
T ss_pred             cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE----------------------------
Confidence            2222222456789999999999887777666    57888886543221000                            


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA------GGWIERFNLQ  454 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------~g~i~i~~~~  454 (764)
                                                           .. ......+..++++|+|+++++...      .+.|..++..
T Consensus       129 -------------------------------------~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A          129 -------------------------------------ED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             -------------------------------------CS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             -------------------------------------cc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence                                                 00 012256889999999987776653      3567777766


Q ss_pred             CCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCC-CCeeeeE------e--cCcceEEEEEe
Q 004270          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKG-RDLKSRW------E--VGCSLVKIVYH  524 (764)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~-~~~~~~~------~--~~~~i~~~~~s  524 (764)
                      ++......         .+...+.+++++|+++.++ +.+.++.|.+|+..+ +.....+      .  ....+..++++
T Consensus       171 ~~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          171 FRTVTPII---------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             SCCEEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             CCEEEEee---------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence            54433221         2334578999999998654 445678999999964 3332211      1  12367889999


Q ss_pred             ecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC------CeeEEEEcCCCcEEEEEeCCC
Q 004270          525 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD------RITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~------~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      ++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+||++.|+.++.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            99998888888899999998 4666777764433      689999999987776555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.69  E-value=3.1e-11  Score=138.32  Aligned_cols=511  Identities=10%  Similarity=0.085  Sum_probs=314.7

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCC-----CCcceEEEEEeCC-eEEEEECCeEEEEecCc-eEEEeccccc---
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQ-----LPKKIRALASYRD-YTFAAYGNHIAVVKRAH-QVATWSRHSA---   94 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-----~~~~I~~~~~~~~-~~~~a~g~~i~vw~~~~-~~~~~~~h~~---   94 (764)
                      ...++=.+.. .-+.-||-.+.+.....+.     ....|.++..+++ ..++++.+.+..||..+ ....+.....   
T Consensus        52 ~~G~lWigT~-~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~~  130 (795)
T 4a2l_A           52 KRGNMWFATY-DGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKH  130 (795)
T ss_dssp             TTSCEEEEET-TEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCEETTEE
T ss_pred             CCCCEEEeec-CcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEEEeCCchheeCCCCCeEEeccccccCCC
Confidence            3445555554 4567788765444332111     2467999999988 57788887899999754 3333432211   


Q ss_pred             -ceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc-ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC
Q 004270           95 -KVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK  171 (764)
Q Consensus        95 -~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~  171 (764)
                       .|.++..+ ...|..++. +.+..||..+++......   ...... +..+...+++   .+.+++.++.|..||..++
T Consensus       131 ~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~---~~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~  203 (795)
T 4a2l_A          131 LQVNGIEEISPEQLLISTP-EGLIMFDIKESKFIDDSF---STAMHKTIASTLYRQGD---QIYIGTSTDGLYTYSITQK  203 (795)
T ss_dssp             CCCCEEEEEETTEEEEEET-TEEEEEETTTTEEECSSS---CHHHHTCCEEEEEEETT---EEEEEESSSCEEEEETTTC
T ss_pred             ceEEEEEECCCCCEEEEEC-CceEEEECCCCEEEeccC---CCCCCcceEEEEECCCC---CEEEEECCCCEEEEeCCCC
Confidence             18888764 444555554 558899987654421100   000112 3444455555   5777887656999998777


Q ss_pred             eEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEEE
Q 004270          172 KKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       172 ~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      +..... ..+...|.++...+++. |.+|+.++-+.+||..+++.. .+...       ....|.++...++|.  |..|
T Consensus       204 ~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWig  279 (795)
T 4a2l_A          204 TFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNR--LWIG  279 (795)
T ss_dssp             CEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSC--EEEE
T ss_pred             eEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCC--EEEE
Confidence            654321 12356788888888776 445665545889998766543 33221       135699999988887  4556


Q ss_pred             eCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec----cCC
Q 004270          244 ASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR----SGH  313 (764)
Q Consensus       244 ~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~----~~h  313 (764)
                      +.+ -|.+||..+++.......      -....|.++...++|. |..|+.++-|..|+.....  .......    .-.
T Consensus       280 t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~  355 (795)
T 4a2l_A          280 TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLS  355 (795)
T ss_dssp             ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS--SEEECCCTTSSSCS
T ss_pred             eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCC
Confidence            655 589999887765433210      1235799999888886 4556666778888654331  1111110    012


Q ss_pred             CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                      ...|.++...++|. |..|+.++-|..|+..++........                                       
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~---------------------------------------  395 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQ---------------------------------------  395 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---------------------------------------
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecC---------------------------------------
Confidence            34588888887776 55567676688888654321110000                                       


Q ss_pred             EeeeCCceEEEEEccceeecceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                                     .    .   ... ......|.+++..++|+.+.+|+.++-+.+|+..++........ .   ...
T Consensus       396 ---------------~----~---~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~---~~l  449 (795)
T 4a2l_A          396 ---------------E----D---ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-N---SQL  449 (795)
T ss_dssp             ----------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-T---SCC
T ss_pred             ---------------C----C---CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-C---CCc
Confidence                           0    0   000 01125788999999998788888888899999987764332110 0   012


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-------CcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      +...|.++..+++|++.+.. . +-+.+||..+++.......       ...|.++...++|.+.+.. . +.+..||..
T Consensus       450 ~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~  525 (795)
T 4a2l_A          450 VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQE  525 (795)
T ss_dssp             SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEE
T ss_pred             CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCC
Confidence            34679999999988866554 4 4588899877654332211       2568888888888766654 4 568889988


Q ss_pred             CCeEEEEee-------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-----CCceEEEEEcCCCCeE
Q 004270          546 ALRMVRKFE-------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVL  613 (764)
Q Consensus       546 ~~~~~~~~~-------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l  613 (764)
                      +++.  .+.       .+...|.++...++|++.++.. . -|..||..+++.. .+..     ...|.++...++|.+.
T Consensus       526 ~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW  600 (795)
T 4a2l_A          526 GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLW  600 (795)
T ss_dssp             TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEE
T ss_pred             CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEE
Confidence            7765  332       1235689999999998666544 3 4888998766443 3322     2248899999999877


Q ss_pred             EEEEeCCCeEEEEecc
Q 004270          614 ATAHVDQNGVYLWVNR  629 (764)
Q Consensus       614 at~~~d~~~i~lW~~~  629 (764)
                      +++  +. +|..|+.+
T Consensus       601 i~t--~~-Gl~~~~~~  613 (795)
T 4a2l_A          601 LST--NR-GISCFNPE  613 (795)
T ss_dssp             EEE--TT-EEEEEETT
T ss_pred             EEc--CC-ceEEEcCC
Confidence            666  33 58888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.69  E-value=2.2e-14  Score=144.40  Aligned_cols=304  Identities=10%  Similarity=0.053  Sum_probs=208.8

Q ss_pred             EEEeCCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEE
Q 004270          143 CIMHPDTYLNKVIVGSQ-----EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHV  207 (764)
Q Consensus       143 ~~~~p~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~i  207 (764)
                      .+..|++  +.+++...     ++.|.+.|..+++.+.++.....+ . ++++|||++++++.          .++.|.+
T Consensus        38 ~~~~pd~--~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           38 EAPAPDA--RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCCT--TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eccCCCC--CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            3456787  78888866     579999999999999999865555 4 99999999888775          3578999


Q ss_pred             EEccCCceEEEEeccC------CCCEEEEEEeeCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270          208 HNVRYDEELVTFTHSM------RGAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~------~~~v~~l~fs~d~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      ||..+++.+.++..+.      ......++|+|||+ .++++.  .++.|.++|+.+++.+.++...  + . ...+...
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g  188 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTA  188 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEE
T ss_pred             EECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCC
Confidence            9999999998886532      12456799999999 555554  3689999999999999988621  1 1 2223334


Q ss_pred             CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC----CCCCe-eEEEe-cCCCEEEEEeCCCcEEEEEeecccc--ccc
Q 004270          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH----SAPPL-CIRFY-ANGRHILSAGQDRAFRLFSVIQDQQ--SRE  351 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h----~~~v~-~i~~~-~~~~~l~s~~~dg~i~i~d~~~~~~--~~~  351 (764)
                      .+.+++.+.||.+.+.++......   ......+    ..++. ...|. ++|++++ .+.+|.+.+.|+.....  ...
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v---~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTP---EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCC---EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred             CceeEEECCCCCEEEEECCCCCeE---EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence            456677778888888876552211   1111111    11221 24665 5775544 55688999999865432  111


Q ss_pred             ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (764)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (764)
                      +..........                         .                |                 .......++
T Consensus       265 ~~~~~~~~~~~-------------------------g----------------~-----------------~p~g~q~~a  286 (386)
T 3sjl_D          265 VEALTEAERAD-------------------------G----------------W-----------------RPGGWQQVA  286 (386)
T ss_dssp             EESSCHHHHHT-------------------------T----------------E-----------------EECSSSCEE
T ss_pred             eeccccccccc-------------------------c----------------c-----------------cCCCcceee
Confidence            10000000000                         0                0                 012333567


Q ss_pred             EccCCCEEEEEec----------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEE-eCCCeEE
Q 004270          432 ISACGNFAVLGTA----------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIK  499 (764)
Q Consensus       432 ~s~~g~~l~~g~~----------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~~dg~v~  499 (764)
                      ++++++.+++...          .+.|.++|+.+++.+..+.         -...+.++++++|++ +|+++ ..++.|.
T Consensus       287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---------vg~~~~~lavs~D~~~~ly~tn~~~~~Vs  357 (386)
T 3sjl_D          287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------MGHEIDSINVSQDEKPLLYALSTGDKTLY  357 (386)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------EEEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred             ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---------CCCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence            7899999888754          2579999999999988875         223678999999996 66665 4589999


Q ss_pred             EEECCCCCeeeeEecCcceEEEEEeec
Q 004270          500 VWDFKGRDLKSRWEVGCSLVKIVYHRV  526 (764)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~  526 (764)
                      ++|..+++.+.++........|.+++|
T Consensus       358 ViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          358 IHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEECCCCcEEEEecCCCCCceeEECCc
Confidence            999999999999998888888888776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.68  E-value=8.6e-11  Score=134.66  Aligned_cols=509  Identities=11%  Similarity=0.081  Sum_probs=309.7

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc---ceEEEEEeCCe-EEEEECCeEEEEecCce-EEEec-cc-ccc-eE
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK---KIRALASYRDY-TFAAYGNHIAVVKRAHQ-VATWS-RH-SAK-VN   97 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~I~~~~~~~~~-~~~a~g~~i~vw~~~~~-~~~~~-~h-~~~-v~   97 (764)
                      ...+-+++. +-+..||..+.+..........   .|.+++..+++ .++++...|..|+..+. ...+. ++ ... |.
T Consensus        98 ~g~lWigT~-~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~  176 (795)
T 4a2l_A           98 QGRVWIGTR-DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIA  176 (795)
T ss_dssp             TSCEEEEES-SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSCHHHHTCCE
T ss_pred             CCCEEEEeC-CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEECCceEEEECCCCEEEeccCCCCCCcceE
Confidence            334444444 4589999988776554321111   18899888775 77888877999997543 22222 11 123 88


Q ss_pred             EEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270           98 LLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (764)
Q Consensus        98 ~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  176 (764)
                      ++..+ ...|..++.++.+..|+..+++....  .. ......+..+...+++   .+.+|+.++-|..||..+++....
T Consensus       177 ~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~--~~-~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          177 STLYRQGDQIYIGTSTDGLYTYSITQKTFEKV--IP-ILGTKQIQAILQQSPT---RIWVATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             EEEEEETTEEEEEESSSCEEEEETTTCCEEEC--C-----CCCEEEEEEEETT---EEEEEEBSSCEEEEETTTTEEEEE
T ss_pred             EEEECCCCCEEEEECCCCEEEEeCCCCeEEEe--cC-CCCCCeeEEEEEcCCC---CEEEEECCCCeEEEeCCCCeEEEe
Confidence            88774 45666677666699999877654211  00 0112333344444544   677787665599999887765443


Q ss_pred             EcC-------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEE
Q 004270          177 FKG-------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       177 ~~~-------h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~s  242 (764)
                      ...       ....|.++...++|.+ .+|+.+ -|.+||..+++.. .+...       ....|.++...++|.  |..
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWi  325 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGG--MWL  325 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSC--EEE
T ss_pred             ecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcC--EEE
Confidence            221       1457999999988864 455655 5889998766543 33211       135799999999887  667


Q ss_pred             EeCCCcEEEEECCCceeeeeee-----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec------c
Q 004270          243 GASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------S  311 (764)
Q Consensus       243 g~~dg~i~iwd~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~------~  311 (764)
                      |+.++-|..|+..++.......     .-....|.++...+++. |..|+.++-|..|+....  ........      .
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ--RFTSYTLQEDESARG  402 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC--CEEEECCC------C
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC--cEEEEecCCCCcccC
Confidence            8877889999876654322211     01235688998888776 455666767888865433  11111100      0


Q ss_pred             CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      .....|.++...++++.|..|+.++-|..++..+++.... ..                                     
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~-~~-------------------------------------  444 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF-NQ-------------------------------------  444 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE-CT-------------------------------------
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe-ec-------------------------------------
Confidence            1235688888888887566677766688888654321110 00                                     


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                                      .          ........|.++...++|++.+ |+. +.+.+|+..++........  .....
T Consensus       445 ----------------~----------~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~--~~~~~  494 (795)
T 4a2l_A          445 ----------------R----------NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKE--KDGTP  494 (795)
T ss_dssp             ----------------T----------TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBC--TTCCB
T ss_pred             ----------------C----------CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccc--ccccc
Confidence                            0          0001225788888888887554 444 4588899877654322110  00001


Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--------cCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d  543 (764)
                      .....|.++..+++|++.+...  +-|..||..+++.  .+.        ....|.++...++|.+.+.. .+ -+..||
T Consensus       495 ~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d  568 (795)
T 4a2l_A          495 VVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFN  568 (795)
T ss_dssp             CCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEE
T ss_pred             cCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeEC
Confidence            2346799999999998666554  5578888876654  222        12467888888888765544 44 688899


Q ss_pred             ccCCeEEEEee---c-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-----c--eEEEEEcCCCCe
Q 004270          544 VVALRMVRKFE---G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-----S--ITALSLSPNMDV  612 (764)
Q Consensus       544 ~~~~~~~~~~~---~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~--v~~l~~sp~g~~  612 (764)
                      ..+++... +.   + ....|.++...++|++.+++ . +-|..||..+++ +..+....     .  ..++...++|.+
T Consensus       569 ~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l  644 (795)
T 4a2l_A          569 EKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQM  644 (795)
T ss_dssp             TTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCE
T ss_pred             CCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeE
Confidence            88775443 32   1 13468899999999877755 3 448889987654 34443222     1  256777888876


Q ss_pred             EEEEEeCCCeEEEEeccc
Q 004270          613 LATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       613 lat~~~d~~~i~lW~~~~  630 (764)
                      ++. +.+  ++..++.+.
T Consensus       645 ~~g-~~~--Gl~~~~p~~  659 (795)
T 4a2l_A          645 YFG-GIN--GITTFRPEL  659 (795)
T ss_dssp             EEE-ETT--EEEEECGGG
T ss_pred             EEe-cCC--ceEEEcHHH
Confidence            654 444  377776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.68  E-value=7.2e-14  Score=140.70  Aligned_cols=307  Identities=12%  Similarity=0.068  Sum_probs=207.5

Q ss_pred             EEEcCCCCEEEEEEc-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEE
Q 004270          187 CVSSPALDVVAVGCS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIW  252 (764)
Q Consensus       187 ~~~sp~~~~la~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iw  252 (764)
                      ....|+++.+.+...     ++.|.+.|..+++.+.++..+ ..+ . ++++|||+.++++..         .++.|.+|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            456789999888876     679999999999999999876 444 4 999999995444432         36789999


Q ss_pred             ECCCceeeeeeeccc------ccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          253 NLEKRRLQSVIREAH------DNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       253 d~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      |..+++.+..+..+.      ......+.|+|||++++.+..  ++.|.++|..+.    +.+..+....   ....+..
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~----~vv~tI~v~g---~~~~~P~  187 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPD---CYHIFPT  187 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS---EEEEEEE
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC----cEEEEEECCC---cceeecC
Confidence            999999988886322      225678999999998888764  689999988776    4554442211   1222333


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      ..+.+++.+.||.+.+.++........ ..                                                  
T Consensus       188 g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~--------------------------------------------------  216 (386)
T 3sjl_D          188 APDTFFMHCRDGSLAKVAFGTEGTPEI-TH--------------------------------------------------  216 (386)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEE-EE--------------------------------------------------
T ss_pred             CCceeEEECCCCCEEEEECCCCCeEEE-ee--------------------------------------------------
Confidence            556777888899988888765221100 00                                                  


Q ss_pred             EEccceeecceeecCCCCCCCCe-EEEEE-ccCCCEEEEEecCCcEEEEECcCCcc--cceecCccc--cccccccCcEE
Q 004270          405 WRLQNFVLGEHILRPCPENPTAV-KACTI-SACGNFAVLGTAGGWIERFNLQSGIS--RGSYLDMSE--RSNYAHNGEVV  478 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~~g~~l~~g~~~g~i~i~~~~~~~~--~~~~~~~~~--~~~~~h~~~v~  478 (764)
                               ...+..   ....+ ....| .++|++++ .+.+|.|+++|+.++..  ...+.....  ....-......
T Consensus       217 ---------~~~~~~---~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q  283 (386)
T 3sjl_D          217 ---------TEVFHP---EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  283 (386)
T ss_dssp             ---------CCCCSC---TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             ---------cceecc---ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence                     000000   00111 11244 36775555 55689999999976642  221110000  00001122334


Q ss_pred             EEEECCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccC
Q 004270          479 GVACDSTNTLMISAGY----------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVA  546 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~  546 (764)
                      .++++++++.++....          ...|.+.|+.+++.+..+.....+..+++++|++ +|++.. .++.|.++|..+
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            5777899888877643          2579999999999999999998999999999997 666654 489999999999


Q ss_pred             CeEEEEeecCCCCeeEEEEcCC
Q 004270          547 LRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       547 ~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      ++.++++..- +.-+.|.+++|
T Consensus       364 ~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          364 GEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             CCEEEEECCC-CSSCCEEEECC
T ss_pred             CcEEEEecCC-CCCceeEECCc
Confidence            9999998743 34466777776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=2.1e-14  Score=162.48  Aligned_cols=279  Identities=7%  Similarity=-0.031  Sum_probs=189.7

Q ss_pred             cCCCEEEEEcCC-C--cEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEEeCCC-----cEEEEEeec
Q 004270          278 ANEPVLMSASAD-N--SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQ  345 (764)
Q Consensus       278 ~~~~~l~s~~~d-~--~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~  345 (764)
                      |+|++++....+ +  .-.+|..+...+..+.+...    .+|...+..++|+|||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            788877655433 2  23567766544444433211    23444678899999999998766433     788888866


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      ++......                                                                .     ..
T Consensus       161 g~~~~~~~----------------------------------------------------------------~-----~~  171 (710)
T 2xdw_A          161 AKELPDVL----------------------------------------------------------------E-----RV  171 (710)
T ss_dssp             TEEEEEEE----------------------------------------------------------------E-----EE
T ss_pred             CCCCcccc----------------------------------------------------------------c-----Cc
Confidence            54322100                                                                0     01


Q ss_pred             CeEEEEEccCCCEEEEEecCCc----------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          426 AVKACTISACGNFAVLGTAGGW----------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~----------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                      .+..++|+|||+.|+.+..++.                |++|++.++.....+..    ....|...+.++.|+|||++|
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~----~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA----EFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSCEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe----ccCCCCeEEEEEEEcCCCCEE
Confidence            2456899999999999988765                99999988764322210    001355668899999999999


Q ss_pred             EEEeC-----CCeEEEEECCC------CC-eeeeEecC-cceEEEEEeecCCEEEEEeCC----CeEEEEEccCCe--EE
Q 004270          490 ISAGY-----HGDIKVWDFKG------RD-LKSRWEVG-CSLVKIVYHRVNGLLATVADD----LVIRLFDVVALR--MV  550 (764)
Q Consensus       490 ~s~~~-----dg~v~iwd~~~------~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~d----~~i~v~d~~~~~--~~  550 (764)
                      +.++.     +..|++||+.+      +. ....+..+ ..+. ..++++|+.|+..+..    +.|.+||+.++.  ..
T Consensus       248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            88765     56899999986      43 34444443 3343 3589999988877653    369999998774  23


Q ss_pred             EEeecCCC--CeeEEEEcCCCcEEEEEeCCCc--EEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCC---Ce
Q 004270          551 RKFEGHTD--RITDFCFSEDGKWLLSSGMDGS--LRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ---NG  622 (764)
Q Consensus       551 ~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~---~~  622 (764)
                      ..+..|..  .+..++|++++.++++...|+.  |.+||+.+|+.+..+..+. .+.+++++|++..++....+.   ..
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  406 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI  406 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence            45555544  6888999988888888888884  6667877888877777654 388999999998776554331   26


Q ss_pred             EEEEeccc
Q 004270          623 VYLWVNRC  630 (764)
Q Consensus       623 i~lW~~~~  630 (764)
                      |++|++.+
T Consensus       407 i~~~d~~t  414 (710)
T 2xdw_A          407 IYHCDLTK  414 (710)
T ss_dssp             EEEEETTS
T ss_pred             EEEEECCC
Confidence            99999753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=2.7e-14  Score=161.68  Aligned_cols=284  Identities=13%  Similarity=0.089  Sum_probs=180.4

Q ss_pred             CCCCEEEEEEcCC-----eEEEEEccCCceEEEEec-----cCCCCEEEEEEeeCCCCEEEEEeC-CC----cEEEEECC
Q 004270          191 PALDVVAVGCSDG-----KIHVHNVRYDEELVTFTH-----SMRGAVTALAFSSDGQPLLASGAS-SG----VISIWNLE  255 (764)
Q Consensus       191 p~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~-----~~~~~v~~l~fs~d~~~~l~sg~~-dg----~i~iwd~~  255 (764)
                      |+|++++....++     .+.+.+...++....+..     .+...+..++|||||+ +|+.+.. +|    .|++||+.
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECC
Confidence            7788777654331     334444434443222221     1223588999999999 6665543 33    89999999


Q ss_pred             CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc----------------EEEEEecCCCCCceeeEeccCCCCCCee
Q 004270          256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS----------------IKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~----------------i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (764)
                      +++......  ....+..++|+|||+.|+.++.++.                |++|++.+......++.....|...+..
T Consensus       160 tg~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          160 GAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            998776443  2233778999999999999888766                8889886553222344343445666789


Q ss_pred             EEEecCCCEEEEEeC-----CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          320 IRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       320 i~~~~~~~~l~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      +.|+|||++|+..+.     +..+++||+.+...  ...                                         
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~~-----------------------------------------  274 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN--GIT-----------------------------------------  274 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS--SSC-----------------------------------------
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECccccc--ccC-----------------------------------------
Confidence            999999999987764     34556665533000  000                                         


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAH  473 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h  473 (764)
                                                                                   +. ....+.        .+
T Consensus       275 -------------------------------------------------------------~~~~~~~l~--------~~  285 (710)
T 2xdw_A          275 -------------------------------------------------------------GILKWVKLI--------DN  285 (710)
T ss_dssp             -------------------------------------------------------------SSCCCEEEE--------CS
T ss_pred             -------------------------------------------------------------CccceEEee--------CC
Confidence                                                                         00 000000        12


Q ss_pred             cCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCCe--eeeE-ecCc--ceEEEEEeecCCEEEEEeCCCe--EEEE
Q 004270          474 NGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDL--KSRW-EVGC--SLVKIVYHRVNGLLATVADDLV--IRLF  542 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~--~~~~-~~~~--~i~~~~~s~~~~~la~~~~d~~--i~v~  542 (764)
                      ...+.. .|+++|+.|+..+.    .+.|.+||+.++..  ...+ .+..  .+..+++++++.++++...++.  |++|
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence            222222 35566666555443    23588888877642  2333 3322  5778888877778888888884  5667


Q ss_pred             EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE-e---CCCcEEEEEcCccc
Q 004270          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-G---MDGSLRIWDVILAR  590 (764)
Q Consensus       543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s---~dg~i~iwd~~~~~  590 (764)
                      |+.+++.+..+..+.+.+..++++|+++.++.. +   ..++|+.||+.+++
T Consensus       365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            776788888888888889999999999766633 2   35789999999887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=5.2e-13  Score=133.83  Aligned_cols=280  Identities=13%  Similarity=0.085  Sum_probs=196.4

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ...+.++++.++|. ++++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+   +.
T Consensus        14 ~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~   88 (299)
T 2z2n_A           14 DTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK---GI   88 (299)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred             CCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC---Cc
Confidence            45799999999998 66665557899999988 554433222345679999999999988887778888888654   21


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (764)
                      .... ........+..+++.++|+.+++...++.+..|+. ++... .+                               
T Consensus        89 ~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~-------------------------------  134 (299)
T 2z2n_A           89 IKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY-------------------------------  134 (299)
T ss_dssp             EEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-------------------------------
T ss_pred             EEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-------------------------------
Confidence            1111 12234567889999999988777777788888876 22111 00                               


Q ss_pred             cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (764)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~  463 (764)
                                            .             .......+..++++++|+..++...++.|..|+. ++.......
T Consensus       135 ----------------------~-------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  178 (299)
T 2z2n_A          135 ----------------------E-------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI  178 (299)
T ss_dssp             ----------------------E-------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             ----------------------c-------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC
Confidence                                  0             0011256789999999988887777889999998 655443211


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEE
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                             ..+...+.++++++++++.++...++.|.+||. +++... +...   ..+..++++++|+++++...++.|.
T Consensus       179 -------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  249 (299)
T 2z2n_A          179 -------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIG  249 (299)
T ss_dssp             -------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred             -------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEE
Confidence                   134456889999999997777767889999998 665433 3222   6788999999998777666789999


Q ss_pred             EEEccCCeEEEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270          541 LFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (764)
Q Consensus       541 v~d~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  590 (764)
                      .||. +++.... +..+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus       250 ~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          250 RLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            9998 4543322 3345577999999 9998777665 5667778876553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=3.3e-14  Score=142.39  Aligned_cols=238  Identities=8%  Similarity=-0.019  Sum_probs=170.5

Q ss_pred             cCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270          311 SGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (764)
                      ..+.....+++|+|+++ .++++..++.|..|+...+  ...+                                     
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-------------------------------------   64 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-------------------------------------   64 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-------------------------------------
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-------------------------------------
Confidence            34556678999999998 6777778889999987543  1111                                     


Q ss_pred             cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                      .               .+...+.+++++++|+++++...++.|.+||..++.........    
T Consensus        65 ----------------~---------------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~----  109 (296)
T 3e5z_A           65 ----------------M---------------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF----  109 (296)
T ss_dssp             ----------------E---------------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE----
T ss_pred             ----------------E---------------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc----
Confidence                            0               12256889999999998877777789999999887654332100    


Q ss_pred             cccccCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270          470 NYAHNGEVVGVACDSTNTLMISAGY-----------------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (764)
                      .......+..++++|+|+++++.+.                 .+.|..++.. ++.............++|+|+++.+++
T Consensus       110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~  188 (296)
T 3e5z_A          110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVS  188 (296)
T ss_dssp             TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred             CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEE
Confidence            0012235678999999998887431                 2355555544 444333334466789999999999877


Q ss_pred             EeCCCeEEEEEcc-CCeE---EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEE-c
Q 004270          533 VADDLVIRLFDVV-ALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL-S  607 (764)
Q Consensus       533 ~~~d~~i~v~d~~-~~~~---~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~-s  607 (764)
                      .+.++.|++|++. +++.   ...+..+...+..++++++|+++++.  ++.|.+||.. |+.+..+..+..+++++| +
T Consensus       189 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~  265 (296)
T 3e5z_A          189 DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGG  265 (296)
T ss_dssp             ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEES
T ss_pred             eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEEC
Confidence            7778999999997 5554   33444455667899999999977766  7889999976 888888887666999999 6


Q ss_pred             CCCCeEEEEEeCCCeEEEEec
Q 004270          608 PNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       608 p~g~~lat~~~d~~~i~lW~~  628 (764)
                      |+++.|.+++.++  ++-++.
T Consensus       266 ~d~~~L~v~t~~~--l~~~~~  284 (296)
T 3e5z_A          266 PEGRTLYMTVSTE--FWSIET  284 (296)
T ss_dssp             TTSCEEEEEETTE--EEEEEC
T ss_pred             CCCCEEEEEcCCe--EEEEEc
Confidence            8999999888764  544443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=1e-14  Score=164.52  Aligned_cols=278  Identities=7%  Similarity=-0.009  Sum_probs=188.9

Q ss_pred             ecCCCEEEEEcCCC---cEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEE-----eCCCcEEEEEee
Q 004270          277 FANEPVLMSASADN---SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSA-----GQDRAFRLFSVI  344 (764)
Q Consensus       277 ~~~~~~l~s~~~d~---~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~-----~~dg~i~i~d~~  344 (764)
                      +|+|.+++....++   .-.+|..+...+..+.+...    .+|...+..++|+|||++|+.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47888887766544   46778776554444444322    2455678899999999999843     334678999887


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      +++......                                                               +     ..
T Consensus       156 tg~~~~~~~---------------------------------------------------------------~-----~~  167 (695)
T 2bkl_A          156 SGEWSKVDV---------------------------------------------------------------I-----EG  167 (695)
T ss_dssp             TCCBCSSCC---------------------------------------------------------------B-----SC
T ss_pred             CCCCcCCcc---------------------------------------------------------------c-----Cc
Confidence            654320000                                                               0     00


Q ss_pred             CCeEEEEEccCCCEEEEEecCCc-------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGW-------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~-------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                      .....++|+|||+.|+.++.+..             |++|++.++.....+..    ....|...+.++.|+|+|++|+.
T Consensus       168 ~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~----~~~~~~~~~~~~~~SpDG~~l~~  243 (695)
T 2bkl_A          168 GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH----ERTGDPTTFLQSDLSRDGKYLFV  243 (695)
T ss_dssp             CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE----CCCCCTTCEEEEEECTTSCCEEE
T ss_pred             ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE----ecCCCCEEEEEEEECCCCCEEEE
Confidence            11256899999999999988765             99999998764322110    01245567899999999999988


Q ss_pred             EeCCC----eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeE---EEEeecC-CCC
Q 004270          492 AGYHG----DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM---VRKFEGH-TDR  559 (764)
Q Consensus       492 ~~~dg----~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~---~~~~~~h-~~~  559 (764)
                      ++.++    .|.+|+..+++..........+....+ ++|+ +++.+.    ++.|.+||+.+++.   ...+..+ ...
T Consensus       244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  321 (695)
T 2bkl_A          244 YILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS  321 (695)
T ss_dssp             EEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred             EEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence            87666    677777666665555555555566655 6777 555443    58999999987753   3333333 456


Q ss_pred             eeEEEEcCCCcEEEEEeCCCcEEEEEcC-ccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC----CCeEEEEeccc
Q 004270          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVD----QNGVYLWVNRC  630 (764)
Q Consensus       560 i~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d----~~~i~lW~~~~  630 (764)
                      +..++|+ ++.++++...|+..++|.+. +|+.+..+..+  ..+..++++|+++.|+....+    + .|++|++.+
T Consensus       322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~-~v~~~d~~~  397 (695)
T 2bkl_A          322 LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR-QIYKTSVST  397 (695)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE-EEEEEETTT
T ss_pred             EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC-EEEEEECCC
Confidence            8889998 77888899999998888665 46666666554  348889999999877755433    3 599999753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=1.1e-12  Score=131.34  Aligned_cols=283  Identities=12%  Similarity=0.058  Sum_probs=193.8

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      ..+...+.+++++++|++.++...++.|.+||.. ++.. .+. ......+.++++.++|. ++++...++.|..||.. 
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence            4456789999999999877766667899999988 5533 333 22346799999999998 77766667889999986 


Q ss_pred             ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          257 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      ++............+.++++.+++.+.++...++.|..|+. .  +... ......+...+..+++.++|+..++...++
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~--g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D--GKIR-EYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T--CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C--CCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            43322111124557899999999988888777888888865 2  2111 112233456788999999998777766677


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .|..|+. ++.... +                                                     .          
T Consensus       163 ~i~~~~~-~g~~~~-~-----------------------------------------------------~----------  177 (299)
T 2z2n_A          163 AIGRITE-SGDITE-F-----------------------------------------------------K----------  177 (299)
T ss_dssp             EEEEECT-TCCEEE-E-----------------------------------------------------E----------
T ss_pred             EEEEEcC-CCcEEE-e-----------------------------------------------------e----------
Confidence            8888886 322110 0                                                     0          


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                         .......+..++++++|++.++...++.|.+|+. ++.... +.      ...+...+.+++++++|+++++...++
T Consensus       178 ---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------~~~~~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          178 ---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK------IPTPNARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             ---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE------CSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             ---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE------CCCCCCCceeEEECCCCCEEEeccCCc
Confidence               0011256788999999997777667889999999 665432 21      123556789999999999777766788


Q ss_pred             eEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270          497 DIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~  548 (764)
                      .|..||. +++ +..+..   ...+.++++ +++.+.++.. .+.+..++.++++
T Consensus       247 ~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          247 KIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             eEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            9999998 443 333332   257888999 8777666554 6777777776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=1.2e-12  Score=134.25  Aligned_cols=280  Identities=12%  Similarity=0.006  Sum_probs=183.3

Q ss_pred             EEeeCCCCEEEEEeC--CC---cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEE
Q 004270          231 AFSSDGQPLLASGAS--SG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMW  295 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~--dg---~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw  295 (764)
                      ...|+++ .+++...  ..   .|.++|..+++.+..+..+ ..+  .++++||+++++.+.          .++.|.+|
T Consensus        27 ~~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           27 APGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             cCCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence            3446776 4555442  22   8899999999998887733 233  999999999988875          36789999


Q ss_pred             EecCCCCCceeeEeccC-------CCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeeccccccc-ccchhhhHHHhhcc
Q 004270          296 IFDTTDGDPRLLRFRSG-------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLK  365 (764)
Q Consensus       296 ~~~~~~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~  365 (764)
                      |..+..    .+....-       +......++++|||++|+.+..  ++.|.++| .+++.... +..           
T Consensus       103 D~~t~~----~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----------  166 (373)
T 2mad_H          103 DPVTFL----PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----------  166 (373)
T ss_pred             ECCCCc----EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------
Confidence            886542    2222111       1234668999999999998874  47799999 76654332 211           


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEec
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA  444 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~  444 (764)
                                                                                   ..++.+.|++ +.+++.+.
T Consensus       167 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~  185 (373)
T 2mad_H          167 -------------------------------------------------------------PTCYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             -------------------------------------------------------------CceEEEEeCCCceEEEEcC
Confidence                                                                         0113334444 34455566


Q ss_pred             CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEec--------
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEV--------  514 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~--------  514 (764)
                      +|.+.+++. ++...........  ..+...-.....+.+++..++..+.++.+.+.|+.+..  .+..+..        
T Consensus       186 dg~~~~vd~-~g~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          186 QGGLAKTDH-AGGAAGAGLVGAM--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             CCCEEEEEC-CCcEEEEEecccc--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            788888888 6655422110000  00111112234556666555545577899999987653  2233321        


Q ss_pred             ---CcceEEEEEeecCCEEEEEeC----------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEEe-CCC
Q 004270          515 ---GCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDG  579 (764)
Q Consensus       515 ---~~~i~~~~~s~~~~~la~~~~----------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s-~dg  579 (764)
                         ......++++|+++.+.++..          ++.|.++|..+++.+.++... .....++|+|||+ .++++. .++
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCC
Confidence               123445789999998887654          358999999999999998643 3578999999999 677776 589


Q ss_pred             cEEEEEcCccceEEEE
Q 004270          580 SLRIWDVILARQIDAI  595 (764)
Q Consensus       580 ~i~iwd~~~~~~~~~~  595 (764)
                      .|.++|+.+++.+..+
T Consensus       342 ~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          342 VLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCCEEeee
Confidence            9999999999999884

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=9.5e-14  Score=138.99  Aligned_cols=253  Identities=11%  Similarity=0.084  Sum_probs=174.9

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~  250 (764)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+ ...+.+++++++|+ ++++...++.|.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~l~~~~dg~-l~v~~~~~~~i~   93 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP-SHHQNGHCLNKQGH-LIACSHGLRRLE   93 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS-CSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC-CCCcceeeECCCCc-EEEEecCCCeEE
Confidence            33444555566788999999998 7788888999999999877  5555544 57799999999998 777766678999


Q ss_pred             EEECCCceeeeeeec---ccccCeeEEEEecCCCEEEEEcCC---------------CcEEEEEecCCCCCceeeEeccC
Q 004270          251 IWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASAD---------------NSIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       251 iwd~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                      +||..+++.......   .....+..+++.|+|+++++.+..               +.-.+|.++.. +.   ......
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~  169 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIR  169 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEEC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeec
Confidence            999988875544321   112356789999999988873211               12367766654 22   222345


Q ss_pred             CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      +...+..++|+|+++.+++.+.++.|.+|++...... ..                                        
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~----------------------------------------  209 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ----------------------------------------  209 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE----------------------------------------
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC----------------------------------------
Confidence            6667789999999998877777889999998521110 00                                        


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                                            ...+   ......+..++++++|++.++.  ++.|.+|+.. ++....+.        
T Consensus       210 ----------------------~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~--------  253 (296)
T 3e5z_A          210 ----------------------GVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL--------  253 (296)
T ss_dssp             ----------------------EEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE--------
T ss_pred             ----------------------CeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE--------
Confidence                                  0000   0112445678999999866655  8899999987 66655553        


Q ss_pred             cccCcEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          472 AHNGEVVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       472 ~h~~~v~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      .+.. +.+++| .++++.|+.++.++ +..++.++.++.+
T Consensus       254 ~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~  291 (296)
T 3e5z_A          254 TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH  291 (296)
T ss_dssp             CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred             CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence            4555 889999 68988888888764 4455666655443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=2e-12  Score=132.71  Aligned_cols=286  Identities=6%  Similarity=-0.069  Sum_probs=190.3

Q ss_pred             EeCCEEEEEec--CC---cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe----------CCCcEEE
Q 004270          101 LFGEHILSIDI--DG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS----------QEGSLQL  165 (764)
Q Consensus       101 ~~g~~l~s~~~--dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~----------~dg~i~i  165 (764)
                      ++++++++...  .+   +|.++|..+++.    +.++....  ...++++|++  ++++++.          .++.|.+
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~----~~~i~~g~--~p~i~~spDg--~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSI----LGHVNGGF--LPNPVAAHSG--SEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeE----EEEecCCC--CCCeEECCCC--CEEEEEeccccccccCCCCCeEEE
Confidence            46777777764  22   789999998887    55555433  3388999999  7888886          3678999


Q ss_pred             EeCCCCeEEEEEcCC-------CCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEE-EeccCCCCEEEEEEeeC
Q 004270          166 WNISTKKKLYEFKGW-------GSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSD  235 (764)
Q Consensus       166 wd~~~~~~~~~~~~h-------~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~d  235 (764)
                      ||..+++.+.++...       ...-..++++|||++|+++..  ++.|.++| .+++.+.. +...  +   ++.+.|+
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~---~~~~~~~  175 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--T---CYHIHPG  175 (373)
T ss_pred             EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--c---eEEEEeC
Confidence            999999988877532       123458999999999999874  47899999 99998877 6543  2   2556677


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeec----ccccC-eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270          236 GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~h~~~-v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      +...+++.+.||.+.++|. +++.......    ....+ .....+.+++..++..+.++.+.+.|+....  ...+..+
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~--~~v~~~~  252 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG--ATNKAPI  252 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc--ceEeeee
Confidence            7657777888999999999 8776643220    01111 1234566666555544566777777654321  1111111


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      .-.........|.|                                                                  
T Consensus       253 ~~~~~~~~~~~~~p------------------------------------------------------------------  266 (373)
T 2mad_H          253 DALSGGRKADTWRP------------------------------------------------------------------  266 (373)
T ss_pred             eecCCcccccceec------------------------------------------------------------------
Confidence            00000000111111                                                                  


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec----------CCcEEEEECcCCcccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----------GGWIERFNLQSGISRG  460 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----------~g~i~i~~~~~~~~~~  460 (764)
                                                        .....++++++++.++++..          .+.|.++|..+++...
T Consensus       267 ----------------------------------~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          267 ----------------------------------GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             ----------------------------------CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence                                              22233456666666666543          3579999999988877


Q ss_pred             eecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeE
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  512 (764)
                      .+.         -.....+++|+|||+ +++++. .++.|.++|..+++.+..+
T Consensus       313 ~i~---------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          313 QIS---------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEE---------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            764         223578999999999 777777 5899999999999988873

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=1.9e-13  Score=134.10  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  230 (764)
                      +.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|++++  +.++.|..||. +++.+.++..+....+.++
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            579999999999999999999999998876 5789999999999888  45788999999 8999999987544578999


Q ss_pred             EEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeec-----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270          231 AFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       231 ~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (764)
                      .+.++|+ ++++.+. ++.|..+|. +++.+..+..     .+......+++.++++++++...++.|..||.+ +    
T Consensus        83 ~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G----  155 (276)
T 3no2_A           83 RILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G----  155 (276)
T ss_dssp             EECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S----
T ss_pred             EECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C----
Confidence            9999999 7777776 778888885 6776665541     122345667889999999999999999999765 3    


Q ss_pred             eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (764)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~  351 (764)
                      +.+..+... ..+.++...++|+.+++++.++.|..+|..+++...+
T Consensus       156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence            344444333 4567788889999999988888899998776655444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=1.1e-13  Score=156.06  Aligned_cols=278  Identities=9%  Similarity=-0.025  Sum_probs=179.4

Q ss_pred             eeCCCCEEEEEeCCC----cEEEEECCCceeeeeee-----cccccCeeEEEEecCCCEEEE-----EcCCCcEEEEEec
Q 004270          233 SSDGQPLLASGASSG----VISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFD  298 (764)
Q Consensus       233 s~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s-----~~~d~~i~vw~~~  298 (764)
                      +|+|+++..+....+    .|.+.+...+.....+.     .+|...+.+++|||||++|+.     |+.+..|++||++
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            478883443433332    34555554554333322     135557899999999999883     4445789999987


Q ss_pred             CCCCCceeeEeccCCCCC--CeeEEEecCCCEEEEEeCCCc-------------EEEEEeecccccccccchhhhHHHhh
Q 004270          299 TTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRA-------------FRLFSVIQDQQSRELSQRHVAKRARK  363 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~  363 (764)
                      ++..    +.  ..+...  ...++|+|||+.|+.++.|..             |++|++.++                 
T Consensus       156 tg~~----~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~-----------------  212 (695)
T 2bkl_A          156 SGEW----SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTE-----------------  212 (695)
T ss_dssp             TCCB----CS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSC-----------------
T ss_pred             CCCC----cC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCC-----------------
Confidence            7632    10  111122  268999999999999988764             555554332                 


Q ss_pred             ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (764)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (764)
                                                                     ......+.....+...+..+.+||||+++++++
T Consensus       213 -----------------------------------------------~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          213 -----------------------------------------------PSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             -----------------------------------------------GGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred             -----------------------------------------------chhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence                                                           211111222223446788999999999999887


Q ss_pred             cCC----cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCe---eeeEe
Q 004270          444 AGG----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDL---KSRWE  513 (764)
Q Consensus       444 ~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~---~~~~~  513 (764)
                      .++    .|++++..++.... +.        .+...+....+ +++++++.+.   .++.|.+||+.+++.   ...+.
T Consensus       246 ~~~~~~~~l~~~~~~~~~~~~-l~--------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  315 (695)
T 2bkl_A          246 LRGWSENDVYWKRPGEKDFRL-LV--------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP  315 (695)
T ss_dssp             EETTTEEEEEEECTTCSSCEE-EE--------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred             eCCCCceEEEEEcCCCCceEE-ee--------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence            766    67777665554332 22        44445555556 5566444444   258899999987753   33333


Q ss_pred             c--CcceEEEEEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecC-CCCeeEEEEcCCCcEEEEE----eCCCcEEEEE
Q 004270          514 V--GCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGH-TDRITDFCFSEDGKWLLSS----GMDGSLRIWD  585 (764)
Q Consensus       514 ~--~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~----s~dg~i~iwd  585 (764)
                      +  ...+..++++ ++.++++...|+..++|.+. +++..+.+..+ .+.+..++++||++.|+..    ...++|++||
T Consensus       316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d  394 (695)
T 2bkl_A          316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS  394 (695)
T ss_dssp             CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            3  2457778888 67788888999988888665 46666677655 6678889999999877633    2357899999


Q ss_pred             cCccce
Q 004270          586 VILARQ  591 (764)
Q Consensus       586 ~~~~~~  591 (764)
                      +.+++.
T Consensus       395 ~~~g~~  400 (695)
T 2bkl_A          395 VSTGKS  400 (695)
T ss_dssp             TTTCCE
T ss_pred             CCCCcE
Confidence            998874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=2e-13  Score=133.99  Aligned_cols=243  Identities=9%  Similarity=0.080  Sum_probs=180.9

Q ss_pred             CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270          279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (764)
Q Consensus       279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  357 (764)
                      .+++|++++.++.|.+||..++    +.+..+..+. ..+.++.++|+|+.++  +.++.+..||. +++..        
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~--------   68 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL--------   68 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE--------
T ss_pred             CCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE--------
Confidence            3568999999999999987555    4555555555 5789999999999888  34677888886 44332        


Q ss_pred             hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (764)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (764)
                                                                     |.+..            .....+.++.+.++|+
T Consensus        69 -----------------------------------------------W~~~~------------~~~~~~~~~~~~~dG~   89 (276)
T 3no2_A           69 -----------------------------------------------WNIAA------------PAGCEMQTARILPDGN   89 (276)
T ss_dssp             -----------------------------------------------EEEEC------------CTTCEEEEEEECTTSC
T ss_pred             -----------------------------------------------EEEcC------------CCCccccccEECCCCC
Confidence                                                           22221            1113567888999999


Q ss_pred             EEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270          438 FAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (764)
Q Consensus       438 ~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  516 (764)
                      ++++.+. ++.+..++. +|+.+..+.....  ...+......+++.++|+++++...++.|..||.+ ++.+..+....
T Consensus        90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~  165 (276)
T 3no2_A           90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG  165 (276)
T ss_dssp             EEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred             EEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence            9999887 888888886 6666555532110  01222345566789999999999999999999998 99999998877


Q ss_pred             ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC------CCeeEEEEcCCCcEEEEEeCC--------CcEE
Q 004270          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT------DRITDFCFSEDGKWLLSSGMD--------GSLR  582 (764)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~------~~i~~l~~s~dg~~l~s~s~d--------g~i~  582 (764)
                      .+..+...+++++++++..++.|..+|..+++.+.++..+.      ..+..++..++|..+++....        +..+
T Consensus       166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~  245 (276)
T 3no2_A          166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQ  245 (276)
T ss_dssp             CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCS
T ss_pred             CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCce
Confidence            77788889999999999999999999999999999987432      237888999999988877421        2346


Q ss_pred             EEEc-CccceEEEEeeCC
Q 004270          583 IWDV-ILARQIDAIHVDV  599 (764)
Q Consensus       583 iwd~-~~~~~~~~~~~~~  599 (764)
                      ++++ ++|+.+..+....
T Consensus       246 ~~~~~~~g~~~W~~~~~~  263 (276)
T 3no2_A          246 LVEIDSEGKVVWQLNDKV  263 (276)
T ss_dssp             EEEECTTSBEEEEECCTT
T ss_pred             EEEECCCCCEEEEecCcc
Confidence            6666 5788877776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=5.3e-10  Score=127.86  Aligned_cols=512  Identities=11%  Similarity=0.055  Sum_probs=307.3

Q ss_pred             cCCeEEEEEEeCCeEEEEecCCCeEEEecCC--------CCcceEEEEEeCC-e-EEEEECC-eEEEEecCce-EEEecc
Q 004270           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQ--------LPKKIRALASYRD-Y-TFAAYGN-HIAVVKRAHQ-VATWSR   91 (764)
Q Consensus        24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--------~~~~I~~~~~~~~-~-~~~a~g~-~i~vw~~~~~-~~~~~~   91 (764)
                      ....++=+++.+ -+..||-.+.+.... +.        ....|.+|...++ . +++++.. .+..|+..+. ...+..
T Consensus        27 D~~G~lWigT~~-GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~  104 (781)
T 3v9f_A           27 DKQGFLWFATEE-GLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQY  104 (781)
T ss_dssp             CTTSCEEEEESS-CEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECC
T ss_pred             CCCCCEEEccCC-cCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeecc
Confidence            334555555554 477888776444322 21        1346999999886 4 7899987 7999997543 333311


Q ss_pred             --------cccceEEEEEeC---CEEEEEecCCcEEEEEccCCcccccceeeEe-cCCccccEEEEeCCCCCCEEEEEeC
Q 004270           92 --------HSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        92 --------h~~~v~~l~~~g---~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                              ....|.++..+.   ..|..++.++.+..+|..+++.......... .....+..+...+++   .|.+|+.
T Consensus       105 ~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lwigt~  181 (781)
T 3v9f_A          105 NPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDG---KLYIGHV  181 (781)
T ss_dssp             CTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETT---EEEEEET
T ss_pred             ccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCC---CEEEEec
Confidence                    123688888754   5677777566688899876654110000000 112223333344454   6788887


Q ss_pred             CCcEEEEeCCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec------cCCCC
Q 004270          160 EGSLQLWNISTKKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGA  226 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~  226 (764)
                      ++-|..||..+++...-..       .....|.++...+++.+. +|+.+ -+.+||..+++...-...      .....
T Consensus       182 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~  259 (781)
T 3v9f_A          182 EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSY  259 (781)
T ss_dssp             TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCC
T ss_pred             CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCce
Confidence            7569999988776543211       113568999998887654 45555 688999876653321111      11357


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-------------cccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------------EAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      |.++...++|.  |..|+..+-|.++|..+++......             ......|.++...++|. |-.|+.++-|.
T Consensus       260 i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~  336 (781)
T 3v9f_A          260 IFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN  336 (781)
T ss_dssp             EEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred             EEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence            99999888886  6667765678999987765432111             12345788998888775 55566566687


Q ss_pred             EEEecCCCCCceeeEe-------ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccc
Q 004270          294 MWIFDTTDGDPRLLRF-------RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~-------~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  366 (764)
                      .++....  .......       .......|.++...++|. |..|+.++-|..|+..+...... .             
T Consensus       337 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~-~-------------  399 (781)
T 3v9f_A          337 FISNAPP--TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN-K-------------  399 (781)
T ss_dssp             EECSSCC--SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------------
T ss_pred             EeCCCCC--cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc-c-------------
Confidence            7765432  1111110       011235678888877776 44556455588887543211100 0             


Q ss_pred             hhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004270          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  446 (764)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g  446 (764)
                                                                         .........|.++...++|++ .+|+.++
T Consensus       400 ---------------------------------------------------~~~~~~~~~v~~i~~d~~g~l-Wigt~~~  427 (781)
T 3v9f_A          400 ---------------------------------------------------ENRELLSNSVLCSLKDSEGNL-WFGTYLG  427 (781)
T ss_dssp             -------------------------------------------------------CCCSBEEEEEECTTSCE-EEEETTE
T ss_pred             ---------------------------------------------------CCCCCCCcceEEEEECCCCCE-EEEeccC
Confidence                                                               000012267888888887764 4577777


Q ss_pred             cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------CcceEE
Q 004270          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------GCSLVK  520 (764)
Q Consensus       447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~i~~  520 (764)
                      .+..++..++........      ......|.++..++++.+.+ ++. +-|..+|..+++.......      ...|.+
T Consensus       428 Gl~~~~~~~~~~~~~~~~------~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELE------KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             EEEEECSSSCEEEECCST------TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             CEEEEcCCCCcEEEeccC------CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence            799999877654322110      12346799999998887555 444 5688899887665433322      256888


Q ss_pred             EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe
Q 004270          521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  596 (764)
Q Consensus       521 ~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~  596 (764)
                      +...++|.+.+ |+.++-+..||..+++.. .+..    ....|.++...++|++.++.. +|.|..||..+++. ..+.
T Consensus       500 i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~  575 (781)
T 3v9f_A          500 IAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQ  575 (781)
T ss_dssp             EEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEEC
T ss_pred             EEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEcc
Confidence            88888777655 444444777888766543 3321    235689999999998766544 67558899877653 3333


Q ss_pred             e-----CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          597 V-----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       597 ~-----~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .     ...|.++...++|.+.+++ .+  +|..++.+
T Consensus       576 ~~~gl~~~~i~~i~~d~~g~lW~~t-~~--Gl~~~~~~  610 (781)
T 3v9f_A          576 RKEGLPNTHIRAISEDKNGNIWAST-NT--GISCYITS  610 (781)
T ss_dssp             GGGTCSCCCCCEEEECSSSCEEEEC-SS--CEEEEETT
T ss_pred             ccCCCCCceEEEEEECCCCCEEEEc-CC--ceEEEECC
Confidence            2     1248889999999876654 33  37777754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=1.5e-13  Score=135.59  Aligned_cols=241  Identities=7%  Similarity=-0.031  Sum_probs=171.1

Q ss_pred             CeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          270 AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       270 ~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      ...++++.+++++++ +.+.++.|.+|+.....    .......+...+.+++++++|+.+++.. ++.|.+|+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG----TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc----cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            678999999998776 54678889998654331    1111223445788999999998666555 88898888643221


Q ss_pred             cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (764)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (764)
                      . .+                                                                   .......+.
T Consensus       100 ~-~~-------------------------------------------------------------------~~~~~~~p~  111 (270)
T 1rwi_B          100 T-VL-------------------------------------------------------------------PFDGLNYPE  111 (270)
T ss_dssp             E-EC-------------------------------------------------------------------CCCSCSSEE
T ss_pred             e-ee-------------------------------------------------------------------ecCCcCCCc
Confidence            0 00                                                                   001125678


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCe
Q 004270          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  508 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~  508 (764)
                      .++++++|+.+++...++.|.+|+..+.......        ......+.+++++++++++++...++.|.+||..+...
T Consensus       112 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             ceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            9999999997777777899999976554332211        12334678899999999777777788999999887665


Q ss_pred             eeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          509 KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       509 ~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      ....... ..+..+++.++|.++++...++.|.+||..+.........+...+.+++++++|+++++...++.|+++++.
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            4433233 678899999999877777778999999987765443333344678999999999988888899999999988


Q ss_pred             ccce
Q 004270          588 LARQ  591 (764)
Q Consensus       588 ~~~~  591 (764)
                      ..+.
T Consensus       264 ~~~~  267 (270)
T 1rwi_B          264 EHHH  267 (270)
T ss_dssp             GGGS
T ss_pred             Cccc
Confidence            6654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.59  E-value=1.2e-12  Score=134.57  Aligned_cols=289  Identities=10%  Similarity=0.042  Sum_probs=196.6

Q ss_pred             CCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEEECCC
Q 004270          191 PALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEK  256 (764)
Q Consensus       191 p~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~  256 (764)
                      ++++.+.+....     +.|.++|..+++.+.++..+ ..+  .++++|||+.++++..         .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            567777776653     69999999999999999876 445  8999999995555432         467899999999


Q ss_pred             ceeeeeeecc------cccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-CC
Q 004270          257 RRLQSVIREA------HDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GR  327 (764)
Q Consensus       257 ~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~  327 (764)
                      ++.+..+..+      .......+.|+||+++++.+..  +++|.+.|..+.    +.+..+..-.    +....|+ .+
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----kvv~~I~v~g----~~~~~p~g~~  230 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----TFDRMLDVPD----CYHIFPASPT  230 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS----EEEEEEEETT
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----eEEEEEEcCC----ceeeccCCCc
Confidence            9998887632      1234568899999999998864  578999987766    4444433211    1334443 35


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      .+++.+.||.+.+.+...++......                                                 .+++.
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~-------------------------------------------------~~~~v  261 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNT-------------------------------------------------EVFHT  261 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEEC-------------------------------------------------CCCSC
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEee-------------------------------------------------eeecc
Confidence            66677778888877763322211000                                                 00000


Q ss_pred             cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc--ceecCc--cccccccccCcEEEEEEC
Q 004270          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR--GSYLDM--SERSNYAHNGEVVGVACD  483 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~--~~~~~~--~~~~~~~h~~~v~~l~~~  483 (764)
                      .              .......+.+++++..++.....|.+.+.|..++...  ..+...  ..............++++
T Consensus       262 ~--------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s  327 (426)
T 3c75_H          262 E--------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH  327 (426)
T ss_dssp             T--------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred             C--------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence            0              0011112467888888888888899999998655422  111100  000000011122236899


Q ss_pred             CCCCEEEEEeC----------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccCCeEEE
Q 004270          484 STNTLMISAGY----------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVR  551 (764)
Q Consensus       484 ~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~~~~~~  551 (764)
                      ++++.++....          ++.|.+.|..+.+.+.++........++|+||++ ++++.. .++.|.|+|+.+++.++
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence            99887776642          4579999999999999999888899999999999 888887 58999999999999998


Q ss_pred             Ee
Q 004270          552 KF  553 (764)
Q Consensus       552 ~~  553 (764)
                      ++
T Consensus       408 tI  409 (426)
T 3c75_H          408 SV  409 (426)
T ss_dssp             EE
T ss_pred             Ee
Confidence            87

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=3.5e-13  Score=132.88  Aligned_cols=196  Identities=7%  Similarity=-0.049  Sum_probs=144.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+.+++++++|+++++.. ++.|.+|+........ +.       ......+.+++++++++++++...++.|.+|+..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  137 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LP-------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG  137 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CC-------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-ee-------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECC
Confidence            4567789999999655555 8899999987654332 21       1233578999999999988887788999999765


Q ss_pred             CCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270          505 GRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (764)
Q Consensus       505 ~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i  583 (764)
                      +......... ...+..++++++|+++++...++.|.+||..+.........+...+..++++++|+++++...++.|.+
T Consensus       138 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  217 (270)
T ss_dssp             CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred             CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence            5443322222 246788999999997777777899999999877655444444467899999999988887777889999


Q ss_pred             EEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          584 WDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       584 wd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      ||............+ ..+.+++++++|+++++...++ .|++++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~-~v~~~~~~~  264 (270)
T 1rwi_B          218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND-RVVKLTSLE  264 (270)
T ss_dssp             ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT-EEEEECCCG
T ss_pred             EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC-EEEEEcCCC
Confidence            998755433222122 4589999999998777766666 699998764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=3.9e-09  Score=120.68  Aligned_cols=509  Identities=10%  Similarity=0.047  Sum_probs=301.6

Q ss_pred             EEEEEeCCeEEEEecCCCeEEEecCC-------CCcceEEEEEeC--C-eEEEEE-CCeEEEEecCc-eEEEecc-----
Q 004270           29 FVTVSVGKAFHIYNCAKLNLVLVGPQ-------LPKKIRALASYR--D-YTFAAY-GNHIAVVKRAH-QVATWSR-----   91 (764)
Q Consensus        29 ~~~~~~~~~i~iwd~~~~~~~~~~~~-------~~~~I~~~~~~~--~-~~~~a~-g~~i~vw~~~~-~~~~~~~-----   91 (764)
                      |-+++.++-+..||..+.+.......       ....|.+++...  + ..++++ ++.|..|+..+ ....+..     
T Consensus        80 lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~  159 (781)
T 3v9f_A           80 IWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPA  159 (781)
T ss_dssp             EEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred             EEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence            55566665799999998877654211       123689999887  5 577777 67799999643 3333321     


Q ss_pred             -cccceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccce---eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           92 -HSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPV---GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        92 -h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                       ....|.++..+ ...|..++.++.+..||..+++......   .........+..+...+++   .|.+|+.+ -|.+|
T Consensus       160 l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lwigt~~-Gl~~~  235 (781)
T 3v9f_A          160 LPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG---NIWIGTSK-GLALF  235 (781)
T ss_dssp             CSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC---CEEEEETT-EEEEE
T ss_pred             CCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC---CEEEEeCC-cHheE
Confidence             23457888775 5667777766568899987765411000   0001122334444444554   47777776 59999


Q ss_pred             eCCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-------c------cCCCC
Q 004270          167 NISTKKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-------H------SMRGA  226 (764)
Q Consensus       167 d~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-------~------~~~~~  226 (764)
                      |..+++......       .....|.++...++|. |.+|+..+-|.++|..+++......       .      -....
T Consensus       236 d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~  314 (781)
T 3v9f_A          236 NANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNAS  314 (781)
T ss_dssp             ETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSC
T ss_pred             CCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCe
Confidence            987776543221       1246799999988875 5567775668889987665322111       0      11357


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee--------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      |.++...++|.  |..|+.++-|..++..++.......        ......|.++...+++. |..|+.++-|..|+..
T Consensus       315 v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          315 ARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENG  391 (781)
T ss_dssp             EEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETT
T ss_pred             EEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECC
Confidence            99999988886  6677777889999987654332211        01235688888887775 4455555667777654


Q ss_pred             CCCCCceeeE-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          299 TTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       299 ~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      ...  ..... ........|.++...++|.. ..|+.++-+..++..+++.... .                        
T Consensus       392 ~~~--~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~-~------------------------  443 (781)
T 3v9f_A          392 KRV--AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQII-E------------------------  443 (781)
T ss_dssp             EEE--EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEEC-C------------------------
T ss_pred             CCe--EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEe-c------------------------
Confidence            321  01100 00123456778877777764 4466555577777543321100 0                        


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                                               ........|.++...++|+ +.+|+. +-+.+|+..++.
T Consensus       444 -----------------------------------------~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          444 -----------------------------------------LEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             -----------------------------------------STTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS
T ss_pred             -----------------------------------------cCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe
Confidence                                                     0001225688888888776 555666 568899988765


Q ss_pred             ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-----CcceEEEEEeecCCEEEE
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLAT  532 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~i~~~~~s~~~~~la~  532 (764)
                      .........   .......|.++..+++|.+.+. +.++-|..||..+++... +..     ...|.++...++|.+.+.
T Consensus       481 ~~~~~~~~~---~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          481 VIHHYDTSN---SQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             CCEEECTTT---SSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred             EEecccCcc---cccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE
Confidence            443221100   0112467999999999886554 443446778876654332 221     246788888887775554


Q ss_pred             EeCCCeEEEEEccCCeEEEEeec----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-------ce
Q 004270          533 VADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SI  601 (764)
Q Consensus       533 ~~~d~~i~v~d~~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~v  601 (764)
                       +.+|.+..||..+++.. .+..    ....|.++...++|++.++ +.+| |..++..+++ +..+....       ..
T Consensus       556 -T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~-~~~~~~~dGl~~~~f~~  630 (781)
T 3v9f_A          556 -TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKC-FYTYDHSNNIPQGSFIS  630 (781)
T ss_dssp             -ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTE-EEEECGGGTCCSSCEEE
T ss_pred             -ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCc-eEEecccCCcccccccc
Confidence             44666588888776543 3321    1246889999999987665 4455 7778876554 34443211       13


Q ss_pred             EEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          602 TALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       602 ~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      .++...++|.+++ ++.+|  +..++.+
T Consensus       631 ~~~~~~~~G~l~~-g~~~G--l~~f~p~  655 (781)
T 3v9f_A          631 GCVTKDHNGLIYF-GSING--LCFFNPD  655 (781)
T ss_dssp             EEEEECTTSCEEE-EETTE--EEEECSC
T ss_pred             CceEECCCCEEEE-ECCCc--eEEEChh
Confidence            5677788887665 44454  7777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.57  E-value=1.6e-12  Score=133.59  Aligned_cols=288  Identities=9%  Similarity=-0.002  Sum_probs=191.8

Q ss_pred             CEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEccCCceE
Q 004270          152 NKVIVGSQE-----GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEEL  216 (764)
Q Consensus       152 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~  216 (764)
                      +.+++....     +.|.++|..+++.+.++..-..+  .++++||+++|+++.          .++.|.++|..+++.+
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            567776553     69999999999999999865555  899999999888876          3678999999999999


Q ss_pred             EEEecc-C-----CCCEEEEEEeeCCCCEEEEEeC--CCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEc
Q 004270          217 VTFTHS-M-----RGAVTALAFSSDGQPLLASGAS--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSAS  287 (764)
Q Consensus       217 ~~~~~~-~-----~~~v~~l~fs~d~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~  287 (764)
                      ..+... .     ......++|+|||+ +++++..  ++.|.+.|+.+++.+..+..+..     ....|++ +.+++.+
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYMNC  236 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEEEc
Confidence            888643 0     12356789999999 6666553  68899999999999888873221     2233332 4555666


Q ss_pred             CCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccc
Q 004270          288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (764)
Q Consensus       288 ~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  366 (764)
                      .||.+.+.+.....-.......+.....+ ...+.|.+++..++..+..+.+.+.|.........-              
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~--------------  302 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA--------------  302 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC--------------
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee--------------
Confidence            67776666652221000000011111111 123567888888877778888998887543211000              


Q ss_pred             hhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--
Q 004270          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--  444 (764)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--  444 (764)
                                                           .|.+........-     ........++++++++.+++...  
T Consensus       303 -------------------------------------~~~~~~~~~i~~g-----~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          303 -------------------------------------PIEALTEAERADD-----WRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             -------------------------------------CEESSCTTTGGGT-----EEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             -------------------------------------eeeeccccccccc-----cccCCceeeEEcCCCCEEEEEeccc
Confidence                                                 0000000000000     00012223688999998888753  


Q ss_pred             --------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeE
Q 004270          445 --------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       445 --------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  512 (764)
                              .+.|.++|..+.+.+..+.         -.....+++|+|+++ +++++. .++.|.++|..+++.+.++
T Consensus       341 ~~gthk~~s~~VsVID~~T~kvv~~I~---------vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGERINKIE---------LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEE---------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEE---------CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                    3579999999999988874         123578999999999 888887 5899999999999999887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=2.6e-11  Score=121.44  Aligned_cols=278  Identities=12%  Similarity=0.014  Sum_probs=177.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .....+.++++.++|++.++...++.|.+||.. ++... +.. .....+.++++.++|. ++++...++.|..||.. +
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-C
Confidence            345678999999999877776678999999987 55433 322 2236789999999998 77666667889999987 5


Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      +............+.++++.+++.+.++...++.|..++.+ .  ... ..........+..+++.++++..++...++.
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G--TIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S--CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C--CEE-EccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            54322221234678999999999888877767778777543 1  111 1112223344556666666654444333444


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      |..++                                                                           
T Consensus       169 i~~~~---------------------------------------------------------------------------  173 (300)
T 2qc5_A          169 IGRIT---------------------------------------------------------------------------  173 (300)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EEEEC---------------------------------------------------------------------------
Confidence            44444                                                                           


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                                                         . ++.... +.      ...+...+.++++++++++.++....+.
T Consensus       174 -----------------------------------~-~g~~~~-~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~  210 (300)
T 2qc5_A          174 -----------------------------------N-TGKLEE-YP------LPTNAAAPVGITSGNDGALWFVEIMGNK  210 (300)
T ss_dssp             -----------------------------------T-TCCEEE-EE------CSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             -----------------------------------C-CCcEEE-ee------CCCCCCCcceEEECCCCCEEEEccCCCE
Confidence                                               3 111111 00      0122345677888887776666656667


Q ss_pred             EEEEECCCCCeeeeE-e-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE-EeecCCCCeeEEEEcCCCcEEEE
Q 004270          498 IKVWDFKGRDLKSRW-E-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       498 v~iwd~~~~~~~~~~-~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~-~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      |.+|+. +++..... . ....+..+++.++|++.++...++.|..||.. ++... .+......+.+++++++|++.++
T Consensus       211 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  288 (300)
T 2qc5_A          211 IGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFA  288 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred             EEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEE
Confidence            888877 44433221 1 22567899999999877776677999999984 44332 23334567899999999987665


Q ss_pred             EeCCCcEEEEEc
Q 004270          575 SGMDGSLRIWDV  586 (764)
Q Consensus       575 ~s~dg~i~iwd~  586 (764)
                      .. . .|..+|.
T Consensus       289 ~~-~-~i~~~~p  298 (300)
T 2qc5_A          289 LK-C-KIGKLNL  298 (300)
T ss_dssp             CS-S-EEEEEEE
T ss_pred             cc-C-ceEEeCC
Confidence            54 4 6776664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=2.7e-12  Score=129.69  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=142.7

Q ss_pred             CCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccce-ecCccccccccccCcEEEEEECCCCCEEEEEeCC-------
Q 004270          425 TAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-------  495 (764)
Q Consensus       425 ~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-------  495 (764)
                      ..+..++++++ |++ .+++..+.|.+|+.. ++.... ....    .......+.+++++++|+++++...+       
T Consensus        71 ~~~~~i~~~~~~g~l-~v~~~~~~l~~~d~~-g~~~~~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           71 GIPAGCQCDRDANQL-FVADMRLGLLVVQTD-GTFEEIAKKDS----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             CCEEEEEECSSSSEE-EEEETTTEEEEEETT-SCEEECCSBCT----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred             CCCceEEEecCCCcE-EEEECCCCEEEEeCC-CCEEEEEeccC----CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence            56788999999 654 444445579999988 654322 1100    01123458899999999988877655       


Q ss_pred             --------CeEEEEECCCCCeeeeEecCcceEEEEEe----ecCCEEEEE-eCCCeEEEEEcc-CCe-----EEEEeecC
Q 004270          496 --------GDIKVWDFKGRDLKSRWEVGCSLVKIVYH----RVNGLLATV-ADDLVIRLFDVV-ALR-----MVRKFEGH  556 (764)
Q Consensus       496 --------g~v~iwd~~~~~~~~~~~~~~~i~~~~~s----~~~~~la~~-~~d~~i~v~d~~-~~~-----~~~~~~~h  556 (764)
                              +.|..|+.. ++.............++++    ++++.++++ ..++.|.+||.. +++     ....+.++
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                    567777765 5554444444566889999    999766555 567899999986 454     23344445


Q ss_pred             C-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          557 T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       557 ~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      . ..+..++++++|+++++...++.|.+||..+++.+..+..+ ..+.+++|+|+|+.|..++.+...|..|+...
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            4 66889999999998888878899999999888888777766 45999999999997766665544699888753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=4.4e-13  Score=152.27  Aligned_cols=277  Identities=11%  Similarity=0.005  Sum_probs=181.6

Q ss_pred             ecCCCEEEEEcCCC---cEEEEEecCC---CCCceeeEe----ccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEE
Q 004270          277 FANEPVLMSASADN---SIKMWIFDTT---DGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLF  341 (764)
Q Consensus       277 ~~~~~~l~s~~~d~---~i~vw~~~~~---~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~  341 (764)
                      +|+|++++....++   .-.+|..+..   .+..+.+..    -.+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48898887766544   3677877654   333333321    12343467889999999999877643     358888


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      |+.+++......                                                                    
T Consensus       195 dl~tg~~~~~~~--------------------------------------------------------------------  206 (741)
T 1yr2_A          195 GVADGKPLADEL--------------------------------------------------------------------  206 (741)
T ss_dssp             ETTTCCEEEEEE--------------------------------------------------------------------
T ss_pred             ECCCCCCCCccC--------------------------------------------------------------------
Confidence            886654321100                                                                    


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCc--------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGW--------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~--------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                       ....+..++|+|| +.|+.+..++.              |++|++.++.....+..    ....+...+.++.|+|||+
T Consensus       207 -~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~----~~~~~~~~~~~~~~SpDG~  280 (741)
T 1yr2_A          207 -KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF----ATPELPKRGHGASVSSDGR  280 (741)
T ss_dssp             -EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSC
T ss_pred             -CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe----ccCCCCeEEEEEEECCCCC
Confidence             0011235789999 98888876554              88999987764322210    0013344688999999999


Q ss_pred             EEEEEeCCC-----eEEEEECCCC--CeeeeEe-cCcceEEEEEeecCCEEEEEeCC----CeEEEEEccCC--eEEEEe
Q 004270          488 LMISAGYHG-----DIKVWDFKGR--DLKSRWE-VGCSLVKIVYHRVNGLLATVADD----LVIRLFDVVAL--RMVRKF  553 (764)
Q Consensus       488 ~l~s~~~dg-----~v~iwd~~~~--~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d----~~i~v~d~~~~--~~~~~~  553 (764)
                      +|+..+.++     .|++||+.++  +....+. ........ ++|+|+.|+..+.+    +.|.+||+.++  +....+
T Consensus       281 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          281 WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence            998877554     8999999877  4133333 33344444 45899999888764    56999999884  344444


Q ss_pred             ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC-ccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC----CCeEEEE
Q 004270          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVD----QNGVYLW  626 (764)
Q Consensus       554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d----~~~i~lW  626 (764)
                      ..+...+.+++|+ ++.++++...|+..++|.+. +|+.+..+..+  ..+..++++|+++.|+....+    + .|++|
T Consensus       360 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~-~i~~~  437 (741)
T 1yr2_A          360 PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA-TVLAL  437 (741)
T ss_dssp             CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE-EEEEE
T ss_pred             cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC-EEEEE
Confidence            5555567778887 66788888899988877654 56666666643  348899999999877644332    3 69999


Q ss_pred             eccc
Q 004270          627 VNRC  630 (764)
Q Consensus       627 ~~~~  630 (764)
                      ++.+
T Consensus       438 d~~t  441 (741)
T 1yr2_A          438 DPAT  441 (741)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=2.9e-13  Score=153.76  Aligned_cols=283  Identities=12%  Similarity=0.063  Sum_probs=179.3

Q ss_pred             cCCCCEEEEEEcCCe---EEEEEcc-----CCceEEEEe-----ccCCCCEEEEEEeeCCCCEEEEEe-CCC----cEEE
Q 004270          190 SPALDVVAVGCSDGK---IHVHNVR-----YDEELVTFT-----HSMRGAVTALAFSSDGQPLLASGA-SSG----VISI  251 (764)
Q Consensus       190 sp~~~~la~g~~dg~---i~iwd~~-----~~~~~~~~~-----~~~~~~v~~l~fs~d~~~~l~sg~-~dg----~i~i  251 (764)
                      +|+|++++....++.   -.+|...     .++....+.     ..+...+..++|||||+ .|+.+. .+|    .|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence            488888887665432   4555543     233222221     11123688999999999 555544 333    5999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc--------------EEEEEecCCCCCceeeEeccCCCCCC
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--------------IKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~--------------i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ||+.+++.+....  +...+..++|+|| +.|+.++.++.              |++|++.+......++.....+...+
T Consensus       194 ~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          194 VGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG  270 (741)
T ss_dssp             EETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             EECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence            9999998765422  3333468899999 98888877654              77777654432223444444444467


Q ss_pred             eeEEEecCCCEEEEEeCCC-----cEEEEEeecccc--cccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          318 LCIRFYANGRHILSAGQDR-----AFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      ..+.|+|||++|+..+.++     .|++||+.++..  ...+.                                     
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-------------------------------------  313 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-------------------------------------  313 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-------------------------------------
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-------------------------------------
Confidence            8999999999988877543     677777764310  11110                                     


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEECcCCc-ccceecCc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGI-SRGSYLDM  465 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~-~~~~~~~~  465 (764)
                                                     .+....... ++|+|+.+++.+..    +.|.+|++.++. ....+.  
T Consensus       314 -------------------------------~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~--  359 (741)
T 1yr2_A          314 -------------------------------PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV--  359 (741)
T ss_dssp             -------------------------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE--
T ss_pred             -------------------------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe--
Confidence                                           001122222 35889988888764    459999998752 222222  


Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEec--CcceEEEEEeecCCEEEEEeC----CCe
Q 004270          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVAD----DLV  538 (764)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~----d~~  538 (764)
                           ..+...+.+++++ ++.++++...|+..++|.+. +++....+..  ...+..+.++|+++.++....    .++
T Consensus       360 -----~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  433 (741)
T 1yr2_A          360 -----PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPAT  433 (741)
T ss_dssp             -----CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEE
T ss_pred             -----cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence                 2445567778887 66778888889987777654 4555555554  366788999999886664432    478


Q ss_pred             EEEEEccCCeEEEEee
Q 004270          539 IRLFDVVALRMVRKFE  554 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~  554 (764)
                      |++||+.+++ ...+.
T Consensus       434 i~~~d~~tg~-~~~l~  448 (741)
T 1yr2_A          434 VLALDPATAK-TTPWE  448 (741)
T ss_dssp             EEEEETTTTE-EEECS
T ss_pred             EEEEECCCCc-EEEEe
Confidence            9999999887 34444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=6.4e-11  Score=118.53  Aligned_cols=276  Identities=10%  Similarity=0.031  Sum_probs=184.7

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV  217 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~  217 (764)
                      ....+++.+++  +..++...++.|.+||.. ++... .+..+...+.++++.+++.+.++...++.|..+|.. ++.. 
T Consensus        21 ~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-   95 (300)
T 2qc5_A           21 GPYGITSSEDG--KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-   95 (300)
T ss_dssp             CEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred             CcceeeECCCC--CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence            44566778887  555555567899999987 55443 223344678999999999877776667899999987 5543 


Q ss_pred             EEecc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          218 TFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       218 ~~~~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      .+... ....+.++++.++|. ++++...++.|..+|.. ++............+.++++.+++++.++...++.|..++
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            33321 246789999999998 77766667899999987 6544322213456789999999999777766677888886


Q ss_pred             ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      .+   +.... .....+...+..+++.++|+..++....+.|..|+. ++....                          
T Consensus       174 ~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--------------------------  222 (300)
T 2qc5_A          174 NT---GKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--------------------------  222 (300)
T ss_dssp             TT---CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--------------------------
T ss_pred             CC---CcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--------------------------
Confidence            52   22121 222344567889999999987776666677888875 221100                          


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (764)
                                                  +.             .......+.+++++++|+..++...++.|..|+. ++
T Consensus       223 ----------------------------~~-------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  260 (300)
T 2qc5_A          223 ----------------------------YD-------------IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN  260 (300)
T ss_dssp             ----------------------------EE-------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred             ----------------------------EE-------------CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence                                        00             0012256789999999996666666789999998 44


Q ss_pred             cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      ... .+..      ......+.+++++++|++.++.. . .|..+|.
T Consensus       261 ~~~-~~~~------~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          261 TIQ-EYQL------QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CEE-EEEC------CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             cEE-EEEC------CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            332 2210      12345678899999998666554 4 6666654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.49  E-value=1.1e-11  Score=138.12  Aligned_cols=336  Identities=8%  Similarity=0.073  Sum_probs=203.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC----------e-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----------I-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----------i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      ..|++++.++.|.-+|..+|+.+.++......          + ..+++  ++..|++++.|+.|..+|.++|+.+.++.
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            57999999999999999999999998754321          0 11222  35688899999999999999999998887


Q ss_pred             cc-CCCCEEEEEEe---eCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccc-----------------------
Q 004270          221 HS-MRGAVTALAFS---SDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAH-----------------------  267 (764)
Q Consensus       221 ~~-~~~~v~~l~fs---~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h-----------------------  267 (764)
                      .. +......+..+   .++.  ++++.      .+|.|..||.++|+.+..+....                       
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             CcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            53 11111111111   2554  44443      36899999999999887765210                       


Q ss_pred             -------ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270          268 -------DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (764)
Q Consensus       268 -------~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i  340 (764)
                             ......+++.|+..+++.++.++..  |.....        .      +.       .+..++    -+.|..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~--------~------~~-------~gd~~y----~~~v~A  279 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWR--------S------QA-------KGDNLF----LSSIVA  279 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHH--------H------TT-------CSCCTT----TTEEEE
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCC--------C------CC-------CCCcee----eeeEEE
Confidence                   0111256788887888887776542  321100        0      00       000000    012444


Q ss_pred             EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (764)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (764)
                      +|..+++..-.+.....                             ..                |++             
T Consensus       280 lD~~TG~~~W~~~~~~~-----------------------------d~----------------wd~-------------  301 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPG-----------------------------DA----------------WDY-------------  301 (689)
T ss_dssp             EETTTCCEEEEEESSTT-----------------------------CC----------------SCC-------------
T ss_pred             EEccCCceeEeeecCCc-----------------------------cc----------------ccc-------------
Confidence            44444332221110000                             00                000             


Q ss_pred             CCCCCCeEEEEEccCCC---EEEEEecCCcEEEEECcCCcccceecCcccc------------------c--ccccc---
Q 004270          421 PENPTAVKACTISACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------S--NYAHN---  474 (764)
Q Consensus       421 ~~~~~~v~~~~~s~~g~---~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~------------------~--~~~h~---  474 (764)
                       ..........+..+|+   .++.++.+|.++++|..+|+.+.........                  .  .....   
T Consensus       302 -~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~  380 (689)
T 1yiq_A          302 -TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL  380 (689)
T ss_dssp             -CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred             -cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence             0001111222223454   6788888899999998888876432211100                  0  00000   


Q ss_pred             --------CcEEEEEECCCCCEEEEEeC---------------------------------------------CCeEEEE
Q 004270          475 --------GEVVGVACDSTNTLMISAGY---------------------------------------------HGDIKVW  501 (764)
Q Consensus       475 --------~~v~~l~~~~~~~~l~s~~~---------------------------------------------dg~v~iw  501 (764)
                              ..-..++++|+..++++...                                             +|.|+.|
T Consensus       381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~  460 (689)
T 1yiq_A          381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW  460 (689)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred             eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence                    01123788888887776532                                             4789999


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC-eeEEEEcCCCcE-EEEEeC
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKW-LLSSGM  577 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~dg~~-l~s~s~  577 (764)
                      |+.+++.+..+..+.+.....+...+.++++++.|+.++.||.++|+.+.+++...+. -.-+.|+.||+. +++.+.
T Consensus       461 D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          461 DPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             ETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            9999999999888876666677888999999999999999999999999998755432 345778889874 444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.46  E-value=5.8e-11  Score=131.97  Aligned_cols=334  Identities=12%  Similarity=0.063  Sum_probs=206.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-----------eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-----------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----------i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      ..|++++.++.|.-+|..+|+.+.++......           ...+++  ++..|++++.|+.|..+|..+|+.+.++.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            57889989999999999999999998754221           112233  45688899999999999999999999887


Q ss_pred             cc-CC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeecccc----------------------
Q 004270          221 HS-MR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHD----------------------  268 (764)
Q Consensus       221 ~~-~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~----------------------  268 (764)
                      .. ..   ..+.+--...++  .+++++.      +|.|+.+|..+|+.+..+.....                      
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             TTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             CCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            54 10   112211111244  3444442      68999999999998877652111                      


Q ss_pred             ---------cCeeEEEEecCCCEEEEEcCCC-------------------cEEEEEecCCCCCceeeEeccCCC------
Q 004270          269 ---------NAIISLHFFANEPVLMSASADN-------------------SIKMWIFDTTDGDPRLLRFRSGHS------  314 (764)
Q Consensus       269 ---------~~v~~l~~~~~~~~l~s~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~h~------  314 (764)
                               .....+++.|++..++.++.++                   +|..+|.+++.  ..-......|.      
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCC
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCccccccc
Confidence                     1113578889888888887664                   36666555442  22222222231      


Q ss_pred             -CCCeeEEEecCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          315 -APPLCIRFYANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       315 -~~v~~i~~~~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                       ..+..+....+|   ..++.++.+|.+.++|..+++..........                                 
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~---------------------------------  358 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV---------------------------------  358 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC---------------------------------
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc---------------------------------
Confidence             223333444467   6788888999999999877765433211000                                 


Q ss_pred             ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (764)
                                                        .....+  ...|+.+......     +   .+.....+..     .
T Consensus       359 ----------------------------------~~~~~~--d~~g~~~~~~~~~-----~---~~~~~~~~P~-----~  389 (677)
T 1kb0_A          359 ----------------------------------NWASGY--DKHGKPIGIAAAR-----D---GSKPQDAVPG-----P  389 (677)
T ss_dssp             ----------------------------------SSEEEE--CTTSCEEECGGGG-----C---TTSCEECSSC-----T
T ss_pred             ----------------------------------Cccccc--CCCCceeeccccC-----c---CCCccEECcC-----c
Confidence                                              000000  0011111000000     0   0000000000     0


Q ss_pred             ccccCcEEEEEECCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCC
Q 004270          471 YAHNGEVVGVACDSTNTLMISAGY-------------------------------------------HGDIKVWDFKGRD  507 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~~-------------------------------------------dg~v~iwd~~~~~  507 (764)
                      .+.. .-..++++|++.++++...                                           .|.|..||+.+++
T Consensus       390 ~G~~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          390 YGAH-NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TCSS-CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccc-CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence            0111 1135667777776666432                                           2789999999999


Q ss_pred             eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCeeEEEEcCCCcEEEE
Q 004270          508 LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLS  574 (764)
Q Consensus       508 ~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~s~dg~~l~s  574 (764)
                      .+..+....+.....+..++.++++++.|+.+++||..+++.+.++.... ..-.-+.|+.+|+.++.
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            99999887777777788889999999999999999999999999987443 33345677788875543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.45  E-value=1.3e-10  Score=120.49  Aligned_cols=295  Identities=11%  Similarity=0.063  Sum_probs=189.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG---------SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~  222 (764)
                      ..+++++.++.|..+|.++|+.+..+....         ..+.+ ....++..+++++.++.|..+|..+|+.+......
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            579999999999999999999998876532         22322 22224567888999999999999999998877654


Q ss_pred             CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe------eEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI------ISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v------~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                       ......... .++  .+++++.++.|..+|..+++.+.... .. ..+      ......  +..++.++.++.+..+|
T Consensus       133 -~~~~~~p~~-~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~-~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          133 -GEALSRPVV-SDG--LVLIHTSNGQLQALNEADGAVKWTVN-LD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             -SCCCSCCEE-ETT--EEEEECTTSEEEEEETTTCCEEEEEE-CC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred             -CceEcCCEE-ECC--EEEEEcCCCeEEEEECCCCcEEEEEe-CC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence             111111122 244  57778889999999999998887766 22 111      122222  34677788888899887


Q ss_pred             ecCCCCCceeeEeccCCC--C-----C---Ce-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270          297 FDTTDGDPRLLRFRSGHS--A-----P---PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (764)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~--~-----~---v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  365 (764)
                      ..++.    .+.......  .     .   +. ....  .+..++.++.++.+..+|..+++....              
T Consensus       205 ~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~--------------  264 (376)
T 3q7m_A          205 MEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWK--------------  264 (376)
T ss_dssp             TTTCC----EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEE--------------
T ss_pred             CCCCc----EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEee--------------
Confidence            76542    222111110  0     0   10 1111  345677778888899988766543221              


Q ss_pred             chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (764)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~  445 (764)
                                                               ...               .....+.  .++..+++++.+
T Consensus       265 -----------------------------------------~~~---------------~~~~~~~--~~~~~l~~~~~~  286 (376)
T 3q7m_A          265 -----------------------------------------REL---------------GSVNDFI--VDGNRIYLVDQN  286 (376)
T ss_dssp             -----------------------------------------ECC---------------CCEEEEE--EETTEEEEEETT
T ss_pred             -----------------------------------------ccC---------------CCCCCce--EECCEEEEEcCC
Confidence                                                     110               1122222  247788889999


Q ss_pred             CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe
Q 004270          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH  524 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s  524 (764)
                      |.+..+|..+++.......       .....+.....  .+..|+.++.+|.|.++|..+++.+...... ..+......
T Consensus       287 g~l~~~d~~tG~~~w~~~~-------~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~  357 (376)
T 3q7m_A          287 DRVMALTIDGGVTLWTQSD-------LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA  357 (376)
T ss_dssp             CCEEEEETTTCCEEEEECT-------TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred             CeEEEEECCCCcEEEeecc-------cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence            9999999999987665431       11111222222  2467888899999999999999998887763 333221111


Q ss_pred             ecCCEEEEEeCCCeEEEEE
Q 004270          525 RVNGLLATVADDLVIRLFD  543 (764)
Q Consensus       525 ~~~~~la~~~~d~~i~v~d  543 (764)
                       .+..|++++.+|.|+.|+
T Consensus       358 -~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          358 -ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -ETTEEEEEBTTSCEEEEE
T ss_pred             -ECCEEEEEeCCCEEEEEe
Confidence             367888899999999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=7.9e-11  Score=117.47  Aligned_cols=190  Identities=11%  Similarity=0.113  Sum_probs=134.6

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---------  495 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------  495 (764)
                      ..+.+++++++|++++ +. ++.|.+||..++..........    ......+..++++|+|+++++...+         
T Consensus        54 ~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           54 APVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDN----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             SCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCT----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred             CceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCC----CCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence            5688999999999544 44 5689999998876543221100    0123458899999999977755322         


Q ss_pred             CeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEE-EeCCCeEEEEEc--cCCeE-----EEEeecCCCCeeEEEEc
Q 004270          496 GDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDV--VALRM-----VRKFEGHTDRITDFCFS  566 (764)
Q Consensus       496 g~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~d~~i~v~d~--~~~~~-----~~~~~~h~~~i~~l~~s  566 (764)
                      ..-.+|.+.. ++.............++|+|+++.|++ .+.++.|.+|++  .++..     ...+..+.+....++++
T Consensus       128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d  207 (297)
T 3g4e_A          128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID  207 (297)
T ss_dssp             TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred             CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence            2345555543 343333333356788999999987655 455789999997  45543     23333344668899999


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEc-CCCCeEEEEEeCC
Q 004270          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVDQ  620 (764)
Q Consensus       567 ~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~s-p~g~~lat~~~d~  620 (764)
                      ++|++.++...++.|.+||..+|+.+..+..+. .+++++|. |+++.|..++...
T Consensus       208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            999988888778899999999999999998874 59999998 8988877776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=1.5e-11  Score=124.44  Aligned_cols=279  Identities=10%  Similarity=-0.047  Sum_probs=183.2

Q ss_pred             EEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCc
Q 004270          239 LLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDP  304 (764)
Q Consensus       239 ~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~  304 (764)
                      .+++...++    .|.++|..+++.+.++..+. .+  .+.++||++.++++.          .++.|.+||..+.    
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~----  106 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF----  106 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----
Confidence            444444444    78899999999999998554 34  799999999888876          3688999988776    


Q ss_pred             eeeEeccCC-------CCCCeeEEEecCCCEEEEEeC--CCcEEE--EEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          305 RLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRL--FSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       305 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +.+..+...       ...+..++++|||++++++..  +..+.+  +|+.+   ...+..+                  
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------------  165 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------------------  165 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------------------
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------------------
Confidence            344443222       245789999999999998874  356777  77754   1111100                  


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEE
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFN  452 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~  452 (764)
                                                                         ..   ..+.|+| ..+++.+.+|.+...+
T Consensus       166 ---------------------------------------------------~~---~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          166 ---------------------------------------------------SC---FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             ---------------------------------------------------SC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             ---------------------------------------------------Cc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence                                                               00   0112333 2333445566666677


Q ss_pred             CcC-----CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEecC----------
Q 004270          453 LQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG----------  515 (764)
Q Consensus       453 ~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~----------  515 (764)
                      +.+     ++......    ....-...+.   + .+++..++..+. +.+.+.|+.+..  .+..+...          
T Consensus       192 ~~~~~~~~~~v~~~~t----~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCT----GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             CCSSCCCCEECCCCSC----TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             CccccccCCeEEEEee----eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence            765     33221100    0000112222   3 556666666666 999999987543  22222211          


Q ss_pred             -cceEEEEEeecCCEEEEEeC---------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE-EEEEe-CCCcEEE
Q 004270          516 -CSLVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW-LLSSG-MDGSLRI  583 (764)
Q Consensus       516 -~~i~~~~~s~~~~~la~~~~---------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~-l~s~s-~dg~i~i  583 (764)
                       .....++++|+++.++++..         ++.+.++|+.+++.+.++.... ....++|+|||++ +++.. .+++|.+
T Consensus       263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEE
Confidence             11223789999998887643         2366799999999998887543 5889999999984 55666 5999999


Q ss_pred             EEcCccceEEEEeeCCceEEEEEcCC
Q 004270          584 WDVILARQIDAIHVDVSITALSLSPN  609 (764)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~sp~  609 (764)
                      +|+.+++.++.+........+++.+.
T Consensus       342 ID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          342 YDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             EECCCCcEEEEEECCCCCCEEEeecC
Confidence            99999999999998888888887653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.6e-10  Score=116.43  Aligned_cols=248  Identities=11%  Similarity=0.132  Sum_probs=164.3

Q ss_pred             CCCeEEEEEcCCCCEEEE-------EEcCCeEEEEEccCCceEEEEe---ccCCCCEEEEEEeeC-CCCEEEEEeCCCcE
Q 004270          181 GSSISSCVSSPALDVVAV-------GCSDGKIHVHNVRYDEELVTFT---HSMRGAVTALAFSSD-GQPLLASGASSGVI  249 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~-------g~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i  249 (764)
                      -....+++|++++.++++       +..++.|.+||..+++......   ..+...+.+++++++ |+ ++++ +..+.|
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~-~~~~~l   94 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVA-DMRLGL   94 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEE-ETTTEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEE-ECCCCE
Confidence            445688999999987777       5778999999988877543222   012357899999999 76 5544 444579


Q ss_pred             EEEECCCceeeee-eec---ccccCeeEEEEecCCCEEEEEcCCC-------------cEEEEEecCCCCCceeeEeccC
Q 004270          250 SIWNLEKRRLQSV-IRE---AHDNAIISLHFFANEPVLMSASADN-------------SIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       250 ~iwd~~~~~~~~~-~~~---~h~~~v~~l~~~~~~~~l~s~~~d~-------------~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                      .+||.. ++.... ...   .....+.++++.+++++.++...++             ...+|.++.. +.  .... ..
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~-~~  169 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQV-DT  169 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEE-EE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEe-cc
Confidence            999988 665433 220   1224588999999998777765541             2455555543 22  2211 22


Q ss_pred             CCCCCeeEEEe----cCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270          313 HSAPPLCIRFY----ANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (764)
Q Consensus       313 h~~~v~~i~~~----~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (764)
                      +...+..++++    ++++.++.+ ..++.|.+|+.........                                    
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------------------  213 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------------------  213 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------------------
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------------------
Confidence            33456889999    998766555 4678899998752110000                                    


Q ss_pred             cccceeEeeeCCceEEEEEccceeecceeecCCCCCC-CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP-TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                                                ...+.....+. ..+..++++++|++.++...++.|.+|+..+++....+.   
T Consensus       214 --------------------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---  264 (314)
T 1pjx_A          214 --------------------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---  264 (314)
T ss_dssp             --------------------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---
T ss_pred             --------------------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---
Confidence                                      00000001112 456789999999988888888999999998777665553   


Q ss_pred             ccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCC
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKG  505 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~  505 (764)
                           .+...+.+++++++++.| ++...++.|..|+...
T Consensus       265 -----~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          265 -----CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -----CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -----CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence                 455789999999999955 4555668899999764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=5e-11  Score=124.16  Aligned_cols=191  Identities=10%  Similarity=0.058  Sum_probs=132.2

Q ss_pred             EEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          430 CTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       430 ~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      ++++++++.++++..++  .|.+++...+.....+...    .......+.+++++|++..|+.+..++.|+.||..++.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            89999999999988866  7999998766543332100    01144567889999955556557778999999998776


Q ss_pred             eeee----EecCcc---eEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCC---------------CCeeEEE
Q 004270          508 LKSR----WEVGCS---LVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHT---------------DRITDFC  564 (764)
Q Consensus       508 ~~~~----~~~~~~---i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~---------------~~i~~l~  564 (764)
                      ....    ......   ...++++|+ +.++++-..++.|+.|+....  +..+.++.               .....++
T Consensus       252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia  329 (409)
T 3hrp_A          252 VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMT  329 (409)
T ss_dssp             EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred             EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence            4322    111111   239999995 555556667889999997654  33444432               3478899


Q ss_pred             EcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeC----------------CceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          565 FSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD----------------VSITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       565 ~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~----------------~~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ++|+|+++++-+ .++.|+.|++.+|.... +..+                .....++++++|.++++-..++ .|+.++
T Consensus       330 ~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~-~Ir~i~  407 (409)
T 3hrp_A          330 VDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK-AIRKYA  407 (409)
T ss_dssp             ECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC-EEEEEE
T ss_pred             EeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC-eEEEEE
Confidence            999999888777 88999999988887543 3332                2488999999976666555444 577665


Q ss_pred             c
Q 004270          628 N  628 (764)
Q Consensus       628 ~  628 (764)
                      +
T Consensus       408 ~  408 (409)
T 3hrp_A          408 V  408 (409)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.41  E-value=5e-10  Score=124.42  Aligned_cols=293  Identities=12%  Similarity=0.099  Sum_probs=199.6

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc-----------ceEEEEEeCCeEEEEEC-CeEEEEec--CceEEEecc
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK-----------KIRALASYRDYTFAAYG-NHIAVVKR--AHQVATWSR   91 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~I~~~~~~~~~~~~a~g-~~i~vw~~--~~~~~~~~~   91 (764)
                      ++.+.+++.++.+.-+|..+++.+........           .-..+++..+.+|+++. +.|+.+|.  ++.+-+...
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  156 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence            45566666688999999999999987643211           12356777788888774 45999985  666666544


Q ss_pred             c-c----cceE-EEEEeCCEEEEEec------CCcEEEEEccCCcccccceeeEecCC----------------------
Q 004270           92 H-S----AKVN-LLLLFGEHILSIDI------DGNMFIWAFKGIEENLAPVGHVKLDD----------------------  137 (764)
Q Consensus        92 h-~----~~v~-~l~~~g~~l~s~~~------dg~v~vWd~~~~~~~~~~~~~~~~~~----------------------  137 (764)
                      + .    ..+. .....+..++.++.      +|.|..+|..+++...    .+....                      
T Consensus       157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W----~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW----RWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE----EEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             CcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEE----EeccCCCCcccccccccccccccccccc
Confidence            3 1    1222 22235667776654      6899999999998732    222111                      


Q ss_pred             ----------ccccEEEEeCCCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEEcC--CC-----
Q 004270          138 ----------KFTPTCIMHPDTYLNKVIVGSQEG-------------------SLQLWNISTKKKLYEFKG--WG-----  181 (764)
Q Consensus       138 ----------~~~~~~~~~p~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--h~-----  181 (764)
                                ......++.|++  +.+++++.++                   .|..+|.++|+.+..++.  |.     
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~  310 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT  310 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence                      111245678887  7888887764                   599999999999988864  21     


Q ss_pred             --CCeEEEEEcCCC---CEEEEEEcCCeEEEEEccCCceEEEEeccCCC----------CE-------------------
Q 004270          182 --SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----------AV-------------------  227 (764)
Q Consensus       182 --~~i~~~~~sp~~---~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v-------------------  227 (764)
                        .....+....+|   +.+++++.+|.+.++|..+|+.+..+......          ++                   
T Consensus       311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence              222333444577   68999999999999999999998877643111          11                   


Q ss_pred             -----EEEEEeeCCCCEEEEEeC-------------------------------------------CCcEEEEECCCcee
Q 004270          228 -----TALAFSSDGQPLLASGAS-------------------------------------------SGVISIWNLEKRRL  259 (764)
Q Consensus       228 -----~~l~fs~d~~~~l~sg~~-------------------------------------------dg~i~iwd~~~~~~  259 (764)
                           ..++|+|++. ++++...                                           .|.|..||+.+++.
T Consensus       391 G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~  469 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA  469 (677)
T ss_dssp             CSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred             cccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence                 1468899887 6666432                                           27899999999999


Q ss_pred             eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEE
Q 004270          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s  331 (764)
                      +....  +..++....+..++..++.++.|+.+++||..+.+    .+..+. ++.....-+.|..+|+.++.
T Consensus       470 ~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~----~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          470 AWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE----KLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc----eeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            88876  44555666677788889999999999999887763    443332 44444455667778865544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=1.6e-11  Score=124.26  Aligned_cols=133  Identities=12%  Similarity=0.105  Sum_probs=110.7

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      . |+.++|  ++++|+++ .+|.|++||+.+........        .|...+.++.+.+..  ++++..||.|.+||++
T Consensus        89 ~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           89 D-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT--------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLR  154 (388)
T ss_dssp             T-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE--------ECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred             C-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc--------eeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence            5 999999  99999999 88999999998876544432        667778888776553  8889999999999999


Q ss_pred             CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEe------e---cCCCCeeEEEEcCCCcEEE
Q 004270          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKF------E---GHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~------~---~h~~~i~~l~~s~dg~~l~  573 (764)
                      ++....   ....|++++|||+|  +++|..||.+++|+...++.  .+++      .   +|...|.++.|.+++.+++
T Consensus       155 ~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          155 TKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             TCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             CCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            887653   44689999999999  78899999999999988876  5666      3   4788999999999999998


Q ss_pred             EEe
Q 004270          574 SSG  576 (764)
Q Consensus       574 s~s  576 (764)
                      +-+
T Consensus       230 ~y~  232 (388)
T 1xip_A          230 VFG  232 (388)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=5e-11  Score=121.60  Aligned_cols=275  Identities=12%  Similarity=0.054  Sum_probs=176.0

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEE--cCCeEEEEEccCCceEEEEec------cCCCCEEEEEEeeCCCCEEEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      +.+..+.   .....++++|+|+++++..  .++.++||.+.+++ +..+..      .+-..+..++++++|+ ++++-
T Consensus        10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D   84 (343)
T 2qe8_A           10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLD   84 (343)
T ss_dssp             EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEE
T ss_pred             EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEc
Confidence            4455544   6789999999999888764  23435666665554 332211      1235799999999987 65554


Q ss_pred             eC-----CCcEEEEECCCceeeeeeecc-----cccCeeEEEEecCCCEE-EEEc---CCCcEEEEEecCCCCCceeeEe
Q 004270          244 AS-----SGVISIWNLEKRRLQSVIREA-----HDNAIISLHFFANEPVL-MSAS---ADNSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       244 ~~-----dg~i~iwd~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~l-~s~~---~d~~i~vw~~~~~~~~~~~~~~  309 (764)
                      ..     ++.|.+||+.+++.+..+...     +...+..+++.+++..+ ++..   .++.|.+|+....    +..+.
T Consensus        85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g----~~~r~  160 (343)
T 2qe8_A           85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG----LAARV  160 (343)
T ss_dssp             CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC----CEEEE
T ss_pred             CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC----CEEEE
Confidence            33     578999999999877666521     22456899999865444 5544   5788999987654    34444


Q ss_pred             ccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270          310 RSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (764)
Q Consensus       310 ~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (764)
                      ..+|..... ...+.++|..+.+.+.++.++.|.                                              
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------------------------------  194 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------------------------------  194 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------------------------------
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceecee----------------------------------------------
Confidence            444422111 134555777677677777665442                                              


Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECcC---Cccc-ceec
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQS---GISR-GSYL  463 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~~~---~~~~-~~~~  463 (764)
                                                          ..+..++++|+|+.|+++...+ .+..++...   +... ..+.
T Consensus       195 ------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          195 ------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             ------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             ------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence                                                3456799999999998887766 555555321   1100 0000


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec--CcceEEEEEeecCCEEEEEeCCCeE
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVI  539 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~i  539 (764)
                      .  .....++.+...+++++++|.++++...++.|.+||..+++.......  ...+..+++.+++.++++.+..+.+
T Consensus       239 ~--~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          239 S--KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             T--TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             c--ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            0  000013444567899999999999988999999999856654433333  2457899999998887777654443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.40  E-value=2.2e-11  Score=123.15  Aligned_cols=257  Identities=10%  Similarity=-0.006  Sum_probs=176.8

Q ss_pred             cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEcCC---
Q 004270          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS----------QEGSLQLWNISTKKKLYEFKGW---  180 (764)
Q Consensus       114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h---  180 (764)
                      +|.+.|..+.+.    +.++......  .++++|++  ++++++.          .++.|.+||..+++.+.++...   
T Consensus        47 ~vsvID~~t~~v----~~~i~vG~~P--~i~~spDg--~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGVT----LGHSLGAFLS--LAVAGHSG--SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTEE----EEEEEECTTC--EEEECTTS--SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             eEEEEECCCCeE----EEEEeCCCCC--ceEECCCC--CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence            788999999988    7777766554  79999999  7788876          3688999999999999998643   


Q ss_pred             ----CCCeEEEEEcCCCCEEEEEEc--CCeEEE--EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          181 ----GSSISSCVSSPALDVVAVGCS--DGKIHV--HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       181 ----~~~i~~~~~sp~~~~la~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                          ......++++|||++++++..  +..|.+  +|..+   +..+...  +.   ..+.|+++..+++.+.||.+.+.
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEE
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEE
Confidence                123568999999999999875  467888  99887   4555432  21   23456776567777789999999


Q ss_pred             ECCC-----ceeee----eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC----------C
Q 004270          253 NLEK-----RRLQS----VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG----------H  313 (764)
Q Consensus       253 d~~~-----~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~----------h  313 (764)
                      |+.+     ++...    .+. ....+.   . ++++..++..+. +.+.+.|......  ..+....-          .
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~-vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~--~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQN-CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA--TMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSC-BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC--EEECCCCSSCTHHHHTTEE
T ss_pred             ECccccccCCeEEEEeeeeee-CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc--eEEEEEEeccccccccccc
Confidence            9987     54432    111 112232   3 667777666666 8898888754321  12221110          1


Q ss_pred             CCCCeeEEEecCCCEEEEEeC---------CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270          314 SAPPLCIRFYANGRHILSAGQ---------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (764)
                      ......++++||++.++.+..         ++.+.++|+.+.+....+..+                             
T Consensus       263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-----------------------------  313 (368)
T 1mda_H          263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----------------------------  313 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------------------------
T ss_pred             cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------------------------
Confidence            112233789999988886543         234669998877655444221                             


Q ss_pred             ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE-Ee-cCCcEEEEECcCCccccee
Q 004270          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GT-AGGWIERFNLQSGISRGSY  462 (764)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~-~~g~i~i~~~~~~~~~~~~  462 (764)
                                                              .....++++|+|+++++ .. .++.|.++|+.+++.+..+
T Consensus       314 ----------------------------------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          314 ----------------------------------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             ----------------------------------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             ----------------------------------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence                                                    34678999999985544 44 4899999999999988877


Q ss_pred             c
Q 004270          463 L  463 (764)
Q Consensus       463 ~  463 (764)
                      .
T Consensus       354 ~  354 (368)
T 1mda_H          354 E  354 (368)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=6.9e-12  Score=126.98  Aligned_cols=177  Identities=11%  Similarity=0.003  Sum_probs=133.5

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce-----ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-----YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                      ..+..+++++...++++|+.++ +.+|++++......     +.   ......+.. |+.++|  ++++|+++ .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~---~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT---FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC---CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc---ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            4689999999999999999985 55598765541100     11   001124566 999999  88999988 889999


Q ss_pred             EEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270          500 VWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (764)
Q Consensus       500 iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d  578 (764)
                      +||+.+........ +..++..+.+.+.  .+|+++.||.+.+||+.++....    +...|++++|||+|  ++.|..|
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            99998766544443 3366777666544  38889999999999999887653    34689999999999  6778899


Q ss_pred             CcEEEEEcCccce--EEEE------e----eCCceEEEEEcCCCCeEEEEE
Q 004270          579 GSLRIWDVILARQ--IDAI------H----VDVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       579 g~i~iwd~~~~~~--~~~~------~----~~~~v~~l~~sp~g~~lat~~  617 (764)
                      |++++|+...++.  .+.+      .    +...|.++.|.+++.+|++=.
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999998887775  5566      2    234599999999999998743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=3.3e-10  Score=114.52  Aligned_cols=187  Identities=9%  Similarity=-0.046  Sum_probs=130.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC------CCeE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI  498 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~v  498 (764)
                      ..+.+++++++|++++.. .+ .|.+||..++........ .   .......+..++++|+|+++++...      .+.|
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~-~---~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL-E---SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS-S---TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC-C---CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            468889999999877654 44 499999988765432210 0   0011346889999999997776542      2456


Q ss_pred             EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CC-e-----EEEEeecCCCCeeEEEEcCCC
Q 004270          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--AL-R-----MVRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~-~-----~~~~~~~h~~~i~~l~~s~dg  569 (764)
                      ..++  +++.............++|+|+++.++++ +.++.|.+||+.  ++ +     ....+.........++++++|
T Consensus       164 ~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G  241 (326)
T 2ghs_A          164 YHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  241 (326)
T ss_dssp             EEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             EEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence            5666  45443333333556789999999877655 457899999986  55 3     233343344567889999999


Q ss_pred             cEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEc-CCCCeEEEEEeCC
Q 004270          570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVDQ  620 (764)
Q Consensus       570 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~s-p~g~~lat~~~d~  620 (764)
                      ++.++...++.|.+||. +++.+..+..+. .+++++|+ |+++.|.+++..+
T Consensus       242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          242 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            98887767788999998 688888887766 49999998 8988877666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=1.3e-09  Score=113.41  Aligned_cols=251  Identities=10%  Similarity=-0.002  Sum_probs=167.5

Q ss_pred             EEEEecCceEEEeccc---------------ccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc
Q 004270           77 IAVVKRAHQVATWSRH---------------SAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF  139 (764)
Q Consensus        77 i~vw~~~~~~~~~~~h---------------~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~  139 (764)
                      ...|.....+.++.|+               -.....|+++  |+.+++...++.|++||.+++..    ..... ....
T Consensus        99 ~F~y~~~~~v~tv~G~~~~~~~~dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~----~~~~~-~~~~  173 (409)
T 3hrp_A           99 TFKYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV----TTVHP-GFKG  173 (409)
T ss_dssp             CEEECCCEEEEEEEECTTCCSCCCBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE----EEEEE-TCCB
T ss_pred             eEEEecccEEEEeecccCCCccCCCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE----EEeec-cCCC
Confidence            4455555556666655               2345677774  55555555568899999988766    22222 2233


Q ss_pred             ccEEEEeCCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEE----cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEG--SLQLWNISTKKKLYEF----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~  213 (764)
                      .. ++++|++  +.|+++..++  .|.+|+..++.....+    ......+.+++++|++..|.++..++.|..||..++
T Consensus       174 ~~-ia~~~~g--~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          174 GK-PAVTKDK--QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CB-CEECTTS--SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred             Cc-eeEecCC--CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence            33 7899999  7888888766  7999998766554444    324567789999996556666777899999999877


Q ss_pred             ceEEEE---eccCCCCE--EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc---------------ccCeeE
Q 004270          214 EELVTF---THSMRGAV--TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH---------------DNAIIS  273 (764)
Q Consensus       214 ~~~~~~---~~~~~~~v--~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h---------------~~~v~~  273 (764)
                      ......   .......-  ..++|+|++..++++-..++.|+.|+....  ...+. ++               -.....
T Consensus       251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~g  327 (409)
T 3hrp_A          251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNG  327 (409)
T ss_dssp             CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEE
T ss_pred             CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeE
Confidence            633220   11111222  399999964437777777899999997644  22222 22               234789


Q ss_pred             EEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCC---------------CCCCeeEEEecCCCEEEEEeCCCc
Q 004270          274 LHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH---------------SAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       274 l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      +++.+++.++++-+ .++.|+.|++...    . +..+.++               -..+..++++++|.++++-..++.
T Consensus       328 ia~d~dG~lyvad~~~~~~I~~~~~~~G----~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          328 MTVDEDGNFYIVDGFKGYCLRKLDILDG----Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             EEECTTCCEEEEETTTTCEEEEEETTTT----E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             EEEeCCCCEEEEeCCCCCEEEEEECCCC----E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            99999999888877 7889999975433    1 2222222               245889999999887787778888


Q ss_pred             EEEEEe
Q 004270          338 FRLFSV  343 (764)
Q Consensus       338 i~i~d~  343 (764)
                      |+.+++
T Consensus       403 Ir~i~~  408 (409)
T 3hrp_A          403 IRKYAV  408 (409)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.38  E-value=2.5e-09  Score=110.79  Aligned_cols=297  Identities=8%  Similarity=0.039  Sum_probs=191.8

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCC---------Ccce-EEEEEeCCeEEEEECC-eEEEEec--CceEEEecc
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQL---------PKKI-RALASYRDYTFAAYGN-HIAVVKR--AHQVATWSR   91 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~~~I-~~~~~~~~~~~~a~g~-~i~vw~~--~~~~~~~~~   91 (764)
                      .++.+.+++.++.+..||.++++.+......         ...+ ..++...+.+|+++.+ .|+.+|.  ++.+-+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            4566777777899999999999988655321         2233 4566777788888754 5999995  455544433


Q ss_pred             cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccc-----cEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270           92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT-----PTCIMHPDTYLNKVIVGSQEGSLQLW  166 (764)
Q Consensus        92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~l~~~~~dg~i~iw  166 (764)
                      ...........+..++.++.++.|..+|..+++.    +..........     ...+..  +  ..+++++.++.+..+
T Consensus       132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~--~--~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTA--F--GAAVVGGDNGRVSAV  203 (376)
T ss_dssp             SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEE--T--TEEEECCTTTEEEEE
T ss_pred             CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEE--C--CEEEEEcCCCEEEEE
Confidence            3322223345677888899999999999999887    33333221110     111222  2  478889999999999


Q ss_pred             eCCCCeEEEEEcCCCCC----eE---EEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          167 NISTKKKLYEFKGWGSS----IS---SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       167 d~~~~~~~~~~~~h~~~----i~---~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      |..+|+.+.........    +.   .+..+|  .+..+.+++.+|.+..+|..+|+.+......   ....+...  +.
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~--~~  278 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD--GN  278 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE--TT
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE--CC
Confidence            99999998887642110    00   011111  2467888888999999999999988776532   34444443  44


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                       .++.++.++.|..+|..+++.+..........+......  +..|+.++.+|.+.++|..+.    +.+.........+
T Consensus       279 -~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG----~~~~~~~~~~~~~  351 (376)
T 3q7m_A          279 -RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG----RFVAQQKVDSSGF  351 (376)
T ss_dssp             -EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC----CEEEEEECCTTCB
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCcc
Confidence             577788899999999999988766552222233333332  457888888999999987665    3333332222222


Q ss_pred             eeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          318 LCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      ...... .+..|+.++.+|.|..|+
T Consensus       352 ~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          352 QTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             eeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            221111 245788889999999886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.3e-10  Score=116.55  Aligned_cols=192  Identities=11%  Similarity=0.027  Sum_probs=134.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE----EeC------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS----AGY------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s----~~~------  494 (764)
                      ..+..++++++|+++++...++.|.+|+.. +........ .   .......+..++++++|+++++    +..      
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~-~---~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR-Y---AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE-E---TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec-c---CCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence            567889999999977766666899999986 543222110 0   0011234678999999998886    321      


Q ss_pred             -------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC------CeEEEEEccCCeEE--EEe-ecCCC
Q 004270          495 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALRMV--RKF-EGHTD  558 (764)
Q Consensus       495 -------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d------~~i~v~d~~~~~~~--~~~-~~h~~  558 (764)
                             .+.|..+|..+++..... .......++|+||++.|+++...      +.|++|++..+...  ..+ ....+
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence                   256777777667655444 33566789999999988877665      78999998765421  112 11234


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ....++++++|++.++. .++ |.+|+. +|+.+..+..+..+.+++|+|+++.|..++.++  ++-.+
T Consensus       240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~--l~~~~  303 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC--LWMLP  303 (305)
T ss_dssp             CCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE--EEEEE
T ss_pred             CCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe--EEEEE
Confidence            46779999999955544 454 999997 688888888877899999999999888887654  55443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.37  E-value=1.1e-10  Score=122.39  Aligned_cols=309  Identities=11%  Similarity=0.086  Sum_probs=200.5

Q ss_pred             EEEEEcCCeEEEEEccCCceEEEEeccC--------------------------------------CCCEEEEEEee---
Q 004270          196 VAVGCSDGKIHVHNVRYDEELVTFTHSM--------------------------------------RGAVTALAFSS---  234 (764)
Q Consensus       196 la~g~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------------~~~v~~l~fs~---  234 (764)
                      +.+|+..|.++|+-+.+++.++.+....                                      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            5678888999999999888877764110                                      11222344454   


Q ss_pred             --CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE-e-cCCCEEEEEc------------------CCCcE
Q 004270          235 --DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-F-ANEPVLMSAS------------------ADNSI  292 (764)
Q Consensus       235 --d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~-~-~~~~~l~s~~------------------~d~~i  292 (764)
                        ||++++++...++.|.+.|+.+.+....+.......+..+++ . |++.++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              888555555567789999999999888555334456888888 4 8999998884                  24578


Q ss_pred             EEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE-EEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR-LFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      .+.|.++.    +......--. ....++++|+|+++++++.+...- ..+..+.                         
T Consensus       178 tvID~~t~----~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~-------------------------  227 (595)
T 1fwx_A          178 TAVDADKW----EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA-------------------------  227 (595)
T ss_dssp             EEEETTTT----EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred             EEEECCCC----eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence            88877754    3444333212 567889999999999988664210 0000000                         


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~  451 (764)
                                               .....+.+.+.....                   .+.++|++...    +.|.+.
T Consensus       228 -------------------------~~~d~v~V~~~~~~~-------------------~~v~~Gk~~~i----~~V~VI  259 (595)
T 1fwx_A          228 -------------------------AEMDHIVVFNIAEIE-------------------KAIAAGDYQEL----NGVKVV  259 (595)
T ss_dssp             -------------------------CSEEEEEEEEHHHHH-------------------HHHHHTCSEEE----TTEEEE
T ss_pred             -------------------------cccceEEEeecccee-------------------EeccCCCeeEE----CcEEEE
Confidence                                     000111122211110                   01223443333    558999


Q ss_pred             ECcC--Ccc-cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCC------------eeeeEecC
Q 004270          452 NLQS--GIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVG  515 (764)
Q Consensus       452 ~~~~--~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~------------~~~~~~~~  515 (764)
                      |..+  +.. ...+.         -.....++.++|||++++.++ .+.+|.++|+.+.+            ........
T Consensus       260 D~~~~~~~~~~~~Ip---------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          260 DGRKEASSLFTRYIP---------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             ECSGGGCCSSEEEEE---------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             eCcccCCceeEEEEe---------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence            9987  443 23332         233556899999999887766 67899999999653            45566666


Q ss_pred             cceEEEEEeecCCEEEEEeCCCeEEEEEccC----------CeEEEEeecCCCCe-----eEEEEcCCCcEEEEEeC---
Q 004270          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRI-----TDFCFSEDGKWLLSSGM---  577 (764)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~----------~~~~~~~~~h~~~i-----~~l~~s~dg~~l~s~s~---  577 (764)
                      .....++|+++|....+..-|+.|.+||+++          .+.+.++..|-.+-     ..+.++|||+||+++..   
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            8899999999994445566799999999987          66788887765432     23456899999998753   


Q ss_pred             CCc----------EEEEEcCccce
Q 004270          578 DGS----------LRIWDVILARQ  591 (764)
Q Consensus       578 dg~----------i~iwd~~~~~~  591 (764)
                      |+.          -.++|+..+++
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             cccccCCCCCCCcceEEEcCCCcE
Confidence            543          27899966553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=99.36  E-value=3.8e-06  Score=97.97  Aligned_cols=564  Identities=12%  Similarity=0.059  Sum_probs=308.0

Q ss_pred             CCCcceEEecCCeEEEEEEeCCeEEEEecCCC--------eEEEecCCCCcceEEEEEeC------CeEEEEECCe----
Q 004270           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKL--------NLVLVGPQLPKKIRALASYR------DYTFAAYGNH----   76 (764)
Q Consensus        15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~--------~~~~~~~~~~~~I~~~~~~~------~~~~~a~g~~----   76 (764)
                      ..+|-++.+.+++++.++|.-|-=.+|.+...        +++...+ .-+||..+++-.      ...++++|..    
T Consensus       326 ~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs  404 (1158)
T 3ei3_A          326 TSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS  404 (1158)
T ss_dssp             CSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred             ccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence            45677888888889999998555556665543        3444443 357899888753      2566666643    


Q ss_pred             EEEEecCceE---EE--ecccccceEEEEE-----eCCEEEEEecCCcEEEEEccCCcccccceeeEecC--CccccEEE
Q 004270           77 IAVVKRAHQV---AT--WSRHSAKVNLLLL-----FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCI  144 (764)
Q Consensus        77 i~vw~~~~~~---~~--~~~h~~~v~~l~~-----~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~  144 (764)
                      +++...+-..   ..  +.+ -..+..+..     ...+|+....+.+ .|+.+...+.     ..++..  .....+++
T Consensus       405 L~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~v-----eev~~~gf~~~~~TL~  477 (1158)
T 3ei3_A          405 LRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEV-----EETELMGFVDDQQTFF  477 (1158)
T ss_dssp             EEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEE-----EEECCTTCCSSSCEEE
T ss_pred             EEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCcc-----cccccccccCCCCcEE
Confidence            8888765332   22  332 244555542     2467777666655 5666643221     222111  01112222


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC
Q 004270          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM  223 (764)
Q Consensus       145 ~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~  223 (764)
                      +..-+. +.++=....+ |++.+....+.+..++.. ...|...+.+.  ..++.++ ++.+.++.+..++.........
T Consensus       478 ~~~l~~-~~ivQVt~~~-Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l  552 (1158)
T 3ei3_A          478 CGNVAH-QQLIQITSAS-VRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEM  552 (1158)
T ss_dssp             EEEETT-TEEEEEESSC-EEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEcCC-CeEEEEecCE-EEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCC
Confidence            221111 3566565554 888887767778777643 34677777664  4666665 6788888887664332222223


Q ss_pred             CCCEEEEEEeeCC-----CCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEE
Q 004270          224 RGAVTALAFSSDG-----QPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW  295 (764)
Q Consensus       224 ~~~v~~l~fs~d~-----~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw  295 (764)
                      ...|.|+++.|..     ..++++|.. |++|+|+++.+.+.+.....+......++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            5689999998642     238999996 99999999987766654432222344444443  234588899999999888


Q ss_pred             EecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (764)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (764)
                      .++...+...-.+...--..++.-..+...+..-+.+..++...++.-.. ..  .+                ..+...+
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l--~~----------------s~l~~~~  693 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KL--VF----------------SNVNLKE  693 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SE--EE----------------EEBSSSC
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ce--EE----------------eccChHH
Confidence            88765443322222212234555444544444433344455555544221 10  00                0111112


Q ss_pred             eeEeeeccccccc-ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 004270          376 VIAFDCAEIRERD-WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---------  445 (764)
Q Consensus       376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---------  445 (764)
                      +..+..-  .... .+.++...  ++.+++..+.+..  ....+.. .-...++.++++|..+.++++..+         
T Consensus       694 v~~~~~F--~se~~~~g~v~~~--~~~LrI~~i~~~~--~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~  766 (1158)
T 3ei3_A          694 VNYMCPL--NSDGYPDSLALAN--NSTLTIGTIDEIQ--KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG  766 (1158)
T ss_dssp             CCEEEEE--CCSSSTTEEEEEC--SSCEEEEEECCSS--SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred             hceEecc--CcccCCCcEEEEc--CCceEEEEecccC--CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence            2111111  1111 12333222  2346666554321  1111100 112577888888887776665432         


Q ss_pred             ----------------------------------------CcEEEEECcCCcccceecCccccccccccCcEEEEE---E
Q 004270          446 ----------------------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA---C  482 (764)
Q Consensus       446 ----------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~  482 (764)
                                                              +.|+++|..+.+....+..       .....+.+++   |
T Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l-------~~nE~~~sv~~v~~  839 (1158)
T 3ei3_A          767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF-------LQNEYALSLVSCKL  839 (1158)
T ss_dssp             EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC-------CTTEEEEEEEEECC
T ss_pred             cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC-------CCCcceEEEEEEEE
Confidence                                                    1244455444444333321       2223344444   3


Q ss_pred             CCC-CCEEEEEe----------CCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          483 DST-NTLMISAG----------YHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       483 ~~~-~~~l~s~~----------~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      ..+ ..+++.|.          ..|.|.+|++..+++  +...+..+++++++--. | +|++|- ...|++|++...+.
T Consensus       840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~i-g~~l~vy~l~~~~~  916 (1158)
T 3ei3_A          840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASI-NSTVRLYEWTTEKE  916 (1158)
T ss_dssp             TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEE-TTEEEEEEECTTSC
T ss_pred             ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEc-CCEEEEEECCCCce
Confidence            332 46777775          347899999875543  33334557888876542 4 555544 57899999987654


Q ss_pred             EE-EeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEE--EcCccceEEEEeeCC--ceEEEEEcCCCCeEEEEEeCCCeEE
Q 004270          550 VR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW--DVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNGVY  624 (764)
Q Consensus       550 ~~-~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~--~v~~l~~sp~g~~lat~~~d~~~i~  624 (764)
                      ++ ....+ ..|..+.....+.+++.|+.-..|.+.  +...+++...-+...  .++++.|-.++ .++.+..+++ +.
T Consensus       917 L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~  993 (1158)
T 3ei3_A          917 LRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LF  993 (1158)
T ss_dssp             EEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EE
T ss_pred             EEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EE
Confidence            44 22112 224433333356788888866666664  444455444433323  38888887654 6666777774 88


Q ss_pred             EEeccc
Q 004270          625 LWVNRC  630 (764)
Q Consensus       625 lW~~~~  630 (764)
                      +.....
T Consensus       994 vl~~~~  999 (1158)
T 3ei3_A          994 VCQKDS  999 (1158)
T ss_dssp             EEEECT
T ss_pred             EEecCC
Confidence            776553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=5.8e-10  Score=111.17  Aligned_cols=232  Identities=9%  Similarity=0.055  Sum_probs=155.0

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      ..-..+..|++++..++++...++.|..||..+++.. .+.  ....+.+++++++++++++.  ++.|.+|+.+..  .
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g--~   84 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT--MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ--S   84 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE--CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT--E
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe--CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC--c
Confidence            3456788999976547778778899999999887653 332  45789999999999955554  567888876543  1


Q ss_pred             ceeeEeccC--CCCCCeeEEEecCCCEEEEEeCC---------CcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270          304 PRLLRFRSG--HSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       304 ~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      .+.+.....  ....++.++++|+|++.++....         ..-.+|.+........                     
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---------------------  143 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---------------------  143 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---------------------
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---------------------
Confidence            122222111  12346789999999866654322         2234444322110000                     


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERF  451 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~  451 (764)
                                                     +.                ........++++|+|+.+++. +.++.|.+|
T Consensus       144 -------------------------------~~----------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~  176 (297)
T 3g4e_A          144 -------------------------------YF----------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAF  176 (297)
T ss_dssp             -------------------------------EE----------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             -------------------------------Ee----------------eccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence                                           00                001446789999999977554 557899999


Q ss_pred             EC--cCCccc--ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe-e
Q 004270          452 NL--QSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-R  525 (764)
Q Consensus       452 ~~--~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s-~  525 (764)
                      ++  .++...  ..+.     ....+.....+++++++|++.++....+.|..||..+++.+..+..+ ..+++++|. |
T Consensus       177 ~~d~~~G~~~~~~~~~-----~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~  251 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVY-----KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK  251 (297)
T ss_dssp             EECTTTCCEEEEEEEE-----ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred             eccCCCCcccCcEEEE-----ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence            87  455432  1111     01134467889999999998888888889999999999999988877 689999998 8


Q ss_pred             cCCEEEEEeC
Q 004270          526 VNGLLATVAD  535 (764)
Q Consensus       526 ~~~~la~~~~  535 (764)
                      +++.|.+++.
T Consensus       252 d~~~L~vt~~  261 (297)
T 3g4e_A          252 NYSEMYVTCA  261 (297)
T ss_dssp             GGCEEEEEEB
T ss_pred             CCCEEEEEcC
Confidence            8887776654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.34  E-value=1.5e-09  Score=120.97  Aligned_cols=296  Identities=11%  Similarity=0.096  Sum_probs=192.0

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc----------c-eEEEEEeCCeEEEEE-CCeEEEEec--CceEEEecc
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK----------K-IRALASYRDYTFAAY-GNHIAVVKR--AHQVATWSR   91 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~-I~~~~~~~~~~~~a~-g~~i~vw~~--~~~~~~~~~   91 (764)
                      ++.+.+++.++.+.-+|..+|+.+........          . -..+++..+.+|+++ .+.|+.+|.  ++.+-+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            55666677788999999999999987643211          1 134567777888877 455999985  566554332


Q ss_pred             --cc---cceE-EEEEeCCEEEEEe------cCCcEEEEEccCCcccccceeeEe-------------------------
Q 004270           92 --HS---AKVN-LLLLFGEHILSID------IDGNMFIWAFKGIEENLAPVGHVK-------------------------  134 (764)
Q Consensus        92 --h~---~~v~-~l~~~g~~l~s~~------~dg~v~vWd~~~~~~~~~~~~~~~-------------------------  134 (764)
                        +.   ..+. +-...+..++.++      .+|.|..||..+++....... ..                         
T Consensus       150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~w~  228 (689)
T 1yiq_A          150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT-VPGDPKLPPEGKGMEIAAKTWFGDAYV  228 (689)
T ss_dssp             CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES-SCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred             cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc-cCCCcccccccccccccccccCCceee
Confidence              11   1111 1112355555554      368899999999987332110 00                         


Q ss_pred             ---cCCccccEEEEeCCCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEEcC--CC-------CC
Q 004270          135 ---LDDKFTPTCIMHPDTYLNKVIVGSQEGS-------------------LQLWNISTKKKLYEFKG--WG-------SS  183 (764)
Q Consensus       135 ---~~~~~~~~~~~~p~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~  183 (764)
                         .........++.|+.  +.+++++.++.                   |..||.++|+.+..++.  |.       .+
T Consensus       229 ~~~~g~~~w~~~~~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          229 EQGGGGTAWDSFAYDPEL--NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             ecCCCCccccceeEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence               000111246688877  78999988764                   99999999999998864  21       22


Q ss_pred             eEEEEEcCCCC---EEEEEEcCCeEEEEEccCCceEEEEeccCCCCE---------------------------------
Q 004270          184 ISSCVSSPALD---VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV---------------------------------  227 (764)
Q Consensus       184 i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v---------------------------------  227 (764)
                      ........+|+   .++.++.+|.++++|..+|+.+...........                                 
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            22223333564   788999999999999999998865543211111                                 


Q ss_pred             -----EEEEEeeCCCCEEEEEeC---------------------------------------------CCcEEEEECCCc
Q 004270          228 -----TALAFSSDGQPLLASGAS---------------------------------------------SGVISIWNLEKR  257 (764)
Q Consensus       228 -----~~l~fs~d~~~~l~sg~~---------------------------------------------dg~i~iwd~~~~  257 (764)
                           ..++|+|+.. ++++...                                             +|.|..||+.++
T Consensus       387 Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG  465 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ  465 (689)
T ss_dssp             CSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred             cccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence                 1268888877 6665421                                             377999999999


Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEE
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s  331 (764)
                      +.+....  +..++..-.+...+.+++.++.|+.++.||.+++    +.+..+. ++.....-+.|..+|+..+.
T Consensus       466 ~~~W~~~--~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          466 QAAWEVP--YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG----EKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEeEcc--CCCCccCccceECCCEEEEECCCCcEEEEECCCC----ccceeeeCCCCcccCceEEEECCEEEEE
Confidence            9988887  3334444466667889999999999999988776    3443332 33333345777778865443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=6.6e-11  Score=120.73  Aligned_cols=264  Identities=10%  Similarity=0.034  Sum_probs=168.1

Q ss_pred             cCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEEEecCCCEEEEEeC-----C
Q 004270          269 NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQ-----D  335 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~~~-----d  335 (764)
                      ..+..++++++++++++..  .++.+++|.++  .+  .+..      ...+|...+..++++++++++++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QD--GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TT--EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CC--CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            6789999999999888864  23437777776  22  2221      11245578899999999876555433     4


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                      +.|.+||+.+++....+.                                                     +..      
T Consensus        93 ~~i~~~d~~tg~~~~~~~-----------------------------------------------------~~~------  113 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIY-----------------------------------------------------LPP------  113 (343)
T ss_dssp             CEEEEEETTTTEEEEEEE-----------------------------------------------------CCT------
T ss_pred             CeEEEEECCCCeEEEEEE-----------------------------------------------------CCh------
Confidence            678888876554322211                                                     000      


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEe----cCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEE
Q 004270          416 ILRPCPENPTAVKACTISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMI  490 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~  490 (764)
                         ....+...+..+++++++..++++.    .++.|.+||+.++.....+.        .|..... ...+.+++..+.
T Consensus       114 ---~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~--------~~~~~~~~~~~~~~~g~~~~  182 (343)
T 2qe8_A          114 ---PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ--------GYPGIAPEDIDLVIDGVPVQ  182 (343)
T ss_dssp             ---TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------TCTTTSCCSCCCEETTEECB
T ss_pred             ---hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------CCCcccccccceeECCEEEE
Confidence               0001224567899998765655544    57899999999887655442        2211100 023344666677


Q ss_pred             EEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC-eEEEEEccC---Ce-----EEE--EeecCCCC
Q 004270          491 SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVA---LR-----MVR--KFEGHTDR  559 (764)
Q Consensus       491 s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~-~i~v~d~~~---~~-----~~~--~~~~h~~~  559 (764)
                      +.+.++.++.|.             ..+..++++|+++.|+++..++ .+..++...   +.     ...  ...++.+.
T Consensus       183 ~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  249 (343)
T 2qe8_A          183 IGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI  249 (343)
T ss_dssp             EECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred             eccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence            777788776653             2457899999999888887665 555555321   10     000  11234456


Q ss_pred             eeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC
Q 004270          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       560 i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d  619 (764)
                      ...++++++|+++++...++.|.+||..+|+.......+  ..+.+++|.++|.++++....
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            778999999999999889999999998667654444332  238999999999887777544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=1.9e-10  Score=129.33  Aligned_cols=246  Identities=15%  Similarity=0.111  Sum_probs=147.6

Q ss_pred             CCCEEEEEEeeCCCCEEE-EEeCC----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc-------
Q 004270          224 RGAVTALAFSSDGQPLLA-SGASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-------  291 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~-sg~~d----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~-------  291 (764)
                      ...+..++|||||+ +|| +.+..    ..|++||+.+++.+....  +......++|+ |++.|+.++.+..       
T Consensus       128 ~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          128 TTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             CCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             cEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            34688899999999 555 33333    479999999998654322  22224678999 9999988887743       


Q ss_pred             ------EEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270          292 ------IKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (764)
Q Consensus       292 ------i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  364 (764)
                            |++|++.+......++..... |......+.++|||++|+.....+.                           
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------------------------  256 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST---------------------------  256 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---------------------------
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---------------------------
Confidence                  777766554333334443333 4445566777777776654332110                           


Q ss_pred             cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (764)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (764)
                                                                                                     .
T Consensus       257 -------------------------------------------------------------------------------~  257 (693)
T 3iuj_A          257 -------------------------------------------------------------------------------S  257 (693)
T ss_dssp             -------------------------------------------------------------------------------S
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           0


Q ss_pred             CCcEEEEECcCCc-ccceecCccccccccccCcEEEEEECCCCCEEEEEe-C---CCeEEEEECCCCCe--eeeE-ecCc
Q 004270          445 GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-Y---HGDIKVWDFKGRDL--KSRW-EVGC  516 (764)
Q Consensus       445 ~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~---dg~v~iwd~~~~~~--~~~~-~~~~  516 (764)
                      ...|+++++.++. ....+.        .+....... +++++..|+..+ .   .+.|..+++.++..  ...+ .+..
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~--------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQ--------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEE--------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             CcEEEEEECCCCCCceEEEe--------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            1133333333321 111111        222333333 445555444333 3   36799999987754  2333 3334


Q ss_pred             ceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCC----CcEEEEEcCc
Q 004270          517 SLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDVIL  588 (764)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~d----g~i~iwd~~~  588 (764)
                      .+.  .|+++++.|+....++   .|++||+..+. .+.+. .+.+.+..+.++++++.|+....+    ++|+.||+.+
T Consensus       329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            443  8999999887776544   78999988554 44443 344567788889998877655444    7899999988


Q ss_pred             cce
Q 004270          589 ARQ  591 (764)
Q Consensus       589 ~~~  591 (764)
                      ++.
T Consensus       406 g~~  408 (693)
T 3iuj_A          406 GAI  408 (693)
T ss_dssp             CCE
T ss_pred             CeE
Confidence            764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=3.5e-10  Score=113.27  Aligned_cols=255  Identities=12%  Similarity=0.043  Sum_probs=154.7

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      ..+..+..+ ........|+++|+.+++++..++.|..|+. +++. ..+. .+...+..+++.++|+++++...++.|.
T Consensus        35 ~~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           35 ARLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEE
Confidence            344445444 4567899999999867788888899999998 4543 3343 4566789999999999777766667888


Q ss_pred             EEEecCCCCCceeeEe-ccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          294 MWIFDTTDGDPRLLRF-RSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~-~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      .|+.+   +....+.. ..+ ....+..+++.++|+..++-..-|+..-+.  .....                      
T Consensus       111 ~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~--~~~~~----------------------  163 (305)
T 3dr2_A          111 RSDAD---GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ--GCPAD----------------------  163 (305)
T ss_dssp             EECTT---SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG--SCCCC----------------------
T ss_pred             EECCC---CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc--ccccc----------------------
Confidence            88654   22222211 111 124577899999988777521001000000  00000                      


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC------
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG------  445 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~------  445 (764)
                                             .....+.++.++..+.......      .......++++|+|+.++++...      
T Consensus       164 -----------------------~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~~~~~  214 (305)
T 3dr2_A          164 -----------------------PELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQGHGS  214 (305)
T ss_dssp             -----------------------CSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC---CC
T ss_pred             -----------------------cccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCcCCCC
Confidence                                   0000011122221111110000      01456789999999988887765      


Q ss_pred             CcEEEEECcCCccc--ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270          446 GWIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  523 (764)
Q Consensus       446 g~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~  523 (764)
                      +.|.+|++..+...  ..+.       ....+...+++++++|++.++ ..+ .|.+|+. .++.+..+..+..+.+++|
T Consensus       215 ~~i~~~~~~~~~l~~~~~~~-------~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f  284 (305)
T 3dr2_A          215 VEITAFAWRDGALHDRRHFA-------SVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTF  284 (305)
T ss_dssp             CEEEEEEEETTEEEEEEEEE-------CCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEE
T ss_pred             CEEEEEEecCCCccCCeEEE-------ECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEE
Confidence            78999998765411  1111       112344567899999995554 444 4999997 5777777777777899999


Q ss_pred             eecCCEEEEEeCCCe
Q 004270          524 HRVNGLLATVADDLV  538 (764)
Q Consensus       524 s~~~~~la~~~~d~~  538 (764)
                      +++++.|.+++.++.
T Consensus       285 ~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          285 DQAQQRLFITGGPCL  299 (305)
T ss_dssp             CTTSCEEEEEETTEE
T ss_pred             eCCCCEEEEEcCCeE
Confidence            999998888887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.29  E-value=2.1e-11  Score=124.06  Aligned_cols=300  Identities=14%  Similarity=0.078  Sum_probs=188.2

Q ss_pred             EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  265 (764)
                      +..+..++ .|.+++.++.|..|| .+++.+..+..+ ...+.++...++|.  +..++.+  |..+|. +++...... 
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~-   94 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFD-   94 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSC-
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEE-
Confidence            34454555 466777788899999 888876655443 34557777777775  5555544  888886 666554443 


Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      ..........+.  +..+..++.++.+..++.+ .    ........+...+.++...+++. +..++.++.+..+|.. 
T Consensus        95 ~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-  165 (330)
T 3hxj_A           95 TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G----TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-  165 (330)
T ss_dssp             C-----CCEEEE--TTEEEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-
T ss_pred             CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C----CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-
Confidence            222223333333  4467778888888888654 2    22323333444566667776776 6667777888888865 


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      +........                                                                    ...
T Consensus       166 g~~~~~~~~--------------------------------------------------------------------~~~  177 (330)
T 3hxj_A          166 GTEKWRFKT--------------------------------------------------------------------NDA  177 (330)
T ss_dssp             SCEEEEEEC--------------------------------------------------------------------SSC
T ss_pred             CCEeEEEec--------------------------------------------------------------------CCC
Confidence            322111100                                                                    012


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~  505 (764)
                      .+.++.+.++|.. .+++  +.+..+| .++.....+.        .....+.++..++++. +..++.++.+..+|. +
T Consensus       178 ~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~--------~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~  243 (330)
T 3hxj_A          178 ITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFY--------AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D  243 (330)
T ss_dssp             CCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEEC--------CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred             ceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEc--------cCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence            3444556667764 4455  8899999 6766655543        3345677888888876 555666788888874 5


Q ss_pred             CCeeeeEecCcc-eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270          506 RDLKSRWEVGCS-LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (764)
Q Consensus       506 ~~~~~~~~~~~~-i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw  584 (764)
                      ++.+..+..... +..+.+.+ +..|.+++.++.+..+|. +++.+..+......+.++...++|++. .++.+|.+++.
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~  320 (330)
T 3hxj_A          244 GTEKWRFKTGKRIESSPVIGN-TDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYAL  320 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECT-TSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEE
T ss_pred             CCEeEEeeCCCCccccceEcC-CCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEE
Confidence            666665554432 33444443 446777888889999996 677777776666678888888888754 58889999988


Q ss_pred             EcCc
Q 004270          585 DVIL  588 (764)
Q Consensus       585 d~~~  588 (764)
                      ..+.
T Consensus       321 ~~~~  324 (330)
T 3hxj_A          321 FNLE  324 (330)
T ss_dssp             EC--
T ss_pred             eccc
Confidence            7653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.29  E-value=1.1e-10  Score=118.79  Aligned_cols=294  Identities=16%  Similarity=0.062  Sum_probs=194.5

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeE-EEEECCeEEEEecC-ceEEEecccccceEEEEEe
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT-FAAYGNHIAVVKRA-HQVATWSRHSAKVNLLLLF  102 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~-~~a~g~~i~vw~~~-~~~~~~~~h~~~v~~l~~~  102 (764)
                      .+..+.+++.++.+..|| .+++.+.........+.+++..+++. ++++.+ |..+|.. +.+..+..+..........
T Consensus        29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~~~~~~  106 (330)
T 3hxj_A           29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTKKAIVSDFTIF  106 (330)
T ss_dssp             TTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC-----CCEEEE
T ss_pred             cCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECCCCcEEEEEECCCCcccCceEE
Confidence            455666777788999999 88888777654445567888876654 455555 8888753 2222222222222333345


Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS  182 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  182 (764)
                      +..|..++.++.+..+|.. ++.    ..............+..+++   .+++++.++.|..+|.. ++.+..+.....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTE----KWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCE----EEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            7888888889999999988 554    33333344444445555555   48888888999999998 888888876667


Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~  262 (764)
                      .+.++...+++.+.+ ++  +.|..+| .+++.+..+... ...+.++...++|.  +..++.++.|..+|. +++....
T Consensus       178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~  249 (330)
T 3hxj_A          178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWR  249 (330)
T ss_dssp             CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEE
T ss_pred             ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEE
Confidence            788888888877544 44  7899999 778877776654 45688888888876  566777888988884 5555555


Q ss_pred             eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      .. .....+..+...+++ .|..++.++.+..++.   ++  +.+.........+.++...++|+ |..++.+|.+++..
T Consensus       250 ~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~---~g--~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          250 FK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP---DG--TEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF  321 (330)
T ss_dssp             EE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT---TS--CEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred             ee-CCCCccccceEcCCC-eEEEecCCCCEEEECC---CC--cEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence            54 333344455555555 5667777888888863   22  23333333455667777767775 66688899888876


Q ss_pred             eec
Q 004270          343 VIQ  345 (764)
Q Consensus       343 ~~~  345 (764)
                      ...
T Consensus       322 ~~~  324 (330)
T 3hxj_A          322 NLE  324 (330)
T ss_dssp             C--
T ss_pred             ccc
Confidence            543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.28  E-value=3e-10  Score=127.58  Aligned_cols=192  Identities=8%  Similarity=0.062  Sum_probs=131.3

Q ss_pred             EEEEEccCCCEEEEEecCC-------------cEEEEECcCCcccceecCcccccccc-ccCcEEEEEECCCCCEEEEEe
Q 004270          428 KACTISACGNFAVLGTAGG-------------WIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~g-------------~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~  493 (764)
                      ..++|+ ||+.|+.++.+.             .|++|++.++........    .... |.....++.++|||++|+...
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~----~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF----GAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE----SCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE----ecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            356899 999998888774             399999987654322210    0013 455678899999999886544


Q ss_pred             C----CCeEEEEECCCCC-eeeeEecC-cceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeE--EEEeecCCCCee
Q 004270          494 Y----HGDIKVWDFKGRD-LKSRWEVG-CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGHTDRIT  561 (764)
Q Consensus       494 ~----dg~v~iwd~~~~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~--~~~~~~h~~~i~  561 (764)
                      .    +..|+++|+.++. ....+..+ ...... ++++++.|+..+.    .+.|.++|+.++..  .+.+..|...+.
T Consensus       253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence            2    2489999998763 33444433 333343 7777777766554    36899999988754  345666766665


Q ss_pred             EEEEcCCCcEEEEEeCCC---cEEEEEcCccceEEEEeeCC--ceEEEEEcCCCCeEEEEEeC----CCeEEEEecc
Q 004270          562 DFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVD----QNGVYLWVNR  629 (764)
Q Consensus       562 ~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~--~v~~l~~sp~g~~lat~~~d----~~~i~lW~~~  629 (764)
                        .|++++++|+....++   .|++||+. +.....+..+.  .+..+.+++++..|+....+    + .++.|++.
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~-~l~~~d~~  404 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP-TLYRFEPK  404 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC-EEEEECTT
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC-EEEEEECC
Confidence              8999999888766543   68999987 44555555433  47788889999888777655    4 68888874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.26  E-value=4.1e-09  Score=106.58  Aligned_cols=139  Identities=16%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             EEEECCCCCEEEEEe-------------------CCCeEEEEECCCCCeeeeEecC---cceEEEEE--eecCCEEEEEe
Q 004270          479 GVACDSTNTLMISAG-------------------YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVY--HRVNGLLATVA  534 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~-------------------~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~--s~~~~~la~~~  534 (764)
                      .+.|+|+++.++++.                   .+.+|.+||+.+++.+.++...   .....+.|  +|+++++.+++
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence            456677777776664                   3689999999999888888875   34455555  99999988887


Q ss_pred             C------CCeEEEEEccCCeE--EEEe--ecC----------------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcC
Q 004270          535 D------DLVIRLFDVVALRM--VRKF--EGH----------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI  587 (764)
Q Consensus       535 ~------d~~i~v~d~~~~~~--~~~~--~~h----------------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~  587 (764)
                      .      +++|.+|..+.++.  ...+  ...                ......|.+|+||++|.++. ..+.|.++|+.
T Consensus       272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            4      56888777655432  1111  110                24578899999999988766 46899999986


Q ss_pred             c---cceEEEEeeCC---------------ceEEEEEcCCCCeEEEEE
Q 004270          588 L---ARQIDAIHVDV---------------SITALSLSPNMDVLATAH  617 (764)
Q Consensus       588 ~---~~~~~~~~~~~---------------~v~~l~~sp~g~~lat~~  617 (764)
                      .   .+++..+....               ....++++|||++|.++.
T Consensus       352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3   45666666541               268899999999999998

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=1.2e-08  Score=103.07  Aligned_cols=193  Identities=10%  Similarity=0.001  Sum_probs=128.0

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      ...+++|++. ..+++...++.|..||..+++.. .+. ....+.+++++|+++++++ +. ..|.+||..+++......
T Consensus        52 egp~~~~~~~-~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           52 EGPTFDPASG-TAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEETTTT-EEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred             cCCeEeCCCC-EEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEee
Confidence            3557888752 35556667889999999887654 333 2567999999999987665 44 459999998887543322


Q ss_pred             cc---CCCCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCC
Q 004270          221 HS---MRGAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADN  290 (764)
Q Consensus       221 ~~---~~~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~  290 (764)
                      ..   ....+.+++++|+|+ ++++...      .+.|..++  +++.... . .+......++|+|+++.++.+ +.++
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~-~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKL-F-ADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEE-E-EEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEe-e-CCCcccCCeEEcCCCCEEEEEECCCC
Confidence            11   123688999999998 5554432      24566666  4554332 2 244567899999999866544 5578


Q ss_pred             cEEEEEecCCCC----CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          291 SIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       291 ~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      .|.+|+++...+    ..+....+......+..+++.++|++.++...++.|..|+.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            899998762222    11223333334455678999999987777766778888876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=5.4e-09  Score=116.05  Aligned_cols=335  Identities=10%  Similarity=0.111  Sum_probs=194.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe-----------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSI-----------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i-----------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      ..|++++.++.|.-+|..+|+.+.++.......           ..+++  .+..|++++.|+.|..+|..+|+.+.++.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            579999999999999999999999986532210           11222  35678889999999999999999998887


Q ss_pred             ccCC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeeccc--c---------------------
Q 004270          221 HSMR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAH--D---------------------  268 (764)
Q Consensus       221 ~~~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h--~---------------------  268 (764)
                      ....   ..+.+--...++  .++++..      +|.|..+|.++|+.+..+....  .                     
T Consensus       145 ~~~~~~~~~~~~~P~v~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVVKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             CSCTTSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCCCCCcceecCCCEEECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            5311   111111011244  3444432      5899999999999887775210  0                     


Q ss_pred             -------cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          269 -------NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       269 -------~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                             .....+++.|+...++.++.++..  |......              +.       .+..+.    -+.|..+
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~--w~~~~~~--------------~~-------~gd~l~----~~~v~Al  275 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSP--WNREVRS--------------PG-------GGDNLY----LSSILAI  275 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHS--------------TT-------CCCCTT----TTEEEEE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCc--cccCCCC--------------CC-------CCCcee----eeeEEEE
Confidence                   011245777777777777665532  3211000              00       000000    0123333


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      |..+++..-.+.....                             ..                |+.              
T Consensus       276 D~~tG~~~W~~~~~~~-----------------------------~~----------------wd~--------------  296 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPG-----------------------------DS----------------WDF--------------  296 (668)
T ss_dssp             CTTTCCEEEEEESSTT-----------------------------CC----------------SCC--------------
T ss_pred             cCCCCceeeEeecCCC-----------------------------cc----------------ccc--------------
Confidence            3333222111100000                             00                000              


Q ss_pred             CCCCCeEEEEEccCCC---EEEEEecCCcEEEEECcCCcccceecCcccc-----------------cc-c--------c
Q 004270          422 ENPTAVKACTISACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER-----------------SN-Y--------A  472 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~---~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-----------------~~-~--------~  472 (764)
                      ....+.....+..+|+   .+++++.+|.++++|..+|+.+.........                 .. .        +
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~  376 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS  376 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence            0001222222333554   6778888888888888888876332211000                 00 0        0


Q ss_pred             cc--CcEEEEEECCCCCEEEEE------------------------------------eCCCeEEEEECCCCCeeeeEec
Q 004270          473 HN--GEVVGVACDSTNTLMISA------------------------------------GYHGDIKVWDFKGRDLKSRWEV  514 (764)
Q Consensus       473 h~--~~v~~l~~~~~~~~l~s~------------------------------------~~dg~v~iwd~~~~~~~~~~~~  514 (764)
                      ..  ..-..++++|+..+++..                                    ..+|.|..||..+++.+.....
T Consensus       377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~  456 (668)
T 1kv9_A          377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY  456 (668)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred             CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence            00  001126777776665532                                    1348899999999999988887


Q ss_pred             CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe-eEEEEcCCCc-EEEEEe
Q 004270          515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSSG  576 (764)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~-~l~s~s  576 (764)
                      ..+.....+...+.++++++.|+.++.||.++++.+..++...+.. .-+.+..+|+ |++.++
T Consensus       457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            7666666677789999999999999999999999999887653221 2345556777 444443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.17  E-value=7.8e-08  Score=104.45  Aligned_cols=380  Identities=14%  Similarity=0.124  Sum_probs=202.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe---------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSI---------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i---------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~  222 (764)
                      ..+++++.++.|.-+|.++|+.+.++......-         ..+++  .+..|++++.++.|.-+|.++|+.+.+....
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            468888875559999999999999886543210         11222  3567888999999999999999999887653


Q ss_pred             CCC---CEE-EEEEeeC---CCCEEEEEe------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          223 MRG---AVT-ALAFSSD---GQPLLASGA------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       223 ~~~---~v~-~l~fs~d---~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                      ...   .+. +.....+   |+..+++++      .+|.|..+|.++|+.+.... .  ..   ..+.|++........+
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~-~--~~---~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP-F--VE---GHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE-S--ST---TCEEEETTEEEEESSC
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC-C--Cc---cccccccCcccccccc
Confidence            210   111 1112222   321455544      37899999999999887654 1  11   1122333333333323


Q ss_pred             CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      .....|..+......+......+....-..+++.|+...++.+..+...  |.....    ....+              
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~--~~~~~r----~~~gg--------------  280 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGP--WNTWAR----TAKGG--------------  280 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSS--SCGGGG----SCTTS--------------
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCc--ccCccc----ccCCC--------------
Confidence            3333443220000001100011111222456788877777777654321  221000    00000              


Q ss_pred             hhccCceeEeeecccccccc-cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-cCCC---EEEEEec
Q 004270          370 ELKLKPVIAFDCAEIRERDW-CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGN---FAVLGTA  444 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~---~l~~g~~  444 (764)
                          .+.. +      ...+ ..+++.....+.+ +|..+........   ......++ -+... .+|+   .++.++.
T Consensus       281 ----~~~~-~------d~~~~~~v~AlD~~TG~~-~W~~q~~~~d~wd---~~~~~~p~-l~~~~~~~G~~~~~v~~~~~  344 (582)
T 1flg_A          281 ----NPHD-Y------DSLYTSGQVGVDPSSGEV-KWFYQHTPNDAWD---FSGNNELV-LFDYKAKDGKIVKATAHADR  344 (582)
T ss_dssp             ----CSTT-C------CCTTCSEEEEECTTTCCE-EEEEESSTTCCSC---CCCCCCCE-EEEEECSSSCEEEEEEEECT
T ss_pred             ----cccc-c------CCcccceEEEEeCCCCCE-EEEEeCCCCCccc---ccCCCCcE-EEeeecCCCCEEEEEEEECC
Confidence                0000 0      0000 0111111111211 1332211000000   00001122 12222 4674   7888999


Q ss_pred             CCcEEEEECcCCcccceecCccccc-----------------cc---------cccC-----------cEEEEEECCCCC
Q 004270          445 GGWIERFNLQSGISRGSYLDMSERS-----------------NY---------AHNG-----------EVVGVACDSTNT  487 (764)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~-----------------~~---------~h~~-----------~v~~l~~~~~~~  487 (764)
                      +|.++++|..+|+.+..+.......                 ..         ....           .-..++++|+..
T Consensus       345 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  424 (582)
T 1flg_A          345 NGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG  424 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC
T ss_pred             CceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC
Confidence            9999999999998876554221000                 00         0000           011456777665


Q ss_pred             EEEEEe---------------------------------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe
Q 004270          488 LMISAG---------------------------------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA  534 (764)
Q Consensus       488 ~l~s~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~  534 (764)
                      +++...                                 .+|.|..||+.+++.+.+.....+...-.....+.++++++
T Consensus       425 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~  504 (582)
T 1flg_A          425 LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT  504 (582)
T ss_dssp             CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC
T ss_pred             EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC
Confidence            555432                                 26889999999999988887765554444445688899999


Q ss_pred             CCCeEEEEEccCCeEEEEeecCCCCe-eEEEEcCCCc-EEEEE
Q 004270          535 DDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSS  575 (764)
Q Consensus       535 ~d~~i~v~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~-~l~s~  575 (764)
                      .|+.++.||.++++.+.+++...+.+ .-+.+..+|+ |+++.
T Consensus       505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            99999999999999999988654322 2367778887 44443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=9.5e-09  Score=97.80  Aligned_cols=195  Identities=7%  Similarity=-0.045  Sum_probs=145.6

Q ss_pred             CCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          425 TAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      .....+++++++ .|++++.   ++.|.++|+.+++....+..       +......+++++. ++..++.-.++.+.++
T Consensus        21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------~~~~fgeGi~~~g-~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------DDSYFGEGLTLLN-EKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEET-TEEEEEETTCSEEEEE
T ss_pred             CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------CCCcceEEEEEeC-CEEEEEEecCCEEEEE
Confidence            346889999986 5555442   57999999999998887642       2222334566652 3444555578999999


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-----CCeeEEEEcCCCcEEEEEe
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-----~~i~~l~~s~dg~~l~s~s  576 (764)
                      |..+.+.+.++... .-....+++|++.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. +|+..+...
T Consensus        92 D~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             ETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            99999999998765 22335577789888888888999999999999888876321     246788888 787666666


Q ss_pred             CCCcEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          577 MDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      .++.|.+-|..+++.+..+...              .....++|+|+++.|.+++.....++.-++..
T Consensus       170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            7889999999999999999763              23689999999988888877655677776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=3.7e-13  Score=138.51  Aligned_cols=260  Identities=8%  Similarity=-0.025  Sum_probs=142.1

Q ss_pred             CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 004270          192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI  271 (764)
Q Consensus       192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v  271 (764)
                      ++..|++++.||.|..||..+|+.+.++..   +.+.+..+..++. ++++++.||.|+.||.++++.+..........+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            567899999999999999999999988875   3455555666776 677778999999999999987665541111111


Q ss_pred             e-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          272 I-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       272 ~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      . +..+. ++..+++++.|+.+..||..++..    +.....+.    ...++|++..+++++.|+.++.||..+++...
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            1 11111 344677888899999998776633    22222222    23456678889999999999999988775443


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      .+...                                                       .               ....
T Consensus       155 ~~~~~-------------------------------------------------------~---------------~~~~  164 (369)
T 2hz6_A          155 NATYF-------------------------------------------------------D---------------YAAS  164 (369)
T ss_dssp             EEEEE-------------------------------------------------------E---------------ECCB
T ss_pred             eEecc-------------------------------------------------------c---------------ccCc
Confidence            32110                                                       0               0001


Q ss_pred             EEccC---CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEEE--EeCCCeEEEEECC
Q 004270          431 TISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMIS--AGYHGDIKVWDFK  504 (764)
Q Consensus       431 ~~s~~---g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s--~~~dg~v~iwd~~  504 (764)
                      +++.+   ...+++++.+|.+..||..+|+.+..+.         ...++. ...+++++...+.  ...++.++.+|..
T Consensus       165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---------~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~  235 (369)
T 2hz6_A          165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---------YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFM  235 (369)
T ss_dssp             CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---------CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHH
T ss_pred             cccCCccccceEEEECCCCEEEEEECCCCcEEEEec---------CCCceEEEEEecCCceEeccceeecccceeeeehh
Confidence            11121   1457778899999999999998876653         223333 3455566643211  0114456666666


Q ss_pred             CCC----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          505 GRD----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       505 ~~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      +++    .+..+.....+..  ..-.+..+++++.+|.++.++..
T Consensus       236 tG~~~~~~~W~~~~~~~~~s--p~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          236 SGEVGRITKWKYPFPKETEA--KSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHHHHHHTSCCCCCCHHHH--HHHSEEEECBEECSSCEECCEEE
T ss_pred             cCCcccceeeeeccCccccc--cccccceEEEecccCCEEecCcc
Confidence            665    4444443332210  00134577788888888887764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=2.5e-11  Score=124.79  Aligned_cols=167  Identities=8%  Similarity=-0.078  Sum_probs=93.6

Q ss_pred             ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 004270          433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR  511 (764)
Q Consensus       433 s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  511 (764)
                      ..++..+++++.+|.|+.||..+|+.+..+...       ....+. +..+. .+..+++++.|+.|+.||..+|+.+..
T Consensus        46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-------~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-------IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             ----CCEEECTTTCCEEEC-----CCSEECSCC-------HHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred             EcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-------CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            356777777889999999999998876554310       000010 00111 345677888899999999999998887


Q ss_pred             EecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCc
Q 004270          512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       512 ~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~  588 (764)
                      +..+..   ..++|++..+++++.|+.|+.||..+++.+..+..+.  ....+++++.   ..+++++.||.|+.||..+
T Consensus       118 ~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          118 LSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             ------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             ecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            766542   3456788999999999999999999998766654321  2233444432   4566788899999999999


Q ss_pred             cceEEEEeeCCceE-EEEEcCCCCe
Q 004270          589 ARQIDAIHVDVSIT-ALSLSPNMDV  612 (764)
Q Consensus       589 ~~~~~~~~~~~~v~-~l~~sp~g~~  612 (764)
                      |+.+..+....++. ...++++|..
T Consensus       193 G~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          193 GDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             CcEEEEecCCCceEEEEEecCCceE
Confidence            99999888777754 4566677753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.10  E-value=1e-07  Score=103.55  Aligned_cols=375  Identities=11%  Similarity=0.027  Sum_probs=207.3

Q ss_pred             CEEEEEeC-CCcEEEEeC-CCCeEEEEEcCCCCC-e----------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270          152 NKVIVGSQ-EGSLQLWNI-STKKKLYEFKGWGSS-I----------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (764)
Q Consensus       152 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-i----------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (764)
                      ..+++++. ++.|.-+|. .+|+.+.++...... +          ..++.  ++..|++++.|+.+..+|..+|+.+.+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            47888888 899999999 999999988643210 0          11222  356788888999999999999999988


Q ss_pred             EeccCC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeeccccc--------------------
Q 004270          219 FTHSMR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHDN--------------------  269 (764)
Q Consensus       219 ~~~~~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~~--------------------  269 (764)
                      ......   ..+.+--...++  .+++++.      +|.|..+|.++|+.+..+......                    
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~  218 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             ecCCCCCccceeccCCEEECC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence            764310   012111111244  4555554      789999999999988776521110                    


Q ss_pred             -----------------CeeEEEEecCCCEEEEEcCC----------------CcEEEEEecCCCCCceeeEeccCCC--
Q 004270          270 -----------------AIISLHFFANEPVLMSASAD----------------NSIKMWIFDTTDGDPRLLRFRSGHS--  314 (764)
Q Consensus       270 -----------------~v~~l~~~~~~~~l~s~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~h~--  314 (764)
                                       ....+++.++...++.+..+                +.|..+|.++..  ..-......|.  
T Consensus       219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~--~~W~~~~~~~d~~  296 (571)
T 2ad6_A          219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM--AKWGYQKTPHDEW  296 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC--EEEEEESSTTCSS
T ss_pred             cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc--EEEEecCCCCccc
Confidence                             00235666666666666532                246666665542  22222222221  


Q ss_pred             -----CCCeeEEEecCCC---EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270          315 -----APPLCIRFYANGR---HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (764)
Q Consensus       315 -----~~v~~i~~~~~~~---~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (764)
                           ..+.-+....+|+   .++.++.+|.+.++|..+++............-...+.    ...-.|+..-....   
T Consensus       297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d----~~~g~p~~~~~~~~---  369 (571)
T 2ad6_A          297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD----LKTGTPVRDPEFAT---  369 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC----TTTCSEEECGGGCC---
T ss_pred             ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccccc----ccCCceecccccCC---
Confidence                 1222222234674   56778889999999988876654432110000000000    00000000000000   


Q ss_pred             ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS  466 (764)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~  466 (764)
                                           .. ........+.......-..++++|+...+++...+....++.....-...      
T Consensus       370 ---------------------~~-~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g------  421 (571)
T 2ad6_A          370 ---------------------RM-DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG------  421 (571)
T ss_dssp             ---------------------CT-TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT------
T ss_pred             ---------------------CC-CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC------
Confidence                                 00 00000000000000111457889999999998877655555433210000      


Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                          ...-+.-..+..+|.+. +  ...+|.|..||..+++.+.++....++....+...+.++++++.|+.++.+|.++
T Consensus       422 ----~~~~g~~~~~~~~~~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          422 ----QFFVGATLAMYPGPNGP-T--KKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             ----SCCCCEEEEEEECTTST-T--SCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ----CccccccceeccCcccc-C--CCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence                00111111223333321 0  0246899999999999998887765555555556678888899999999999999


Q ss_pred             CeEEEEeecCCCC-eeEEEEcCCCcEEEE
Q 004270          547 LRMVRKFEGHTDR-ITDFCFSEDGKWLLS  574 (764)
Q Consensus       547 ~~~~~~~~~h~~~-i~~l~~s~dg~~l~s  574 (764)
                      ++.+.++...... -..+.+..+|+.++.
T Consensus       495 G~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          495 GKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            9999988744321 123445678875543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=3.6e-08  Score=99.75  Aligned_cols=228  Identities=11%  Similarity=0.081  Sum_probs=151.6

Q ss_pred             eCCEEEEEe-cCCcEEEEEccCCcccccceeeEe-------cCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEe
Q 004270          102 FGEHILSID-IDGNMFIWAFKGIEENLAPVGHVK-------LDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWN  167 (764)
Q Consensus       102 ~g~~l~s~~-~dg~v~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd  167 (764)
                      ++++|+..+ .++.|.|.|+.+........++++       ......-.+.+.|++   .++++..+      |.|.++|
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEEC
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEEE
Confidence            466666544 477899999976633333345552       111233455678888   44454444      6899999


Q ss_pred             CCCCeEEEEEcCCCCC---eEEEEEcCCCCEEEEEE-------------------cCCeEEEEEccCCceEEEEeccC-C
Q 004270          168 ISTKKKLYEFKGWGSS---ISSCVSSPALDVVAVGC-------------------SDGKIHVHNVRYDEELVTFTHSM-R  224 (764)
Q Consensus       168 ~~~~~~~~~~~~h~~~---i~~~~~sp~~~~la~g~-------------------~dg~i~iwd~~~~~~~~~~~~~~-~  224 (764)
                      .++++.+.++.....+   -..+.|+|+++.+++..                   ...+|.+||+.+++.+.++..+. .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999998632222   23478899999888874                   36899999999998888887642 2


Q ss_pred             CCEEEEEE--eeCCCCEEEEEe-----CCCcEEEEECCCcee--eeee--ecc---------------cccCeeEEEEec
Q 004270          225 GAVTALAF--SSDGQPLLASGA-----SSGVISIWNLEKRRL--QSVI--REA---------------HDNAIISLHFFA  278 (764)
Q Consensus       225 ~~v~~l~f--s~d~~~~l~sg~-----~dg~i~iwd~~~~~~--~~~~--~~~---------------h~~~v~~l~~~~  278 (764)
                      .....+.|  +|++++..+++-     .+++|.+|..+.++.  ...+  ...               -......+.+++
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            34556655  999994444554     677888876654421  1111  100               024578899999


Q ss_pred             CCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCC--------------CCCCeeEEEecCCCEEEEEe
Q 004270          279 NEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGH--------------SAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       279 ~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h--------------~~~v~~i~~~~~~~~l~s~~  333 (764)
                      |+++|.++.. .+.|.++++... ...+++....-.              ......++++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9998877665 689999998633 233444333221              12478999999999999887

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.07  E-value=4.3e-05  Score=83.43  Aligned_cols=510  Identities=13%  Similarity=-0.003  Sum_probs=253.5

Q ss_pred             EEECCeEEEEecCce---EEEecccccceEEEEEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEE
Q 004270           71 AAYGNHIAVVKRAHQ---VATWSRHSAKVNLLLLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI  144 (764)
Q Consensus        71 ~a~g~~i~vw~~~~~---~~~~~~h~~~v~~l~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~  144 (764)
                      .+...+|++.+....   ...+...-.....++++  ++.|+-++. .+.|..+++++....   ...+...-.....++
T Consensus        14 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---QNVVVSGLLSPDGLA   90 (619)
T ss_dssp             EECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---EEEECSSCSCEEEEE
T ss_pred             EeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---EEEEeCCCCCcCeEE
Confidence            344555666655322   11122233345556553  455555544 355777777654220   111111223456778


Q ss_pred             EeCCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEEEec
Q 004270          145 MHPDTYLNKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVTFTH  221 (764)
Q Consensus       145 ~~p~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~~~~  221 (764)
                      +.+.+  +.|+.+ ...+.|.+.+.........+...-.....+++.|.+.+|.....  .+.|...++. |.....+..
T Consensus        91 vD~~~--~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~  167 (619)
T 3s94_A           91 CDWLG--EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN  167 (619)
T ss_dssp             EETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEEC
T ss_pred             EEecC--CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEe
Confidence            88866  455555 45678999998654433333344456778999998666766653  3667777765 444444433


Q ss_pred             cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC
Q 004270          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      ..-.....|++++++..+.++-...+.|...|+.......... +......++++..+ ...++-...+.|...+..++.
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            2245789999999766355555667889999987654333322 22233456677655 344444456677777654432


Q ss_pred             CCceeeEeccCCCCCCeeEEEe-cCCCEEE--EEeC----CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFY-ANGRHIL--SAGQ----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~--s~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      .    ...+......+..+++. +..+--.  -+..    =..+.+-..........-..+        .......    
T Consensus       246 ~----~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g--------~~l~~d~----  309 (619)
T 3s94_A          246 G----LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG--------VKLLENG----  309 (619)
T ss_dssp             C----CEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTT--------CCBCTTS----
T ss_pred             c----cEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCch--------heecccC----
Confidence            1    12222222233444432 1100000  0000    001111110000000000000        0000000    


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEEC
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNL  453 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~  453 (764)
                       ..+..      ..-..++..  ....++..++.........+  ....-..+.++++++.++.++... ..+.|+.+++
T Consensus       310 -~~C~~------~~~~~Ll~~--~~~~i~~i~l~~~~~~~~~~--~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~  378 (619)
T 3s94_A          310 -KTCKD------GATELLLLA--RRTDLRRISLDTPDFTDIVL--QLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI  378 (619)
T ss_dssp             -SCBCS------SCSEEEEEE--ESSCEEEEESSSTTCCCEEC--CCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -cccCC------CCceEEEEE--cccceEEEecCCCccceeEE--eccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEc
Confidence             00000      000112222  12344444544332211111  111235678899998766666554 5778999998


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLA  531 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la  531 (764)
                      ..........        ..-....+++++..++ +.++-+..+.|.+.++............ .....+++.|....|.
T Consensus       379 ~g~~~~~v~~--------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          379 DGSGSQFVVT--------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             TSCSCEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             CCCccEEEEE--------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence            7643322221        2234567899997554 5555556789999998865433333222 6788999999766666


Q ss_pred             EEeC--CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEee-C-CceEEEEE
Q 004270          532 TVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHV-D-VSITALSL  606 (764)
Q Consensus       532 ~~~~--d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~-~~v~~l~~  606 (764)
                      ....  .+.|...+++...........-...+.|+++++++.|..+. ..+.|...++.. .....+.. . ....+++.
T Consensus       451 ~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glav  529 (619)
T 3s94_A          451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG-TGRRVLVEDKIPHIFGFTL  529 (619)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEEECCCCSSCCEEE
T ss_pred             EecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC-CceEEEeccCCCCcEEEEE
Confidence            6543  36777777764433222333445678999998776666654 457788888753 33333321 1 12345555


Q ss_pred             cCCCCeEEEEEeCCCeEEEE
Q 004270          607 SPNMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       607 sp~g~~lat~~~d~~~i~lW  626 (764)
                      .  +.+|..+......|+.-
T Consensus       530 ~--~~~ly~tD~~~~~I~~~  547 (619)
T 3s94_A          530 L--GDYVYWTDWQRRSIERV  547 (619)
T ss_dssp             E--TTEEEEECTTSSCEEEE
T ss_pred             E--CCEEEEeecCCCeEEEE
Confidence            3  33666655444334433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.07  E-value=4.7e-05  Score=83.12  Aligned_cols=471  Identities=10%  Similarity=-0.016  Sum_probs=251.1

Q ss_pred             EEEEEeCCeEEEEecCCCe--EEEecCCCCcceEEEEEeCC--eEEEEE--CCeEEEEecCce---EEEecccccceEEE
Q 004270           29 FVTVSVGKAFHIYNCAKLN--LVLVGPQLPKKIRALASYRD--YTFAAY--GNHIAVVKRAHQ---VATWSRHSAKVNLL   99 (764)
Q Consensus        29 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~I~~~~~~~~--~~~~a~--g~~i~vw~~~~~---~~~~~~h~~~v~~l   99 (764)
                      ++.....+.|+..|+....  ...... .-+...+|++++.  .+|.+-  .+.|..++....   ...+...-.....+
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl   89 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   89 (619)
T ss_dssp             CEEEECSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence            4445567889999988653  222222 2445789999974  455554  344888876432   22233333467788


Q ss_pred             EEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC--CCcEEEEeCCCCeEE
Q 004270          100 LLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ--EGSLQLWNISTKKKL  174 (764)
Q Consensus       100 ~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~--dg~i~iwd~~~~~~~  174 (764)
                      ++|  +..|+.++. .+.|.+.++++....    ..+...-.....+++.|.+  ..|+....  .+.|...++......
T Consensus        90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~----~l~~~~l~~P~~Iavdp~~--g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK----VLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCE----EEECSSCSCCCCEEEETTT--TEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             EEEecCCEEEEEeCCCCEEEEEECCCCCEE----EEEeCCCCCCceEEEecCC--CeEEEeccCCCCEEEEEECCCCceE
Confidence            875  566666654 577999998765431    1111233445677888876  56776653  356666676533333


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270          175 YEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (764)
Q Consensus       175 ~~~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd  253 (764)
                      ......-.....+++++++..|..+.. .+.|...|+.... ...+..........+++..+ . +.++-...+.|...|
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~-ly~td~~~~~V~~~d  240 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-I-LYWTDWSTHSILACN  240 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSS-E-EEEECTTTCSEEEEE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-E-EEEecCCCCEEEEEE
Confidence            333333456789999998777776654 4778888886433 22222211222346676554 3 566656778899999


Q ss_pred             CCCceeeeeeecc----------cc--------------cCeeEEEEe-----------cCC---------------CEE
Q 004270          254 LEKRRLQSVIREA----------HD--------------NAIISLHFF-----------ANE---------------PVL  283 (764)
Q Consensus       254 ~~~~~~~~~~~~~----------h~--------------~~v~~l~~~-----------~~~---------------~~l  283 (764)
                      ..+++....+...          |.              +....+++.           |.|               .+|
T Consensus       241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L  320 (619)
T 3s94_A          241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL  320 (619)
T ss_dssp             SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred             CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence            8777543332210          10              011112221           111               122


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      +.+. .+.|+..+++......  +......-..+..++|.+.+..|+.+. ..+.|..+++.......            
T Consensus       321 l~~~-~~~i~~i~l~~~~~~~--~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------  385 (619)
T 3s94_A          321 LLAR-RTDLRRISLDTPDFTD--IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF------------  385 (619)
T ss_dssp             EEEE-SSCEEEEESSSTTCCC--EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------
T ss_pred             EEEc-ccceEEEecCCCccce--eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE------------
Confidence            2222 2345555554432211  111111223456778887444444443 45556555543211000            


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE-EE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VL  441 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~  441 (764)
                                                                           ...   .....+..+++...++.| ++
T Consensus       386 -----------------------------------------------------v~~---~~~~~p~GlAvD~~~~~lY~t  409 (619)
T 3s94_A          386 -----------------------------------------------------VVT---AQIAHPDGIAVDWVARNLYWT  409 (619)
T ss_dssp             -----------------------------------------------------EEC---SSCSCCCEEEEETTTTEEEEE
T ss_pred             -----------------------------------------------------EEE---CCCCCcCceEEecccCcEEEE
Confidence                                                                 000   011345678888755544 44


Q ss_pred             EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCeeeeEecC-cce
Q 004270          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVG-CSL  518 (764)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~-~~i  518 (764)
                      -+..+.|.+.++..... ..+.       ...-....+|+++|....|..+..  .+.|...+++........... ...
T Consensus       410 D~~~~~I~v~~~~G~~~-~~l~-------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P  481 (619)
T 3s94_A          410 DTGTDRIEVTRLNGTMR-KILI-------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWP  481 (619)
T ss_dssp             ETTTTEEEEEETTSCSC-EEEE-------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             eCCCCcEEEEeCCCCeE-EEEE-------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCC
Confidence            45567899999875533 2322       123456789999997545544432  367777777654433333322 567


Q ss_pred             EEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE-eCCCcEEEEEcCccc
Q 004270          519 VKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILAR  590 (764)
Q Consensus       519 ~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~  590 (764)
                      ..+++.++++.|..+. ..+.|..+++........+.+.-.....|+...+  +|..+ ...+.|..-|..+|.
T Consensus       482 ~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          482 NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             eeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence            8999998777776665 4578999998654332222332233445666533  44444 345667777777763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.05  E-value=1.2e-07  Score=103.10  Aligned_cols=170  Identities=15%  Similarity=0.161  Sum_probs=111.6

Q ss_pred             CcEEEEECcCCcccceecCccccc--cccccCcEEEEEEC-CCCC---EEEEEeCCCeEEEEECCCCCeeeeEecCcce-
Q 004270          446 GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSL-  518 (764)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i-  518 (764)
                      +.|..+|..+|+.+-.+.......  .......+. +... .+|+   .++.++.+|.++++|..+++.+........+ 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            578999999999887765211000  000112222 2222 4664   7888999999999999999988766543200 


Q ss_pred             ---------------------------------------------EEEEEeecCCEEEEEe-------------------
Q 004270          519 ---------------------------------------------VKIVYHRVNGLLATVA-------------------  534 (764)
Q Consensus       519 ---------------------------------------------~~~~~s~~~~~la~~~-------------------  534 (764)
                                                                   ..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                                                         1345666655555433                   


Q ss_pred             --------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270          535 --------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS  600 (764)
Q Consensus       535 --------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  600 (764)
                                    .+|.|.-||+.+++.+-+...+. ++..-.....+..++.++.|+.++.||..+|+.+..++....
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence                          25789999999999887776432 222212222456788899999999999999999999998776


Q ss_pred             eEE--EEEcCCCCe-EEEEE
Q 004270          601 ITA--LSLSPNMDV-LATAH  617 (764)
Q Consensus       601 v~~--l~~sp~g~~-lat~~  617 (764)
                      +.+  +.+..+|+. +++.+
T Consensus       529 ~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          529 IVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CCSCCEEEEETTEEEEEEEE
T ss_pred             cccCceEEEECCEEEEEEEc
Confidence            443  677778874 44443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=99.03  E-value=0.00013  Score=85.23  Aligned_cols=557  Identities=8%  Similarity=0.042  Sum_probs=282.8

Q ss_pred             CeEEEEEEeCCeEEEEecC--CCeEEEecCCCCcceEEEEEe--CCeEEE-EECCeEEEEecC--ceEEEecc-cccceE
Q 004270           26 TENFVTVSVGKAFHIYNCA--KLNLVLVGPQLPKKIRALASY--RDYTFA-AYGNHIAVVKRA--HQVATWSR-HSAKVN   97 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~~~~I~~~~~~--~~~~~~-a~g~~i~vw~~~--~~~~~~~~-h~~~v~   97 (764)
                      +.+++.+-.+.| .|+.+.  +.+.+ ...+.......++..  +++.++ .+...|++.+..  ..+..+.. ....|.
T Consensus       440 ~~yLvlS~~~~T-~Vl~i~~e~veev-~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~  517 (1158)
T 3ei3_A          440 DDTLVLSFVGQT-RVLMLNGEEVEET-ELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNIS  517 (1158)
T ss_dssp             CCEEEEEETTEE-EEEEEETTEEEEE-CCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCC
T ss_pred             CCEEEEECCCCe-EEEEEeCCccccc-ccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEE
Confidence            446666555555 344432  22222 122332222233222  333333 456668888763  35666654 345788


Q ss_pred             EEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC----CCCEEEEEeC-CCcEEEEeCCCCe
Q 004270           98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT----YLNKVIVGSQ-EGSLQLWNISTKK  172 (764)
Q Consensus        98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~l~~~~~-dg~i~iwd~~~~~  172 (764)
                      ..+.++.+++.++ .+.+.+++++.+++..  +....... .+.++.+.|..    ..+.+++|.. |++++|+++.+.+
T Consensus       518 ~As~n~~~vvva~-g~~l~~fel~~~~L~~--~~~~~l~~-evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          518 VASCNSSQVVVAV-GRALYYLQIHPQELRQ--ISHTEMEH-EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             EEEECSSEEEEEE-TTEEEEEEEETTEEEE--EEEEECSS-CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeCCCEEEEEE-CCEEEEEEeeCCceee--ecccCCCC-ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            8888888888875 6788888888654321  23333332 34444455432    1268999996 9999999999887


Q ss_pred             EEEEEcCC-CCCeEEEEEc--CCCCEEEEEEcCCeEEEEEcc--CCceEEE--EeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          173 KLYEFKGW-GSSISSCVSS--PALDVVAVGCSDGKIHVHNVR--YDEELVT--FTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       173 ~~~~~~~h-~~~i~~~~~s--p~~~~la~g~~dg~i~iwd~~--~~~~~~~--~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      .+....-. .....++.+.  ....+|.+|..||.+.-+.+.  +|+....  ...+ ..++.-..|...|..-+++.+ 
T Consensus       594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-  671 (1158)
T 3ei3_A          594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-  671 (1158)
T ss_dssp             EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-
T ss_pred             eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-
Confidence            77554321 1233444332  234688999999998766654  4443322  2223 345555555544442333333 


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeE-EEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIIS-LHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~-l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      +.-..++.-+ ++....-  -....+.. ..|+..  ..-++..+ ++.+++..++....  ...+.. .-...+..+++
T Consensus       672 ~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--~~~~~i-pL~~Tprri~y  744 (1158)
T 3ei3_A          672 DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--LHIRTV-PLYESPRKICY  744 (1158)
T ss_dssp             SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--EEEEEE-ECSSEEEEEEE
T ss_pred             CCCEEEEEcC-CceEEec--cChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--eeEEEE-eCCCCceEEEE
Confidence            3444444432 3322221  12223333 334332  12344444 46699998865421  222222 23467899999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      +|+.+.++.+..+.  ..++.... ...+ .. ........ ............     .......    +-.......+
T Consensus       745 ~~~~~~~~v~~~~~--~~~~~~~~-~~~~-~~-~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~----~g~~~~~s~i  809 (1158)
T 3ei3_A          745 QEVSQCFGVLSSRI--EVQDTSGG-TTAL-RP-SASTQALS-SSVSSSKLFSSS-----TAPHETS----FGEEVEVHNL  809 (1158)
T ss_dssp             EGGGTEEEEEEEEE--EEECSSSS-EEES-SC-CHHHHCSE-EEECCCCCC-------------------CCCEEEEEEE
T ss_pred             cCCCCEEEEEEEec--cccccccc-cchh-hh-hhhhhhhh-hccccccccccc-----ccCchhh----cCCceeeEEE
Confidence            99887766655332  11221100 0000 00 00000000 000000000000     0000000    0000012344


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEE---Ecc-CCCEEEEEe----------cCCcEEEEECcCCcccceecCcccc
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACT---ISA-CGNFAVLGT----------AGGWIERFNLQSGISRGSYLDMSER  468 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~-~g~~l~~g~----------~~g~i~i~~~~~~~~~~~~~~~~~~  468 (764)
                      ++.|..+...- ..+..  .....+.+++   +.. ...++++|+          ..|.|.+|++..++......     
T Consensus       810 ~lidp~t~~~i-~~~~l--~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-----  881 (1158)
T 3ei3_A          810 LIIDQHTFEVL-HAHQF--LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-----  881 (1158)
T ss_dssp             EEEETTTCCEE-EEEEC--CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-----
T ss_pred             EEEeCCCCeEE-EEEeC--CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-----
Confidence            45554433221 11111  0112333333   332 247899987          35899999997443332222     


Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee-eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc--c
Q 004270          469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--V  545 (764)
Q Consensus       469 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~--~  545 (764)
                        ....+.|++++-- +|+ |+++- ..+|++|++...+.+. .......+..+.....++++++|..-..|.++..  .
T Consensus       882 --~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~  956 (1158)
T 3ei3_A          882 --KEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM  956 (1158)
T ss_dssp             --EEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred             --EEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence              2456788888754 344 44333 4789999998766444 1222223444455556889999988777777544  4


Q ss_pred             CCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc--------cce--EEEEeeCCceEEEE---EcCCC-
Q 004270          546 ALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL--------ARQ--IDAIHVDVSITALS---LSPNM-  610 (764)
Q Consensus       546 ~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~--------~~~--~~~~~~~~~v~~l~---~sp~g-  610 (764)
                      ..++...-+ -+...++++.|-.++ .++.+..+|.+.+...+.        .++  ...|.....|+++.   +.+.+ 
T Consensus       957 ~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~ 1035 (1158)
T 3ei3_A          957 EGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1035 (1158)
T ss_dssp             TTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC--
T ss_pred             CCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCC
Confidence            444433222 245678888887665 566689999999997654        122  23455566688876   33332 


Q ss_pred             --------CeEEEEEeCCCeEEEEe
Q 004270          611 --------DVLATAHVDQNGVYLWV  627 (764)
Q Consensus       611 --------~~lat~~~d~~~i~lW~  627 (764)
                              ..++.++.+| +|.+.-
T Consensus      1036 ~~~~~~~~~~il~~T~~G-sIg~l~ 1059 (1158)
T 3ei3_A         1036 GETSTPTQGSVLFGTVNG-MIGLVT 1059 (1158)
T ss_dssp             -----CEEEEEEEEETTS-CEEEEE
T ss_pred             ccccccccceEEEEecCC-EEEEEE
Confidence                    3466677777 466543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.01  E-value=3.8e-08  Score=106.80  Aligned_cols=341  Identities=11%  Similarity=0.038  Sum_probs=187.2

Q ss_pred             EEEEEeC-CCcEEEEEC-CCceeeeeeecccccC----------eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270          239 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       239 ~l~sg~~-dg~i~iwd~-~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (764)
                      .++.++. ++.|.-+|. .+|+.+..........          -..+..  .+..++.++.|+.+..+|..++...++ 
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~-  140 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE-  140 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE-
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE-
Confidence            4666666 789999999 8998887765221110          012233  345778888899888887766532211 


Q ss_pred             eEeccCCC--CCCeeEEEecCCCEEEEEeC------CCcEEEEEeecccccccccchhhhHHHh-hccchhhhhccCcee
Q 004270          307 LRFRSGHS--APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRAR-KLKMKEEELKLKPVI  377 (764)
Q Consensus       307 ~~~~~~h~--~~v~~i~~~~~~~~l~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  377 (764)
                       .....+.  ..+.+--...++ .++.++.      ++.|..+|..+++..-.+.......... .......    .++.
T Consensus       141 -~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~----~~~~  214 (571)
T 2ad6_A          141 -VEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA----NPHY  214 (571)
T ss_dssp             -EECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT----CGGG
T ss_pred             -ecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc----cccc
Confidence             1111111  112111011144 4555544      7899999998887765543321110000 0000000    0000


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC------------
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG------------  445 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~------------  445 (764)
                      .-  .......|..-.                       ...  .....-..+++.+....+++++.+            
T Consensus       215 G~--~~~g~~~w~~~~-----------------------~~~--gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          215 GQ--FGLGTKTWEGDA-----------------------WKI--GGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             CC--SSHHHHTSSTTG-----------------------GGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             cc--cccccccCcccc-----------------------eec--CCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence            00  000000000000                       000  000111234556666666666542            


Q ss_pred             ----CcEEEEECcCCcccceecCccccc--cccccCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270          446 ----GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (764)
Q Consensus       446 ----g~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  516 (764)
                          +.|..+|..+|+.+-.+.......  .......+. +....+|+   .++.++.+|.+.++|..+++.+...+...
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~  346 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP  346 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence                358999999998887765211000  001112221 22224663   57788899999999999999887765432


Q ss_pred             --------------ce--------------------------EEEEEeecCCEEEEEe----------------------
Q 004270          517 --------------SL--------------------------VKIVYHRVNGLLATVA----------------------  534 (764)
Q Consensus       517 --------------~i--------------------------~~~~~s~~~~~la~~~----------------------  534 (764)
                                    ++                          ..++++|+..++++..                      
T Consensus       347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  426 (571)
T 2ad6_A          347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG  426 (571)
T ss_dssp             TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence                          11                          2467888888777764                      


Q ss_pred             ---------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          535 ---------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       535 ---------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                                     .++.|..||..+++.+.++.... .+....+...+..++.++.|+.|+.||..+|+.+..++...
T Consensus       427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence                           34789999999999888876432 23333333345677779999999999999999999998765


Q ss_pred             ceE--EEEEcCCCCeEEEEE
Q 004270          600 SIT--ALSLSPNMDVLATAH  617 (764)
Q Consensus       600 ~v~--~l~~sp~g~~lat~~  617 (764)
                      .+.  .+.+..+|+.++...
T Consensus       506 ~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          506 GGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CCCSCCEEEEETTEEEEEEE
T ss_pred             CcEeeeEEEEECCEEEEEEE
Confidence            532  234556776555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=4.6e-07  Score=100.57  Aligned_cols=266  Identities=10%  Similarity=0.049  Sum_probs=175.0

Q ss_pred             CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc----------c-eEEEEEeCCeEEEEE-CCeEEEEec--CceEEEecc
Q 004270           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK----------K-IRALASYRDYTFAAY-GNHIAVVKR--AHQVATWSR   91 (764)
Q Consensus        26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~-I~~~~~~~~~~~~a~-g~~i~vw~~--~~~~~~~~~   91 (764)
                      ++.+.+++.++.+.-+|..+++.+........          . -..+++..+.+|+.+ .+.|+.+|.  ++.+-+...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            45566667788999999999999887632211          1 134566777888877 445999984  566555332


Q ss_pred             cc----cceE-EEEEeCCEEEEEec------CCcEEEEEccCCcccccceeeEecC------------------------
Q 004270           92 HS----AKVN-LLLLFGEHILSIDI------DGNMFIWAFKGIEENLAPVGHVKLD------------------------  136 (764)
Q Consensus        92 h~----~~v~-~l~~~g~~l~s~~~------dg~v~vWd~~~~~~~~~~~~~~~~~------------------------  136 (764)
                      ..    ..+. .-...+..++.+..      +|.|..+|..+++...    .+...                        
T Consensus       146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W----~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW----RFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE----EEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE----EecccCCCCCccccccccccccccCCccc
Confidence            11    1111 11224556666543      5889999999998733    22210                        


Q ss_pred             -------CccccEEEEeCCCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEEcC--CC-------
Q 004270          137 -------DKFTPTCIMHPDTYLNKVIVGSQEGS-------------------LQLWNISTKKKLYEFKG--WG-------  181 (764)
Q Consensus       137 -------~~~~~~~~~~p~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------  181 (764)
                             .......++.|..  +.+++++.++.                   |..+|.++|+.+..++.  |.       
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                   0111235677777  78888887763                   99999999999998864  22       


Q ss_pred             CCeEEEEEcCCCC---EEEEEEcCCeEEEEEccCCceEEEEeccCC-----------CCE--------------------
Q 004270          182 SSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDEELVTFTHSMR-----------GAV--------------------  227 (764)
Q Consensus       182 ~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v--------------------  227 (764)
                      .+.....+..+|+   .+++++.+|.+.++|..+|+.+........           .++                    
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G  379 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence            3333334444665   688999999999999999998865543210           001                    


Q ss_pred             ----EEEEEeeCCCCEEEEE------------------------------------eCCCcEEEEECCCceeeeeeeccc
Q 004270          228 ----TALAFSSDGQPLLASG------------------------------------ASSGVISIWNLEKRRLQSVIREAH  267 (764)
Q Consensus       228 ----~~l~fs~d~~~~l~sg------------------------------------~~dg~i~iwd~~~~~~~~~~~~~h  267 (764)
                          ..++++|+.. +++..                                    ..+|.|..||+.+++.+....  +
T Consensus       380 ~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~  456 (668)
T 1kv9_A          380 AHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--Y  456 (668)
T ss_dssp             SSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--E
T ss_pred             ccCCCcceECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc--C
Confidence                1267777766 44431                                    123789999999999988876  3


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                      ........+...+.+++.++.|+.++.||.++.
T Consensus       457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG  489 (668)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             CCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence            334444455557778999999999999988766

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.99  E-value=1.1e-06  Score=95.04  Aligned_cols=376  Identities=9%  Similarity=0.029  Sum_probs=205.1

Q ss_pred             CEEEEEeC-CCcEEEEeC-CCCeEEEEEcCCCCC-----------eEEEEEcCCCCE----EEEEEcCCeEEEEEccCCc
Q 004270          152 NKVIVGSQ-EGSLQLWNI-STKKKLYEFKGWGSS-----------ISSCVSSPALDV----VAVGCSDGKIHVHNVRYDE  214 (764)
Q Consensus       152 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------i~~~~~sp~~~~----la~g~~dg~i~iwd~~~~~  214 (764)
                      ..|++++. ++.|.-+|. .+|+.+.++......           ...++++|.+..    |++++.|+.+.-+|.++|+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            47888888 899999999 999999988653221           123456554444    8888999999999999999


Q ss_pred             eEEEEeccCC---CCEEEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccccc----------------
Q 004270          215 ELVTFTHSMR---GAVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAHDN----------------  269 (764)
Q Consensus       215 ~~~~~~~~~~---~~v~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h~~----------------  269 (764)
                      .+.+......   ..+.+--...++.  +++++      .+|.|+.+|.++|+.+.........                
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~~g~--V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVVKDK--VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTE--EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEeecCCCCCccceeecCCEEECCE--EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            9988764311   0122111112453  45554      3799999999999988776622111                


Q ss_pred             --------------------Ce-eEEEEecCCCEEEEEcCCC----------------cEEEEEecCCCCCceeeEeccC
Q 004270          270 --------------------AI-ISLHFFANEPVLMSASADN----------------SIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       270 --------------------~v-~~l~~~~~~~~l~s~~~d~----------------~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                                          .+ ..+++.++..+++.+..++                +|..+|.++..  .+-......
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~  298 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTP  298 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESST
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCC
Confidence                                00 1345666777777776553                56666665542  222222222


Q ss_pred             CCC-------CCeeEEEe-cCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          313 HSA-------PPLCIRFY-ANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       313 h~~-------~v~~i~~~-~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                      |..       .+.-+... .+|   ..++.++.+|.+.++|..+++............-...+..    ..-.|+..-..
T Consensus       299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~----~~g~p~~~~~~  374 (599)
T 1w6s_A          299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL----KTGQPVRDPEY  374 (599)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT----TTCCEEECGGG
T ss_pred             CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc----CCCceeecccc
Confidence            321       11222222 467   4677788999999999988876554321100000000000    00000000000


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                      ..                        .. ........+.......-..++++|+..++++...+................
T Consensus       375 ~~------------------------~~-~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~  429 (599)
T 1w6s_A          375 GT------------------------RM-DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQ  429 (599)
T ss_dssp             CC------------------------CT-TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred             CC------------------------CC-CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCc
Confidence            00                        00 000000011111112233678999999998887764433322111000000


Q ss_pred             ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEE
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  541 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v  541 (764)
                                ..-+.-..+..+|.+. -.....+|.|..||+.+++.+.......+...-.+...+.++++++.|+.++.
T Consensus       430 ----------~~~g~~~~~~~~p~~~-~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A  498 (599)
T 1w6s_A          430 ----------FFVGATLNMYPGPKGD-RQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA  498 (599)
T ss_dssp             ----------CCCCEEEEEEECTTSB-TTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ----------ceecccceeccCCcCC-cccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence                      0000000111122110 00000358899999999999888876544433334556888888999999999


Q ss_pred             EEccCCeEEEEeecCCCCe-eEEEEcCCCcE
Q 004270          542 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKW  571 (764)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~~  571 (764)
                      ||.++++.+.+++-..+.+ .-+.+..+|+.
T Consensus       499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            9999999999887543222 23555667763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=5.3e-08  Score=91.20  Aligned_cols=182  Identities=12%  Similarity=0.084  Sum_probs=135.4

Q ss_pred             CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCCeEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVW  501 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iw  501 (764)
                      .....+.++ ++.+..+.+.+|  .|+.+|+.+++.......       .....-.++++.  ++.|. ..-.++.+.+|
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~--g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDW--KDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence            445788888 665556666665  999999999999887752       111122334544  44444 44468999999


Q ss_pred             ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC--C---CCeeEEEEcCCCcEEEEEe
Q 004270          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--T---DRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h--~---~~i~~l~~s~dg~~l~s~s  576 (764)
                      |..+.+.+.++.....  ...+++|++.|+.+..++.|+++|..+.+.+.++.-.  .   ..++.+.|. +|+..+..-
T Consensus       113 D~~t~~~~~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          113 NIRNLRQVRSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             ETTTCCEEEEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ECccCcEEEEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            9999999999987643  3445577888888777889999999999988886642  1   335567887 787666666


Q ss_pred             CCCcEEEEEcCccceEEEEeeC-------------CceEEEEEcCCCCeEEEEEeC
Q 004270          577 MDGSLRIWDVILARQIDAIHVD-------------VSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~~~~-------------~~v~~l~~sp~g~~lat~~~d  619 (764)
                      .+..|.+.|..+|+.+..+...             ...+.+||+|+++.|.+++..
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            7889999999999999998763             136899999999888888754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=1.9e-08  Score=105.51  Aligned_cols=223  Identities=9%  Similarity=0.056  Sum_probs=157.1

Q ss_pred             EeCCEEEEEecCC-cEEEEEccCCcccccceeeEecCC-ccccEEEE-e-CCCCCCEEEEEe------------------
Q 004270          101 LFGEHILSIDIDG-NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIM-H-PDTYLNKVIVGS------------------  158 (764)
Q Consensus       101 ~~g~~l~s~~~dg-~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-p~~~~~~l~~~~------------------  158 (764)
                      +||++|+....++ .|.+-|+.+.+.    ...++... .....+++ + |++  +++++++                  
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g~~phg~~~~~~p~~--~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNAKGIHGLRPQKWPRS--NYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSCCSEEEEEECCSSBC--SEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCCCCCcceeeeecCCC--cEEEEecccccccCCCCcccccccc
Confidence            3899999988755 499999999887    45444433 22334444 5 888  7888885                  


Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----------------------------------
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG-----------------------------------  203 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg-----------------------------------  203 (764)
                      .++.+.++|..+.+.+.++.--. .-..++++|+|+++++.+.+.                                   
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             cCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            34679999999999999887423 456788999999999988553                                   


Q ss_pred             ---eEEEEEccC--Cce-EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce------------eeeeeec
Q 004270          204 ---KIHVHNVRY--DEE-LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------------LQSVIRE  265 (764)
Q Consensus       204 ---~i~iwd~~~--~~~-~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~------------~~~~~~~  265 (764)
                         .|.+.|.++  ++. +..+..+  ....++.++|||+++++++..+.+|.++|+.+.+            ....+. 
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-  328 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-  328 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred             EECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence               366667666  444 4555443  4567899999999777777788999999998653            233332 


Q ss_pred             ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC------CCCceeeEeccCCCCC-----CeeEEEecCCCEEEEEeC
Q 004270          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAP-----PLCIRFYANGRHILSAGQ  334 (764)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~------~~~~~~~~~~~~h~~~-----v~~i~~~~~~~~l~s~~~  334 (764)
                       -......++|+|+|...++.-.|++|.+|+++..      +.....+..+..|..+     -..+..+|||++|+++..
T Consensus       329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence             3456889999999954556667999999999862      1122455555555432     233456789999998753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.98  E-value=5.3e-07  Score=87.96  Aligned_cols=250  Identities=13%  Similarity=0.015  Sum_probs=153.7

Q ss_pred             CEEEEEEcCCeEEEEEccCCce-----EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEE-----LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD  268 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~  268 (764)
                      .+|..+.. +.|+.+++.....     ...+... ...+..++|++++..++++-..++.|..+++..+.....+. ...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCC
Confidence            45555554 5788888875432     1112221 24578999999766466666677899999997665433332 223


Q ss_pred             cCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEee
Q 004270          269 NAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVI  344 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~  344 (764)
                      .....+++.+++..|+ +-...+.|.+++++...  .+.+  .......+..++++|++..|+.+...   +.|..+++.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            5678999999765554 44556788888776432  1222  11222467899999976666555432   456555542


Q ss_pred             cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (764)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (764)
                      ... ...                                                                 +..  ...
T Consensus       155 g~~-~~~-----------------------------------------------------------------~~~--~~~  166 (267)
T 1npe_A          155 GTN-RRI-----------------------------------------------------------------LAQ--DNL  166 (267)
T ss_dssp             SCC-CEE-----------------------------------------------------------------EEC--TTC
T ss_pred             CCC-cEE-----------------------------------------------------------------EEE--CCC
Confidence            110 000                                                                 000  011


Q ss_pred             CCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          425 TAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      .....++++++++.|+++.. .+.|.+++...........         ......+++++ .+.++++....+.|..+|.
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---------~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---------CCCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---------CCCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence            45788999998877766654 5799999997644332221         12234567765 3444455546689999999


Q ss_pred             CCCCeeeeEecCc--ceEEEEEeecCC
Q 004270          504 KGRDLKSRWEVGC--SLVKIVYHRVNG  528 (764)
Q Consensus       504 ~~~~~~~~~~~~~--~i~~~~~s~~~~  528 (764)
                      .+++.+..+....  ....+++.|++.
T Consensus       237 ~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          237 AISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCceEEEccccccccceeeecCccC
Confidence            9999888886553  467788887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.97  E-value=2.4e-07  Score=100.36  Aligned_cols=344  Identities=10%  Similarity=0.034  Sum_probs=188.0

Q ss_pred             EEEEEeC-CCcEEEEEC-CCceeeeeeeccccc----------CeeEEEEecCCCE----EEEEcCCCcEEEEEecCCCC
Q 004270          239 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDN----------AIISLHFFANEPV----LMSASADNSIKMWIFDTTDG  302 (764)
Q Consensus       239 ~l~sg~~-dg~i~iwd~-~~~~~~~~~~~~h~~----------~v~~l~~~~~~~~----l~s~~~d~~i~vw~~~~~~~  302 (764)
                      .+++++. ++.|.-+|. .+|+.+.........          ....+++.|.+..    ++.++.|+.+..+|..++..
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4666676 789999999 899888776522111          0123455444434    78888899888887665532


Q ss_pred             CceeeEeccCCC--CCCeeEEEecCCCEEEEEe------CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270          303 DPRLLRFRSGHS--APPLCIRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (764)
Q Consensus       303 ~~~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (764)
                      .++  .....+.  ..+.+--...++ .++.++      .++.|+.+|..+++..-.+.......... +.  ...-...
T Consensus       144 ~W~--~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~-~~--p~~~~~~  217 (599)
T 1w6s_A          144 VWK--VENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL-LA--SDFNIKN  217 (599)
T ss_dssp             EEE--EECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT-BC--TTTTTTC
T ss_pred             EEe--ecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc-cc--ccccccc
Confidence            111  1111110  111111011144 455444      37899999998887665543321110000 00  0000000


Q ss_pred             ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--------
Q 004270          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--------  446 (764)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g--------  446 (764)
                      |...-  .......|..                       .....  +....-...++.+....+++++.++        
T Consensus       218 ~~~g~--~~~g~~tw~g-----------------------~~~~~--gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r  270 (599)
T 1w6s_A          218 PHYGQ--KGLGTGTWEG-----------------------DAWKI--GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (599)
T ss_dssp             GGGCC--TTHHHHTSST-----------------------TGGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             ccccc--cccccccCCC-----------------------cceec--CCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence            00000  0000000000                       00000  0001112346667778888887653        


Q ss_pred             --------cEEEEECcCCcccceecCccccc--cccccCcEEEEEEC-CCC---CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270          447 --------WIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STN---TLMISAGYHGDIKVWDFKGRDLKSRW  512 (764)
Q Consensus       447 --------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~  512 (764)
                              .|..+|..+|+.+-.+.......  .......+. +... .+|   +.++.++.+|.+.++|..+++.+...
T Consensus       271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence                    79999999999887775311000  000111222 2222 467   46777889999999999999988766


Q ss_pred             ecCc--------------ce--------------------------EEEEEeecCCEEEEEe------------------
Q 004270          513 EVGC--------------SL--------------------------VKIVYHRVNGLLATVA------------------  534 (764)
Q Consensus       513 ~~~~--------------~i--------------------------~~~~~s~~~~~la~~~------------------  534 (764)
                      ....              ++                          ..++++|+.+++++..                  
T Consensus       350 ~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~  429 (599)
T 1w6s_A          350 KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQ  429 (599)
T ss_dssp             ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCc
Confidence            5321              11                          2356777666655431                  


Q ss_pred             ---------------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270          535 ---------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID  593 (764)
Q Consensus       535 ---------------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  593 (764)
                                           ..|.+.-||+.+++.+-+.... .+...-.+...+..++.++.|+.++.||..+|+.+.
T Consensus       430 ~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          430 FFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             CCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence                                 3478999999999988776522 122211122356677789999999999999999999


Q ss_pred             EEeeCCce--EEEEEcCCCCe-EEEEE
Q 004270          594 AIHVDVSI--TALSLSPNMDV-LATAH  617 (764)
Q Consensus       594 ~~~~~~~v--~~l~~sp~g~~-lat~~  617 (764)
                      .++....+  .-+.+..+|+. +++..
T Consensus       509 ~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          509 KFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            99876642  33556677764 44443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=1e-06  Score=85.93  Aligned_cols=241  Identities=13%  Similarity=0.071  Sum_probs=149.5

Q ss_pred             CcEEEEECCCceee-----eeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          247 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       247 g~i~iwd~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      +.|+.+++......     ..+. .....+..++|.+++..|+ +-...+.|..++.+...    ...........+..+
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~p~~i   84 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEE
T ss_pred             CeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEECCCCCccEE
Confidence            47888888765421     1122 2234578999999765555 44456788888876442    112222223567899


Q ss_pred             EEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          321 RFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       321 ~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      ++++++..++.+ ...+.|.++++..... ..+                                               
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~-----------------------------------------------  116 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL-----------------------------------------------  116 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-----------------------------------------------
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCE-EEE-----------------------------------------------
Confidence            999976555554 4556777777532110 000                                               


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCc
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (764)
                                       ..   ........++++|++..++++..   .+.|..+++.... ...+.       ......
T Consensus       117 -----------------~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------~~~~~~  168 (267)
T 1npe_A          117 -----------------FD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------QDNLGL  168 (267)
T ss_dssp             -----------------EC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------CTTCSC
T ss_pred             -----------------EE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------ECCCCC
Confidence                             00   01145688999997777666654   3688888876432 22221       122346


Q ss_pred             EEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEee
Q 004270          477 VVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~  554 (764)
                      ..++++++++..|..+ ...+.|.++|..................++.  ++..|.++. .++.|.++|..+++.+..+.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            7899999987666544 4668999999986554444443344456654  455555554 56899999999999988886


Q ss_pred             cCC-CCeeEEEEcCCCc
Q 004270          555 GHT-DRITDFCFSEDGK  570 (764)
Q Consensus       555 ~h~-~~i~~l~~s~dg~  570 (764)
                      ... .....+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            443 3477888888865

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.92  E-value=0.00024  Score=80.72  Aligned_cols=513  Identities=11%  Similarity=0.029  Sum_probs=269.4

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc-eEEEecc-----cccceEE
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH-QVATWSR-----HSAKVNL   98 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~-~~~~~~~-----h~~~v~~   98 (764)
                      ....+-+++. +-+..||..+.+...........|.++.......++++.+.+..++..+ .+..+..     ....|.+
T Consensus        72 ~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~  150 (758)
T 3ott_A           72 DNTYLYMGTD-NGILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYS  150 (758)
T ss_dssp             TTTEEEEEET-TEEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEE
T ss_pred             CCCcEEEEeC-CCeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEE
Confidence            3445555554 5588999988754332122345688887777788899988899998643 3333311     1346788


Q ss_pred             EEEe-CCEEEEEecCCcEEEEEccCCcccccceeeE-ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270           99 LLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (764)
Q Consensus        99 l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  176 (764)
                      +..+ ...|..++.. -+..++..+........... ......+..+....++  +.|.+|+.. -+..+|..+++....
T Consensus       151 i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~--~~lWigt~~-Gl~~~~~~~~~~~~~  226 (758)
T 3ott_A          151 IIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR--QCVWIGTEG-YLFQYFPSTGQIKQT  226 (758)
T ss_dssp             EEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT--TEEEEEEEE-EEEEEETTTTEEEEE
T ss_pred             EEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCC--CEEEEEECC-CCeEEcCCCCeEEec
Confidence            8775 3445555544 47778876654311000000 0011123333344444  567777754 588899887754332


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      .......|.++....+|.+. +|+. +-+.+++..+++.. .+...       ....|.++....+|.  |-.|+..| +
T Consensus       227 ~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l  300 (758)
T 3ott_A          227 EAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-I  300 (758)
T ss_dssp             EEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-E
T ss_pred             cCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-c
Confidence            11123458888888877654 4554 45788887765432 23211       124688988887776  55666666 5


Q ss_pred             EEEECCCceeeeeee------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC-CceeeEec----cCCCCCCe
Q 004270          250 SIWNLEKRRLQSVIR------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-DPRLLRFR----SGHSAPPL  318 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~-~~~~~~~~----~~h~~~v~  318 (764)
                      .++.. ... .....      ......|.++.-..+|.+-+ |+.+| +..++...... ........    .-....|.
T Consensus       301 ~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  376 (758)
T 3ott_A          301 SLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR  376 (758)
T ss_dssp             EEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEE
T ss_pred             ccccc-CCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceE
Confidence            55433 221 11111      01134578887777776444 44444 44443222110 00111100    01123467


Q ss_pred             eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      ++.-..+|+.- .|+. +-+..++..+++...                                                
T Consensus       377 ~i~~d~~g~lW-igt~-~GL~~~~~~~~~~~~------------------------------------------------  406 (758)
T 3ott_A          377 HIYEDKEQQLW-IATD-GSINRYDYATRQFIH------------------------------------------------  406 (758)
T ss_dssp             EEEECTTSCEE-EEET-TEEEEEETTTTEEEE------------------------------------------------
T ss_pred             EEEECCCCCEE-EEeC-CcHhhcCcCCCcEEE------------------------------------------------
Confidence            77766666544 4454 457778764432110                                                


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC-----ccc---ceecCcccccc
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISR---GSYLDMSERSN  470 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~-----~~~---~~~~~~~~~~~  470 (764)
                            +.....   .     .......|.++...++|+ |.+|+..+-+.+++..+.     ...   ..+..    ..
T Consensus       407 ------~~~~~~---~-----~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~  467 (758)
T 3ott_A          407 ------YNIVDN---T-----GTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV----HN  467 (758)
T ss_dssp             ------EEEECC---C-------CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG----GG
T ss_pred             ------eecCCC---c-----CCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceeccccccc----cc
Confidence                  000000   0     000124577777776665 566777777888886531     100   01100    00


Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      .-....|.++..+++|.+.+.++..+-|..+|..+++.......    ...+.++....+|.+.+ |+.+ -+..||..+
T Consensus       468 ~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~  545 (758)
T 3ott_A          468 GLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKD  545 (758)
T ss_dssp             TCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--
T ss_pred             ccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCC
Confidence            01234699999999998776444445577888877654432111    23567777776676654 4444 478888765


Q ss_pred             CeEEEE-eec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-CCceEEEEEc-CCCCeEEEEEeCCCe
Q 004270          547 LRMVRK-FEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS-PNMDVLATAHVDQNG  622 (764)
Q Consensus       547 ~~~~~~-~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~v~~l~~s-p~g~~lat~~~d~~~  622 (764)
                      ++...- ..+ ....|.++... +|++.++ +..| |..+|..+.+... +.. ...+....+. ++|. |..++.+|  
T Consensus       546 ~~~~~~~~~gl~~~~i~~i~~~-~g~lWi~-t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-l~fG~~~G--  618 (758)
T 3ott_A          546 ESQQSISFGSFSNNEILSMTCV-KNSIWVS-TTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKEDC-VYLGGADG--  618 (758)
T ss_dssp             CCCCBCCCCC---CCEEEEEEE-TTEEEEE-ESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTTE-EEEECBSE--
T ss_pred             CceEEecccCCCccceEEEEEC-CCCEEEE-CCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCCc-EEEecCCc--
Confidence            543210 111 12457888764 6765554 4555 7888987765432 211 1223344443 4665 55566664  


Q ss_pred             EEEEeccc
Q 004270          623 VYLWVNRC  630 (764)
Q Consensus       623 i~lW~~~~  630 (764)
                      +..++.+.
T Consensus       619 l~~f~p~~  626 (758)
T 3ott_A          619 FGISHSNL  626 (758)
T ss_dssp             EEEEEC--
T ss_pred             eEEEChhh
Confidence            66666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.92  E-value=3.5e-07  Score=85.56  Aligned_cols=182  Identities=12%  Similarity=0.061  Sum_probs=136.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      .....+.++ ++.+..+.+.+|.|+.+|+.+++..... .       .....-.++++.. ++..+..-.++.+.+||..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-------CTTCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-------CCCcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence            445778887 3556666677789999999999988776 2       1122223456553 3455555678999999999


Q ss_pred             CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec--CC---CCeeEEEEcCCCcEEEEEeCCC
Q 004270          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HT---DRITDFCFSEDGKWLLSSGMDG  579 (764)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~--h~---~~i~~l~~s~dg~~l~s~s~dg  579 (764)
                      +.+.+.++.....-.  .+++|++.|+++..++.|+++|.++.+.++++.-  +.   ..++.+.|. +|+..+..-.+.
T Consensus       125 Tl~~~~ti~~~~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          125 PPQRERTTRYSGEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             TTEEEEEEECSSCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             cCcEEEEEeCCCcee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            999999998764433  4447789888888899999999999999888764  22   245677887 787666665788


Q ss_pred             cEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeC
Q 004270          580 SLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       580 ~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d  619 (764)
                      .|.+-|..+|+.+..+...              ...+.+|++|+++.|.+++..
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            9999999999999998753              237899999988877777643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.91  E-value=0.00018  Score=78.69  Aligned_cols=479  Identities=10%  Similarity=-0.001  Sum_probs=266.8

Q ss_pred             EEEEEeCCeEEEEecCCCeEEEecC-CCCcceEEEEEeCC--eEEEEE--CCeEEEEecC-ceEEE-ecccccceEEEEE
Q 004270           29 FVTVSVGKAFHIYNCAKLNLVLVGP-QLPKKIRALASYRD--YTFAAY--GNHIAVVKRA-HQVAT-WSRHSAKVNLLLL  101 (764)
Q Consensus        29 ~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~I~~~~~~~~--~~~~a~--g~~i~vw~~~-~~~~~-~~~h~~~v~~l~~  101 (764)
                      ++..+..+.|+..|+++.......+ ..-....+|++++.  .+|.+-  .+.|..++.. ..+.. +.........+++
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv   87 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV   87 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence            4555678999999998765443332 22356789999974  556554  3348888753 33333 3322245667777


Q ss_pred             e--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC--CCcEEEEeCCCCeEEEE
Q 004270          102 F--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ--EGSLQLWNISTKKKLYE  176 (764)
Q Consensus       102 ~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~  176 (764)
                      |  +..|+.++. .+.|.+.+++.....    ..+.........+++.|..  ..|+....  .+.|...++........
T Consensus        88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~----~l~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           88 DWLGKNLYWADTGTNRIEVSKLDGQHRQ----VLVWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSTTCE----EEECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EeCCCEEEEEECCCCEEEEEecCCCcEE----EEEeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            5  566655554 567888888765431    1111223345677888866  56777653  46777788754433333


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270          177 FKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (764)
Q Consensus       177 ~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~  255 (764)
                      +. .-.....++++++++.|..+.. .+.|...|+..... ..+... ......+++.. +. ++++-...+.|...|..
T Consensus       162 ~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~~P~glav~~-~~-ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          162 VP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LPHPFGLTQYQ-DY-IYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CSCEEEEEEET-TE-EEEEETTTTEEEEEETT
T ss_pred             EC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CCCceEEEEEC-CE-EEEecCCCCEEEEEECC
Confidence            33 3566789999998877777654 57899999875443 333332 34566888765 33 66666667889999977


Q ss_pred             Cceeeeeeecc----------cc-------------cCeeEEEEe-cCCC-----------------------EEEEEcC
Q 004270          256 KRRLQSVIREA----------HD-------------NAIISLHFF-ANEP-----------------------VLMSASA  288 (764)
Q Consensus       256 ~~~~~~~~~~~----------h~-------------~~v~~l~~~-~~~~-----------------------~l~s~~~  288 (764)
                      +++....+...          |.             +....++.. |.+.                       +|+.+. 
T Consensus       237 tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-  315 (628)
T 4a0p_A          237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-  315 (628)
T ss_dssp             TCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-
T ss_pred             CCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-
Confidence            76544333210          10             111112221 1111                       111111 


Q ss_pred             CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      ...|+-..++.... .... ........+..++|.+.+..|+.+. ..+.|..++........                 
T Consensus       316 ~~~i~~i~l~~~~~-~~~~-l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~-----------------  376 (628)
T 4a0p_A          316 KSAINRMVIDEQQS-PDII-LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT-----------------  376 (628)
T ss_dssp             TTEEEEECCCTTCC-CCEE-CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----------------
T ss_pred             cceEEEEecccccC-ceEE-EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE-----------------
Confidence            12222222221110 0000 0011123456777777554554443 34445544432111000                 


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC-C--CCCCCCeEEEEEccCCCEEE-EEe
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP-C--PENPTAVKACTISACGNFAV-LGT  443 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~--~~~~~~v~~~~~s~~g~~l~-~g~  443 (764)
                                                                      .+.. .  ......+..+++...++.|+ +-+
T Consensus       377 ------------------------------------------------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~  408 (628)
T 4a0p_A          377 ------------------------------------------------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE  408 (628)
T ss_dssp             ------------------------------------------------EEC--------CCCEEEEEEETTTTEEEEEET
T ss_pred             ------------------------------------------------EEEcccccccccCCcceEEeeccCCeEEEEcC
Confidence                                                            0000 0  00124678899998876555 555


Q ss_pred             cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCC--eEEEEECCCCCeeeeEecC-cceE
Q 004270          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHG--DIKVWDFKGRDLKSRWEVG-CSLV  519 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~-~~i~  519 (764)
                      ..+.|.+.++. |.....+.       ........+|+++| .|.++++-....  .|...+++........... ....
T Consensus       409 ~~~~I~v~~~~-G~~~~~l~-------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~  480 (628)
T 4a0p_A          409 ATNVINVTRLD-GRSVGVVL-------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPI  480 (628)
T ss_dssp             TTTEEEEEETT-SCEEEEEE-------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCCEEEEEECC-CCeEEEEE-------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCcc
Confidence            67889999986 44433332       13345689999999 455555533322  5666666644433333322 5678


Q ss_pred             EEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe
Q 004270          520 KIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  596 (764)
Q Consensus       520 ~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~  596 (764)
                      .+++.++++.|..+.. .+.|..++++... .+.+. ........|++.. +....+=...+.|...|..+|+....+.
T Consensus       481 gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          481 ALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence            9999998877776654 5889999986543 33333 3344567777754 4444444466778888888777665554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=1.1e-06  Score=83.68  Aligned_cols=190  Identities=11%  Similarity=0.012  Sum_probs=139.3

Q ss_pred             eEEEEEeCC-eEEEEEC----CeEEEEec--CceEEEec-ccccceEEEEEeCCEEEEEec-CCcEEEEEccCCcccccc
Q 004270           59 IRALASYRD-YTFAAYG----NHIAVVKR--AHQVATWS-RHSAKVNLLLLFGEHILSIDI-DGNMFIWAFKGIEENLAP  129 (764)
Q Consensus        59 I~~~~~~~~-~~~~a~g----~~i~vw~~--~~~~~~~~-~h~~~v~~l~~~g~~l~s~~~-dg~v~vWd~~~~~~~~~~  129 (764)
                      ...+++++| ..|+++|    +.|.++|.  ++.+.++. +...-...++++|+.|+.+.. ++.+.++|..+.+.    
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v----   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN----   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE----
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE----
Confidence            578999995 6667775    35999996  45555532 222233467788888877765 67899999999887    


Q ss_pred             eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-----CCeEEEEEcCCCCEEEEEEcCCe
Q 004270          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-----SSISSCVSSPALDVVAVGCSDGK  204 (764)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~sp~~~~la~g~~dg~  204 (764)
                      +.++...  ......+++++  ++++++..++.|.++|..+.+.+..+.-..     ..++.+.|. ++...+....++.
T Consensus        99 ~~~i~~g--~~~g~glt~Dg--~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           99 IKNFTHQ--MKDGWGLATDG--KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEECC--SSSCCEEEECS--SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEEECC--CCCeEEEEECC--CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            6677654  11223466777  667777788999999999999988876321     236788888 6755554446789


Q ss_pred             EEEEEccCCceEEEEeccC------------CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          205 IHVHNVRYDEELVTFTHSM------------RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~------------~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      |.+.|..+++.+..+....            ......++|+|+++.+++++...+.|...++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999999887420            1356899999999878888888899999887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.87  E-value=0.00034  Score=79.36  Aligned_cols=537  Identities=12%  Similarity=0.118  Sum_probs=285.3

Q ss_pred             cccceeeee-ecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEec-CCCCcceEEEEEeCC-eEEEEECCeEEEE
Q 004270            4 FEPYKAIGY-ITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG-PQLPKKIRALASYRD-YTFAAYGNHIAVV   80 (764)
Q Consensus         4 ~~p~r~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~I~~~~~~~~-~~~~a~g~~i~vw   80 (764)
                      |..|+.+.. .++....++......++=+++.+| +..||-.+.+..... ......|.++....+ ..++++...+..|
T Consensus         9 ~~~f~~~~~gl~~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~Gl~~y   87 (758)
T 3ott_A            9 YQQFDNIYLGAEASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVY   87 (758)
T ss_dssp             CCCCEEECCCSSCCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTEEEEE
T ss_pred             hhhhhccccccccceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCCeEEE
Confidence            344555432 122233333333444555555544 667886543322111 122456999888776 5778888889999


Q ss_pred             ecCceEEEe--cccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270           81 KRAHQVATW--SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (764)
Q Consensus        81 ~~~~~~~~~--~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~  158 (764)
                      |..+.....  ......|.++..++..|..++.+ .+..+|..+++........-......+..+....++   .|.+|+
T Consensus        88 d~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lWigt  163 (758)
T 3ott_A           88 NYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN---QIYVGT  163 (758)
T ss_dssp             ETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC---CEEEEE
T ss_pred             eCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC---CEEEEe
Confidence            965432221  11223577766556667777755 588888776554110000000112223333334444   466777


Q ss_pred             CCCcEEEEeCCCCeEEEEE-cCC----CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270          159 QEGSLQLWNISTKKKLYEF-KGW----GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~-~~h----~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs  233 (764)
                      .+| |..+|..+++..... ...    ...|.++...+++..|.+|+. +-+..+|..+++... +.......|.++...
T Consensus       164 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d  240 (758)
T 3ott_A          164 YNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALD  240 (758)
T ss_dssp             TTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEEC
T ss_pred             CCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEc
Confidence            665 888998776543221 111    234888888887776666664 458888987665322 221113468888888


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          234 SDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      .+|.  |..|+.+ -+.+++..+++.......      -....|.++....++.+ -.|+..| +.+...  . ......
T Consensus       241 ~~g~--lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~--~-~~~~~~  312 (758)
T 3ott_A          241 GNGD--LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRY--N-SALQFI  312 (758)
T ss_dssp             TTCC--EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECC--C-C-CEEE
T ss_pred             CCCC--EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-cccccc--C-CceeEE
Confidence            7776  4556644 588888876654322210      12345888887777754 4444455 544321  1 111111


Q ss_pred             Eec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270          308 RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (764)
Q Consensus       308 ~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (764)
                      ...    ......|.++.-..+|..-+ |+.+| +..++..++.... +                               
T Consensus       313 ~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~-~-------------------------------  358 (758)
T 3ott_A          313 PISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHD-A-------------------------------  358 (758)
T ss_dssp             EHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCC-C-------------------------------
T ss_pred             ecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccce-e-------------------------------
Confidence            110    01223567777666665444 45555 5555433211000 0                               


Q ss_pred             cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (764)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~  463 (764)
                                         ..+....        .........|.++....+|+.- +|+ ++-+..|+..++.......
T Consensus       359 -------------------~~~~~~~--------~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~  409 (758)
T 3ott_A          359 -------------------IWYRMGD--------KTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNI  409 (758)
T ss_dssp             -------------------EEECTTC--------SSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEE
T ss_pred             -------------------EEeccCC--------cCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeec
Confidence                               0000000        0000112468888888887754 466 4579999988765432211


Q ss_pred             CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----Cee---eeEec-----CcceEEEEEeecCCEE
Q 004270          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLK---SRWEV-----GCSLVKIVYHRVNGLL  530 (764)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~---~~~~~-----~~~i~~~~~s~~~~~l  530 (764)
                      ....  .......|.++..++++++. .|+..+-|..+|..+.     ...   ..+..     ...|.++...++|.+.
T Consensus       410 ~~~~--~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  486 (758)
T 3ott_A          410 VDNT--GTYNTNWTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVW  486 (758)
T ss_dssp             ECCC----CBSSSEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred             CCCc--CCCCCceEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEE
Confidence            0000  00123568899888887644 4665566777875421     111   11111     1347888888888877


Q ss_pred             EEEeCCCeEEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe---e-CCceEE
Q 004270          531 ATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---V-DVSITA  603 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~-~~~v~~  603 (764)
                      +.++..+-+..+|..+++.......   ....+.++....+|++.+.. ..| +..+|..+++... +.   . ...|.+
T Consensus       487 i~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~-~~~~gl~~~~i~~  563 (758)
T 3ott_A          487 VLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQS-ISFGSFSNNEILS  563 (758)
T ss_dssp             EEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCB-CCCCC---CCEEE
T ss_pred             EEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEE-ecccCCCccceEE
Confidence            6444455688899887765443211   12457888888888876643 455 8888876654321 11   1 233777


Q ss_pred             EEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          604 LSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       604 l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      +... +|.+.++ +.+  ++..++.+
T Consensus       564 i~~~-~g~lWi~-t~~--Gl~~~~~~  585 (758)
T 3ott_A          564 MTCV-KNSIWVS-TTN--GLWIIDRK  585 (758)
T ss_dssp             EEEE-TTEEEEE-ESS--CEEEEETT
T ss_pred             EEEC-CCCEEEE-CCC--CeEEEcCC
Confidence            7764 6655444 444  37777754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.87  E-value=0.00025  Score=77.50  Aligned_cols=509  Identities=10%  Similarity=-0.016  Sum_probs=267.4

Q ss_pred             eEEEEECCeEEEEecCce--EEEe-cccccceEEEEEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCcccc
Q 004270           68 YTFAAYGNHIAVVKRAHQ--VATW-SRHSAKVNLLLLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTP  141 (764)
Q Consensus        68 ~~~~a~g~~i~vw~~~~~--~~~~-~~h~~~v~~l~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~  141 (764)
                      .++++.+..|+..+....  ...+ .+.-.....|+++  ++.|+-++. ++.|..++++....    ...+........
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----EHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCC
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----EEEEeCCCCCcc
Confidence            344566777888876432  2221 1223456778875  456665554 67788888876543    112222223456


Q ss_pred             EEEEeCCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEE
Q 004270          142 TCIMHPDTYLNKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVT  218 (764)
Q Consensus       142 ~~~~~p~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~  218 (764)
                      .+++.+.+  +.|+.+ ...+.|.+.++........+...-.....+++.|....|.....  .+.|...++.... ...
T Consensus        84 GlAvD~~~--~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~  160 (628)
T 4a0p_A           84 GMAVDWLG--KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTT  160 (628)
T ss_dssp             EEEEETTT--TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             eEEEEeCC--CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEE
Confidence            77888776  556554 44678899998654333333344456789999997666766653  4678888876433 333


Q ss_pred             EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (764)
                      +... -.....|++++++..+.++-...+.|...|+..... ..+. .......++++.. +.+.++-...+.|...+..
T Consensus       161 l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          161 LVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EECC-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence            3332 467899999998773555555678899999876543 3333 3334556788765 4444554456767666543


Q ss_pred             CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---------CcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      ++..  .  ..+......+..+......+.-   +.+         ..+.+-... +.....-.               .
T Consensus       237 tg~~--~--~~l~~~~~~p~~i~v~~~~~q~---~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~---------------~  293 (628)
T 4a0p_A          237 SGQN--R--TIIQGHLDYVMDILVFHSSRQS---GWNECASSNGHCSHLCLAVPV-GGFVCGCP---------------A  293 (628)
T ss_dssp             TCCS--C--EEEECSCCSCCEEEEECGGGSC---CCCTTTTTGGGCSSEEEEETT-TEEEEECS---------------T
T ss_pred             CCCc--e--EEEecCCCCcceeeeeeecccc---cceEeccCCCCcchhhhcCCC-CCeeEEcC---------------C
Confidence            3321  1  1111222233344332211000   000         000100000 00000000               0


Q ss_pred             hhcc--CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC
Q 004270          370 ELKL--KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG  446 (764)
Q Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g  446 (764)
                      ...+  ....+..       ....++...  ...++-..+.........+ + ......+.++++.+.++.|+.... .+
T Consensus       294 g~~l~~d~~~C~~-------~~~~Ll~s~--~~~i~~i~l~~~~~~~~~l-~-~~~~~~~~~ld~d~~~~~iy~sD~~~~  362 (628)
T 4a0p_A          294 HYSLNADNRTCSA-------PTTFLLFSQ--KSAINRMVIDEQQSPDIIL-P-IHSLRNVRAIDYDPLDKQLYWIDSRQN  362 (628)
T ss_dssp             TCEECTTSSCEEC-------CSSEEEEEE--TTEEEEECCCTTCCCCEEC-C-CTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CcEecccCCcCcc-------ccceeeeec--cceEEEEecccccCceEEE-E-ehhcCCceEEEEecCCCeEEEEecCcc
Confidence            0000  0000000       001111111  1223222222111101111 1 122356888999998777776654 57


Q ss_pred             cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEe-c-CcceEEEEE
Q 004270          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWE-V-GCSLVKIVY  523 (764)
Q Consensus       447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~-~-~~~i~~~~~  523 (764)
                      .|+.+++........+....  ........+.+++++..++.| ++-+..+.|.+.+++. +....+. . -.....+++
T Consensus       363 ~I~r~~~~g~~~~~v~~~~~--~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iav  439 (628)
T 4a0p_A          363 MIRKAQEDGSQGFTVVVSSV--PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVV  439 (628)
T ss_dssp             EEEEEETTSCSCEEEEC----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEE
T ss_pred             eEEEEEcCCCCceEEEEccc--ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEE
Confidence            88888876543322221000  000123468899999986655 4556778899999864 4443333 2 267899999


Q ss_pred             eecCCEEEEEe-CCC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeC-
Q 004270          524 HRVNGLLATVA-DDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD-  598 (764)
Q Consensus       524 s~~~~~la~~~-~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-  598 (764)
                      .|...+|.... ...  .|...+++...........-...+.|++.++++.|..+. ..+.|...++. |.....+... 
T Consensus       440 dp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~  518 (628)
T 4a0p_A          440 NPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSN  518 (628)
T ss_dssp             ETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSS
T ss_pred             ecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCC
Confidence            99555554443 232  577777764433333333345678999999877776664 45789999985 5545555422 


Q ss_pred             -CceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          599 -VSITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       599 -~~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                       ....+++...  ..|..+......|..-+
T Consensus       519 ~~~P~glav~~--~~ly~tD~~~~~i~~~~  546 (628)
T 4a0p_A          519 ILQPVGLTVFE--NWLYWIDKQQQMIEKID  546 (628)
T ss_dssp             CSCEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEEC--CEEEEEECCCCeEEEEE
Confidence             2366777643  56666665554454433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.84  E-value=1.5e-06  Score=80.78  Aligned_cols=183  Identities=12%  Similarity=0.084  Sum_probs=133.8

Q ss_pred             CCeEEEEEccCCCEEEEEecC--CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      .....+.|++ +.+..+.+..  ..|+.+|+.+++.......       .....-.++++.. ++..+..-.++.+.+||
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-------PPPYFGAGIVAWR-DRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-------CCCcceeEEEEeC-CEEEEEEeeCCEEEEEE
Confidence            5667888886 4444444444  4899999999999887742       1111223444442 34445555789999999


Q ss_pred             CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-----CCeeEEEEcCCCcEEEEEeC
Q 004270          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-----~~i~~l~~s~dg~~l~s~s~  577 (764)
                      ..+.+.+.++.....-.  .+.++++.|+++..++.|+++|..+.+.++++.-..     ..++.+.+. +|+..+..-.
T Consensus        92 ~~tl~~~~ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           92 LATLTPRARFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             TTTTEEEEEEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CCcCcEEEEEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            99999999998775433  444678888888889999999999999888876421     345667776 7776666656


Q ss_pred             CCcEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeC
Q 004270          578 DGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       578 dg~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d  619 (764)
                      +..|.+.|..+|+.+..+...              ...+.++++|+++.|.+++..
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            789999999999999998743              137899999998888887754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=3.5e-06  Score=78.25  Aligned_cols=185  Identities=10%  Similarity=0.095  Sum_probs=131.6

Q ss_pred             ccccc--eEEEEEeCCEEEEEec-C--CcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEE-EeCCCcE
Q 004270           91 RHSAK--VNLLLLFGEHILSIDI-D--GNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIV-GSQEGSL  163 (764)
Q Consensus        91 ~h~~~--v~~l~~~g~~l~s~~~-d--g~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~-~~~dg~i  163 (764)
                      +|...  ...+.+++..|..++. +  +.|++.|+.+++.    +..+..... +...+.+.  +  ++|+. .-.++.+
T Consensus        16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv----~~~~~l~~~~fgeGi~~~--~--~~ly~ltw~~~~v   87 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI----LQRAEVPPPYFGAGIVAW--R--DRLIQLTWRNHEG   87 (243)
T ss_dssp             ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE----EEEEECCTTCCEEEEEEE--T--TEEEEEESSSSEE
T ss_pred             CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCE----EEEEeCCCCcceeEEEEe--C--CEEEEEEeeCCEE
Confidence            56544  4578887776665544 3  3799999999998    666666543 22333343  3  34554 4468899


Q ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC----CCEEEEEEeeCCCCE
Q 004270          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPL  239 (764)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~d~~~~  239 (764)
                      .+||.++.+.+.++......   ..++++++.|.++..++.|.++|..+.+.+.++.....    ..+..+.+. +|+ +
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l  162 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L  162 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred             EEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence            99999999999999754333   23346777787777789999999999999888875311    345667766 676 6


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeecc------------cccCeeEEEEecCCCEEEEEcC
Q 004270          240 LASGASSGVISIWNLEKRRLQSVIREA------------HDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      .+....+..|.+.|.++++.+..+..+            -..-.+.+++.|+++.|+..+.
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            665556889999999999998887722            1135689999998877766664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.77  E-value=2e-06  Score=86.51  Aligned_cols=200  Identities=9%  Similarity=-0.036  Sum_probs=125.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeC---------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGY---------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~---------  494 (764)
                      ..+..+++++++..|+++...+.+..++..++.... +....   ..........+++++ +|++.++-..         
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~-~~~~~---~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQ-LATSV---DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEE-EESEE---TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEE-ecccC---CCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence            356788999744456666555668888877654321 11000   001123578899999 9987776532         


Q ss_pred             --------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccCCe--EEEEeecCCCCeeEE
Q 004270          495 --------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALR--MVRKFEGHTDRITDF  563 (764)
Q Consensus       495 --------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~--~~~~~~~h~~~i~~l  563 (764)
                              ++.|..||..+++.............++++++++.|.++ ..++.|.+|++....  ....+....+ ...+
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi  234 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI  234 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred             eehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence                    367888988777654433333556789999999966665 556899999987521  1112211223 7889


Q ss_pred             EEcCCCcEEEEEeC----------CCcEEEEEcCccceEEEEeeCC-----ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          564 CFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       564 ~~s~dg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~-----~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      ++.++|++.++...          .+.|..+|. .|+.+..+..+.     .++++++ .+|+ |..++.....|..++.
T Consensus       235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC
T ss_pred             EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEec
Confidence            99999997776644          467888885 588888876542     3677777 3554 4444444446888887


Q ss_pred             cccc
Q 004270          629 RCMF  632 (764)
Q Consensus       629 ~~~~  632 (764)
                      +..+
T Consensus       312 ~~~~  315 (322)
T 2fp8_A          312 DKKG  315 (322)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.74  E-value=2.2e-06  Score=80.24  Aligned_cols=186  Identities=12%  Similarity=0.126  Sum_probs=131.0

Q ss_pred             ccccce--EEEEEeCCEE-EEEecCC--cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe-CCCcEE
Q 004270           91 RHSAKV--NLLLLFGEHI-LSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS-QEGSLQ  164 (764)
Q Consensus        91 ~h~~~v--~~l~~~g~~l-~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~-~dg~i~  164 (764)
                      +|...-  ..+.+++..| ++.+.+|  .|+++|+.+++.    +..+...... ...-+.+.+  ++|+... .++.+.
T Consensus        38 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv----~~~~~l~~~~-FgeGit~~g--~~ly~ltw~~~~v~  110 (262)
T 3nol_A           38 PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT----LQQIELGKRY-FGEGISDWK--DKIVGLTWKNGLGF  110 (262)
T ss_dssp             ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE----EEEEECCTTC-CEEEEEEET--TEEEEEESSSSEEE
T ss_pred             cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcE----EEEEecCCcc-ceeEEEEeC--CEEEEEEeeCCEEE
Confidence            555443  6677755554 4555555  799999999998    6666655432 222233344  4566554 578999


Q ss_pred             EEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC-C---CCEEEEEEeeCCCCEE
Q 004270          165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-R---GAVTALAFSSDGQPLL  240 (764)
Q Consensus       165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~l~fs~d~~~~l  240 (764)
                      +||.++++.+.++......   ..++++++.|+....++.|.++|..+.+.+.++.... .   ..+..+.|. +|+ +.
T Consensus       111 v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly  185 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IF  185 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred             EEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EE
Confidence            9999999999999753322   3444677878777778899999999999988877531 1   335567886 776 66


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecc-c----------ccCeeEEEEecCCCEEEEEcC
Q 004270          241 ASGASSGVISIWNLEKRRLQSVIREA-H----------DNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       241 ~sg~~dg~i~iwd~~~~~~~~~~~~~-h----------~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      +....++.|.+.|.++++.+..+... -          ..-.+.++|+|+++.|+..+.
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            66667889999999999998888731 0          135689999999887777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.72  E-value=3.5e-06  Score=78.87  Aligned_cols=184  Identities=11%  Similarity=0.066  Sum_probs=129.8

Q ss_pred             ccccce--EEEEEeCCEEE-EEecCCcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEE-EeCCCcEEE
Q 004270           91 RHSAKV--NLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIV-GSQEGSLQL  165 (764)
Q Consensus        91 ~h~~~v--~~l~~~g~~l~-s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~-~~~dg~i~i  165 (764)
                      .|...-  ..+.++++.|+ +.+.+|.|+++|+++++.    +..+ .... +...+.+  .+  ++|+. .-.++.+.+
T Consensus        50 phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv----~~~~-l~~~~FgeGit~--~g--~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           50 PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQP----VWME-RLGNIFAEGLAS--DG--ERLYQLTWTEGLLFT  120 (268)
T ss_dssp             ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSC----SEEE-ECTTCCEEEEEE--CS--SCEEEEESSSCEEEE
T ss_pred             cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcE----EeEE-CCCCcceeEEEE--eC--CEEEEEEccCCEEEE
Confidence            454433  67888766655 555577899999999998    5555 4432 2223333  44  33444 446889999


Q ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC----CCEEEEEEeeCCCCEEE
Q 004270          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPLLA  241 (764)
Q Consensus       166 wd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~d~~~~l~  241 (764)
                      ||.++++.+.++......   ..++++++.|+++..++.|.++|..+.+.+.++.....    ..+..+.|. +|+ +.+
T Consensus       121 ~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lya  195 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYA  195 (268)
T ss_dssp             EETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             EECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEE
Confidence            999999999999753332   23346788888888889999999999999888875311    245677877 776 666


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecc------------cccCeeEEEEecCCCEEEEEcC
Q 004270          242 SGASSGVISIWNLEKRRLQSVIREA------------HDNAIISLHFFANEPVLMSASA  288 (764)
Q Consensus       242 sg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~l~s~~~  288 (764)
                      ....+..|.+.|.++++.+..+..+            -..-.+.+++.|+++.|+..+.
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6657889999999999998888732            1135689999998776655553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=1e-05  Score=80.51  Aligned_cols=185  Identities=12%  Similarity=0.070  Sum_probs=115.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      ..+..++++++|+++++.....  .|..++..++........       ........++..+++..+++-..++.|.++|
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-------PDAIFLNGITPLSDTQYLTADSYRGAIWLID  144 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-------TTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-------CCccccCcccccCCCcEEEEECCCCeEEEEe
Confidence            3577899999999666554432  477788777765432221       1122345566666555555555688999998


Q ss_pred             CCCCCe-eeeE-------e--cC-cceEEEEEeecCCEEEEEe-CCCeEEEEEccC-CeE--EEEeecCCCCeeEEEEcC
Q 004270          503 FKGRDL-KSRW-------E--VG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSE  567 (764)
Q Consensus       503 ~~~~~~-~~~~-------~--~~-~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~-~~~--~~~~~~h~~~i~~l~~s~  567 (764)
                      ..+++. +...       .  .. .....+  +++++.|.++. ..+.|.+|++.. ++.  ...+.. ......+++++
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~  221 (306)
T 2p4o_A          145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV  221 (306)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT
T ss_pred             CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC
Confidence            775421 1100       0  01 233444  88888666554 568999999874 321  112211 13467799999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCccceEEE--EeeC-CceEEEEEc---CCCCeEEEEEeCC
Q 004270          568 DGKWLLSSGMDGSLRIWDVILARQIDA--IHVD-VSITALSLS---PNMDVLATAHVDQ  620 (764)
Q Consensus       568 dg~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~-~~v~~l~~s---p~g~~lat~~~d~  620 (764)
                      +|+++++....+.|.++|.. |+....  +... ..+++++|.   |++..|..+...+
T Consensus       222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            99987777777899999964 766432  3333 348999999   8988887776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.60  E-value=2.7e-06  Score=94.63  Aligned_cols=114  Identities=7%  Similarity=0.025  Sum_probs=73.9

Q ss_pred             EEEEcC-CCCEEEEEEcCC-----------eEEEEEccCCce--EEEEeccCCCCEEEEEEeeCCCCEEEEEe-CCCcEE
Q 004270          186 SCVSSP-ALDVVAVGCSDG-----------KIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVIS  250 (764)
Q Consensus       186 ~~~~sp-~~~~la~g~~dg-----------~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~  250 (764)
                      ++++.+ ++++++.|+.++           .+.+||..+++-  +..+...+.....++++..+++ +++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence            566777 888888887543           688999988763  3333333233445677888888 888887 456899


Q ss_pred             EEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CC-----CcEEEEEecCC
Q 004270          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-AD-----NSIKMWIFDTT  300 (764)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d-----~~i~vw~~~~~  300 (764)
                      +||..+.+-...-.......-.+++..+++++++.|+ .+     ..+.+||..+.
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            9999877544332211122223556677899888888 34     45777766543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.58  E-value=1.8e-05  Score=79.49  Aligned_cols=152  Identities=11%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             CCeEEEEEcc-CCCEEEEEec-----------------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270          425 TAVKACTISA-CGNFAVLGTA-----------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (764)
Q Consensus       425 ~~v~~~~~s~-~g~~l~~g~~-----------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (764)
                      .....+++.+ +|++.++-..                 +|.|..|+..++......         .......++++++++
T Consensus       126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------~~~~~p~gia~~~dg  196 (322)
T 2fp8_A          126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL---------KELHVPGGAEVSADS  196 (322)
T ss_dssp             SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE---------EEESCCCEEEECTTS
T ss_pred             cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec---------cCCccCcceEECCCC
Confidence            3467788898 8876665432                 367888887766543221         112334679999999


Q ss_pred             CEEEEE-eCCCeEEEEECCCCC--eeeeE-ecCcceEEEEEeecCCEEEEEeC----------CCeEEEEEccCCeEEEE
Q 004270          487 TLMISA-GYHGDIKVWDFKGRD--LKSRW-EVGCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRK  552 (764)
Q Consensus       487 ~~l~s~-~~dg~v~iwd~~~~~--~~~~~-~~~~~i~~~~~s~~~~~la~~~~----------d~~i~v~d~~~~~~~~~  552 (764)
                      +.|+.+ ...+.|.+|++....  ....+ .... ...+++.++|++.++...          .+.|..+|.. ++.+..
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~  274 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV  274 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE
Confidence            866555 566899999987532  11111 2223 778999999987766554          4678888874 777777


Q ss_pred             eecCC----CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270          553 FEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       553 ~~~h~----~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~  588 (764)
                      +....    ..++.+++ .++++.++....+.|.++++..
T Consensus       275 ~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          275 IPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            76442    35777777 4676666666778899998763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=8.4e-05  Score=73.83  Aligned_cols=242  Identities=13%  Similarity=0.070  Sum_probs=141.5

Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC--C
Q 004270          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS--G  247 (764)
Q Consensus       170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d--g  247 (764)
                      ..+.+..+.. ......++++++++++++-..++.|..||... +....+..  ...+..+++.++|+ ++++....  .
T Consensus        21 ~~~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~--~~~p~gia~~~dG~-l~vad~~~~~~   95 (306)
T 2p4o_A           21 PAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV--EGKVSGLAFTSNGD-LVATGWNADSI   95 (306)
T ss_dssp             CEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC--SSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             CceEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC--CCCceeEEEcCCCc-EEEEeccCCcc
Confidence            3455666654 35678899999998666666789999999764 44333333  35789999999998 66555432  2


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE--------eccCCCCCCee
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--------FRSGHSAPPLC  319 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~--------~~~~h~~~v~~  319 (764)
                      .|..+|..+++...............++..+++..+++-..++.|.++|....  ......        ...+.....+.
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~--~~~v~~~~~~~~~~~~~~~~~~png  173 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP--SGSIWLEHPMLARSNSESVFPAANG  173 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT--EEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC--cEeEEEECCccccccccCCCCcCCC
Confidence            47778877877544333112223345555555545555545776666654321  111110        00111123455


Q ss_pred             EEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270          320 IRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (764)
Q Consensus       320 i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (764)
                      +  +++++.|+.+ ...+.|..+++........                                               
T Consensus       174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~-----------------------------------------------  204 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE-----------------------------------------------  204 (306)
T ss_dssp             E--EEETTEEEEEETTTTEEEEEEBCTTSCBCC-----------------------------------------------
T ss_pred             c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc-----------------------------------------------
Confidence            5  7777766554 4567788888753110000                                               


Q ss_pred             CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--eecCccccccccccCc
Q 004270          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYLDMSERSNYAHNGE  476 (764)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~  476 (764)
                                     ...+..    ......++++++|++.++....+.|.+++.. ++...  ...        .....
T Consensus       205 ---------------~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~~~~~  256 (306)
T 2p4o_A          205 ---------------PEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------QGVIG  256 (306)
T ss_dssp             ---------------CEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------GTCTT
T ss_pred             ---------------cEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------cccCC
Confidence                           000000    0234568899999887777778899999975 44322  111        22356


Q ss_pred             EEEEEEC---CCCCEEEEEeCC
Q 004270          477 VVGVACD---STNTLMISAGYH  495 (764)
Q Consensus       477 v~~l~~~---~~~~~l~s~~~d  495 (764)
                      .++++|.   ++++.|+.++..
T Consensus       257 p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEecccCCCCEEEEECCC
Confidence            8899998   787777666543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=0.00011  Score=69.35  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=112.5

Q ss_pred             EEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          176 EFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       176 ~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      .+.+-...+..+++.|+++.| ++...++.|...|.. ++.+..+........-.+++.+++. ++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEc
Confidence            455666789999999987655 457778999999988 8888888654346788999998887 6666556788999987


Q ss_pred             CCcee---eeeee-----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC--CceeeEe----ccCCCCCCeeE
Q 004270          255 EKRRL---QSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG--DPRLLRF----RSGHSAPPLCI  320 (764)
Q Consensus       255 ~~~~~---~~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~--~~~~~~~----~~~h~~~v~~i  320 (764)
                      .....   +....     .........++|.|.+..|+++.......+|.++....  .......    ...+...+..+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   22221     12344568999999998888877766777887762111  1111111    11234568899


Q ss_pred             EEecC-CCEEEEEeCCCcEEEEEee
Q 004270          321 RFYAN-GRHILSAGQDRAFRLFSVI  344 (764)
Q Consensus       321 ~~~~~-~~~l~s~~~dg~i~i~d~~  344 (764)
                      +++|. +++++.....+.+..+|..
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC
Confidence            99994 4455555556667777743

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.54  E-value=0.00078  Score=70.10  Aligned_cols=196  Identities=8%  Similarity=0.024  Sum_probs=117.6

Q ss_pred             ccEEEEeCC--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccC
Q 004270          140 TPTCIMHPD--TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRY  212 (764)
Q Consensus       140 ~~~~~~~p~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~  212 (764)
                      ...++++|+  .  ..|+++...+.|+.+|..+++..... ........++++++|+ |.++...+     .+...+...
T Consensus       141 P~gvavd~~s~~--g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSNY--DDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTTT--CEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CceEEEccccCC--CEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            456778884  3  46777766588999998877765543 3456689999999999 55554321     233344332


Q ss_pred             CceE-EEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCCceeeeee-ecccccCeeEEEEecCCCEE-EEEcC
Q 004270          213 DEEL-VTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVL-MSASA  288 (764)
Q Consensus       213 ~~~~-~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l-~s~~~  288 (764)
                      +... ..+..  ......+++.| +|. +.++-..++.|+.+|..++.....+ ..+....-..++|+|+++.| ++-..
T Consensus       217 ~~~~~~~~~~--~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          217 GFTERLSLCN--ARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             TTCCEEEEEE--CSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             Ceeccccccc--cCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            2211 11211  23456788999 565 6666557788999999877663322 21222233579999999855 44455


Q ss_pred             CCcEEEEEecCCCCCceeeEeccC---------------CCCCCeeEEE---------ecCCCEEEEEeCCCcEEEEE
Q 004270          289 DNSIKMWIFDTTDGDPRLLRFRSG---------------HSAPPLCIRF---------YANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~---------------h~~~v~~i~~---------~~~~~~l~s~~~dg~i~i~d  342 (764)
                      .+.|..++++...+.......+.+               .-..+..+++         .++|.+.++-...+.|+.++
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            678888887643321110011111               1234667888         56666666655667777776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=1.2e-05  Score=89.40  Aligned_cols=273  Identities=13%  Similarity=-0.000  Sum_probs=153.7

Q ss_pred             eEEEEec-CCCEEEEEcCCC-----------cEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeC-CCc
Q 004270          272 ISLHFFA-NEPVLMSASADN-----------SIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQ-DRA  337 (764)
Q Consensus       272 ~~l~~~~-~~~~l~s~~~d~-----------~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~-dg~  337 (764)
                      .+.++.+ ++++++.|+.++           .+.+||..+  ..+..+..+. .+.....++++..+++.++.|+. +..
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence            3567777 888888887543           355565444  3444443332 23334445778889999999884 457


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      +.+||..+..-...                                                                  
T Consensus       267 v~~yd~~t~~W~~~------------------------------------------------------------------  280 (656)
T 1k3i_A          267 TSLYDSSSDSWIPG------------------------------------------------------------------  280 (656)
T ss_dssp             EEEEEGGGTEEEEC------------------------------------------------------------------
T ss_pred             eEEecCcCCceeEC------------------------------------------------------------------
Confidence            88888754321110                                                                  


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEe-cC-----CcEEEEECcCCcccceecCc-cccccccccCcEEEEEECCCCCEEE
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGT-AG-----GWIERFNLQSGISRGSYLDM-SERSNYAHNGEVVGVACDSTNTLMI  490 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~-~~-----g~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~  490 (764)
                      ..... ...-.++++.++|+.+++|+ .+     ..+.+||..+..-...-... .+.....+.     ..+..++..++
T Consensus       281 ~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv  354 (656)
T 1k3i_A          281 PDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWL  354 (656)
T ss_dssp             CCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCE
T ss_pred             CCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-----ceeecCCceEE
Confidence            00000 01123445567899999988 34     47899999876533210000 000000111     11233455555


Q ss_pred             EEeCCC---------eEEEEECCCCCeeeeEecC----------cceEEEEEee-cCCEEEEEeCCC-----------eE
Q 004270          491 SAGYHG---------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHR-VNGLLATVADDL-----------VI  539 (764)
Q Consensus       491 s~~~dg---------~v~iwd~~~~~~~~~~~~~----------~~i~~~~~s~-~~~~la~~~~d~-----------~i  539 (764)
                      .++.+|         .+..||..+..........          ..-.++.+.. +++++++|+.++           .+
T Consensus       355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v  434 (656)
T 1k3i_A          355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII  434 (656)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred             EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence            555444         5678888776543332211          1223344433 677888887532           68


Q ss_pred             EEEEccCCeEEEEe--ecCCCCe-eEEEEcCCCcEEEEEeCC-----------CcEEEEEcCccceEEEEeeCC--c-eE
Q 004270          540 RLFDVVALRMVRKF--EGHTDRI-TDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIHVDV--S-IT  602 (764)
Q Consensus       540 ~v~d~~~~~~~~~~--~~h~~~i-~~l~~s~dg~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~--~-v~  602 (764)
                      .+||..+.+-....  .-+..+. .+++..|+|++++.|+.+           ..+.+||..+++....-....  . ..
T Consensus       435 ~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs  514 (656)
T 1k3i_A          435 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS  514 (656)
T ss_dssp             ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred             EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccccc
Confidence            88888776554433  2233333 345677899999999864           468999998766433211111  1 33


Q ss_pred             EEEEcCCCCeEEEEEe
Q 004270          603 ALSLSPNMDVLATAHV  618 (764)
Q Consensus       603 ~l~~sp~g~~lat~~~  618 (764)
                      +..+.|||+.++.++.
T Consensus       515 ~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          515 ISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECTTSCEEEEECC
T ss_pred             HhhcCCCcEEEecCCC
Confidence            4566799999999885

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.50  E-value=5.7e-05  Score=71.34  Aligned_cols=195  Identities=12%  Similarity=0.100  Sum_probs=134.1

Q ss_pred             CCCCCeEEEEEccCCCEE-EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270          422 ENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i  500 (764)
                      +....+..++++|+++.| ++...++.|..+|.+ +.....+..       .-....-+|++.+++.++++.-.++.+.+
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            444679999999987655 557788899999998 776666531       22356889999999987777667788999


Q ss_pred             EECCCCCe---eeeEe-------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccC---CeEEEEee-------cCCCCe
Q 004270          501 WDFKGRDL---KSRWE-------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFE-------GHTDRI  560 (764)
Q Consensus       501 wd~~~~~~---~~~~~-------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~---~~~~~~~~-------~h~~~i  560 (764)
                      +++.....   +....       .......+++.|.++.|.++.+.....+|.+..   ...+..+.       .+...+
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98765442   22222       124568999999998887777766556665541   11122221       133457


Q ss_pred             eEEEEcCC-CcEEEEEeCCCcEEEEEcCccceEEEEeeCC----------ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          561 TDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       561 ~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      .++++.|. +++++.......|.++|.. |+.+..+....          ..-.++|.++|++.++ +... -+|.+.
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n-~~y~f~  250 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN-RFYRFT  250 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT-EEEEEE
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc-eEEEEE
Confidence            89999985 5666777788899999965 77777776542          3689999999985555 4444 355543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=4.5e-05  Score=79.54  Aligned_cols=193  Identities=9%  Similarity=0.052  Sum_probs=117.9

Q ss_pred             CCeEEEEEccCCCEEEEEecC-C----cEEEEECcCCccc--ceecCccccccccccCcEEEEEECC-CCCEEEEEeCCC
Q 004270          425 TAVKACTISACGNFAVLGTAG-G----WIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHG  496 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~-g----~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg  496 (764)
                      .....++++++|++|+++... +    .+..++.. +...  ..+         .......+++++| ++.++++-..++
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l---------~~~~~p~giavdp~~g~lyv~d~~~~  248 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITEL---------TKGQNCNGAETHPINGELYFNSWNAG  248 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEE---------EECSSCCCEEECTTTCCEEEEETTTT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeee---------ccCCCceEEEEeCCCCEEEEEECCCC
Confidence            567899999999977666542 2    34444433 3222  111         1123456788999 677666666788


Q ss_pred             eEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEE-EeCCCeEEEEEccC--CeE--EEEeecC---C---------
Q 004270          497 DIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGH---T---------  557 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~-~~~d~~i~v~d~~~--~~~--~~~~~~h---~---------  557 (764)
                      .|..++..++.........  .....++++|++++|.+ -...+.|+.++.+.  ++.  +..+.+.   .         
T Consensus       249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  328 (430)
T 3tc9_A          249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKK  328 (430)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGG
T ss_pred             EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcc
Confidence            9999998876653333332  45788999999995554 45678999988763  222  2222221   0         


Q ss_pred             ---CCee-EEEEc--------CCCcEEEEEeCCCcEEEEEcCccceEEEEee---------CC---------ceEEEEEc
Q 004270          558 ---DRIT-DFCFS--------EDGKWLLSSGMDGSLRIWDVILARQIDAIHV---------DV---------SITALSLS  607 (764)
Q Consensus       558 ---~~i~-~l~~s--------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~---------~v~~l~~s  607 (764)
                         ..-. .++..        ++|.+.++-...+.|+.++ ++|........         ..         ....++++
T Consensus       329 a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd  407 (430)
T 3tc9_A          329 ARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD  407 (430)
T ss_dssp             CBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred             eEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence               1122 44443        3466666656678899988 56754443321         11         37899999


Q ss_pred             CCCCeEEEEEeCCCeEEEEec
Q 004270          608 PNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       608 p~g~~lat~~~d~~~i~lW~~  628 (764)
                      |++..|..+......|+..+.
T Consensus       408 ~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          408 EERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEcc
Confidence            965566666655545776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.43  E-value=0.00039  Score=70.20  Aligned_cols=245  Identities=13%  Similarity=0.011  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (764)
Q Consensus       184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~  263 (764)
                      .+|.+..++ .+|+.+.. ..|+..++......... .. ...+..++|.+.+..++++-...+.|..+++........+
T Consensus        36 ~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~-~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           36 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL-NN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEE-CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcccccccC-ceeEeecc-cceEEEeCCCCeeEEee-cC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            345555553 34554443 55888887655443333 32 4568999999766636666667789999998876544443


Q ss_pred             ecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-C-CcEEE
Q 004270          264 REAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-D-RAFRL  340 (764)
Q Consensus       264 ~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d-g~i~i  340 (764)
                      . ........+++.+.+. +.++-...+.|.+.+++...  ...  ........+..++++|.+..|+.+.. . +.|..
T Consensus       112 ~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~--l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          112 S-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             C-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEE--EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             e-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eEE--EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            3 2334567899987554 44555566788888776432  111  12233456789999996655555443 3 45555


Q ss_pred             EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (764)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (764)
                      +++..... ..+                                                                   .
T Consensus       187 ~~~dG~~~-~~~-------------------------------------------------------------------~  198 (349)
T 3v64_C          187 SSMDGSGR-RII-------------------------------------------------------------------A  198 (349)
T ss_dssp             EETTSCSC-EES-------------------------------------------------------------------C
T ss_pred             EeCCCCCc-EEE-------------------------------------------------------------------E
Confidence            55432110 000                                                                   0


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270          421 PENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (764)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~  499 (764)
                      .........+++++++..|+.+.. .+.|..+++........+.        .......++++. .+..+++-...+.|.
T Consensus       199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--------~~~~~P~giav~-~~~ly~td~~~~~V~  269 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--------QGLPHPFAITVF-EDSLYWTDWHTKSIN  269 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--------CCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence            011256789999987777766654 5689999987543322221        223456778884 455556666678888


Q ss_pred             EEECCCCCeeeeEec
Q 004270          500 VWDFKGRDLKSRWEV  514 (764)
Q Consensus       500 iwd~~~~~~~~~~~~  514 (764)
                      .++..+++....+..
T Consensus       270 ~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          270 SANKFTGKNQEIIRN  284 (349)
T ss_dssp             EEETTTCCSCEEEEC
T ss_pred             EEEccCCCccEEecc
Confidence            888666766655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.43  E-value=0.00078  Score=67.01  Aligned_cols=185  Identities=9%  Similarity=-0.023  Sum_probs=115.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccC---CceEEEEeccCCCCEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRY---DEELVTFTHSMRGAVT  228 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~---~~~~~~~~~~~~~~v~  228 (764)
                      .|+.+.. +.|+..|+.+.+....+.. ......++|++++..|..+. .++.|..+++..   +.....+....-....
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            3444443 5699999988776665554 55678999999776666554 458999999875   1222222221124567


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCcee
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~  306 (764)
                      .+++.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+...  +.|...+++...  .+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~  157 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS  157 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEE
Confidence            899987555366666678899999987554333333 334567899999976666555443  566666554321  111


Q ss_pred             eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270          307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI  344 (764)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~  344 (764)
                      +  ....-..+..+++++++..|+.+. ..+.|..+++.
T Consensus       158 ~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          158 L--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             E--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             E--EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            1  122345678999998776666554 45677777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.40  E-value=0.00084  Score=66.74  Aligned_cols=232  Identities=13%  Similarity=0.041  Sum_probs=139.0

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      ...|+..|+.+.+....+.  ....+.+++|.+.+..|+ +-...+.|..++++..................+..+++.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~   86 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence            4579999998877655544  345678999998765555 4445688888877652100011111222334568899987


Q ss_pred             CCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          325 NGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       325 ~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      .+..|+ +-...+.|.++++..... ..+                                                   
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~-~~~---------------------------------------------------  114 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKR-KTL---------------------------------------------------  114 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSE-EEE---------------------------------------------------
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCce-EEE---------------------------------------------------
Confidence            554454 445667788777542110 000                                                   


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                   ..   ........++++|.+..++.....  +.|..+++... ....+.       ...-....+++
T Consensus       115 -------------~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~-------~~~~~~P~gla  170 (316)
T 1ijq_A          115 -------------FR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV-------TENIQWPNGIT  170 (316)
T ss_dssp             -------------EE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE-------CSSCSCEEEEE
T ss_pred             -------------EE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE-------ECCCCCceEEE
Confidence                         00   011456889999977776666543  68888887543 222221       12234678999


Q ss_pred             ECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270          482 CDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       482 ~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      +++++..|..+. ..+.|..+|+...........   ......+++. .+.++++-...+.|..++..+++.+..+...
T Consensus       171 ~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecC
Confidence            998776665554 567899999885443333332   1345677774 3555555566788999998777766666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.38  E-value=0.00078  Score=68.01  Aligned_cols=184  Identities=9%  Similarity=0.007  Sum_probs=116.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .|+.+. ...|+..++........+.. ......++|.+....|.... ..+.|..+++........+... ......++
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~gla  122 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLA  122 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEE
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEE
Confidence            455553 45588888876655554554 45578999998766666554 5688999998765543333322 34567899


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-C-CcEEEEEecCCCCCceeeEe
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-D-NSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-~~i~vw~~~~~~~~~~~~~~  309 (764)
                      +.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+.. . +.|...+++...  ...  .
T Consensus       123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~--~  197 (349)
T 3v64_C          123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI--I  197 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE--S
T ss_pred             EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEE--E
Confidence            987655366666677899999987554333332 33456789999996665555543 3 556666554321  111  1


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI  344 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~  344 (764)
                      .......++.+++++++..|+.+. ..+.|..+++.
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            122345678999998666666554 45667777754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.0006  Score=70.24  Aligned_cols=248  Identities=12%  Similarity=-0.007  Sum_probs=149.1

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      +|+.+. ...|+..++........+.  ....+..++|.+.+..|+.+ ...+.|..++++..................+
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            444443 4689999988765554443  45678899999866655555 4567788887764321111222222344567


Q ss_pred             eeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      ..+++.+.+..|+ +-...+.|.+.++........+                                            
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------------------------------------------  197 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------------------------------------------  197 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------------------------
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------------------------
Confidence            8899988444444 4445666777665422110000                                            


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCcccccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                                           .   ........++++|.+.+|+....  .+.|...++..........        ..-
T Consensus       198 ---------------------~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--------~~l  245 (400)
T 3p5b_L          198 ---------------------R---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI  245 (400)
T ss_dssp             ---------------------E---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--------SSC
T ss_pred             ---------------------e---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--------CCC
Confidence                                 0   01145788999998777776653  3789999887544333221        233


Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE
Q 004270          475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~  550 (764)
                      ....+|++++++..|..+. ..+.|..+|+............   .....+++ ..+.++.+-...+.|..+|..+++.+
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCce
Confidence            5678999998777676654 5678999998765544444331   34456666 33445555566788999998888777


Q ss_pred             EEeecCCCCeeEEEEc
Q 004270          551 RKFEGHTDRITDFCFS  566 (764)
Q Consensus       551 ~~~~~h~~~i~~l~~s  566 (764)
                      ..+........+++..
T Consensus       325 ~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          325 NLLAENLLSPEDMVLF  340 (400)
T ss_dssp             EEEECSCSCEEEEEEE
T ss_pred             EEEecCCCCCceEEEE
Confidence            7776554555666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=8.4e-05  Score=77.49  Aligned_cols=154  Identities=8%  Similarity=0.061  Sum_probs=102.4

Q ss_pred             ccEEEEeC-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC----C-eEEEEEccCC
Q 004270          140 TPTCIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD----G-KIHVHNVRYD  213 (764)
Q Consensus       140 ~~~~~~~p-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d----g-~i~iwd~~~~  213 (764)
                      ...++++| +.  ..|+++...+.|+.+|..+++...... .......+++++++++|.++...    . .+...+. .+
T Consensus       139 P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCEEEEETTEE--EEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCEEEECCCCC--CeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            45677888 35  567777666889999987766554444 45668899999999977766542    1 3444443 33


Q ss_pred             ceE--EEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE-EEEEcCC
Q 004270          214 EEL--VTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASAD  289 (764)
Q Consensus       214 ~~~--~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d  289 (764)
                      ...  ..+..  ......++++| +|. ++++-..++.|..++..++........+.......++|+|++++ .++-...
T Consensus       215 ~~~~~~~l~~--~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTK--GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEE--CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeecc--CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            322  22322  23467788999 565 77766678899999998776533332122345789999999994 4555567


Q ss_pred             CcEEEEEecCC
Q 004270          290 NSIKMWIFDTT  300 (764)
Q Consensus       290 ~~i~vw~~~~~  300 (764)
                      +.|..++.+..
T Consensus       292 ~~I~~~~~d~~  302 (430)
T 3tc9_A          292 HYILRSDYDWK  302 (430)
T ss_dssp             TEEEEEEEETT
T ss_pred             CEEEEEeCCcc
Confidence            88999887753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.36  E-value=0.0002  Score=74.62  Aligned_cols=194  Identities=12%  Similarity=0.063  Sum_probs=116.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCC-----cEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeE
Q 004270          425 TAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI  498 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g-----~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v  498 (764)
                      .....++++++|+ |+++...+     .+..++...+......        ........+++++| ++.+.++-..++.|
T Consensus       182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~--------~~~~~~P~giavd~~~G~lyv~d~~~~~V  252 (433)
T 4hw6_A          182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLS--------LCNARGAKTCAVHPQNGKIYYTRYHHAMI  252 (433)
T ss_dssp             SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEE--------EEECSSBCCCEECTTTCCEEECBTTCSEE
T ss_pred             CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccc--------ccccCCCCEEEEeCCCCeEEEEECCCCEE
Confidence            5688999999999 55554422     2333333222111000        01233456788999 67766666677899


Q ss_pred             EEEECCCCCeeeeE-ecC--cceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CCeE--EEEeecC--------------
Q 004270          499 KVWDFKGRDLKSRW-EVG--CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH--------------  556 (764)
Q Consensus       499 ~iwd~~~~~~~~~~-~~~--~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~~~--~~~~~~h--------------  556 (764)
                      +.++..++.....+ ...  .....++++|+++.|.++ ...+.|+.++..  ++..  ...+.+.              
T Consensus       253 ~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a  332 (433)
T 4hw6_A          253 SSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGA  332 (433)
T ss_dssp             EEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred             EEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccce
Confidence            99998877663322 222  223469999999955555 456899998865  3321  1222221              


Q ss_pred             -CCCeeEEEE---------cCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC------------------CceEEEEEcC
Q 004270          557 -TDRITDFCF---------SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD------------------VSITALSLSP  608 (764)
Q Consensus       557 -~~~i~~l~~---------s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~v~~l~~sp  608 (764)
                       -.....+++         .++|.+.++-...+.|+.++ ++|.........                  .....|+++|
T Consensus       333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~-~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT-PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC-TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC-CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence             123567999         77887777777778999998 466443332110                  1277899994


Q ss_pred             CCCeEEEEEeCCCeEEEEec
Q 004270          609 NMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       609 ~g~~lat~~~d~~~i~lW~~  628 (764)
                      ....|..+......|+..+.
T Consensus       412 ~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          412 KRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEec
Confidence            44445555554445777664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00032  Score=72.03  Aligned_cols=243  Identities=12%  Similarity=-0.015  Sum_probs=144.7

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      +|+.+ ....|+.+++..........  ....+..++|.+.+..|+.+ ...+.|..++.+...    ...........+
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p  161 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESP  161 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----EEEEECSSCSCC
T ss_pred             eeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----cEEEEeCCCCCc
Confidence            34433 34678899987765544443  34467899999766555544 456778777765432    112222233456


Q ss_pred             eeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      ..+++.+.+..|+ +-...+.|.+.++...... .+                                            
T Consensus       162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l--------------------------------------------  196 (386)
T 3v65_B          162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL--------------------------------------------  196 (386)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EE--------------------------------------------
T ss_pred             cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-Ee--------------------------------------------
Confidence            7899988555554 4444566666554321100 00                                            


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECcCCcccceecCcccccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHN  474 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (764)
                                          +   .........++++|.+.+|+.... . +.|..+++..........        ..-
T Consensus       197 --------------------~---~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~--------~~~  245 (386)
T 3v65_B          197 --------------------L---WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD--------THL  245 (386)
T ss_dssp             --------------------E---CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--------SSC
T ss_pred             --------------------e---cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--------CCC
Confidence                                0   011245788999988777666654 3 688888886543322221        223


Q ss_pred             CcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270          475 GEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~  552 (764)
                      ....+|+++|++..|..+ +..+.|..+++........+... .....+++ ..+.++.+-...+.|..++..+++.+..
T Consensus       246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            457899999876655554 45678999998755443333322 45667777 4455556666778899998777777666


Q ss_pred             eecCCCCeeEEEE
Q 004270          553 FEGHTDRITDFCF  565 (764)
Q Consensus       553 ~~~h~~~i~~l~~  565 (764)
                      +.........+++
T Consensus       325 i~~~~~~p~gi~v  337 (386)
T 3v65_B          325 IRNKLHFPMDIHT  337 (386)
T ss_dssp             EECSCSCCCCEEE
T ss_pred             EccCCCCCceEEE
Confidence            6644444555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.34  E-value=0.0019  Score=64.57  Aligned_cols=273  Identities=10%  Similarity=0.036  Sum_probs=146.3

Q ss_pred             CcceEEEEEeCCeEEEEECCe--EEEEec-CceEEE--e--cccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270           56 PKKIRALASYRDYTFAAYGNH--IAVVKR-AHQVAT--W--SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (764)
Q Consensus        56 ~~~I~~~~~~~~~~~~a~g~~--i~vw~~-~~~~~~--~--~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (764)
                      ...+.+|++.++....+.|..  |....- ++.=..  .  ......+.+|.++.+.++.++.+|.|.. ..+.++. ..
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t-W~  112 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS-WS  112 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS-CE
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC-ce
Confidence            457899998765443334433  433322 322111  1  1234578888887777777777775443 2233332 11


Q ss_pred             ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHV  207 (764)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~i  207 (764)
                      .+............+++.+++   .++.++.+|.|..- .+.|+.-... ..+...+..+++.+++.+++++.. |.+..
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~  187 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNG---SAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYS  187 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETT---EEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEE
T ss_pred             ECccccCCCCCeEEEEEECCC---CEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEE
Confidence            111100011122344455554   34555556654332 2234333222 345668899999999888877654 44433


Q ss_pred             -EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeeEEEEecCCCEE
Q 004270          208 -HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVL  283 (764)
Q Consensus       208 -wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l  283 (764)
                       .|- .++.-..+.......+..+.+.+++. ++ .++.+|.+++.+...++.-..+...   +...+.++.+.+++..+
T Consensus       188 S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (327)
T 2xbg_A          188 TWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW  264 (327)
T ss_dssp             EECT-TCSSCEEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred             EeCC-CCCceeECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence             331 13332233333356789999999887 55 4456788887754434433322211   23458899998887766


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +++. ++.+ .+..+.. .....+.....+...+.++.|.+++ .++.++.+|.+.-++
T Consensus       265 ~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          265 LAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             EEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             EEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            6554 6666 3333332 2222222112234677889997655 467777888766554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.34  E-value=0.0013  Score=65.76  Aligned_cols=149  Identities=9%  Similarity=0.026  Sum_probs=89.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ..+..+++.+++.+++++.. |.+..-.-..+..-....       ......+..++++++++.+ .++.+|.+++.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D  233 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHN-------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPD  233 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEE-------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred             cceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECC-------CCCCCccceeEECCCCCEE-EEeCCceEEEecCC
Confidence            46788899999888877654 444433211122222221       1345678899999988755 45567888776533


Q ss_pred             CCCeeeeEe-----cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEEe
Q 004270          505 GRDLKSRWE-----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       505 ~~~~~~~~~-----~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .++.-..+.     ....+..+++.+++.+++++. ++.+ .+..+.++.-..+.   .+...+.++.|.++++ ++.++
T Consensus       234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G  310 (327)
T 2xbg_A          234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG  310 (327)
T ss_dssp             EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred             CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence            333222222     123578888988877777665 5666 34555554444443   2345688999986665 55567


Q ss_pred             CCCcEEEEE
Q 004270          577 MDGSLRIWD  585 (764)
Q Consensus       577 ~dg~i~iwd  585 (764)
                      .+|.|.-++
T Consensus       311 ~~G~i~~~~  319 (327)
T 2xbg_A          311 QKGILLRYV  319 (327)
T ss_dssp             STTEEEEEC
T ss_pred             CCceEEEEc
Confidence            789777665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.31  E-value=0.00065  Score=69.68  Aligned_cols=184  Identities=9%  Similarity=0.006  Sum_probs=115.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (764)
                      .|+.+ ....|+.+++...+....... ......++|.+.+..|.... ..+.|..+++........+... ......++
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~gla  165 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLA  165 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEE
T ss_pred             eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEE
Confidence            45555 445689999877665555554 45578999998766666554 5688999998765543333322 34567789


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCceeeEe
Q 004270          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~~~~  309 (764)
                      +.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+...  +.|...+++..  ....+  
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~--  240 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRII--  240 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEE--
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEE--
Confidence            987655366666677889999987554333333 334567899999877766655543  45555554432  11221  


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270          310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI  344 (764)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~  344 (764)
                      .......+..++++|++..|+.+. ..+.|..+++.
T Consensus       241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            123344678999998666666554 45667777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.26  E-value=5.6e-05  Score=85.27  Aligned_cols=190  Identities=8%  Similarity=-0.004  Sum_probs=115.6

Q ss_pred             CeEEEEEc-cCCCEEEEEecC-C----cEEEEECcCC-cccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---
Q 004270          426 AVKACTIS-ACGNFAVLGTAG-G----WIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---  495 (764)
Q Consensus       426 ~v~~~~~s-~~g~~l~~g~~~-g----~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---  495 (764)
                      .+...++| |||++++.+... |    .|+++|+.++ ..+...          -.....+++|+||++.|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------~~~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------VSGTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------ccCceeeEEEecCCCEEEEEEECCCC
Confidence            67889999 999998876543 3    4999999988 532110          01113468899999888877765   


Q ss_pred             --CeEEEEECCCCCee--eeEec--CcceEEEEEeecCCEEEEEeC---CCeEEEEEccCC--eE-EEEe-ecCCCCeeE
Q 004270          496 --GDIKVWDFKGRDLK--SRWEV--GCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVAL--RM-VRKF-EGHTDRITD  562 (764)
Q Consensus       496 --g~v~iwd~~~~~~~--~~~~~--~~~i~~~~~s~~~~~la~~~~---d~~i~v~d~~~~--~~-~~~~-~~h~~~i~~  562 (764)
                        ..|..+++.+++..  ..+..  ......+.|||||++|+..+.   ...|+++|+.++  +. +..+ .+..+...+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence              36888888876432  22222  234567899999999887763   447888999875  23 1333 334455556


Q ss_pred             EEEcCCCcEEEEEeCC----CcEEEEEcCcc-ceEE-EEeeCCc--eEEEEEcCCCCeEEE-EEeCCCeEEEEec
Q 004270          563 FCFSEDGKWLLSSGMD----GSLRIWDVILA-RQID-AIHVDVS--ITALSLSPNMDVLAT-AHVDQNGVYLWVN  628 (764)
Q Consensus       563 l~~s~dg~~l~s~s~d----g~i~iwd~~~~-~~~~-~~~~~~~--v~~l~~sp~g~~lat-~~~d~~~i~lW~~  628 (764)
                      +.|+.++.+++.+..+    ..|..+|+.++ +... .+.....  +.++.+.  +..|+. ...++ ...||-.
T Consensus       325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g-~~~l~~~  396 (751)
T 2xe4_A          325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAG-LTRIWTM  396 (751)
T ss_dssp             EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETT-EEEEEEE
T ss_pred             EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCC-EEEEEEE
Confidence            6655444444554443    35777777653 3223 3333332  4555554  455544 44455 3444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=0.00013  Score=82.36  Aligned_cols=116  Identities=9%  Similarity=0.036  Sum_probs=69.7

Q ss_pred             CEEEEEEe-eCCCCEEEEEeCCC----cEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEE
Q 004270          226 AVTALAFS-SDGQPLLASGASSG----VISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKM  294 (764)
Q Consensus       226 ~v~~l~fs-~d~~~~l~sg~~dg----~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~v  294 (764)
                      .+...+|| |||+.++++.+.+|    .|+++|+.++ +.+....   ......+.|+||++.|+....|.     .|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99994444444443    4999999998 6432111   12245789999999888776652     3555


Q ss_pred             EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeec
Q 004270          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQ  345 (764)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~  345 (764)
                      +++.+.......+... .+......+.|+|||++|+..+.+   ..|.++|+.+
T Consensus       252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            5544332111222221 222345678899999988866532   3355555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.24  E-value=0.0036  Score=64.38  Aligned_cols=185  Identities=9%  Similarity=-0.022  Sum_probs=117.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCc---eEEEEeccCCCCEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDE---ELVTFTHSMRGAVT  228 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~  228 (764)
                      .|+.+. ...|+..++........+.. ...+..++|++....|.... ..+.|..+++....   ....+.........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            455554 46799999887665555544 56788999999777666654 46889889886521   22233332245688


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCcee
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~  306 (764)
                      .+++.+.+..+.++-...+.|.+.+++.......+. ........+++.|.+..|+.+..  .+.|...+++...  ...
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~~  239 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS  239 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cEE
Confidence            999998555366666678899999987665444443 34456789999997666665543  3566666655331  111


Q ss_pred             eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270          307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI  344 (764)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~  344 (764)
                      +  ....-..+..+++++++..|+.+. ..+.|..+++.
T Consensus       240 ~--~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          240 L--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             E--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             E--EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            1  223345788999998777776664 45667777753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.24  E-value=0.00025  Score=69.41  Aligned_cols=150  Identities=19%  Similarity=0.296  Sum_probs=104.4

Q ss_pred             CCcEEEEECc--CCcccceecCcccccccccc-CcEEEEEE--CCC-CC-EEEEEeCCCeEEEEECC-------CCCeee
Q 004270          445 GGWIERFNLQ--SGISRGSYLDMSERSNYAHN-GEVVGVAC--DST-NT-LMISAGYHGDIKVWDFK-------GRDLKS  510 (764)
Q Consensus       445 ~g~i~i~~~~--~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~-------~~~~~~  510 (764)
                      +++|.+|++.  ++. +.........  .... ..+.++++  ++. ++ +++....+|.+..|++.       +.+.++
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~p--v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR  174 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHP--IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR  174 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSC--EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccC--cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence            4689999773  332 2222110000  0011 55667777  774 44 67888889999999983       346778


Q ss_pred             eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc-----CCeEEEEee-cC-CCCeeEEEE--cCCCc-EEEEEe-CCC
Q 004270          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-----ALRMVRKFE-GH-TDRITDFCF--SEDGK-WLLSSG-MDG  579 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-----~~~~~~~~~-~h-~~~i~~l~~--s~dg~-~l~s~s-~dg  579 (764)
                      ++.....+..+...+....|.++-++..|..++.+     +++.+..+. +| ...+..|++  .++++ ||++++ .+.
T Consensus       175 ~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          175 AFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             EecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            88888999999999999999999999888888865     456676653 23 246888888  56666 666666 677


Q ss_pred             cEEEEEcC-ccceEEEEee
Q 004270          580 SLRIWDVI-LARQIDAIHV  597 (764)
Q Consensus       580 ~i~iwd~~-~~~~~~~~~~  597 (764)
                      +..+||.. +.+.+..|..
T Consensus       255 s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          255 SYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             EEEEEESSTTCCEEEEEEE
T ss_pred             EEEEEECCCCCcEEEEEEe
Confidence            99999997 6777877763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.00062  Score=67.53  Aligned_cols=238  Identities=9%  Similarity=-0.045  Sum_probs=141.9

Q ss_pred             EEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeE
Q 004270          195 VVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (764)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~  273 (764)
                      +|+.+. ...|+..++.... ........ ...+.+++|.+.+..+..+-...+.|..+++..+.....+....-.....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            444443 4678999998664 12112111 24577999998655366666677899999987764322222123345778


Q ss_pred             EEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeecccccc
Q 004270          274 LHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSR  350 (764)
Q Consensus       274 l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~  350 (764)
                      +++.+.+. +.++-...+.|.+++.+...  .+.+  .......+..+++.|.+..|+.+..  .+.|...++.... ..
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~  158 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF  158 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence            99987544 55555567788888776431  1222  2234456789999986656665542  3555555432111 00


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      .+                                                                ..   ..-.....+
T Consensus       159 ~~----------------------------------------------------------------~~---~~l~~Pngl  171 (318)
T 3sov_A          159 II----------------------------------------------------------------IN---SEIYWPNGL  171 (318)
T ss_dssp             EE----------------------------------------------------------------EC---SSCSCEEEE
T ss_pred             EE----------------------------------------------------------------EE---CCCCCccEE
Confidence            00                                                                00   011456889


Q ss_pred             EEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee
Q 004270          431 TISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  509 (764)
Q Consensus       431 ~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  509 (764)
                      ++++++..|+.+. ..+.|..+++.... ...+.       ........++++.. +..+++-...+.|..++..+++..
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~-------~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV-------KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEe-------cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            9999777776665 45789999987433 23222       12334567788763 355566666788999998888776


Q ss_pred             eeEecC
Q 004270          510 SRWEVG  515 (764)
Q Consensus       510 ~~~~~~  515 (764)
                      ..+...
T Consensus       243 ~~i~~~  248 (318)
T 3sov_A          243 REIHSD  248 (318)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            665543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.21  E-value=0.001  Score=66.01  Aligned_cols=240  Identities=10%  Similarity=0.020  Sum_probs=141.5

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      ...|+..++........+.......+.+++|.+.+..|+ +-...+.|..++.+........+   ......+..+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---EECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---cCCCCCccEEEEEc
Confidence            468999999876422222112334577899998655454 44556778888766542211122   12234577899987


Q ss_pred             CCCEE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          325 NGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       325 ~~~~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      .+..| ++-...+.|.++++..... ..+                                                   
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~-~~l---------------------------------------------------  116 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLR-KVL---------------------------------------------------  116 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSC-EEE---------------------------------------------------
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcE-EEE---------------------------------------------------
Confidence            44444 4444566777777542211 000                                                   


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                   .   .........+++.|.+.+++....  .+.|..+++..... ..+.       ...-....+|+
T Consensus       117 -------------~---~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~-------~~~l~~Pngla  172 (318)
T 3sov_A          117 -------------F---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII-------NSEIYWPNGLT  172 (318)
T ss_dssp             -------------E---CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE-------CSSCSCEEEEE
T ss_pred             -------------E---eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE-------ECCCCCccEEE
Confidence                         0   011255788999998777777663  57888888864332 2221       12234568999


Q ss_pred             ECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC
Q 004270          482 CDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR  559 (764)
Q Consensus       482 ~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~  559 (764)
                      +++++..|..+ +..+.|..+|+.......... .......+++. .+.++.+-...+.|..++..+++....+......
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~  251 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSDIFS  251 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSS
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCC
Confidence            99976666555 456789999987544333333 12455667764 3445555556788999998888766666544334


Q ss_pred             eeEEEE
Q 004270          560 ITDFCF  565 (764)
Q Consensus       560 i~~l~~  565 (764)
                      ..+++.
T Consensus       252 P~~i~v  257 (318)
T 3sov_A          252 PMDIHA  257 (318)
T ss_dssp             CCCEEE
T ss_pred             CcEEEE
Confidence            445544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.13  E-value=0.00057  Score=66.93  Aligned_cols=183  Identities=9%  Similarity=0.128  Sum_probs=123.2

Q ss_pred             CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC----CC---EEEEEe-C--CCeEEEEECC
Q 004270          435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST----NT---LMISAG-Y--HGDIKVWDFK  504 (764)
Q Consensus       435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~s~~-~--dg~v~iwd~~  504 (764)
                      ....++.....+-+.+||+ +|+.+..+.        .  +.+..+.+-|+    |+   ++++.. .  +++|.+|++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~--------~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN--------T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC--------C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc--------C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            4456666667789999999 787777663        1  44555555442    22   223333 4  5789999774


Q ss_pred             --CCCeeeeEe-------cC-cceEEEEE--eec-CC-EEEEEeCCCeEEEEEc-------cCCeEEEEeecCCCCeeEE
Q 004270          505 --GRDLKSRWE-------VG-CSLVKIVY--HRV-NG-LLATVADDLVIRLFDV-------VALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       505 --~~~~~~~~~-------~~-~~i~~~~~--s~~-~~-~la~~~~d~~i~v~d~-------~~~~~~~~~~~h~~~i~~l  563 (764)
                        +++ +..+.       .. ..+..+|+  ++. ++ ++++...+|.+..|++       .+.+.+++|.-. +.+..+
T Consensus       108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Egc  185 (355)
T 3amr_A          108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGM  185 (355)
T ss_dssp             TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEE
T ss_pred             CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceE
Confidence              333 33331       12 45666777  564 43 6778888999999988       345778888754 568889


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEEcC-----ccceEEEEeeC---CceEEEEE--cCCCC-eEEEEEeCCCeEEEEeccc
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWDVI-----LARQIDAIHVD---VSITALSL--SPNMD-VLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~---~~v~~l~~--sp~g~-~lat~~~d~~~i~lW~~~~  630 (764)
                      ...+....|..+-+|.-|..++..     +++++..+...   ..+..|++  .++|+ ||++++....++.+|+.+.
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            999888899999998666666644     35566665433   45888888  56666 7888886666899999863

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.06  E-value=0.0034  Score=70.12  Aligned_cols=240  Identities=12%  Similarity=0.005  Sum_probs=141.9

Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      ....|+..++........+.  ....+.+++|.+.+..|+ +-...+.|+.++++..................+..|++.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            34678888887665544443  455678999998655444 445567788887764321111222233345667889999


Q ss_pred             cCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          324 ANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       324 ~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      +.++.|+.+ ...+.|.+.++..... ..+.                                                 
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~-------------------------------------------------  509 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKR-KTLF-------------------------------------------------  509 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------------------------------------------------
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------------------------------------------------
Confidence            876555544 4567777777642211 0000                                                 


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                                     .   ........++++|.+.+|+.... . +.|.+.++..........        ..-....+|
T Consensus       510 ---------------~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--------~~l~~P~GL  563 (791)
T 3m0c_C          510 ---------------R---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGI  563 (791)
T ss_dssp             ---------------E---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSCSCEEEE
T ss_pred             ---------------e---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe--------CCCCCceEE
Confidence                           0   11145789999998777776653 2 689999887544333221        333578899


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEeec
Q 004270          481 ACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEG  555 (764)
Q Consensus       481 ~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~~  555 (764)
                      ++++.+..|+.+. ..+.|...++........+...   .....+++  .+..|+.+ ...+.|...|..+++.+..+..
T Consensus       564 avD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          564 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence            9998776666554 5578999998766555444432   23345555  34444444 4567888888777766666654


Q ss_pred             CCCCeeEEE
Q 004270          556 HTDRITDFC  564 (764)
Q Consensus       556 h~~~i~~l~  564 (764)
                      .......|+
T Consensus       642 ~l~~P~~i~  650 (791)
T 3m0c_C          642 NLLSPEDMV  650 (791)
T ss_dssp             SCSCCCCEE
T ss_pred             CCCCceeEe
Confidence            333334444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0027  Score=66.03  Aligned_cols=231  Identities=8%  Similarity=0.024  Sum_probs=139.5

Q ss_pred             ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-------ccCCCEEEEEecCC-------cEEEEECc
Q 004270          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-------SACGNFAVLGTAGG-------WIERFNLQ  454 (764)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~g~~l~~g~~~g-------~i~i~~~~  454 (764)
                      ...++.+......+++.|.....+... .............++|       +++|++|+++...+       .|.+++..
T Consensus       151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~  229 (496)
T 3kya_A          151 KDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN  229 (496)
T ss_dssp             EEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence            345777777777888888887655332 2221123346899999       99999777776654       26666644


Q ss_pred             C-Cccc-----ceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECC-------CCCe-----------e
Q 004270          455 S-GISR-----GSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK-------GRDL-----------K  509 (764)
Q Consensus       455 ~-~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~-------~~~~-----------~  509 (764)
                      . +...     ..+.         -.....+++++|+ +.++++-..++.|..+|+.       ++..           .
T Consensus       230 ~~G~~~~~~~~~~v~---------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~  300 (496)
T 3kya_A          230 ADGTFDDRSDIQLIA---------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF  300 (496)
T ss_dssp             TTSCCSTTSCEEEEE---------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred             CCCceeecccceeec---------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence            3 2221     1111         1123457789995 5555566678889999987       5553           1


Q ss_pred             ee-Eec--CcceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CCeE--EEEeecC---C------------CCee-EEEE
Q 004270          510 SR-WEV--GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH---T------------DRIT-DFCF  565 (764)
Q Consensus       510 ~~-~~~--~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~~~--~~~~~~h---~------------~~i~-~l~~  565 (764)
                      .. +..  ......++++|+|++|.++ +..+.|+.++..  ++..  ...+.+.   .            .... .++.
T Consensus       301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v  380 (496)
T 3kya_A          301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV  380 (496)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred             ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence            11 222  2456799999999965554 567899996654  3322  1222221   1            1233 3444


Q ss_pred             c-------CCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-------------------------CceEEEEEcCCCCeE
Q 004270          566 S-------EDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-------------------------VSITALSLSPNMDVL  613 (764)
Q Consensus       566 s-------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------------------~~v~~l~~sp~g~~l  613 (764)
                      .       ++|.+.++=...+.|+.++ ++|. +.++.+.                         .....|++++++..|
T Consensus       381 d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~l  458 (496)
T 3kya_A          381 KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMF  458 (496)
T ss_dssp             ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEE
T ss_pred             ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEE
Confidence            4       4666666666788999998 5674 4444321                         126789999874455


Q ss_pred             EEEEeCCCeEEEEecccc
Q 004270          614 ATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       614 at~~~d~~~i~lW~~~~~  631 (764)
                      ..+......|+.++++..
T Consensus       459 yVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          459 YVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEEETTTTEEEEEEECCC
T ss_pred             EEEeCCCCEEEEEECCCC
Confidence            566655556887776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.98  E-value=0.014  Score=58.20  Aligned_cols=268  Identities=15%  Similarity=0.177  Sum_probs=166.0

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      +.+|.|.|+.++..+.+-.-   .--+.-.+|..+.||.-. ...+.|+|+++...+..+...  ..|.-=.|-.+..  
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~--e~VvfWkWis~~~--  118 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT--  118 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEEEETTE--
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC--CCceEEEecCCCe--
Confidence            34788999887654432221   112455788888888766 689999999999999998874  4677777777664  


Q ss_pred             EEEEeCCCcEEEEECCCc-eeeeeeeccc----ccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceee
Q 004270          240 LASGASSGVISIWNLEKR-RLQSVIREAH----DNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~  307 (764)
                      |+..+ +..|+-|++... .+.+.+. -|    ...|..-..++++++++..|-       .|.+.+|..+..     ..
T Consensus       119 l~lVT-~taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~s  191 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VS  191 (494)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CE
T ss_pred             EEEEc-CCeeEEecccCCCCchhhee-cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----cc
Confidence            44444 568999999753 4444554 33    346777777888887775442       367788877654     45


Q ss_pred             EeccCCCCCCeeEEEecCC---CEEEEEeCC---CcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          308 RFRSGHSAPPLCIRFYANG---RHILSAGQD---RAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~---~~l~s~~~d---g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      +.+.||...-..+....+.   ..++.+...   +.+++.++.... ....+...                         
T Consensus       192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk-------------------------  246 (494)
T 1bpo_A          192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK-------------------------  246 (494)
T ss_dssp             EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE-------------------------
T ss_pred             chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce-------------------------
Confidence            5567776544433332211   233333332   567777764321 10000000                         


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                                      ....+-+......-..++.+|+.-..+.+-+.-|.+++||+.++..+.
T Consensus       247 --------------------------------~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          247 --------------------------------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             --------------------------------EEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             --------------------------------eeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence                                            011122223344677889999999999999999999999999998876


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      .-.        -....|..-+.+....-++.....|.|.--.++...
T Consensus       295 ~nr--------Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          295 MNR--------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEE--------CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             eec--------ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            543        334445444444444455555566666555555443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.94  E-value=0.018  Score=57.52  Aligned_cols=281  Identities=12%  Similarity=0.178  Sum_probs=166.2

Q ss_pred             ceeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEE--ECCeEEEE
Q 004270            7 YKAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNHIAVV   80 (764)
Q Consensus         7 ~r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a--~g~~i~vw   80 (764)
                      +..+|.....+.|...+..++.+++.-.    +.++.|-|..+...+...+-   .--+.-++|....+|  .|..+.+|
T Consensus        15 L~~lGi~~~~i~f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALrag~~lQiF   91 (494)
T 1bpo_A           15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIF   91 (494)
T ss_dssp             GGGGTCCTTSCSTTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEETTEEEEE
T ss_pred             hhhcCCCccccccceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEecCCeEEEE
Confidence            3445665566666654444444444433    35789999988554322211   111233556544433  47789999


Q ss_pred             ecCc--eEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCC----ccccEEEEeCCCCCCE
Q 004270           81 KRAH--QVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD----KFTPTCIMHPDTYLNK  153 (764)
Q Consensus        81 ~~~~--~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~  153 (764)
                      +...  +++...-. ..|.-..| +.+.|+-.+ +..|..|++.+...   |.+-++.+.    ..+..-..+++.  ++
T Consensus        92 nle~K~klks~~~~-e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~---P~kvFdR~~~L~~~QIInY~~d~~~--kW  164 (494)
T 1bpo_A           92 NIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ--KW  164 (494)
T ss_dssp             ETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC-SSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTS--SE
T ss_pred             chHHhhhhcceecC-CCceEEEecCCCeEEEEc-CCeeEEecccCCCC---chhheecchhcccceEEEEEECCCC--Ce
Confidence            9754  34443333 35655565 677777776 77899999976332   344444333    333333455655  55


Q ss_pred             EEEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcC---CeEEEEEccCC-------
Q 004270          154 VIVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSD---GKIHVHNVRYD-------  213 (764)
Q Consensus       154 l~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~d---g~i~iwd~~~~-------  213 (764)
                      ++..+       -.|.+++|..+ .+.-+.+.||.+....+...-+   ..+++.+...   +.++|-++...       
T Consensus       165 ~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          165 LLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred             EEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence            55332       24789999974 4566778888655444333221   1245555443   78999988543       


Q ss_pred             -ceEEEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          214 -EELVTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       214 -~~~~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                       +....+...   ..+-..++..++.-. ++..-+.-|.|.+||++++.++..-+ -....|...+......-++.....
T Consensus       244 ~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~  321 (494)
T 1bpo_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRK  321 (494)
T ss_dssp             CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETT
T ss_pred             cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccC
Confidence             111111111   123456777777666 78888899999999999999988877 455566666665555566666677


Q ss_pred             CcEEEEEecCC
Q 004270          290 NSIKMWIFDTT  300 (764)
Q Consensus       290 ~~i~vw~~~~~  300 (764)
                      |.|.--.++..
T Consensus       322 GqVl~v~v~e~  332 (494)
T 1bpo_A          322 GQVLSVCVEEE  332 (494)
T ss_dssp             CEEEEEEECTT
T ss_pred             ceEEEEEEccc
Confidence            76665555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.0092  Score=62.09  Aligned_cols=158  Identities=8%  Similarity=0.029  Sum_probs=96.0

Q ss_pred             CeEEEEEcCC-CCEEEEEEc-CCeEEEEEccCCceEEEEeccC--CCCEEEEEE-------eeCCCCEEEEEeCCC----
Q 004270          183 SISSCVSSPA-LDVVAVGCS-DGKIHVHNVRYDEELVTFTHSM--RGAVTALAF-------SSDGQPLLASGASSG----  247 (764)
Q Consensus       183 ~i~~~~~sp~-~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~f-------s~d~~~~l~sg~~dg----  247 (764)
                      ....|+|+|. ...|.++.. .+.|++.|++++..........  ......++|       +++|. .|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC-EEEEEeCCCCCcc
Confidence            4678999993 555555444 4678889988766554443321  235899999       99998 455554433    


Q ss_pred             ---cEEEEECCC-ceee-----eeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEec-------CCCC-C------
Q 004270          248 ---VISIWNLEK-RRLQ-----SVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFD-------TTDG-D------  303 (764)
Q Consensus       248 ---~i~iwd~~~-~~~~-----~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~-------~~~~-~------  303 (764)
                         .|.+++... +...     ..+.  -......++++|+ +.++++-..++.|..++++       .... .      
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             cCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence               266776444 2322     1222  1224567888995 4555566677889999887       3322 0      


Q ss_pred             ---ceeeEeccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEee
Q 004270          304 ---PRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVI  344 (764)
Q Consensus       304 ---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~  344 (764)
                         ...+.. .+.......++|+|+|+.|+.+ ...+.|+.++..
T Consensus       297 ~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               011111 2334567899999999965554 456777776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.90  E-value=0.0096  Score=66.54  Aligned_cols=185  Identities=9%  Similarity=-0.017  Sum_probs=114.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCc---eEEEEeccCCCCEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDE---ELVTFTHSMRGAVT  228 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~  228 (764)
                      .|+.+ ....|+..++...+....... ...+..+++.+....|.... ..+.|+.+++....   ....+.........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            44444 445688888876655554444 56678999999666665554 45788888887421   12222222245677


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCcee
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRL  306 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~  306 (764)
                      .|++.+.+..+.++-...+.|.+.++........+. ........|++.|.+..|+.+...  +.|.+.+++..  . + 
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~-~-  549 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--D-I-  549 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--C-E-
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--c-e-
Confidence            899998776467777778899999987654433333 344568899999986666665532  55666655432  1 1 


Q ss_pred             eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270          307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI  344 (764)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~  344 (764)
                      ..........+..|++.+.+..|+.+. ..+.|..+++.
T Consensus       550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            122223346788999998666666654 34566666653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.88  E-value=0.0058  Score=61.58  Aligned_cols=190  Identities=10%  Similarity=0.022  Sum_probs=102.6

Q ss_pred             CCeEEEEEccC---CCEEEEEecC------CcEEEEECcCCccc--cee-cCccccccccccCcEEEEEECCCCCEEEEE
Q 004270          425 TAVKACTISAC---GNFAVLGTAG------GWIERFNLQSGISR--GSY-LDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (764)
Q Consensus       425 ~~v~~~~~s~~---g~~l~~g~~~------g~i~i~~~~~~~~~--~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  492 (764)
                      .....++++|+   +..+++....      +.|..|+...+...  ..+ ..........|.  ...++|+|+|.+.++.
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence            56788999998   5666655442      67888887643211  111 100000011233  3589999999877765


Q ss_pred             eCC-------------CeEEEEECCCC------------CeeeeEe-cCcceEEEEEee-cCCEEEEEeCCCeE------
Q 004270          493 GYH-------------GDIKVWDFKGR------------DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVI------  539 (764)
Q Consensus       493 ~~d-------------g~v~iwd~~~~------------~~~~~~~-~~~~i~~~~~s~-~~~~la~~~~d~~i------  539 (764)
                      +..             |.|.-++....            .....+. .......++|+| ++.++++-.....+      
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence            421             45555555431            1111222 224467789999 56655554333331      


Q ss_pred             EEEEccCCe------------------EEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce-------EEE
Q 004270          540 RLFDVVALR------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-------IDA  594 (764)
Q Consensus       540 ~v~d~~~~~------------------~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~-------~~~  594 (764)
                      .|.-+..+.                  ++..+. +......++| .+|.++++.-..+.|...++.....       ...
T Consensus       233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~  310 (352)
T 2ism_A          233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA  310 (352)
T ss_dssp             EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence            122222221                  222332 2234567888 4777777666677788877764431       122


Q ss_pred             EeeCCceEEEEEcCCCCeEEEEEe
Q 004270          595 IHVDVSITALSLSPNMDVLATAHV  618 (764)
Q Consensus       595 ~~~~~~v~~l~~sp~g~~lat~~~  618 (764)
                      +.....+..+++.|||.++++...
T Consensus       311 ~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          311 LSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EESSCCEEEEEECTTSCEEEEECS
T ss_pred             cccCCCeeEEEECCCCcEEEEEeC
Confidence            222345899999999987777643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=0.00013  Score=81.14  Aligned_cols=245  Identities=11%  Similarity=0.004  Sum_probs=136.6

Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (764)
                      ..+.|+..++.+......+.  ....+..++|.+.+..|+.+. ..+.|+.++++..................+..+++.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             CccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            34678888888776655444  234567899998776666554 457888888764110001111111222345678887


Q ss_pred             cC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270          324 AN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (764)
Q Consensus       324 ~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (764)
                      +. ++++++-...+.|.++++........+                                                  
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~--------------------------------------------------  491 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------------------------------------------------  491 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEEC--------------------------------------------------
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEE--------------------------------------------------
Confidence            64 444444445667777775432110000                                                  


Q ss_pred             EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (764)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (764)
                                     .   ........++++|.+.+|+....  .+.|.++++..... ..+.       ...-....+|
T Consensus       492 ---------------~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~-------~~~l~~PnGl  545 (699)
T 1n7d_A          492 ---------------R---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV-------TENIQWPNGI  545 (699)
T ss_dssp             ---------------C---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEES-------CSSCSSCCCE
T ss_pred             ---------------e---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEE-------eCCCCCccEE
Confidence                           0   00133456788887666655543  26788877754322 2221       0122345789


Q ss_pred             EECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270          481 ACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       481 ~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      ++++++..| ++-+..+.|..+++........+...   .....+++.. +.++++....+.|..++..+++.+..+...
T Consensus       546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTT
T ss_pred             EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecC
Confidence            999876544 45556678999998754333332211   2334555543 244445556789999999888888877654


Q ss_pred             CCCeeEEEEcCC
Q 004270          557 TDRITDFCFSED  568 (764)
Q Consensus       557 ~~~i~~l~~s~d  568 (764)
                      ....+.|++.+.
T Consensus       625 ~~~P~~i~v~~~  636 (699)
T 1n7d_A          625 LLSPEDMVLFHQ  636 (699)
T ss_dssp             CSSCCCCCBCSS
T ss_pred             CCCCcEEEEeCc
Confidence            444555655443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.78  E-value=0.0046  Score=60.05  Aligned_cols=163  Identities=14%  Similarity=0.131  Sum_probs=112.3

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEE---CCCCCEEEEEe-------
Q 004270          425 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTLMISAG-------  493 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~l~s~~-------  493 (764)
                      ....+..|.+....+.+++ ..|.|..|+...+........ ...........+.+|.+   +|+++++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445678887666666666 689999999976544332110 00000011224689999   78888777543       


Q ss_pred             ------CCCeEEEEECC---CCCeeeeEecC--------------cceEEEEEeecCCEEEEEeCC-CeEEEEEccCCeE
Q 004270          494 ------YHGDIKVWDFK---GRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRM  549 (764)
Q Consensus       494 ------~dg~v~iwd~~---~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d-~~i~v~d~~~~~~  549 (764)
                            .+..|..+|+.   +++.+......              .....++..++|+..++++.. +.|..++..... 
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence                  26789999999   88877666532              247899999999999998888 888888876442 


Q ss_pred             EEEee------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270          550 VRKFE------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (764)
Q Consensus       550 ~~~~~------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  589 (764)
                      +..+.      ...-..+.|+++|||+.|++...+|.+..+|+.+.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            33221      11223679999999999988877999999998853

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.77  E-value=0.0036  Score=63.10  Aligned_cols=60  Identities=10%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe----E--EEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR----M--VRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~----~--~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .....++| .+|.++++....+.|...+++...    .  ...+-.-..++.++++.|||.++++..
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            45567777 567776666677788888876432    1  222323346789999999998777654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.026  Score=54.84  Aligned_cols=163  Identities=12%  Similarity=0.122  Sum_probs=112.9

Q ss_pred             ecCCccccEEEEeCCCCCCEEEEEe-CCCcEEEEeCCCCeEEEE-EcC----CC--CCeEEEEE---cCCCCEEEEEEc-
Q 004270          134 KLDDKFTPTCIMHPDTYLNKVIVGS-QEGSLQLWNISTKKKLYE-FKG----WG--SSISSCVS---SPALDVVAVGCS-  201 (764)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~----h~--~~i~~~~~---sp~~~~la~g~~-  201 (764)
                      .....+.....|++..  ..+++++ ..++|..||...+..... +.+    ..  ..+..+.+   .|+++++++... 
T Consensus         9 ~~~~~yPE~~~wd~~~--g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTR--QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             CCTTCCCSCEEEETTT--TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCcccCCcCccCcCCC--CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3344556677888877  6788777 689999999876644333 322    11  14578999   688777776442 


Q ss_pred             ------------CCeEEEEEcc---CCceEEEEecc------------CCCCEEEEEEeeCCCCEEEEEeCC-CcEEEEE
Q 004270          202 ------------DGKIHVHNVR---YDEELVTFTHS------------MRGAVTALAFSSDGQPLLASGASS-GVISIWN  253 (764)
Q Consensus       202 ------------dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~l~fs~d~~~~l~sg~~d-g~i~iwd  253 (764)
                                  +..|..+|+.   +++.+......            .......++..++|+ ..++++.. +.|...+
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence                        6789999999   88887766521            113588999999999 77778877 8888888


Q ss_pred             CCCceeeeeee----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270          254 LEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (764)
Q Consensus       254 ~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (764)
                      ...........    .......+.+++.|++..|+.....+.+..+|+..
T Consensus       166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            65442221111    01122467999999999888887799998888763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.54  E-value=0.073  Score=53.44  Aligned_cols=190  Identities=15%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CCeEEEEEccC---CCEEEEEec----C----CcEEEEECcCCc--c--cceecCccccccccccCcEEEEEECCCCCEE
Q 004270          425 TAVKACTISAC---GNFAVLGTA----G----GWIERFNLQSGI--S--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       425 ~~v~~~~~s~~---g~~l~~g~~----~----g~i~i~~~~~~~--~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                      .....++++|+   +..|++...    +    +.|..|+.....  .  ...+..... ....|.  ...++|.|+|.+.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~--~~~l~~~pDG~Ly  149 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHN--GGRIRFGPDGMLY  149 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE-CCSSCC--CCCEEECTTSCEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC-CCCCcC--CceEEECCCCcEE
Confidence            56788999997   556655544    2    567778766541  1  011100000 011233  4679999999877


Q ss_pred             EEEeC-------------CCeEEEEECCCCC-------eeeeEe-cCcceEEEEEee-cCCEEEEEeCCC---eEEEEEc
Q 004270          490 ISAGY-------------HGDIKVWDFKGRD-------LKSRWE-VGCSLVKIVYHR-VNGLLATVADDL---VIRLFDV  544 (764)
Q Consensus       490 ~s~~~-------------dg~v~iwd~~~~~-------~~~~~~-~~~~i~~~~~s~-~~~~la~~~~d~---~i~v~d~  544 (764)
                      ++.+.             .|.|.-++....-       ....+. .......++|+| ++.++++-....   .|.+...
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~  229 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK  229 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence            77543             2455555544220       011222 224567899999 565555433222   2333221


Q ss_pred             cC----------------CeEEEEeecCCCCeeEEEEc-------CCCcEEEEEeCCCcEEEEEcCcc-ceE--EEEee-
Q 004270          545 VA----------------LRMVRKFEGHTDRITDFCFS-------EDGKWLLSSGMDGSLRIWDVILA-RQI--DAIHV-  597 (764)
Q Consensus       545 ~~----------------~~~~~~~~~h~~~i~~l~~s-------~dg~~l~s~s~dg~i~iwd~~~~-~~~--~~~~~-  597 (764)
                      -.                ..++..+.........++|.       .+|+++++.-..+.|...++... +..  ..+.. 
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~  309 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN  309 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence            00                01222331122457788883       57877777767788888888753 333  22321 


Q ss_pred             -CCceEEEEEcCCCCeEEEEE
Q 004270          598 -DVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       598 -~~~v~~l~~sp~g~~lat~~  617 (764)
                       ...+..+++.|||.+.++..
T Consensus       310 ~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          310 VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCeeEEEECCCCcEEEEEe
Confidence             23589999999998776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.00024  Score=78.97  Aligned_cols=179  Identities=9%  Similarity=-0.022  Sum_probs=105.6

Q ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccC----CceEEEEeccCCCCEEEEEEe
Q 004270          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRY----DEELVTFTHSMRGAVTALAFS  233 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~l~fs  233 (764)
                      ..+.|+..++.+.+....+.. ...+..++|.+.+..|..+. ..+.|+.+++..    ......+... ......|++.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECC
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEE
Confidence            345788888877665444433 34567899999777777654 457899998875    1211111111 2235668888


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-C-CcEEEEEecCCCCCceeeEecc
Q 004270          234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-D-NSIKMWIFDTTDGDPRLLRFRS  311 (764)
Q Consensus       234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-~~i~vw~~~~~~~~~~~~~~~~  311 (764)
                      +.+..++++-...+.|.++++........+. ........+++.|.+..|+.+.. . +.|.+.+++....  +.+  ..
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l--~~  536 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSL--VT  536 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEE--SC
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEE--Ee
Confidence            6554366665667899999987654433333 22345678899986655555443 2 5666665543211  111  11


Q ss_pred             CCCCCCeeEEEecCCCEEEE-EeCCCcEEEEEee
Q 004270          312 GHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVI  344 (764)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s-~~~dg~i~i~d~~  344 (764)
                      .....++.|++++++..|+. -+..+.|..+++.
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            23456788999987555544 4455677777764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.45  E-value=0.046  Score=54.92  Aligned_cols=69  Identities=10%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             CCeeEEEEcC-------CCcEEEEEeCCCcEEEEEcCccceEEEEee----CCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270          558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLW  626 (764)
Q Consensus       558 ~~i~~l~~s~-------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~~~i~lW  626 (764)
                      .....++|..       +|+++++.-..+.|...++..++.+.....    ...+..+++.|||.+.++.....  =+||
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~--g~I~  348 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESS--GELL  348 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTT--EEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCC--CEEE
Confidence            3567788863       577777776778888888876655443222    23599999999999776554222  2455


Q ss_pred             ec
Q 004270          627 VN  628 (764)
Q Consensus       627 ~~  628 (764)
                      .+
T Consensus       349 ri  350 (353)
T 2g8s_A          349 KV  350 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.028  Score=55.95  Aligned_cols=191  Identities=13%  Similarity=0.121  Sum_probs=112.3

Q ss_pred             CeEEEEEccCCCEEEEE------------ecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEEECC--CCC-EE
Q 004270          426 AVKACTISACGNFAVLG------------TAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDS--TNT-LM  489 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g------------~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~l  489 (764)
                      ....+++.|+|..+++.            ..+|.|.++|..+... ...+..... ..........++.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence            34556677876444433            2789999999874321 112210000 0011234566777654  443 34


Q ss_pred             EEE-eC--CCeEEEEECCCCC----eeeeEecC--cceEEEEEeecCCEEEEEeC-----------------CCeEEEEE
Q 004270          490 ISA-GY--HGDIKVWDFKGRD----LKSRWEVG--CSLVKIVYHRVNGLLATVAD-----------------DLVIRLFD  543 (764)
Q Consensus       490 ~s~-~~--dg~v~iwd~~~~~----~~~~~~~~--~~i~~~~~s~~~~~la~~~~-----------------d~~i~v~d  543 (764)
                      +.+ ..  +.+|.+|++....    .+..+...  ...+.+.+.++|++.++...                 .|.|.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 33  4678888876532    22233332  56789999999998777541                 23455454


Q ss_pred             ccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCc-cce--EEEEeeCCceEEEEEcC-CCCeEEEEEe
Q 004270          544 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVIL-ARQ--IDAIHVDVSITALSLSP-NMDVLATAHV  618 (764)
Q Consensus       544 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~v~~l~~sp-~g~~lat~~~  618 (764)
                      .  ++.. .+...-..-+.++||||++.|..+. ..+.|..|++.. |++  .+.+......-.+++.+ +|++.++++.
T Consensus       210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence            4  3322 2222234568999999998777654 578899999863 433  23444455588999999 5998887775


Q ss_pred             CC
Q 004270          619 DQ  620 (764)
Q Consensus       619 d~  620 (764)
                      ++
T Consensus       287 ~g  288 (355)
T 3sre_A          287 NG  288 (355)
T ss_dssp             CH
T ss_pred             Cc
Confidence            54

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.025  Score=56.31  Aligned_cols=152  Identities=12%  Similarity=0.068  Sum_probs=95.3

Q ss_pred             EEEEEECCCCCEEEEEe------------CCCeEEEEECCCC--CeeeeEecC--------cceEEEEEee--cCC--EE
Q 004270          477 VVGVACDSTNTLMISAG------------YHGDIKVWDFKGR--DLKSRWEVG--------CSLVKIVYHR--VNG--LL  530 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~--~~~~~~~~~--------~~i~~~~~s~--~~~--~l  530 (764)
                      ...+++.|+|..+++++            .+|.|.++|.++.  +. ..+...        .....+.+.+  ++.  ++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44666788776655552            6899999998742  32 222211        3566777766  354  44


Q ss_pred             EEEeC--CCeEEEEEccCC----eEEEEeecCC-CCeeEEEEcCCCcEEEEEeC---C------------CcEEEEEcCc
Q 004270          531 ATVAD--DLVIRLFDVVAL----RMVRKFEGHT-DRITDFCFSEDGKWLLSSGM---D------------GSLRIWDVIL  588 (764)
Q Consensus       531 a~~~~--d~~i~v~d~~~~----~~~~~~~~h~-~~i~~l~~s~dg~~l~s~s~---d------------g~i~iwd~~~  588 (764)
                      ++-..  +.+|.+|+++..    ..+..+.+.. ...+++.+.++|++.++...   |            ..=++|.+..
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  568888877653    2344555432 45789999999998887651   1            1223444433


Q ss_pred             cceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270          589 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       589 ~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~  629 (764)
                      ++.......-...+.++|||||++|..+......|+.|+++
T Consensus       211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            43333333334589999999999999888766679888876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.28  E-value=0.14  Score=52.89  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCC------Ce-------eeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270          475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGR------DL-------KSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~------~~-------~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~  540 (764)
                      ....++.++|||++++.++ .+.++.++|+...      +.       ....+........+|.++|....+-.-|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            3445688999999998877 5789999998742      11       33445557788999999995555556899999


Q ss_pred             EEEccCC----------eEEEEeecCCCCeeEEEE------cCCCcEEEEEe
Q 004270          541 LFDVVAL----------RMVRKFEGHTDRITDFCF------SEDGKWLLSSG  576 (764)
Q Consensus       541 v~d~~~~----------~~~~~~~~h~~~i~~l~~------s~dg~~l~s~s  576 (764)
                      -|++...          ..+.++.-|-.+ -.+.-      .|||+||++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            9999764          567777766543 23322      67999999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.22  E-value=0.016  Score=56.99  Aligned_cols=219  Identities=11%  Similarity=0.083  Sum_probs=106.2

Q ss_pred             CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeCCCCe-----EEEEEcCCCC
Q 004270          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNISTKK-----KLYEFKGWGS  182 (764)
Q Consensus       113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~-----~~~~~~~h~~  182 (764)
                      ..+.++|..+.+-..  +..+.  .......+...++  ..++.|+.+     ..+.+||..+.+     .+..+.....
T Consensus        31 ~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~  104 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSF--LPSIT--RKRRYVASVSLHD--RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRG  104 (301)
T ss_dssp             CCEEEEETTTTEEEE--CCCCS--SCCBSCEEEEETT--EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCB
T ss_pred             eEEEEEcCCCCeEEe--CCCCC--hhhccccEEEECC--EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcc
Confidence            357888887765321  11111  1111222223344  455566644     468999988765     2222222122


Q ss_pred             CeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEEE
Q 004270          183 SISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISIW  252 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~iw  252 (764)
                      .-.++.+  ++++++.|+.+     ..+.+||+.+++-...-.......-.+++. -++. +++.|+.+     ..+.+|
T Consensus       105 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          105 LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV-IYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE-EEEECCBCSSCBCCCEEEE
T ss_pred             ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE-EEEECCCCCCcccceEEEE
Confidence            2222222  56677777643     468899988765333222221111112222 2666 77777644     468999


Q ss_pred             ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      |+.+.+-...-.......-.++.. -++.+++.|+.+     +.+.+||..+.  .+..+..+....... ++.. -+++
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~-~~~~-~~~~  255 (301)
T 2vpj_A          181 DPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTPRCYV-GATV-LRGR  255 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSC-EEEE-ETTE
T ss_pred             eCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCcccce-eEEE-ECCE
Confidence            998875443321111111112222 256677777654     35666665443  333332222111111 2222 2677


Q ss_pred             EEEEEeCC-----CcEEEEEeecc
Q 004270          328 HILSAGQD-----RAFRLFSVIQD  346 (764)
Q Consensus       328 ~l~s~~~d-----g~i~i~d~~~~  346 (764)
                      .++.|+.+     ..+.+||+.+.
T Consensus       256 i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          256 LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEEEcCcCCCcccccEEEEcCCCC
Confidence            77777755     34667776544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.15  E-value=0.11  Score=50.91  Aligned_cols=202  Identities=9%  Similarity=0.064  Sum_probs=97.3

Q ss_pred             EEEEecCceE-EEe---cccccceEEEEEeCCEEEEEecC-----CcEEEEEccCCc---ccccceeeEecCCccccEEE
Q 004270           77 IAVVKRAHQV-ATW---SRHSAKVNLLLLFGEHILSIDID-----GNMFIWAFKGIE---ENLAPVGHVKLDDKFTPTCI  144 (764)
Q Consensus        77 i~vw~~~~~~-~~~---~~h~~~v~~l~~~g~~l~s~~~d-----g~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~  144 (764)
                      +.+||..... ..+   ......-..+..++..++.|+.+     ..+.+||..+.+   -.  .+..+... .....++
T Consensus        33 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~--~~~~~p~~-r~~~~~~  109 (301)
T 2vpj_A           33 VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY--SVAPMNVR-RGLAGAT  109 (301)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE--EECCCSSC-CBSCEEE
T ss_pred             EEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE--ECCCCCCC-ccceeEE
Confidence            7777754322 121   11122222333456666666644     458899988776   31  12222111 1112222


Q ss_pred             EeCCCCCCEEEEEeCC-----CcEEEEeCCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccC
Q 004270          145 MHPDTYLNKVIVGSQE-----GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRY  212 (764)
Q Consensus       145 ~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~  212 (764)
                      . .++  ..++.|+.+     ..+.+||..+.+-..  .+......-.++.+  ++++++.|+.+     ..+.+||+.+
T Consensus       110 ~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          110 T-LGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             E-ETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             E-ECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            2 244  345555543     358899987765332  22221112222222  66777777654     4688999887


Q ss_pred             CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      ++-...-.......-.+++. -++. +++.|+.+     ..+.+||+.+.+-...-.......-.++.. -++.+++.|+
T Consensus       185 ~~W~~~~~~p~~r~~~~~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG  261 (301)
T 2vpj_A          185 GHWTNVTPMATKRSGAGVAL-LNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAG  261 (301)
T ss_dssp             TEEEEECCCSSCCBSCEEEE-ETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             CcEEeCCCCCcccccceEEE-ECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcC
Confidence            65333211111111112222 2555 77777653     568999998875433321111111112222 2666777776


Q ss_pred             CC
Q 004270          288 AD  289 (764)
Q Consensus       288 ~d  289 (764)
                      .+
T Consensus       262 ~~  263 (301)
T 2vpj_A          262 YD  263 (301)
T ss_dssp             BC
T ss_pred             cC
Confidence            55

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.14  E-value=0.26  Score=49.39  Aligned_cols=143  Identities=13%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc---CCCCCeEEEEEcCC---CCEEEEEEc----C----
Q 004270          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFK---GWGSSISSCVSSPA---LDVVAVGCS----D----  202 (764)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~h~~~i~~~~~sp~---~~~la~g~~----d----  202 (764)
                      .....+++.|++   .|+++..+|.|++++ .+++ .+..+.   ........++++|+   +..|.++..    +    
T Consensus        29 ~~P~~ia~~pdG---~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGG---RYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETT---EEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCC---eEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            344677889988   477777889999997 4565 222221   12356889999998   455555443    3    


Q ss_pred             CeEEEEEccCC-------ceEE-EEeccCCCCEEEEEEeeCCCCEEEEEeC-------------CCcEEEEECCCce---
Q 004270          203 GKIHVHNVRYD-------EELV-TFTHSMRGAVTALAFSSDGQPLLASGAS-------------SGVISIWNLEKRR---  258 (764)
Q Consensus       203 g~i~iwd~~~~-------~~~~-~~~~~~~~~v~~l~fs~d~~~~l~sg~~-------------dg~i~iwd~~~~~---  258 (764)
                      +.|..|+...+       +.+. .+..........|+|.|||. +.++-+.             .|.|.-++....-   
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            56778877654       1111 12211112346799999998 5555332             2456666654320   


Q ss_pred             ----eeeeeecccccCeeEEEEec-CCCEEEEE
Q 004270          259 ----LQSVIREAHDNAIISLHFFA-NEPVLMSA  286 (764)
Q Consensus       259 ----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~  286 (764)
                          ....+..+|. ....++|.| ++.+.++-
T Consensus       184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence                1122222443 356899999 56554443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.10  E-value=0.03  Score=54.99  Aligned_cols=220  Identities=14%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EcCCCCCeE
Q 004270          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNISTKKKLYE--FKGWGSSIS  185 (764)
Q Consensus       113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~i~  185 (764)
                      ..+.++|..+.+-..  +..+... .....++. -++  ..++.|+.+     ..+.+||..+.+-...  +......-.
T Consensus        30 ~~~~~~d~~~~~W~~--~~~~p~~-r~~~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  103 (302)
T 2xn4_A           30 RSVECYDFKEERWHQ--VAELPSR-RCRAGMVY-MAG--LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG  103 (302)
T ss_dssp             CCEEEEETTTTEEEE--ECCCSSC-CBSCEEEE-ETT--EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcEEEEcCcCCcEeE--cccCCcc-cccceEEE-ECC--EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceE
Confidence            347778877664311  1111111 11122222 244  345556543     3588899877653222  111111222


Q ss_pred             EEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-------CCcEEEEE
Q 004270          186 SCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-------SGVISIWN  253 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-------dg~i~iwd  253 (764)
                      ++.+  ++.+++.|+.++     .+.+||+.+.+-...-.......-.+++. -++. +++.|+.       ...+.+||
T Consensus       104 ~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~yd  179 (302)
T 2xn4_A          104 AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL-LYAVGGYDVASRQCLSTVECYN  179 (302)
T ss_dssp             EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEECCEETTTTEECCCEEEEE
T ss_pred             EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE-EEEEeCCCCCCCccccEEEEEe
Confidence            2222  567777777553     57888887765332211111111112222 2565 6666653       24588999


Q ss_pred             CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      +.+.+-...-.......-.++.. -++.+++.|+.++     .+.+||..+  ..+..+..+...... .++.. -+++.
T Consensus       180 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~r~~-~~~~~-~~~~i  254 (302)
T 2xn4_A          180 ATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTT--NAWRQVADMNMCRRN-AGVCA-VNGLL  254 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTT--TEEEEECCCSSCCBS-CEEEE-ETTEE
T ss_pred             CCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCC--CCEeeCCCCCCcccc-CeEEE-ECCEE
Confidence            98775433211011111112222 2566777776543     466665543  333333322211111 12222 26777


Q ss_pred             EEEEeCCC-----cEEEEEeeccc
Q 004270          329 ILSAGQDR-----AFRLFSVIQDQ  347 (764)
Q Consensus       329 l~s~~~dg-----~i~i~d~~~~~  347 (764)
                      ++.|+.++     .+.+||+.+.+
T Consensus       255 ~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          255 YVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEECCcCCCcccccEEEEcCCCCe
Confidence            77777553     47888876553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.10  E-value=0.048  Score=53.66  Aligned_cols=221  Identities=9%  Similarity=0.095  Sum_probs=108.1

Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC----CcEEEEeCCCCeEEEE--EcCCCCCeE
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYE--FKGWGSSIS  185 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~h~~~i~  185 (764)
                      ...+.+||..+.+-..  +..+.  .......+...++  ..++.|+.+    ..+.+||..+.+-...  +........
T Consensus        23 ~~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~   96 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTD--IRCPF--EKRRDAACVFWDN--VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA   96 (306)
T ss_dssp             TTSEEEEETTTTEEEE--CCCCS--CCCBSCEEEEETT--EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCE
T ss_pred             CceEEEecCCCCCEec--CCCCC--cccceeEEEEECC--EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccccee
Confidence            3568888887765421  11111  1111122222344  345566544    5688999887753322  221111222


Q ss_pred             EEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---------CCcEE
Q 004270          186 SCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---------SGVIS  250 (764)
Q Consensus       186 ~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---------dg~i~  250 (764)
                      ++.+  ++++++.|+.+      ..+.+||..+++-...-.......-.+++. -++. +++.|+.         ...+.
T Consensus        97 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A           97 ACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGL-IYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             EEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEECCEESCTTTCEECCCEE
T ss_pred             EEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCE-EEEECCCCCCCCcccccceEE
Confidence            2222  56777777754      468899988775332211111111112222 3566 6666653         35588


Q ss_pred             EEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      +||+.+.+-...-.......-.++... ++.+++.|+.+     ..+.+||..+.  .+..+..+.........+.+  +
T Consensus       173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~  247 (306)
T 3ii7_A          173 VYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--G  247 (306)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--T
T ss_pred             EeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--C
Confidence            999988754333221111111222222 66677777654     34566655433  33333222221222222222  6


Q ss_pred             CCEEEEEeCC-----CcEEEEEeeccc
Q 004270          326 GRHILSAGQD-----RAFRLFSVIQDQ  347 (764)
Q Consensus       326 ~~~l~s~~~d-----g~i~i~d~~~~~  347 (764)
                      ++.++.|+.+     ..+.+||+.+.+
T Consensus       248 ~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          248 SIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            7777788754     456777776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.09  E-value=0.18  Score=49.40  Aligned_cols=196  Identities=8%  Similarity=-0.071  Sum_probs=93.4

Q ss_pred             EeCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEeCCC
Q 004270          101 LFGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST  170 (764)
Q Consensus       101 ~~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd~~~  170 (764)
                      .++..++.|+.+    ..+.++|..+.+-..  +..+.  .......+..-++  ..++.|+.+      ..+.+||..+
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYS--KLGPP--TPRDSLAACAAEG--KIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEE--EECCS--SCCBSCEEEEETT--EEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEE--CCCCC--ccccceeEEEECC--EEEEECCCCCCCcEeeeEEEEeCCC
Confidence            455555555543    457788877765311  11111  1111122222244  355566654      4588999887


Q ss_pred             CeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEc---------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          171 KKKLYE--FKGWGSSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       171 ~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      .+-...  +......-.++.  -++++++.|+.         ...+.+||+.+++-...-.......-.++.. -+++ +
T Consensus       128 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i  203 (306)
T 3ii7_A          128 ESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDK-I  203 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-E
T ss_pred             CceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCE-E
Confidence            653222  111111112222  25666666653         3458899988775332211111111112222 2566 7


Q ss_pred             EEEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEe
Q 004270          240 LASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRF  309 (764)
Q Consensus       240 l~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~  309 (764)
                      ++.|+.+     ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+     +.+.+||.  ....+..+..
T Consensus       204 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~  280 (306)
T 3ii7_A          204 FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSK  280 (306)
T ss_dssp             EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEE
T ss_pred             EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCC
Confidence            7777643     4689999988753322111111111122222 66777777754     33455544  3334444433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.07  E-value=0.3  Score=48.94  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=41.0

Q ss_pred             cCcEEEEEECC-------CCCEEEEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEE
Q 004270          474 NGEVVGVACDS-------TNTLMISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       474 ~~~v~~l~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~  533 (764)
                      .....+++|..       +++++++.-..+.|...++..++.......    ...+..+++.|||.++++.
T Consensus       270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            34678888864       467777766778888888876544333221    2578899999999866654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.05  E-value=0.18  Score=49.03  Aligned_cols=165  Identities=7%  Similarity=0.035  Sum_probs=96.6

Q ss_pred             EEccCCCEEEEEe----cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCC
Q 004270          431 TISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG  505 (764)
Q Consensus       431 ~~s~~g~~l~~g~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~  505 (764)
                      .+++++++|+...    .+..|+..++.... ...+.        .+..    .+++++++.|+-.+. ...|..-++..
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt--------~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK--------NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE--------SSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEe--------CCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence            6778899988776    23466666666433 33332        2221    456778888876654 57788888877


Q ss_pred             CCeeeeEecCcceEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC--CCcE
Q 004270          506 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM--DGSL  581 (764)
Q Consensus       506 ~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~--dg~i  581 (764)
                      +.....+..  .. ...++|++++|+....+  ..|..-+++... ...+..  ..+  ..|+|++++|..++.  .+.|
T Consensus       177 ~~~~~l~~~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i  248 (302)
T 3s25_A          177 QSEALFYDC--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPAL  248 (302)
T ss_dssp             TEEEEEECS--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEE
T ss_pred             CCEEEEeCC--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEE
Confidence            655444332  22 23467999999887654  367777776554 334432  233  347888998886532  3556


Q ss_pred             EEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270          582 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       582 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~  620 (764)
                      ..-++. |.....+... .+.  ++++.+++|.-.....
T Consensus       249 ~~~~~D-G~~r~~l~~~-~~~--~i~i~~d~Iy~td~~~  283 (302)
T 3s25_A          249 CVVKND-GTGFKELAKG-EFC--NINVTSQYVYFTDFVS  283 (302)
T ss_dssp             EEEETT-SCCCEEEEES-CEE--EEEECSSEEEEEETTT
T ss_pred             EEEECC-CCccEEeeCC-ccc--eEEEeCCEEEEEECCC
Confidence            666654 4333333322 233  4455667777665443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.01  E-value=0.065  Score=62.09  Aligned_cols=231  Identities=16%  Similarity=0.204  Sum_probs=141.9

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (764)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (764)
                      ..+|.|.|+.++..+..-   .-.--+.-.+|..+.||.-. ..++.|+|+.+...+..+...  .+|.-=.|-.+..  
T Consensus        47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~--e~VvfWkWis~~~--  118 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT--  118 (1630)
T ss_pred             CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC--CCceEEEecCCCe--
Confidence            347888898876654221   11112345678888887765 688999999999888888764  5677777776654  


Q ss_pred             EEEEeCCCcEEEEECCCc-eeeeeeeccc----ccCeeEEEEecCCCEEEEEc-------CCCcEEEEEecCCCCCceee
Q 004270          240 LASGASSGVISIWNLEKR-RLQSVIREAH----DNAIISLHFFANEPVLMSAS-------ADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       240 l~sg~~dg~i~iwd~~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~-------~d~~i~vw~~~~~~~~~~~~  307 (764)
                      |+..+ +..|..|++... .+.+.+. -|    ...|..-..++++++++..|       -.|.+.+|..+..     ..
T Consensus       119 l~lVT-~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~s  191 (1630)
T 1xi4_A          119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VS  191 (1630)
T ss_pred             eEEEc-CCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cc
Confidence            43333 468999999743 3433333 23    35677777788888777544       3478888877654     34


Q ss_pred             EeccCCCCCCeeEEEec---CCCEEEEEeC---CCcEEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          308 RFRSGHSAPPLCIRFYA---NGRHILSAGQ---DRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~---~~~~l~s~~~---dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                      +.+.||......+....   ....++.+..   .+.+++.++... .....+     .++.                   
T Consensus       192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f-----~kk~-------------------  247 (1630)
T 1xi4_A          192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-----PKKA-------------------  247 (1630)
T ss_pred             hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC-----cccc-------------------
Confidence            44567766554444432   1122222221   256777776443 111000     0000                   


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (764)
                                                       ....-+.........++.+|+.-..+.+-+.-|.+++||+.++..+.
T Consensus       248 ---------------------------------~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          248 ---------------------------------VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             ---------------------------------ccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence                                             01111111223566788889988999999999999999999998875


Q ss_pred             ee
Q 004270          461 SY  462 (764)
Q Consensus       461 ~~  462 (764)
                      .-
T Consensus       295 ~~  296 (1630)
T 1xi4_A          295 MN  296 (1630)
T ss_pred             hc
Confidence            43

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.01  E-value=0.31  Score=48.13  Aligned_cols=112  Identities=17%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee--e---ecccccCeeEEEEecC---CCEEEEE---cCCCcE
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--I---REAHDNAIISLHFFAN---EPVLMSA---SADNSI  292 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~--~---~~~h~~~v~~l~~~~~---~~~l~s~---~~d~~i  292 (764)
                      -.....|+|.|||+ ++++-...|.|++++..+++....  +   ..........++++|+   +..|...   ..++.|
T Consensus        31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            45678999999998 776665589999998766543221  1   1123567899999995   3344332   234455


Q ss_pred             EEEEecCCC------CCce-eeEecc-CCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          293 KMWIFDTTD------GDPR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       293 ~vw~~~~~~------~~~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      .-|.++...      ...+ ++..+. +.......|.|.|||.+.++.+..+
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~  161 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG  161 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence            555544321      0112 222221 2223456799999998777766443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.01  E-value=0.083  Score=51.75  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=111.2

Q ss_pred             CCeEEEEEEeC----CeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEEC-------CeEEEEecCceE-EE---
Q 004270           25 GTENFVTVSVG----KAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYG-------NHIAVVKRAHQV-AT---   88 (764)
Q Consensus        25 ~~~~~~~~~~~----~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g-------~~i~vw~~~~~~-~~---   88 (764)
                      ++..++.++.+    +.+..||..+.+-...... .+..-.+++...+..|+..|       +++.+||..... ..   
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            34455555542    4688999998775544311 12222344455556665544       128888864332 11   


Q ss_pred             ecccccceEEEEEeCCEEEEEecCC-----cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----
Q 004270           89 WSRHSAKVNLLLLFGEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ----  159 (764)
Q Consensus        89 ~~~h~~~v~~l~~~g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~----  159 (764)
                      +......-..+..++..++.|+.++     .+.+||..+.+-..  +..+.. ......++. -++  ..++.|+.    
T Consensus        95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~-~r~~~~~~~-~~~--~iyv~GG~~~~~  168 (302)
T 2xn4_A           95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH--VAPMNT-RRSSVGVGV-VGG--LLYAVGGYDVAS  168 (302)
T ss_dssp             CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE--ECCCSS-CCBSCEEEE-ETT--EEEEECCEETTT
T ss_pred             CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee--cCCCCC-cccCceEEE-ECC--EEEEEeCCCCCC
Confidence            2222222233335676667776553     46778877665321  111111 111122222 233  34455543    


Q ss_pred             ---CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEE
Q 004270          160 ---EGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTA  229 (764)
Q Consensus       160 ---dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~  229 (764)
                         ...+.+||+.+.+-...  +........++.+  ++.+++.|+.+     ..+.+||+.+++-...-.......-.+
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~  246 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG  246 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence               24588999887643222  2211111222222  56777777654     468899988765332211111111111


Q ss_pred             EEEeeCCCCEEEEEeCC-----CcEEEEECCCcee
Q 004270          230 LAFSSDGQPLLASGASS-----GVISIWNLEKRRL  259 (764)
Q Consensus       230 l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~  259 (764)
                      ++ .-++. +++.|+.+     ..+.+||+.+.+-
T Consensus       247 ~~-~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          247 VC-AVNGL-LYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EE-EETTE-EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EE-EECCE-EEEECCcCCCcccccEEEEcCCCCeE
Confidence            22 23566 77777654     3478888877643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.86  E-value=0.081  Score=61.30  Aligned_cols=279  Identities=12%  Similarity=0.184  Sum_probs=157.8

Q ss_pred             ceeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceE--EEEEeCCeEEEEE--CCeEE
Q 004270            7 YKAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIR--ALASYRDYTFAAY--GNHIA   78 (764)
Q Consensus         7 ~r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~--~~~~~~~~~~~a~--g~~i~   78 (764)
                      ...+|.....+.|...+..++.+|+.-.    +.++.|-|..+...+..     .+|.  +.-++|....+|-  |..+.
T Consensus        15 L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~r-----rpi~AdsAIMnP~~~iiALrag~~lQ   89 (1630)
T 1xi4_A           15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKAGKTLQ   89 (1630)
T ss_pred             hhhcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCCCCccc-----ccccchhhccCCCcceEEEecCCeEE
Confidence            4567776677788766666666666554    45799999988665422     2222  2336676555553  66799


Q ss_pred             EEecCce--EEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEec----CCccccEEEEeCCCCC
Q 004270           79 VVKRAHQ--VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL----DDKFTPTCIMHPDTYL  151 (764)
Q Consensus        79 vw~~~~~--~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~  151 (764)
                      ||+....  ++...- ..+|.-..| +.+.|+-.+ +..|..|++.+...   |..-+..    .+..++.-..+++.  
T Consensus        90 iFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~---P~k~fdR~~~L~~~QIinY~~d~~~--  162 (1630)
T 1xi4_A           90 IFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ--  162 (1630)
T ss_pred             EeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCc---cHHHHhcchhcccCeeEEeeeCCCC--
Confidence            9997443  333222 234655565 566666665 77899999976322   2222222    23334444456665  


Q ss_pred             CEEEEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc--C-CCCEEEEEEc---CCeEEEEEccCC---ce
Q 004270          152 NKVIVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSS--P-ALDVVAVGCS---DGKIHVHNVRYD---EE  215 (764)
Q Consensus       152 ~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s--p-~~~~la~g~~---dg~i~iwd~~~~---~~  215 (764)
                      ++++..+       -.|.+.+|.++. +.-+.+.||.+....+...  + ...+++.+..   .+.++|-++...   ..
T Consensus       163 kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~  241 (1630)
T 1xi4_A          163 KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (1630)
T ss_pred             CeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC
Confidence            4444322       348899998743 4555567775544433332  1 1223333322   268888888543   11


Q ss_pred             E-----EEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270          216 L-----VTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       216 ~-----~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      .     ..+..+   ...-..++..++.-. ++..-+.-|.|.++|++++.++..-+ -....|...+......-++...
T Consensus       242 ~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vn  319 (1630)
T 1xi4_A          242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVN  319 (1630)
T ss_pred             CCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEc
Confidence            0     001111   022334556665555 67777889999999999998887766 3444555444444333455555


Q ss_pred             CCCcEEEEEecCC
Q 004270          288 ADNSIKMWIFDTT  300 (764)
Q Consensus       288 ~d~~i~vw~~~~~  300 (764)
                      ..|.|.--.++..
T Consensus       320 r~G~vl~v~v~~~  332 (1630)
T 1xi4_A          320 RKGQVLSVCVEEE  332 (1630)
T ss_pred             CCceEEEEEEccc
Confidence            6666555544433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.86  E-value=0.094  Score=52.52  Aligned_cols=133  Identities=14%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe--------
Q 004270          482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR--------  548 (764)
Q Consensus       482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~--------  548 (764)
                      ...+|..++.+- ++.||.-++......+.+...     ..+..+..+|+|++||..+ +..|.|..+..+.        
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence            344565565554 478888888855555555554     3688999999999999985 5589998887331        


Q ss_pred             ----EEEEeec------CCCCeeEEEEcCC---CcEEEEEeCCCcEEEEEcCccc--eEEEEe-------eC---CceEE
Q 004270          549 ----MVRKFEG------HTDRITDFCFSED---GKWLLSSGMDGSLRIWDVILAR--QIDAIH-------VD---VSITA  603 (764)
Q Consensus       549 ----~~~~~~~------h~~~i~~l~~s~d---g~~l~s~s~dg~i~iwd~~~~~--~~~~~~-------~~---~~v~~  603 (764)
                          ..+.+.-      ...+|..+.|+|-   +..|++-..|++||+||+....  +. .++       ..   ..|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence                1223321      3577999999994   4589999999999999998632  22 222       11   34889


Q ss_pred             EEEcCCCCeEEEEE
Q 004270          604 LSLSPNMDVLATAH  617 (764)
Q Consensus       604 l~~sp~g~~lat~~  617 (764)
                      ++|.++|-.|....
T Consensus       185 ~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          185 LEFSKDGLTLYCLN  198 (452)
T ss_dssp             EEECTTSSCEEEEE
T ss_pred             EEEcCCCcEEEEEe
Confidence            99998776666644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.59  E-value=0.07  Score=52.49  Aligned_cols=229  Identities=13%  Similarity=0.036  Sum_probs=108.1

Q ss_pred             eCCEEEEEec----CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----C-----CcEEEEeC
Q 004270          102 FGEHILSIDI----DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ----E-----GSLQLWNI  168 (764)
Q Consensus       102 ~g~~l~s~~~----dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~----d-----g~i~iwd~  168 (764)
                      ++..++.|+.    -..+.++|..+.+-..  +..+... .....++ ..++  ..++.|+.    +     +.+.+||.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~--~~~~p~~-r~~~~~~-~~~~--~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR--LADLQVP-RSGLAGC-VVGG--LLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEE--CCCCSSC-CBSCEEE-EETT--EEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeE--CCCCCcc-cccceEE-EECC--EEEEECCCcCCCCCCeecceEEEECC
Confidence            4455555543    2357888887765421  1111111 1112222 2244  34555554    2     46888998


Q ss_pred             CCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEE
Q 004270          169 STKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLL  240 (764)
Q Consensus       169 ~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l  240 (764)
                      .+.+-...  +........++.+  ++++++.|+.+     ..+.+||..+++-...-.... ...-.++.+  ++. ++
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iy  172 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL-LY  172 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EE
T ss_pred             CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE-EE
Confidence            77653221  1111112222222  56677776643     468889988765322211111 111122222  565 77


Q ss_pred             EEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEec
Q 004270          241 ASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFR  310 (764)
Q Consensus       241 ~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~  310 (764)
                      +.|+.+     ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+     ..+.+||+...  .+..+..+
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~  249 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPM  249 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCC
Confidence            777643     4689999887754322110111111122222 66677777654     44666665443  33333222


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecc
Q 004270          311 SGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQD  346 (764)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~  346 (764)
                      ...... .++... +++.++.|+.+     ..+.+||+.+.
T Consensus       250 p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          250 KHRRSA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCccc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            211111 122222 66777777644     34667776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.069  Score=52.57  Aligned_cols=112  Identities=10%  Similarity=0.151  Sum_probs=75.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEE--cC-CCCEEEEE-EcCCeEEEEEccCCceEEEEeccC---
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGW-GSSISSCVS--SP-ALDVVAVG-CSDGKIHVHNVRYDEELVTFTHSM---  223 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~--sp-~~~~la~g-~~dg~i~iwd~~~~~~~~~~~~~~---  223 (764)
                      +.+++++.||.|.-+|.++|+.+.+++.. ..++....-  .+ ++..++.. +.||.|..++..+|.....+....   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47999999999999999999999999764 122222110  01 22333333 689999999998886665555321   


Q ss_pred             CCCEEE---EEE------eeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270          224 RGAVTA---LAF------SSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (764)
Q Consensus       224 ~~~v~~---l~f------s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  265 (764)
                      ..++..   ...      + .+. .+++|+.+|.+...|+.+|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~-~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIV-EDE-KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC-----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccc-cCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            112221   000      1 233 688999999999999999999988873

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.53  E-value=0.37  Score=47.38  Aligned_cols=214  Identities=10%  Similarity=0.017  Sum_probs=104.2

Q ss_pred             CeEEEEecCCCeEEEec-CC-CCcceEEEEEeCCeEEEEECC-------------eEEEEecCceE-EEe---cccccce
Q 004270           36 KAFHIYNCAKLNLVLVG-PQ-LPKKIRALASYRDYTFAAYGN-------------HIAVVKRAHQV-ATW---SRHSAKV   96 (764)
Q Consensus        36 ~~i~iwd~~~~~~~~~~-~~-~~~~I~~~~~~~~~~~~a~g~-------------~i~vw~~~~~~-~~~---~~h~~~v   96 (764)
                      +.+..||..+.+-.... +. .+..=.+++...+..|+..|.             .+.+||..... ..+   ......-
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            78999999998754322 21 133334455555666666551             16777764322 221   1111111


Q ss_pred             EEEEEeCCEEEEEecC--------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC------CCc
Q 004270           97 NLLLLFGEHILSIDID--------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ------EGS  162 (764)
Q Consensus        97 ~~l~~~g~~l~s~~~d--------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~------dg~  162 (764)
                      ..+..++..++.|+.+        ..+.++|..+.+-..  +..+  ........+...++  ..++.|+.      -..
T Consensus        93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~--p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPL--PYVVYGHTVLSHMD--LVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCC--SSCCBSCEEEEETT--EEEEECCBCTTSCBCCC
T ss_pred             eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCC--CCcccceeEEEECC--EEEEEeCCCCCCcccce
Confidence            2223355555555532        348888887765311  1111  11122222233344  34555655      246


Q ss_pred             EEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270          163 LQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVTALAFSSD  235 (764)
Q Consensus       163 i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (764)
                      +.+||+.+.+=...  +......-.++.+  ++++++.|+.++     .+.+||+.+++-...-.......-.+++. -+
T Consensus       167 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  243 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LV  243 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             EEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-EC
Confidence            89999887642221  1111111122222  567777887654     58889988765332211111111112222 25


Q ss_pred             CCCEEEEEeCCC--------------cEEEEECCCcee
Q 004270          236 GQPLLASGASSG--------------VISIWNLEKRRL  259 (764)
Q Consensus       236 ~~~~l~sg~~dg--------------~i~iwd~~~~~~  259 (764)
                      ++ +++.|+.++              .+.+||+++.+-
T Consensus       244 ~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          244 GT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             TE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             CE-EEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            55 777776532              356777766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.53  E-value=0.25  Score=49.54  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=95.8

Q ss_pred             CCCCEEEEEEcCCeEEEEEccCCceEEEEeccC---CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee--------
Q 004270          191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM---RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--------  259 (764)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~--------  259 (764)
                      .+|..++++- ++.||.-++..+..-+.+....   -..|..+..+|+|. +||..+ +..|.|-.+..+..        
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccc
Confidence            4455555544 3677777776544444554431   23688899999999 777765 56899988873311        


Q ss_pred             ----eeeeecc-----cccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEE
Q 004270          260 ----QSVIREA-----HDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIR  321 (764)
Q Consensus       260 ----~~~~~~~-----h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~  321 (764)
                          ...+..+     ...+|..+.|+|-   +..|++-..|+.|++||+......+..+.      ........|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence                1122211     2467999999994   45899999999999999987544333221      1122336788899


Q ss_pred             EecCCCEEEEEe--CCCcEEEE
Q 004270          322 FYANGRHILSAG--QDRAFRLF  341 (764)
Q Consensus       322 ~~~~~~~l~s~~--~dg~i~i~  341 (764)
                      |.+++-.|...+  ..|.|.-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            998876666655  66766544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.53  E-value=0.17  Score=49.87  Aligned_cols=208  Identities=9%  Similarity=-0.010  Sum_probs=106.1

Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-----C------CcEEEEECcCCcccceecCcccc
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-----G------GWIERFNLQSGISRGSYLDMSER  468 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----~------g~i~i~~~~~~~~~~~~~~~~~~  468 (764)
                      ..+..||..+.....   ...+.........+...++..++.|+.     .      ..+..||..+..-...-..+.  
T Consensus        13 ~~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--   87 (315)
T 4asc_A           13 EGAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--   87 (315)
T ss_dssp             TEEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--
T ss_pred             CceEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--
Confidence            567888887766432   111111123334444567888888873     1      137788888765322211000  


Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCC--------CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC-C--
Q 004270          469 SNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-D--  536 (764)
Q Consensus       469 ~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d--  536 (764)
                      ....|    ..+.+  +++.++.|+.+        ..+.+||..+.+-...-... ......+..-++++++.|+. +  
T Consensus        88 ~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           88 PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred             chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence            00112    11222  56677777643        35888998876533222222 11112222346677777765 2  


Q ss_pred             ---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC-----cEEEEEcCccceEEEEeeCCc--eEEEEE
Q 004270          537 ---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-----SLRIWDVILARQIDAIHVDVS--ITALSL  606 (764)
Q Consensus       537 ---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~--v~~l~~  606 (764)
                         ..+.+||..+.+-...-.-...+....+..-++++++.|+.++     .+.+||+.+.+-...-..+.+  -.+++.
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  241 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS  241 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE
Confidence               4789999887643322111111111122223778888887654     588899988754433222222  112222


Q ss_pred             cCCCCeEEEEEeC
Q 004270          607 SPNMDVLATAHVD  619 (764)
Q Consensus       607 sp~g~~lat~~~d  619 (764)
                       -++.+++.++.+
T Consensus       242 -~~~~l~v~GG~~  253 (315)
T 4asc_A          242 -LVGTLYAIGGFA  253 (315)
T ss_dssp             -ETTEEEEEEEEE
T ss_pred             -ECCEEEEECCcc
Confidence             266777777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.44  E-value=0.28  Score=51.02  Aligned_cols=153  Identities=11%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---------cCcceEEEEEeec---CCEEEEEeC--------
Q 004270          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRV---NGLLATVAD--------  535 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------~~~~i~~~~~s~~---~~~la~~~~--------  535 (764)
                      ...+|+|.|+|+++++-...+.|++++..+++......         .......++++|+   +..|.+...        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            46799999999977765544578888765554332221         1245678999996   555555442        


Q ss_pred             -----CCeEEEEEccCC-------eEEE-Eeec-CCCCeeEEEEcCCCcEEEEEeCCC----------------------
Q 004270          536 -----DLVIRLFDVVAL-------RMVR-KFEG-HTDRITDFCFSEDGKWLLSSGMDG----------------------  579 (764)
Q Consensus       536 -----d~~i~v~d~~~~-------~~~~-~~~~-h~~~i~~l~~s~dg~~l~s~s~dg----------------------  579 (764)
                           ...|.-++....       +.+. .+.. .......|+|.|||.+.++.+..+                      
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~  187 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQEL  187 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHH
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccc
Confidence                 235555655321       1121 2221 123468999999999777755321                      


Q ss_pred             --------cEEEEEcC-ccc-----------eEEEE-eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          580 --------SLRIWDVI-LAR-----------QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       580 --------~i~iwd~~-~~~-----------~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                              .=+||.+. +|+           ....+ .++.....++|.|+|++.++-+.....-.|.-+
T Consensus       188 ~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~~dein~i  257 (454)
T 1cru_A          188 NGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLI  257 (454)
T ss_dssp             HTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEEEEEC
T ss_pred             cccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCCCeEEEEe
Confidence                    11344432 233           12222 345568999999998877765543322344444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.37  E-value=0.21  Score=49.46  Aligned_cols=142  Identities=13%  Similarity=0.031  Sum_probs=85.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE-------ecCcceEEEEEeec---CCEEEEE-e--CCCeEEE
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-------EVGCSLVKIVYHRV---NGLLATV-A--DDLVIRL  541 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~i~~~~~s~~---~~~la~~-~--~d~~i~v  541 (764)
                      ....+|+|.|+|+++++--..|.|++++..+++.....       ........++++|+   +..|.+. +  .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            45689999999997777665899999986655542211       12367789999995   4445443 2  3456666


Q ss_pred             EEccCC----------eE-EEEeec-CCCCeeEEEEcCCCcEEEEEeC-------------CCcEEEEEcCccc------
Q 004270          542 FDVVAL----------RM-VRKFEG-HTDRITDFCFSEDGKWLLSSGM-------------DGSLRIWDVILAR------  590 (764)
Q Consensus       542 ~d~~~~----------~~-~~~~~~-h~~~i~~l~~s~dg~~l~s~s~-------------dg~i~iwd~~~~~------  590 (764)
                      |.+..+          +. +..+.. ....-..|+|.|||.+.++.+.             -|.|.-.+.. |+      
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nP  190 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNP  190 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCC
Confidence            665541          22 222321 1123467999999987777542             2444434433 22      


Q ss_pred             --eEEEE-eeCCceEEEEEcCCCCeEEEEE
Q 004270          591 --QIDAI-HVDVSITALSLSPNMDVLATAH  617 (764)
Q Consensus       591 --~~~~~-~~~~~v~~l~~sp~g~~lat~~  617 (764)
                        ....+ .++.....++|+|+|++.++-.
T Consensus       191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             STTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             CCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence              01122 2455688999999988766554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.29  E-value=0.2  Score=45.19  Aligned_cols=138  Identities=9%  Similarity=-0.083  Sum_probs=82.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~  546 (764)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+.+...-+...        ..-.++.|.++|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36779999999886666  6777666665442211111111        22478899999998888  558887776532


Q ss_pred             CeE-------EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce------EEEEe-eCC-ceEEEEEcCCCC
Q 004270          547 LRM-------VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ------IDAIH-VDV-SITALSLSPNMD  611 (764)
Q Consensus       547 ~~~-------~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~------~~~~~-~~~-~v~~l~~sp~g~  611 (764)
                      ...       ...-.+--..+..|.|.|+|.+.+..  |+.++-+.-+++..      ...+- ... .-.-+.|+++|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            110       11111112468999999999876655  78765555553321      11111 111 245577999998


Q ss_pred             eEEEEEeCC
Q 004270          612 VLATAHVDQ  620 (764)
Q Consensus       612 ~lat~~~d~  620 (764)
                      ..++.  ++
T Consensus       195 l~~v~--~g  201 (236)
T 1tl2_A          195 LFGVQ--GG  201 (236)
T ss_dssp             EEEEE--TT
T ss_pred             EEEEe--CC
Confidence            88877  55

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.068  Score=52.60  Aligned_cols=113  Identities=9%  Similarity=0.025  Sum_probs=73.8

Q ss_pred             CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEE---ECCCCCEEEEE-eCCCeEEEEECCCCCeeee
Q 004270          436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA---CDSTNTLMISA-GYHGDIKVWDFKGRDLKSR  511 (764)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~  511 (764)
                      +..+++++.||.|+-+|..+|+.+-.+...       ...++....   ...++..++.. ..||.|..++..+|.....
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~   82 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-------NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP   82 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG-------GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence            357899999999999999999998887531       111111110   00123333333 5899999999888865544


Q ss_pred             EecCcceE--EEEEe-----------ecCCEEEEEeCCCeEEEEEccCCeEEEEeec
Q 004270          512 WEVGCSLV--KIVYH-----------RVNGLLATVADDLVIRLFDVVALRMVRKFEG  555 (764)
Q Consensus       512 ~~~~~~i~--~~~~s-----------~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~  555 (764)
                      +.....+.  -+...           ..+..+++|+.+|.+...|+.+|+.+.++..
T Consensus        83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            44332111  01111           1467888999999999999999999888763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.21  E-value=0.081  Score=47.68  Aligned_cols=150  Identities=13%  Similarity=0.031  Sum_probs=86.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc-cccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~  503 (764)
                      ..++.++|+|+|.+.++  .+|.++-.+..+.....-+.. .... ..+-. .-.++.|+|+|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            35669999999997777  888888777655332211110 0000 00111 1378999999987777  5698887775


Q ss_pred             CCCCee------eeE-ecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe------EEEEee-cCCCCeeEEEEcCC
Q 004270          504 KGRDLK------SRW-EVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR------MVRKFE-GHTDRITDFCFSED  568 (764)
Q Consensus       504 ~~~~~~------~~~-~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~------~~~~~~-~h~~~i~~l~~s~d  568 (764)
                      .+....      ..+ ... ..+..+.+.|+|.+.|+.  |+.++-....+..      ....+- +.-..-.-+.|.++
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            332111      111 111 577999999999998888  6665433222111      011111 22233455779999


Q ss_pred             CcEEEEEeCCCcEEEEEc
Q 004270          569 GKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~  586 (764)
                      |.+.+..  ++  ++|..
T Consensus       193 G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          193 GTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             SCEEEEE--TT--EEEEE
T ss_pred             CcEEEEe--CC--eEEec
Confidence            8876655  66  44443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.15  E-value=0.53  Score=46.27  Aligned_cols=220  Identities=8%  Similarity=0.029  Sum_probs=102.8

Q ss_pred             cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEE--EcCC
Q 004270          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ----EG-------SLQLWNISTKKKLYE--FKGW  180 (764)
Q Consensus       114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~--~~~h  180 (764)
                      .+.+||..+.+-..   .............+...++  ..++.|+.    ++       .+..||..+.+-...  +...
T Consensus        25 ~~~~yd~~~~~W~~---~~~~~~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~   99 (318)
T 2woz_A           25 AAVAYDPMENECYL---TALAEQIPRNHSSIVTQQN--QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA   99 (318)
T ss_dssp             EEEEEETTTTEEEE---EEECTTSCSSEEEEECSSS--CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred             ceEEECCCCCceec---ccCCccCCccceEEEEECC--EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc
Confidence            37788887766421   1122112222333344455  45666662    11       177888876643221  1111


Q ss_pred             CCCeEEEEEcCCCCEEEEEEcC-------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC------CC
Q 004270          181 GSSISSCVSSPALDVVAVGCSD-------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS------SG  247 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~------dg  247 (764)
                      ......+.+  ++.+++.|+.+       ..+.+||..+.+-...-.......-.+++ ..++. +++.|+.      ..
T Consensus       100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~  175 (318)
T 2woz_A          100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGM-IYCLGGKTDDKKCTN  175 (318)
T ss_dssp             BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-EETTE-EEEECCEESSSCBCC
T ss_pred             ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-EECCE-EEEEcCCCCCCCccc
Confidence            111122222  56677777754       35788888776533221111011011222 24666 6666653      24


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (764)
                      .+.+||+.+.+-...-.......-.++.. -++.+++.|+.++     .+.+||.  ....+..+..+....... ++..
T Consensus       176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~r~~~-~~~~  251 (318)
T 2woz_A          176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDL--KTNKWEVMTEFPQERSSI-SLVS  251 (318)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEET--TTCCEEECCCCSSCCBSC-EEEE
T ss_pred             eEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEEC--CCCeEEECCCCCCcccce-EEEE
Confidence            68999998875433221111111112222 2566777776543     3445544  443444433322211111 2222


Q ss_pred             ecCCCEEEEEeCC--------------CcEEEEEeeccc
Q 004270          323 YANGRHILSAGQD--------------RAFRLFSVIQDQ  347 (764)
Q Consensus       323 ~~~~~~l~s~~~d--------------g~i~i~d~~~~~  347 (764)
                       -+++.++.|+.+              ..+.+||+.+.+
T Consensus       252 -~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          252 -LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             -ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             -ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence             256677777653              346677765543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.10  E-value=0.38  Score=47.08  Aligned_cols=225  Identities=11%  Similarity=0.079  Sum_probs=111.7

Q ss_pred             CCeEEEEEEe----CCeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEECC-----------eEEEEecCceE-E
Q 004270           25 GTENFVTVSV----GKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGN-----------HIAVVKRAHQV-A   87 (764)
Q Consensus        25 ~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g~-----------~i~vw~~~~~~-~   87 (764)
                      ++..++.++.    -+.+.+||..+.+-...... .+..=.+++...+..|+..|.           .+.+||..+.. .
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            4455555553    24689999998876554321 122223445556666665543           27888864332 2


Q ss_pred             E---ecccccceEEEEEeCCEEEEEecC-----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270           88 T---WSRHSAKVNLLLLFGEHILSIDID-----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (764)
Q Consensus        88 ~---~~~h~~~v~~l~~~g~~l~s~~~d-----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (764)
                      .   +......-..+..++..++.|+.+     ..+.+||..+.+-..  +..+... .....++.. ++  ..++.|+.
T Consensus       104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~-r~~~~~~~~-~~--~iyv~GG~  177 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL--VAPMLTR-RIGVGVAVL-NR--LLYAVGGF  177 (308)
T ss_dssp             ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE--CCCCSSC-CBSCEEEEE-TT--EEEEECCB
T ss_pred             ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE--CCCCCcc-ccceEEEEE-CC--EEEEEeCC
Confidence            2   111122222333466666665543     358888887765421  1111111 111222222 34  34555554


Q ss_pred             C-----CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCE
Q 004270          160 E-----GSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAV  227 (764)
Q Consensus       160 d-----g~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v  227 (764)
                      +     ..+.+||+.+.+-...  +......-.++.+  ++.+++.|+.+     ..+.+||+.+.+-...-.......-
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence            3     4588999877643221  1111111222222  56777777654     5689999887653221111111111


Q ss_pred             EEEEEeeCCCCEEEEEeCC-----CcEEEEECCCcee
Q 004270          228 TALAFSSDGQPLLASGASS-----GVISIWNLEKRRL  259 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~  259 (764)
                      .+++. -+++ +++.|+.+     ..+.+||+++.+-
T Consensus       256 ~~~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          256 LGITV-HQGR-IYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CEEEE-ETTE-EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             eEEEE-ECCE-EEEEcCcCCCcccceEEEEcCCCCEE
Confidence            12222 2555 77777643     4577888776643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.09  E-value=0.58  Score=46.92  Aligned_cols=141  Identities=9%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             CeEEEEEccCCceEEEEeccCCCCE-EEEEEeeCCCCEEEEEeC------CCcEEEEEC--CCceeeeeeec-ccccCee
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAV-TALAFSSDGQPLLASGAS------SGVISIWNL--EKRRLQSVIRE-AHDNAII  272 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v-~~l~fs~d~~~~l~sg~~------dg~i~iwd~--~~~~~~~~~~~-~h~~~v~  272 (764)
                      ..+.+||..+.+-...-.......- .+++.. ++. +++.|+.      ...+.+||+  .+.+-...-.. .......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTE-EEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCE-EEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            5789999887753332222211111 233332 555 6666653      346777887  44432221110 0111111


Q ss_pred             EEEEecCCCEEEEEcCC----------------------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270          273 SLHFFANEPVLMSASAD----------------------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       273 ~l~~~~~~~~l~s~~~d----------------------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (764)
                      ..+...++.+++.|+.+                      ..+.+||++.  ..+..+..+......-.  +..-+++.++
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~--~~~~~~~i~v  321 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN--GKWDKSGELSQGRAYGV--SLPWNNSLLI  321 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSE--EEEETTEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC--CceeeCCCCCCCcccce--eEEeCCEEEE
Confidence            11223366677777632                      1455666553  34455544433222222  2334778888


Q ss_pred             EEeCCC------cEEEEEeeccccc
Q 004270          331 SAGQDR------AFRLFSVIQDQQS  349 (764)
Q Consensus       331 s~~~dg------~i~i~d~~~~~~~  349 (764)
                      .||.++      .+.++++.+++..
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            888653      2445566655443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.07  E-value=1.2  Score=43.32  Aligned_cols=136  Identities=6%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             cCCCCEEEEEEc--CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-------------CcEEEEEC
Q 004270          190 SPALDVVAVGCS--DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-------------GVISIWNL  254 (764)
Q Consensus       190 sp~~~~la~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-------------g~i~iwd~  254 (764)
                      ++++.+|.....  ++.|...+.. |.....+...     .+--++++|..+..+...+             ..|+..++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~-----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND-----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE-----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC-----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            345666665542  4555555543 3334444332     1334578888455554433             46788888


Q ss_pred             CCceeeeeeecccccCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270          255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (764)
Q Consensus       255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (764)
                      ..++......    .  .+..|++++..|+-..  .++.-.||.++......+.+.   .+..    .+++++++.|+-.
T Consensus        96 dg~~~~~l~~----~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt---~~~~----~~~~~~g~~iy~t  162 (302)
T 3s25_A           96 NGHGSTVLDP----D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK---NHYL----FTCNTSDRYFYYN  162 (302)
T ss_dssp             TSCCCEEEEC----S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE---SSCC----CCSEEETTEEEEE
T ss_pred             CCCcceEeec----C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe---CCCc----eEeeEECCEEEEE
Confidence            7665333222    1  1236778888888776  456666776665543333322   2222    3457778888766


Q ss_pred             eC-CCcEEEEEee
Q 004270          333 GQ-DRAFRLFSVI  344 (764)
Q Consensus       333 ~~-dg~i~i~d~~  344 (764)
                      +. ...|...++.
T Consensus       163 ~~g~~~Iy~~~l~  175 (302)
T 3s25_A          163 NPKNGQLYRYDTA  175 (302)
T ss_dssp             CTTTCCEEEEETT
T ss_pred             eCCCceEEEEECC
Confidence            54 4555555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.07  E-value=1.2  Score=43.77  Aligned_cols=216  Identities=12%  Similarity=0.082  Sum_probs=104.3

Q ss_pred             CCeEEEEecCCCeEEEec-C-CCCcceEEEEEeCCeEEEEECC---------e----EEEEecCceE-EEe---cccccc
Q 004270           35 GKAFHIYNCAKLNLVLVG-P-QLPKKIRALASYRDYTFAAYGN---------H----IAVVKRAHQV-ATW---SRHSAK   95 (764)
Q Consensus        35 ~~~i~iwd~~~~~~~~~~-~-~~~~~I~~~~~~~~~~~~a~g~---------~----i~vw~~~~~~-~~~---~~h~~~   95 (764)
                      +..+..||..+.+-.... + ..+..-.+++...+.+|+..|.         .    +.+||..... ..+   ......
T Consensus        23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            356899999987754422 1 1233344555556677776662         1    6667753321 221   111122


Q ss_pred             eEEEEEeCCEEEEEecC-------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC------CCc
Q 004270           96 VNLLLLFGEHILSIDID-------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ------EGS  162 (764)
Q Consensus        96 v~~l~~~g~~l~s~~~d-------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~------dg~  162 (764)
                      -.....++..++.|+.+       ..+.++|..+.+-..  +..+  ........+...++  ..++.|+.      -..
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~--p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE--VKNL--PIKVYGHNVISHNG--MIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE--ECCC--SSCEESCEEEEETT--EEEEECCEESSSCBCCC
T ss_pred             cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeE--CCCC--CCcccccEEEEECC--EEEEEcCCCCCCCccce
Confidence            22333466666666654       237777877655321  1111  11111122222344  34455543      235


Q ss_pred             EEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270          163 LQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD  235 (764)
Q Consensus       163 i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (764)
                      +.+||+.+.+-...  +....... +++. -++++++.|+.+     ..+.+||+.+++-...-.......-.+++ .-+
T Consensus       177 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~  253 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLA  253 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EET
T ss_pred             EEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EEC
Confidence            89999887653222  11111111 2222 256777777643     35778888776532211111111111222 234


Q ss_pred             CCCEEEEEeCC--------------CcEEEEECCCceee
Q 004270          236 GQPLLASGASS--------------GVISIWNLEKRRLQ  260 (764)
Q Consensus       236 ~~~~l~sg~~d--------------g~i~iwd~~~~~~~  260 (764)
                      +. +++.|+.+              ..+.+||+.+.+-.
T Consensus       254 ~~-i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          254 GS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             TE-EEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             CE-EEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            55 67776643              35777777766443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.88  E-value=0.22  Score=50.17  Aligned_cols=220  Identities=11%  Similarity=0.015  Sum_probs=105.7

Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCC-CCCCCeEEEEEccCCCEEEEEec-C---------CcEEEEECcCCcccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCP-ENPTAVKACTISACGNFAVLGTA-G---------GWIERFNLQSGISRG  460 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~-~---------g~i~i~~~~~~~~~~  460 (764)
                      .+.++.....+..+|.......-..+...+ .......++.+  +++.++.|+. +         ..+.+||..+..-..
T Consensus        23 yv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~  100 (357)
T 2uvk_A           23 YIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK  100 (357)
T ss_dssp             EEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEE
T ss_pred             EEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEE
Confidence            344445556788888764211112222222 11222223333  5677777765 2         468899988765332


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCC---------------------------------------CeEEEE
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---------------------------------------GDIKVW  501 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------------------g~v~iw  501 (764)
                      .-... +    ........+.  .++++++.|+.+                                       ..+.+|
T Consensus       101 ~~~~~-p----~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A          101 LMSHA-P----MGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             CSCCC-S----SCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             CCCCC-C----cccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            21110 0    0111112222  467777888754                                       478899


Q ss_pred             ECCCCCeeeeEecCc--ceEEEEEeecCCEEEEEeC------CCeEEEEEc--cCCeE--EEEeecCCCCeeEEEEcCCC
Q 004270          502 DFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD------DLVIRLFDV--VALRM--VRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       502 d~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~------d~~i~v~d~--~~~~~--~~~~~~h~~~i~~l~~s~dg  569 (764)
                      |..+.+-...-....  .-...+..-++++++.|+.      ...+.+||+  .+.+-  +..+..........+...++
T Consensus       174 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~  253 (357)
T 2uvk_A          174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND  253 (357)
T ss_dssp             ETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred             eCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence            988775443332221  1102222235666677653      346777877  43322  21221111222222333467


Q ss_pred             cEEEEEeCC----------------------CcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCC
Q 004270          570 KWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ  620 (764)
Q Consensus       570 ~~l~s~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~  620 (764)
                      ++++.|+.+                      ..+.+||+.+.+....-..+.+ ....+...++++++.++.++
T Consensus       254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA  327 (357)
T ss_dssp             EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred             EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence            777777632                      2578899887654433222222 11122234778888888654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.55  E-value=0.91  Score=47.08  Aligned_cols=190  Identities=12%  Similarity=0.158  Sum_probs=117.5

Q ss_pred             cCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC--CCCCEEEEEeC-------CCeE-----
Q 004270          434 ACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGY-------HGDI-----  498 (764)
Q Consensus       434 ~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~-------dg~v-----  498 (764)
                      .||+++++.. .+.+|...++...+.-..+.       ......+.++.+-  |+-.+++.++.       ||..     
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~-------iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~  212 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMIT-------VPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQD  212 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEE-------CTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTS
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEe-------CCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCC
Confidence            4788988887 45688888988776655554       2455667777775  56677777663       2221     


Q ss_pred             -------EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---------------eEEEEEccC-------Ce-
Q 004270          499 -------KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFDVVA-------LR-  548 (764)
Q Consensus       499 -------~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---------------~i~v~d~~~-------~~-  548 (764)
                             ...|..+.+....+........+...+++++.++.+.+.               .+.++++..       |+ 
T Consensus       213 ~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~  292 (638)
T 3sbq_A          213 ENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDF  292 (638)
T ss_dssp             TTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCC
T ss_pred             hhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCe
Confidence                   112333334433333444555566677778777766431               345555321       00 


Q ss_pred             ------EEEEeecC---------------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCcc------c-------eEE
Q 004270          549 ------MVRKFEGH---------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------R-------QID  593 (764)
Q Consensus       549 ------~~~~~~~h---------------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~------~-------~~~  593 (764)
                            -+..+.+.               ......+.++|||++++.++ .+.++.|+|+..-      +       .+.
T Consensus       293 ~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a  372 (638)
T 3sbq_A          293 ITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG  372 (638)
T ss_dssp             BCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred             EEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence                  01122221               12345678999999998776 6789999998842      2       134


Q ss_pred             EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270          594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       594 ~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~  631 (764)
                      ...........+|.++|.-..|--.|+ .|.-|++...
T Consensus       373 e~e~GlGPlHt~Fd~~G~aYTtlfidS-qvvkWni~~a  409 (638)
T 3sbq_A          373 EPELGLGPLHTTFDGRGNAYTTLFIDS-QVVKWNMEEA  409 (638)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTT-EEEEEEHHHH
T ss_pred             eccCCCcccEEEECCCCceEeeeeecc-eEEEEeccHH
Confidence            445555689999999995444555788 5999999764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.50  E-value=0.51  Score=49.01  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=63.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC---CCEEEEEeC-------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGY-------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~-------  494 (764)
                      .....+++.|+|+++++-...+.|.+++..++......................+|+++|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            5678999999999766654445799888765543221110000000013467889999995   444544432       


Q ss_pred             ------CCeEEEEECCCC--Ce-----ee-eEec--CcceEEEEEeecCCEEEEEeC
Q 004270          495 ------HGDIKVWDFKGR--DL-----KS-RWEV--GCSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       495 ------dg~v~iwd~~~~--~~-----~~-~~~~--~~~i~~~~~s~~~~~la~~~~  535 (764)
                            ...|.-+++...  +.     +. .+..  ......++|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235555655432  11     11 1111  145788999999987776543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.86  E-value=1.1  Score=43.03  Aligned_cols=214  Identities=12%  Similarity=0.085  Sum_probs=118.6

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEe
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLF  102 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~  102 (764)
                      +..+.+... ++.+..|-.....++-+.......|..++...+..++...++|+.|-.+.  ++.....-...|..++.-
T Consensus        32 G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G  110 (282)
T 3qhy_B           32 GYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAG  110 (282)
T ss_dssp             CSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGSSSEEEEEEE
T ss_pred             CCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCcccCCCeEEEECc
Confidence            344444445 89999998776443333323345789999888877776777799996432  122211223578889888


Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS  182 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  182 (764)
                      ..+.+... ||.|..|-.........+..    ....+..+  +...  ...+.-. +|.|..|-......+..-..-..
T Consensus       111 ~~hs~al~-~G~v~~wG~n~~gqlg~~~~----~~~~i~~i--~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~  180 (282)
T 3qhy_B          111 AWASYALK-DGKVIAWGDDSDGQTTVPAE----AQSGVTAL--DGGV--YTALAVK-NGGVIAWGDNYFGQTTVPAEAQS  180 (282)
T ss_dssp             TTEEEEEE-TTEEEEEECCTTSTTSCCGG----GGSSEEEE--EECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred             CCEEEEEe-CCeEEEecCCCCCcCCCCcc----CCCCeEEE--Eccc--CEEEEEE-CCEEEEecCCCCCCCCCceecCC
Confidence            88888888 99999997765332111111    01112222  2222  2233334 78888886543211111111134


Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~  257 (764)
                      .|..++..... .++.  .||.|..|-......+.. .......|..++-....  .++..  ||.|..|=....
T Consensus       181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY--SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTCC
T ss_pred             CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE--EEEEE--CCEEEEecCCCC
Confidence            57777666543 3444  589999997553322211 11112356666654332  34433  899999975544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.65  E-value=1.6  Score=41.87  Aligned_cols=219  Identities=13%  Similarity=0.082  Sum_probs=118.5

Q ss_pred             CcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeE
Q 004270           56 PKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHV  133 (764)
Q Consensus        56 ~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~  133 (764)
                      ...|..++......++...+.|+.|-.+.  ++.........|..++.-..+.+... ||.|..|-....-..-.|... 
T Consensus        23 ~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~-  100 (282)
T 3qhy_B           23 QSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEA-  100 (282)
T ss_dssp             SSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGG-
T ss_pred             cCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCccc-
Confidence            45789999888877766677799996432  12222223447888888777766665 999999987654332111110 


Q ss_pred             ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270          134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (764)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~  213 (764)
                         ...+..++...    ...+.-. +|.|+.|-....-.+-........|..++....- .++. . ||.|..|-....
T Consensus       101 ---~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~l-~-~G~v~~wG~n~~  169 (282)
T 3qhy_B          101 ---RSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALAV-K-NGGVIAWGDNYF  169 (282)
T ss_dssp             ---SSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred             ---CCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEEE-E-CCEEEEecCCCC
Confidence               11223333332    2344445 8999999654321111111123456666665443 2332 3 788988876532


Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      ..+. ........|..++-..+.  .++.  .+|.|..|=......+..-. .....|..++..... .++..  ||.+.
T Consensus       170 gqlg-~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~  240 (282)
T 3qhy_B          170 GQTT-VPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWY-SLALK--NGKVI  240 (282)
T ss_dssp             STTS-CCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred             CCCC-CceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence            2221 111113457777654432  3444  48999999755432222111 123457777655443 33333  88898


Q ss_pred             EEE
Q 004270          294 MWI  296 (764)
Q Consensus       294 vw~  296 (764)
                      .|=
T Consensus       241 ~wG  243 (282)
T 3qhy_B          241 AWG  243 (282)
T ss_dssp             EES
T ss_pred             Eec
Confidence            884

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.88  E-value=1.7  Score=48.07  Aligned_cols=184  Identities=13%  Similarity=0.069  Sum_probs=97.0

Q ss_pred             EEEEEccCCCEEEEEecCC------cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC--eEE
Q 004270          428 KACTISACGNFAVLGTAGG------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIK  499 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~g------~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~  499 (764)
                      ..+.+..+++.++.|+.++      .+.+||..+..-...-..  +.....|     +.+.-.++++++.||.++  .+.
T Consensus       444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~  516 (695)
T 2zwa_A          444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--SHTRFRH-----SACSLPDGNVLILGGVTEGPAML  516 (695)
T ss_dssp             EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--SBCCBSC-----EEEECTTSCEEEECCBCSSCSEE
T ss_pred             EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--CCCcccc-----eEEEEcCCEEEEECCCCCCCCEE
Confidence            3344433777888887543      578899887543322110  0000122     223323788888888654  689


Q ss_pred             EEECCCCCeeeeEe---c--C-cceEEEEEeec-CCEEEEEeC--C-----CeEEEEEccCCeE-----EEEeec--CCC
Q 004270          500 VWDFKGRDLKSRWE---V--G-CSLVKIVYHRV-NGLLATVAD--D-----LVIRLFDVVALRM-----VRKFEG--HTD  558 (764)
Q Consensus       500 iwd~~~~~~~~~~~---~--~-~~i~~~~~s~~-~~~la~~~~--d-----~~i~v~d~~~~~~-----~~~~~~--h~~  558 (764)
                      +||..+.+-...-.   .  . ....++.+..+ +++++.|+.  +     ..+.+||+.+.+-     -..+..  ...
T Consensus       517 ~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~  596 (695)
T 2zwa_A          517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ  596 (695)
T ss_dssp             EEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC
T ss_pred             EEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC
Confidence            99988765332221   1  1 22233555544 667777765  2     4689999887761     122211  111


Q ss_pred             Ce-eEEEEcCCCcEEEEEeCC--------CcEEEEEcCccceEEEEeeCCce----------EEEEEcCCCCeEEEEEeC
Q 004270          559 RI-TDFCFSEDGKWLLSSGMD--------GSLRIWDVILARQIDAIHVDVSI----------TALSLSPNMDVLATAHVD  619 (764)
Q Consensus       559 ~i-~~l~~s~dg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~v----------~~l~~sp~g~~lat~~~d  619 (764)
                      +. .+++...++++++.|+.+        ..|.+||+.+++.. ....+...          .+.+..++|++++.||..
T Consensus       597 R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          597 RYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             CBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             cccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence            11 123333347888888743        46999999887654 22221111          334444566777777643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.42  E-value=5.5  Score=43.93  Aligned_cols=196  Identities=10%  Similarity=0.100  Sum_probs=98.6

Q ss_pred             CEEEEEeCC----CcEEEEeCCCCeEEEEE-c-------CCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccCC
Q 004270          152 NKVIVGSQE----GSLQLWNISTKKKLYEF-K-------GWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYD  213 (764)
Q Consensus       152 ~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-------~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~~  213 (764)
                      ..++.|+.+    +.+.+||..+++-...- .       .....-.++.+..++.+++.|+.+      ..+.+||..+.
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            455666543    46888998776533322 1       111122233333277778887754      35788888875


Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC--cEEEEECCCceeeeeeec----ccccCeeEEEEecC-CCEEEEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN-EPVLMSA  286 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~s~  286 (764)
                      +-...-.......-.+++...++. +++.|+.++  .+.+||..+.+-...-..    .....-.++.+..+ +.+++.|
T Consensus       479 ~W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G  557 (695)
T 2zwa_A          479 EWSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG  557 (695)
T ss_dssp             EEEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred             cEEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence            432211111111112233323666 778877544  799999988754332210    11112233555555 5667777


Q ss_pred             cC--C-----CcEEEEEecCCCC----CceeeEeccCCCCCCeeEEEecCCCEEEEEeC--------CCcEEEEEeeccc
Q 004270          287 SA--D-----NSIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--------DRAFRLFSVIQDQ  347 (764)
Q Consensus       287 ~~--d-----~~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--------dg~i~i~d~~~~~  347 (764)
                      |.  +     +.+.+||+.....    .+..+.........-.++....+++.++.||.        ...+.+||+.+..
T Consensus       558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            65  2     3466777665531    02222221111111123334444777777774        3458888877654


Q ss_pred             c
Q 004270          348 Q  348 (764)
Q Consensus       348 ~  348 (764)
                      -
T Consensus       638 W  638 (695)
T 2zwa_A          638 L  638 (695)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=91.79  E-value=9  Score=36.34  Aligned_cols=187  Identities=12%  Similarity=0.037  Sum_probs=111.9

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEC---cCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNL---QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKV  500 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~i  500 (764)
                      ..+..+.......+++.-++.|.++....   ..+.... +        ......|..+.... +...++..+.+|.++.
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--------l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr   94 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--------KSREEKIVGAFIREKFGNRLLLATKKGYVKK   94 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--------SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--------CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence            55666666666677888888998776543   3221111 1        13345666665421 4678999999999999


Q ss_pred             EECCCCC------eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE---------EEEeecCCCCeeEEEE
Q 004270          501 WDFKGRD------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM---------VRKFEGHTDRITDFCF  565 (764)
Q Consensus       501 wd~~~~~------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~---------~~~~~~h~~~i~~l~~  565 (764)
                      ..+..-.      ....+.....+..+........++..+..|.+..++...-..         .-.+.. ...|..+..
T Consensus        95 ~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~  173 (276)
T 3no0_A           95 IPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRI  173 (276)
T ss_dssp             EEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEE
T ss_pred             EEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEE
Confidence            9875432      122233346666666666677899999999999888653221         112322 355666665


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCcc-------ceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270          566 SEDGKWLLSSGMDGSLRIWDVILA-------RQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       566 s~dg~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                      .+++.+|+..+..|.++...+..-       +-+..+.....+..+....+.+.++..+.++.
T Consensus       174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~  236 (276)
T 3no0_A          174 WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK  236 (276)
T ss_dssp             ESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSC
T ss_pred             eCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCe
Confidence            566778888999999999887532       22222222223444433333345555555664

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.67  E-value=24  Score=36.37  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeee----c----ccccCeeEEEEecC----CCEEEEEcC-
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIR----E----AHDNAIISLHFFAN----EPVLMSASA-  288 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~----~----~h~~~v~~l~~~~~----~~~l~s~~~-  288 (764)
                      .....|+|.|||...|+++...|.|++++.....   .+..+.    .    ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4568999999985224445678999999754321   111111    0    11457889999996    333333221 


Q ss_pred             -C----------CcEEEEEecCCC-C-----CceeeEecc--CCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          289 -D----------NSIKMWIFDTTD-G-----DPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       289 -d----------~~i~vw~~~~~~-~-----~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                       +          ..|.-|.+.... .     ..+.+....  .....-..|+|.|||.+.++.+..+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          133335443211 0     112222221  2223457899999998777766544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.53  E-value=24  Score=35.06  Aligned_cols=138  Identities=8%  Similarity=0.037  Sum_probs=86.9

Q ss_pred             eEEEEECCCC--CeeeeEecC-------cceEEEEEe---ec----CCEEEEEe-CCCeEEEEEccCCeEEEEeecC---
Q 004270          497 DIKVWDFKGR--DLKSRWEVG-------CSLVKIVYH---RV----NGLLATVA-DDLVIRLFDVVALRMVRKFEGH---  556 (764)
Q Consensus       497 ~v~iwd~~~~--~~~~~~~~~-------~~i~~~~~s---~~----~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h---  556 (764)
                      .|.+||+.+.  +.++++...       +.+..+++.   +.    +.++..+. ..+.|.|+|+.+++.-+.+..+   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5667888888  887777653       446777777   22    33444443 4678999999998776655210   


Q ss_pred             ---------------CCCeeEEEEcCC----CcEEEEEeCCCcEEEEEcCc-----c---ceEEEEeeC---CceEEEEE
Q 004270          557 ---------------TDRITDFCFSED----GKWLLSSGMDGSLRIWDVIL-----A---RQIDAIHVD---VSITALSL  606 (764)
Q Consensus       557 ---------------~~~i~~l~~s~d----g~~l~s~s~dg~i~iwd~~~-----~---~~~~~~~~~---~~v~~l~~  606 (764)
                                     ...|..|++||+    +++|.-....+ -++|.+++     .   ..+..+...   +.-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                           136888999998    78888776655 35565543     1   222323222   22456677


Q ss_pred             c-CCCCeEEEEEeCCCeEEEEeccc-ccCCCC
Q 004270          607 S-PNMDVLATAHVDQNGVYLWVNRC-MFSGDS  636 (764)
Q Consensus       607 s-p~g~~lat~~~d~~~i~lW~~~~-~~~~~~  636 (764)
                      . .+|.++++- .+...|..|+.+. .|.+..
T Consensus       283 D~~~G~ly~~~-~~~~aI~~w~~~~~~~~~~n  313 (381)
T 3q6k_A          283 DPKTKVIFFAE-ANTKQVSCWNTQKMPLRMKN  313 (381)
T ss_dssp             CTTTCEEEEEE-SSSSEEEEEETTSCSBCGGG
T ss_pred             eCCCCeEEEEe-ccCCeEEEEeCCCCccccCc
Confidence            6 566555444 4444799999987 776544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.49  E-value=22  Score=34.59  Aligned_cols=151  Identities=15%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC--CCC-----
Q 004270          435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--GRD-----  507 (764)
Q Consensus       435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~-----  507 (764)
                      +..+++..+.+|.++...+..-..... .......+.. ...+..+........++..+..|.+..+...  .-.     
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~  185 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA  185 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence            578999999999999988765332211 0000001112 4456555555556678888889998888776  221     


Q ss_pred             ----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-------EEEee--cCCCCeeEEEEcCCCcEEEE
Q 004270          508 ----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VRKFE--GHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       508 ----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-------~~~~~--~h~~~i~~l~~s~dg~~l~s  574 (764)
                          ....+.....|.++...+++..++..+..|.++.-.+.....       +..+.  .-.+.+..+....+...++.
T Consensus       186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l  265 (327)
T 3uc1_A          186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA  265 (327)
T ss_dssp             SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred             CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence                112233346677777777778999999999999888654322       11121  11233444443333445555


Q ss_pred             EeCCCcEEEEEcC
Q 004270          575 SGMDGSLRIWDVI  587 (764)
Q Consensus       575 ~s~dg~i~iwd~~  587 (764)
                      .+.+|.+.-+++.
T Consensus       266 ~T~~G~~ir~~~~  278 (327)
T 3uc1_A          266 VTSGGGVIRTAAR  278 (327)
T ss_dssp             EEGGGCEEEEEGG
T ss_pred             EcCCCeEEEEehh
Confidence            6666766666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.14  E-value=30  Score=35.69  Aligned_cols=29  Identities=7%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             CCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270          315 APPLCIRFYANGR-HILSAGQDRAFRLFSV  343 (764)
Q Consensus       315 ~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~  343 (764)
                      ..+..|+|.|||. .++++...|.|++++.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~   43 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTP   43 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence            4567899999986 5666678898888863

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.43  E-value=43  Score=36.79  Aligned_cols=94  Identities=5%  Similarity=0.025  Sum_probs=55.2

Q ss_pred             cCCcEEEEECcCCcc-------cce-ecCccccccccccCcEEEEEECCCCCEEEEEeCCCe--EEEEECCCCC-eeee-
Q 004270          444 AGGWIERFNLQSGIS-------RGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--IKVWDFKGRD-LKSR-  511 (764)
Q Consensus       444 ~~g~i~i~~~~~~~~-------~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~--v~iwd~~~~~-~~~~-  511 (764)
                      ..+.|...++.++..       ... +.       ......+..+.+..+ .++++...++.  +.++++.+++ .... 
T Consensus       318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~  389 (711)
T 4hvt_A          318 KAGSLVALHFTDLLKTESDKTSLKILFT-------PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVV  389 (711)
T ss_dssp             CTTCEEEEEGGGGGSCGGGCTTCEEEEC-------CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEE
T ss_pred             CCCeEEEEECCcccccccccccceEEEC-------CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEec
Confidence            467788888876421       111 21       133456788888865 57777777765  6677766664 2233 


Q ss_pred             EecC--cceEEEEEeecCCEEEE-EeC---CCeEEEEEcc
Q 004270          512 WEVG--CSLVKIVYHRVNGLLAT-VAD---DLVIRLFDVV  545 (764)
Q Consensus       512 ~~~~--~~i~~~~~s~~~~~la~-~~~---d~~i~v~d~~  545 (764)
                      +...  ..+.....++++..++. .+.   -+.+..+|+.
T Consensus       390 i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          390 LKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             ECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             cCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            3332  45655666666654443 332   3678888876

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.82  E-value=27  Score=33.96  Aligned_cols=190  Identities=14%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEC---cCC------cccceecCccccccccccCcEEEEEECC---CCCEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNL---QSG------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISA  492 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~---~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~  492 (764)
                      ..+..+........++.-++.|.++....   ..+      .++..+.     . ......|.++..-+   +..+++..
T Consensus        42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l-----~-l~~~e~i~~~~~~~~~~~e~~~v~~  115 (327)
T 3uc1_A           42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLL-----A-FQPEERIAQVIQIRGYTDAPYLVLA  115 (327)
T ss_dssp             GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHT-----T-CCTTCCEEEEEEESSTTSSSEEEEE
T ss_pred             CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHcc-----C-CCCCCEEEEEEEeccCCCCCEEEEE
Confidence            45666666777788888889998776653   222      1111111     0 12334555554333   57899999


Q ss_pred             eCCCeEEEEECCCCC-------eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc--CCeE---------EEEee
Q 004270          493 GYHGDIKVWDFKGRD-------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRM---------VRKFE  554 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~-------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~--~~~~---------~~~~~  554 (764)
                      +.+|.++.-.+..-.       ....+.....+..+........++..+..|.+..+...  .-..         .-.+.
T Consensus       116 T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~  195 (327)
T 3uc1_A          116 TRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN  195 (327)
T ss_dssp             ETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC
T ss_pred             cCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC
Confidence            999999998865422       11223334666666666677788999999999888877  3211         11122


Q ss_pred             cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc-------eEEEEee---CCceEEEEEcCCCCeEEEEEeCCC
Q 004270          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-------QIDAIHV---DVSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~---~~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                       ....|.++...+++.+|+.++..|.++.-.+..-.       -+..++.   ...+..+....+.+.++..+.++.
T Consensus       196 -~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~  271 (327)
T 3uc1_A          196 -IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGG  271 (327)
T ss_dssp             -TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGC
T ss_pred             -CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCe
Confidence             23557777666667789999999999988765422       1222222   123444443334445555566664

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=82.44  E-value=37  Score=32.90  Aligned_cols=157  Identities=11%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcC---C------cccceecCccccccccccCcEEEE-EECC--CCCEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGV-ACDS--TNTLMISA  492 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~~~l~s~  492 (764)
                      ..+..+........++..++.|.++.+....   .      .++..+.     . ......|.++ ....  ++.+++.+
T Consensus        39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i-----~-L~~~e~Iv~~~~~~~~~~~~~ll~~  112 (323)
T 1wp5_A           39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII-----P-IDRDEEIIKAIPINDFELNGYFLFV  112 (323)
T ss_dssp             CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS-----C-CCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc-----C-CCCCCEEEEEEEecccCCCceEEEE
Confidence            4555555666677888889999887776532   1      1111110     0 1223345554 3432  25689999


Q ss_pred             eCCCeEEEEECCCCC------eee--eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-------EE--Eeec
Q 004270          493 GYHGDIKVWDFKGRD------LKS--RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VR--KFEG  555 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~------~~~--~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-------~~--~~~~  555 (764)
                      +.+|.++...+..-.      -+.  .+.....+..+........++..+.+|.+..++...-..       ++  .+. 
T Consensus       113 T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-  191 (323)
T 1wp5_A          113 TRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-  191 (323)
T ss_dssp             ETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-
T ss_pred             eCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-
Confidence            999999998874221      111  223335666666666677888899999999888754222       11  122 


Q ss_pred             CCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCc
Q 004270          556 HTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       556 h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~  588 (764)
                      ....|.++..-+++. .|++.+..|..+.-++..
T Consensus       192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            234466665444444 788888889888877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	764
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-05

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.6 bits (236), Expect = 7e-22
 Identities = 37/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           R  R   GH A    + +  + R ++SA QD    ++      +   +  R         
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP--- 421
                 +    +         +    NV                 F+    I+       
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 422 ----------------ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465
                            +   V + +++      V G      + ++++ G+ R ++   
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--- 222

Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV---WDFKGRDLKSRWEVGCSLVKIV 522
                  H  ++  +          +       ++      +     S   + C +  + 
Sbjct: 223 -----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582
           + +   LL    DD    ++D +         GH +R++    ++DG  + +   D  L+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 583 IWD 585
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.3 bits (217), Expect = 2e-19
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 3/156 (1%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
               +         + G+ + S +LW++        F G  S I++    P  +  A G 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 201 SDGKIHV-HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
            D    +       E +     ++   +T+++FS  G+ LL +G      ++W+  K   
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADR 304

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             V+   HDN +  L    +   + + S D+ +K+W
Sbjct: 305 AGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161
                +S   D +  +W  +         GH    +         P+   N    GS + 
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGH----ESDINAICFFPNG--NAFATGSDDA 248

Query: 162 SLQL--WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
           + +L       +   Y        I+S   S +  ++  G  D   +V +    +     
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 220 T-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
             H     V+ L  + DG   +A+G+    + IWN
Sbjct: 309 AGHD--NRVSCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 34/331 (10%), Positives = 85/331 (25%), Gaps = 36/331 (10%)

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +     +G  + I +        ++     DGK+ + +     ++          V   A
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCA 104

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           ++  G  +   G  +         +     V RE   +          +   +  S+ ++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351
                        +     +GH+   + +    + R  +S   D + +L+ V +    + 
Sbjct: 165 TCALWDIE---TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411
            +       A               I F        +     T   D             
Sbjct: 222 FTGHESDINA---------------ICFF------PNGNAFATGSDDAT---CRLFDLRA 257

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             E +          + + + S  G   + G        ++       G           
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------A 309

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
            H+  V  +        + +  +   +K+W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALS 605
           +R  R   GH  +I    +  D + L+S+  DG L IWD     ++ AI +    +   +
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 606 LSPNMDVLATAHVDQNGVYLWVNRCMFS 633
            +P+ + +A   +D       +     +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGN 132

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.7 bits (231), Expect = 2e-21
 Identities = 40/312 (12%), Positives = 97/312 (31%), Gaps = 29/312 (9%)

Query: 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362
            P      SGH +P   + F+     ++SA +D   +++        R L     + +  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN------------- 409
                 + L              +   C       D   + V  + N             
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 410 ---FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG------ 460
               V   + ++    +   V+    +  G      +    +  + + +   +       
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 461 ------SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
                 S+   S  S+ +                ++S      IK+WD            
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 515 GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573
             + V+ +++H     + + ADD  +R++D    R ++    H   +T   F +   +++
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 574 SSGMDGSLRIWD 585
           +  +D ++++W+
Sbjct: 306 TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.2 bits (196), Expect = 6e-17
 Identities = 36/276 (13%), Positives = 93/276 (33%), Gaps = 29/276 (10%)

Query: 85  QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI 144
              T   H+  V  +       L      +M I  +              +         
Sbjct: 51  FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSS 106

Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204
           +      + ++  S++ ++++W + T   +  F G    +     +    ++A   +D  
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-------------------PLLASGAS 245
           + V  V   E         R  V  ++++ +                     P L SG+ 
Sbjct: 167 VRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305
              I +W++        +   HDN +  + F +    ++S + D ++++W  D  +   R
Sbjct: 226 DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVW--DYKNK--R 280

Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
            ++  + H      + F+    ++++   D+  +++
Sbjct: 281 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 75  NHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVK 134
             I+    +   +      ++       G  +LS   D  + +W        +  VGH  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-- 246

Query: 135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD 194
             D +    + H       ++  + + +L++W+   K+ +         ++S        
Sbjct: 247 --DNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 195 VVAVGCSDGKIHV 207
            V  G  D  + V
Sbjct: 303 YVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 548 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
                  GH   +T   F      ++S+  D ++++WD 
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 43/158 (27%)

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY-------- 523
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ +         
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 524 -----------------------------------HRVNGLLATVADDLVIRLFDVVALR 548
                                                    + + + D  I++++V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            V+ F GH + +     ++DG  + S   D ++R+W V
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.4 bits (225), Expect = 3e-20
 Identities = 45/394 (11%), Positives = 105/394 (26%), Gaps = 64/394 (16%)

Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVLMS 285
            L   S   P      ++    ++N    R   V       H + +  + F  +   L +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 286 ASADNSIKMWIFDT--------------TDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
              + + +++                   D +                + F  +G+ + +
Sbjct: 80  GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +DR  R++ +   +    L        +       +    K V       +R  D   
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----KLVSGSGDRTVRIWDLRT 194

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                  + +  V  +                            G +   G+    +  +
Sbjct: 195 GQCSLTLSIEDGVTTVAVS----------------------PGDGKYIAAGSLDRAVRVW 232

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           + ++G      LD    S   H   V  V        ++S      +K+W+ +  + KS 
Sbjct: 233 DSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 512 WEVGCSLVKIVYHRVNG-------------LLATVADDLVIRLFDVVALRMVRKFEGHTD 558
            +   S    V +  +               + + + D  +  +D  +   +   +GH +
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351

Query: 559 RITDFC------FSEDGKWLLSSGMDGSLRIWDV 586
            +             +     +   D   RIW  
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 47/399 (11%), Positives = 104/399 (26%), Gaps = 63/399 (15%)

Query: 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDV 195
            P  +      +   +         L+N +  ++    L++     S +     S   + 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-----------------HSMRGAVTALAFSSDGQP 238
           +A GC +    V+ V     +   +                  S    + ++ FS DG+ 
Sbjct: 77  LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 134

Query: 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
                A+     +  +     + ++     +                 S      + I+D
Sbjct: 135 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
              G        S             +G++I +   DRA R++          L   + +
Sbjct: 192 LRTGQCS--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD-------TAQAYVWRLQNFV 411
               K            V +        RD  +VV+  +D          A         
Sbjct: 250 GTGHK----------DSVYSVVFT----RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
                      +   V +   +    + + G+    +  ++ +SG               
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--------Q 347

Query: 472 AHNGEVVGVAC------DSTNTLMISAGYHGDIKVWDFK 504
            H   V+ VA            +  +       ++W +K
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 40/380 (10%), Positives = 96/380 (25%), Gaps = 68/380 (17%)

Query: 263 IREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319
            R  H   I       +    P  +    ++   ++           L     H++   C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379
           ++F  +G ++ + G ++  +++ V        LS    A +  +             I  
Sbjct: 68  VKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-- 124

Query: 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439
                                + +    +  V+          +     +      G   
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--- 181

Query: 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499
                         ++             +    +G             + +      ++
Sbjct: 182 -----------SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 559
           VWD +   L  R +                                         GH D 
Sbjct: 231 VWDSETGFLVERLDS----------------------------------ENESGTGHKDS 256

Query: 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------------ITALSL 606
           +    F+ DG+ ++S  +D S+++W++  A          S             + +++ 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 607 SPNMDVLATAHVDQNGVYLW 626
           + N + + +   D  GV  W
Sbjct: 317 TQNDEYILSGSKD-RGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG------------WGSSISSCVS 189
           + +   D     V+ GS + S++LWN+       + K                 + S  +
Sbjct: 259 SVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-----PLLASGA 244
           +   + +  G  D  +   + +    L+      R +V ++A ++         + A+G+
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 245 SSGVISIWNLEK 256
                 IW  +K
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 84  HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTP 141
            +  + + H   V  ++    G+ ++S  +D ++ +W  +                + T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 142 TCIMHPDTYL------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVS------ 189
                    +        ++ GS++  +  W+  +   L   +G  +S+ S         
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 190 SPALDVVAVGCSDGKIHVHNVR 211
            P  +V A G  D K  +   +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 18/258 (6%)

Query: 426 AVKACTISACGNFAVLGTAGG----WIERFNLQSGISRGSYLDMSER-----SNYAHNGE 476
            V     S  G +   G         +   +L + +S  S  +         S+ + +  
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +  V        + +      I++WD + R +    +     +  + +  +G        
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 537 LV-IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595
              +R++D+   +            T      DGK++ +  +D ++R+WD      ++ +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 596 HVDV--------SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEI 647
             +         S+ ++  + +   + +  +D++     +       DS   +  + +  
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 648 VSVKMPSVSSVEGCQDEN 665
                  V SV   Q++ 
Sbjct: 304 YIGHKDFVLSVATTQNDE 321

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.8 bits (218), Expect = 2e-19
 Identities = 40/373 (10%), Positives = 103/373 (27%), Gaps = 21/373 (5%)

Query: 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFF 277
           +   +   ++  A++ D    +A   ++  + I+     +   V   + H+  +  + + 
Sbjct: 2   YHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            +   +++   D +  +W         +        +    C+R+  N +        R 
Sbjct: 61  PDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
             +    Q+             R+  L +      +         + R            
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                +  ++    L       C      V     SA G+     +    +   +    +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
           +  +    +                  T + +++AG+     ++ +     K  +     
Sbjct: 235 AVATLASETLPLLA---------VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 285

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW----LL 573
           + K    R         +       +  A         H + ++       GK       
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 574 SSGMDGSLRIWDV 586
           ++GMDG + IWDV
Sbjct: 346 TTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.6 bits (189), Expect = 8e-16
 Identities = 37/363 (10%), Positives = 95/363 (26%), Gaps = 19/363 (5%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328
             I    +  +   +     ++ + ++  + +      +     H+     + +  +   
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388
           I++ G DR   ++++        L    + + AR ++    E K           I   +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448
             N         +     + +     + +               S      +       +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLL----------AAGSCDFKCRIFSAYIKEV 175

Query: 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 508
           E     +              + +  G V GV   +  + +    +   + + D   +  
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568
            +        +  V       L     D    LF   +      F G  D          
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 569 GKWLLSSGMDGSLRIWD-VILARQIDAIHVDVSITALSLSP----NMDVLATAHVDQNGV 623
                   +D              +D++H + S++ +S+            T  +D  G+
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMD-GGM 353

Query: 624 YLW 626
            +W
Sbjct: 354 SIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 46/362 (12%), Positives = 103/362 (28%), Gaps = 31/362 (8%)

Query: 152 NKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209
            ++ +      + ++  S  K  +++E K     ++    +P  + +    +D   +V  
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

Query: 210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREA 266
           ++      T               +  +   A G+ S VISI   E+     +   I++ 
Sbjct: 80  LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP 139

Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
             + ++SL +  N  +L + S D   +++     + + R          P      +   
Sbjct: 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER------PAPTPWGSKMPFGEL 193

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
               S+       +       +   +S       A     K     L        A    
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD-ADKKMAVATLASETLPLLAVTFI 252

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
            +   V   H      + +       G+       + P       ++A   F        
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTARERFQ------- 302

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC----DSTNTLMISAGYHGDIKVWD 502
                NL    S           +  H   V  ++      +  +   + G  G + +WD
Sbjct: 303 -----NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

Query: 503 FK 504
            +
Sbjct: 358 VR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMD 611
             + I+   +++D   +     +  + I++     +   +H     +  +T +  +P+ +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 612 VLATAHVDQNGVYLWVNRCMF 632
            + T   D+N  Y+W  +   
Sbjct: 65  RIVTCGTDRN-AYVWTLKGRT 84

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 15/174 (8%), Positives = 43/174 (24%), Gaps = 9/174 (5%)

Query: 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP 191
             +          +      ++V   S + ++ L +   K  +         + +     
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251
              +VA G  D    +         ++F   +     +       +    +         
Sbjct: 254 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP----VLMSASADNSIKMWIFDTTD 301
                  L S     H N++  +   +          +   D  + +W   + +
Sbjct: 313 SAAAGAGLDS----LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (206), Expect = 5e-18
 Identities = 43/354 (12%), Positives = 95/354 (26%), Gaps = 49/354 (13%)

Query: 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322
           I +A  + I  +    ++ +L+  S D S+ ++ FD    +  LL+    +  P LC  F
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNF 64

Query: 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382
             N    +  G  +   L   +    S +    +                        C 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------------EANLGICR 106

Query: 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442
             +  D   +        +    R     +               K  T+    +  ++G
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
                ++ F L         ++     +                     +   G + V  
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562
           F  +          +                              R+  K       +  
Sbjct: 223 FDDQGDDYNSSKRFAFRCH--------------------------RLNLKDTNLAYPVNS 256

Query: 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 616
             FS   K+L ++G DG +  W++   ++I         + + ++ + ++L  A
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVSIT 602
           +++V+  +   D I+D         LL +  DGSL ++   +  +    + ++     + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 603 ALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
             +   N D+       Q  +         
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 40/331 (12%), Positives = 92/331 (27%), Gaps = 20/331 (6%)

Query: 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLL 240
            IS     P+  ++ +   DG + V+      + V    S+  +  +    F  +    +
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             G   G I   +L        +     N  I       +  L++AS D  I++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 301 DGDPRLLRFRSGH--SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
                 ++  + +             N   ++    +   + F +   +          +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GTIEES 190

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418
               +++      K +   A    + R              +        + +  +    
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478
             P N     +   S    F     + G I  +NLQ+           +  N+A   E  
Sbjct: 251 AYPVN-----SIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDS 296

Query: 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509
            V    ++ ++  A      K      + ++
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 30/336 (8%), Positives = 78/336 (23%), Gaps = 22/336 (6%)

Query: 146 HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK---GWGSSISSCVSSPALDVVAVGCSD 202
            P    + +++ S +GSL ++    + K  +      +   +  C      D+     + 
Sbjct: 20  IPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262
               +              +    +        G   L + +  G+I + +        +
Sbjct: 78  QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 263 IREAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317
             +  ++    +          S        ++ ++ +     + D   +          
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
                         +  D    +            S+R   +  R              I
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
            F            + T   D      W LQ        ++   +         I+   N
Sbjct: 258 EFSP------RHKFLYTAGSD-GIISCWNLQTR----KKIKNFAKFNEDS-VVKIACSDN 305

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L T+    +           +   +    +Y +
Sbjct: 306 ILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV-------- 154
            E      IDG + +  F    ++                   +    +N +        
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265

Query: 155 -IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210
                 +G +  WN+ T+KK+  F    +  S    + + +++ +  SD     +  
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 5e-18
 Identities = 28/359 (7%), Positives = 91/359 (25%), Gaps = 38/359 (10%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289
              ++DGQ          +I       R  + +    H   + ++        + +    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPG--IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K 71

Query: 290 NSIKMW-IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
             +K+W I    +  P                +   +G  ++  G+     ++ +     
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408
             +                              A        +  +    +  +      
Sbjct: 132 RIKAELTS------------------------SAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468
             +  + ++R    +        IS  G     G     +  ++           +  + 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD---------LREGRQL 218

Query: 469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG 528
             +    ++  +    T   +       +++V      D          ++ + +     
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
              +   D ++  +       + +    +  +     S D K++++   D    +++VI
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 45/355 (12%), Positives = 91/355 (25%), Gaps = 36/355 (10%)

Query: 273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
           S H  A+ +   +    D  I   I                H      +      RH+ +
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
            G     +++ +        +SQ     R                           ++  
Sbjct: 69  GG-KGCVKVWDISHPGNKSPVSQLDCLNR--------------------------DNYIR 101

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                 D     +   +   L    L        A    +  AC   A+   +       
Sbjct: 102 SCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +  +      +     R    H      +   +  T + + G    ++ WD +      +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
            +    +  + Y    G    V  +        V      +   H   +    F+  GKW
Sbjct: 221 HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 572 LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            +S+G D  L  W       I       S+ +  +S +   + T   D+    ++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 7/239 (2%)

Query: 59  IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
           IR+     D      G   + +      A   R  A++         +         F  
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

Query: 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS--LQLWNISTKKKLYE 176
              G            +      T         N        G           + +  +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              + S I S    P  + +AVG     + V +V   ++     H     V +L F+  G
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCG 277

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           +    S     +++ W         + +    ++++S     ++  +++ S D    ++
Sbjct: 278 K-WFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV 196
           +    +            +   ++  L  W       +++ K   SS+ SC  S     +
Sbjct: 265 ESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYI 321

Query: 197 AVGCSDGKIHVHNVRY 212
             G  D K  V+ V Y
Sbjct: 322 VTGSGDKKATVYEVIY 337

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 77.5 bits (189), Expect = 7e-16
 Identities = 23/382 (6%), Positives = 76/382 (19%), Gaps = 49/382 (12%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASA 288
            A  +  +  +        + + ++    +             +     +     +  + 
Sbjct: 2   PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 289 DNSIKMWIFD--TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
              I     D         L                  +G+ + +            +  
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               E+        A+ ++                 ++      +  + ++     Y   
Sbjct: 121 PPRLEVFSTADGLEAKPVRT-----------FPMPRQVYLMRAADDGSLYVAGPDIYKMD 169

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
           ++       +           +    +    +     +                      
Sbjct: 170 VKTGKYTVAL-----PLRNWNRKGYSAPDVLYFWPHQSPRHE------------------ 206

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHR 525
                  +                +A         D K G+     +     L       
Sbjct: 207 ------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260

Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
                        +  +D+   ++++             F + G  L   G    L +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 586 VILARQIDAIHV---DVSITAL 604
                ++  I +   D+S T  
Sbjct: 320 PDTLEKVKNIKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 74.4 bits (181), Expect = 8e-15
 Identities = 32/338 (9%), Positives = 79/338 (23%), Gaps = 22/338 (6%)

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249
               + + V      +HV +V  D    +     +        + D +         G I
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64

Query: 250 SIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304
              +L+  +                ++ S     +   + +           +       
Sbjct: 65  YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKR 360
            +     G  A P+         +++ A  D     A      +  +  +      +   
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW---RLQNFVLGEHIL 417
            RK     + L   P  +                   D A A +       +   G+   
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477
           +   +          S       +      + +++L+                   +   
Sbjct: 245 QEFADLTELYFTGLRSPKDPN-QIYGVLNRLAKYDLKQR---------KLIKAANLDHTY 294

Query: 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
             VA D     +   G   D+ V++    +     ++ 
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 14/181 (7%), Positives = 46/181 (25%), Gaps = 5/181 (2%)

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNG 622
                ++++ +    +L + DV       +  +          ++P+       +     
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 623 VYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSF 682
           +Y        +      S   G+   S+   ++S       E  +  +  +         
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVK 120

Query: 683 GLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIWNFECFRSLI 742
                     D +    +        + L        L +     + + +   +   +L 
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180

Query: 743 M 743
           +
Sbjct: 181 L 181

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 44/379 (11%), Positives = 93/379 (24%), Gaps = 39/379 (10%)

Query: 229 ALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287
           A  FS  DG  L+A   S G   I ++       V++      I  +    +  V     
Sbjct: 7   AEDFSPLDGD-LIAF-VSRGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTKVAFIHG 61

Query: 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347
                 + I+D   G                  +F  N  ++ + G DR  +   V  D+
Sbjct: 62  TREGDFLGIYDYRTGKAE---------------KFEENLGNVFAMGVDRNGKFAVVANDR 106

Query: 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407
                      K     + +E  +    +              +  T        +V+ +
Sbjct: 107 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166

Query: 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
           +        +       +   A    A        +        +     +    +    
Sbjct: 167 EG-----RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-NFSFEVVSKP 220

Query: 468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN 527
                  G          +    +  Y  +         ++          ++      +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 528 G--------LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
                          +  V+  +DV      RK     + +TD   S D K ++    DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 580 SLRIWDVILARQIDAIHVD 598
            +  + +        +  D
Sbjct: 337 KIYTFPLEKPEDERTVETD 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 5e-13
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 17/293 (5%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           + +  RS  S    C+++  + + I+S  +D   +++     +  R L+    +    + 
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 365 -KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423
            +           +        E     +  C       +   +      +  +      
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHNGEVVGVAC 482
                       G+ A +       +     SG       + S        NG   G+AC
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 483 DSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541
                 ++ +G     I++WD +        E G   +       N  + + A D  I++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 542 FDVVA---------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           +D+VA            +R    H+ R+    F  D   ++SS  D ++ IWD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217
           S + ++++WN ST + +    G    I+         +V  G SD  I + ++     L 
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACL- 211

Query: 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--------EAHDN 269
                + G    +         + SGA  G I +W+L                    H  
Sbjct: 212 ---RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

Query: 270 AIISLHFFANEPVLMSASADNSIKMW 295
            +  L F  +E  ++S+S D++I +W
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 9e-07
 Identities = 48/295 (16%), Positives = 92/295 (31%), Gaps = 47/295 (15%)

Query: 84  HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGH----------- 132
            ++   S  S  V  L    + I+S   D  + IW    +E      GH           
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 133 ---------------------VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK 171
                                +          ++H       ++  S++ S+ +W++++ 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTAL 230
             +   +      ++       D   V  S D  I V N    E + T      G    +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN----GHKRGI 181

Query: 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 290
           A       L+ SG+S   I +W++E       +R    +  +      +   ++S + D 
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDG 238

Query: 291 SIKMWIFDT-----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            IK+W                LR    HS     ++F  +   I+S+  D    +
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
              I         V+ GS + +++LW+I     L   +G    +           +  G 
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGA 235

Query: 201 SDGKIHVHNVRYDEELVTFTHSM--------RGAVTALAFSSDGQPLLASGASSGVISIW 252
            DGKI V ++    +      ++         G V  L F       + S +    I IW
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

Query: 253 N 253
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           L+ +      +  +   C   D + ++S   D +++IWD 
Sbjct: 5   LQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDK 42

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR 211
            K++ G ++ ++++W+ +T +      G   S+        + +     S  ++   N  
Sbjct: 26  QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 85

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
                +         +                     I++W++      ++ R    +  
Sbjct: 86  EMLNTLIHHCEAVLHLRFNNGMMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRA 139

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
                  ++  ++SAS D +IK+W   T       +R  +GH     C+++    R ++S
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKRGIACLQY--RDRLVVS 193

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRH 356
              D   RL+ +      R L    
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHE 218

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 32/298 (10%), Positives = 80/298 (26%), Gaps = 19/298 (6%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH-------- 356
            + + R GH+     +   A+G+ + SA  +     + +     +R     H        
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 357 ------VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
                 +   +    +K        V +      +       +    D   A     ++ 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            +  H                +S    F  +G     +  + L           +     
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
            +                  S          +F+     S       +  + +   N  L
Sbjct: 183 TSVAFSNN---GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 531 ATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           AT + D  + ++++   +   +     H     +     +   ++S+G D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 31/326 (9%), Positives = 73/326 (22%), Gaps = 37/326 (11%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
             G   +I++  SS     +    ++G I+  ++        F       +T +  +S  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK- 66

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296
             L        +  +         S       ++       + +  +  A+    I ++ 
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                  P          +              +   +     +  V       E++   
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                                                    D ++  +            
Sbjct: 187 ------------------------------FSNNGAFLVATDQSRKVIPYSVANNFELAH 216

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
                 +   V   + S        G+    +  +N+         +        AH   
Sbjct: 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK------GAHAMS 270

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWD 502
            V        T ++SAG   +IK W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334
            +  +   L + S DNS+ +W  +        +  +  H+   +    + N   I+SAGQ
Sbjct: 231 SWSPDNVRLATGSLDNSVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 335 DRAFRLFSV 343
           D   + ++V
Sbjct: 289 DSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 43/329 (13%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 11  GYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALA---SYRD 67
            ++ + + F   R+     V+ S      +++      +         + +     +   
Sbjct: 17  DHVITCLQFCGNRI-----VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 68  YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127
                    +   +    + T   H++ V  + L  + ++S   D  + +W  +      
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------ 125

Query: 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC 187
              G            +        +V+ G+ +  +++W+  T+  L+  +G  + + S 
Sbjct: 126 --TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 183

Query: 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247
                   V  G  D  I V +V     + T T   +   + +    +   +L SG +  
Sbjct: 184 QFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDN---ILVSGNADS 237

Query: 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307
            + IW+++  +    ++  + +         N+  ++++S D ++K+W   T +    L+
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 308 RFRS-GHSAPPLCIRFYANGRHILSAGQD 335
              S G       IR            ++
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 1e-11
 Identities = 34/335 (10%), Positives = 95/335 (28%), Gaps = 12/335 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
           G+ +  +   GH    +       G  I+S   D   +++S +  +  R L        +
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
            +++                          +          ++   +             
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
           +  T      +             G          + +    +     +          +
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541
                  ++S      I+VWD +  +         SL   +  + + +L +   D  +++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKI 241

Query: 542 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           +D+   + ++  +G         C   +  ++++S  DG++++WD+     I  +    S
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 601 ------ITALSLSPNMDVLATAHVD---QNGVYLW 626
                 +  +  S    V A    +   +  + + 
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 49/424 (11%), Positives = 111/424 (26%), Gaps = 91/424 (21%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
           W     K     KG    + +C+     + +  G  D  + V +    + L T      G
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTG 58

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
            V +     +         S        +        I   + +         +E  ++S
Sbjct: 59  GVWSSQMRDNIII------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
            S D ++++W  +T      L                  +GR ++S   D   +++    
Sbjct: 113 GSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166

Query: 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405
           +     L                           +     + D  +VV+  +DT    VW
Sbjct: 167 ETCLHTLQGHT-----------------------NRVYSLQFDGIHVVSGSLDT-SIRVW 202

Query: 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465
            ++      + +     + +      +    N  V G A   ++ +++++G    +    
Sbjct: 203 DVETG----NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525
           ++  +                  +I++   G +K+WD K  +                  
Sbjct: 257 NKHQSAVTC-------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL---------- 299

Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS----L 581
                                     +  G    +     S           +G+    L
Sbjct: 300 --------------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333

Query: 582 RIWD 585
            + D
Sbjct: 334 LVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 76  HIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL 135
            +  V+  + + T + H +  + + L    ++S + D  + IW  K  +           
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL-----QTLQ 254

Query: 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-----GWGSSISSCVSS 190
                 + +       N VI  S +G+++LW++ T + +         G G  +    +S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 191 PALDVVAVGCSDG--KIHVHNVRYDEEL 216
               V AVG  +G  +  +  + +D ++
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLDFDVDM 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 46/375 (12%), Positives = 114/375 (30%), Gaps = 25/375 (6%)

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
           +  +  T    M   +T L F  +    + +GA   +I +++   ++    +   HD  +
Sbjct: 1   FVPQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQL-SGHDGGV 56

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
            +L + A+  +L+S S D ++++W                  +   L I  Y N ++I++
Sbjct: 57  WALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVT 113

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +D    ++ + ++    +  + H          +                        
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
           VV+   D                 ++         +   +      ++ +          
Sbjct: 174 VVSGSYDN---------------TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
                  R   L+  E          +      ++  ++SA   G I+ WD      K  
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 278

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGK 570
           +    +L  I    V+  +     +    ++++ + ++V        D+I    F     
Sbjct: 279 YHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL 337

Query: 571 WLLSSGMDGSLRIWD 585
            + +   DG   +  
Sbjct: 338 -VAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 8e-09
 Identities = 35/362 (9%), Positives = 95/362 (26%), Gaps = 26/362 (7%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           TC+   D Y+   I G+ +  +++++   KK L +  G    + +   +    ++  G +
Sbjct: 17  TCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           D  + V +++       F                    + +G+    + +W L K   +S
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK---ES 129

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            + +  +     L F   E               +   +     ++     ++     + 
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381
                  +          ++   + +         +     +                  
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------MYT 238

Query: 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441
            +        +         A               R    + T + A T     +  ++
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501
             +      +NL+SG    + +            ++  V      TL+ +    G   + 
Sbjct: 299 SGSENQFNIYNLRSGKLVHANIL-------KDADQIWSVNF-KGKTLVAAVEKDGQSFLE 350

Query: 502 DF 503
             
Sbjct: 351 IL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 44/363 (12%), Positives = 110/363 (30%), Gaps = 20/363 (5%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
             H  ++I+      +  +++ + D  I+++  D+ +   + L   SGH      +++ A
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVY--DSINK--KFLLQLSGHDGGVWALKY-A 62

Query: 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384
           +G  ++S   DR  R++ + +   +      +   R   +   +       V       +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTL 120

Query: 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444
                    +   D  + + + L      E+               T+S  GN  V G+ 
Sbjct: 121 HVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504
              +  +++            ++R               ++    I      + ++    
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564
                    +  S   +V    +             +    A    RKF  H   ++   
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAAD-----------GSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY 624
                  +L SG +    I+++   + + A  +  +    S++     L  A       +
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

Query: 625 LWV 627
           L +
Sbjct: 349 LEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                     +F    +++S+  +    D + V  S+ + +++N+R  + +         
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
            + ++ F      L+A+    G   +  L+
Sbjct: 326 QIWSVNFKGKT--LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMD 611
             GH   +   C   +  ++++   D  +R++D I  + +  +   D  + AL  +    
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 65

Query: 612 VLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDV 671
           +L +   D+      + +   +      +       +         V G +D       +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 672 HRTDRVPKDS 681
            +   VP   
Sbjct: 126 PKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H   V+       +  +I+      I+V+D   +    +       V  + +   G+L +
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 533 VADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
            + D  +R++D+       V +    T R  D    ++ K++++   D +L +W +    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631
            +     +     +  +P  +      +  +   +      
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 2e-11
 Identities = 33/323 (10%), Positives = 92/323 (28%), Gaps = 20/323 (6%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF--YANG 326
           N    L +      +      ++    + D     P +++F    S+    ++F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
           +++ S  +     ++    D++S  +     ++         +       I++D    R 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-------ISWDFEGRRL 130

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                                   V G            +    +++   + +V+   G 
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
             +         +          +            +   T+                 +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDS--------GEFVITVGSDRKISCFDGKSGEFLK 242

Query: 507 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF--- 563
            ++   E     +  +    +   ATV  D  IR++DV   + V+K+     ++ +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 564 CFSEDGKWLLSSGMDGSLRIWDV 586
             +     ++S  +DG+L  +++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 7e-10
 Identities = 26/333 (7%), Positives = 71/333 (21%), Gaps = 36/333 (10%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHF--FAN 279
           R   T L++      +      S  +   +    ++  V        + + ++ F     
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD 335
              L S      + +W +        +           + P   I +   GR +   G+ 
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395
           R      +  D  +                                ++            
Sbjct: 137 RDNFGVFISWDSGNSLGEVSG------------------------HSQRINACHLKQSRP 172

Query: 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455
                      +  +                  +       +               +  
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
              +          +       +       +    + G    I+VWD        +W + 
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 516 CSLVKI----VYHRVNGLLATVADDLVIRLFDV 544
              +      V    NG + +++ D  +  +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
            A   +D  I V +V   + +  +T    +     +   + G   + S +  G ++ + L
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 7/71 (9%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS---CVSSPALDVVAVG 199
                     K      + ++++W+++T K + ++      + +    V +     +   
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 200 CSDGKIHVHNV 210
             DG ++ + +
Sbjct: 315 SLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 5e-11
 Identities = 43/322 (13%), Positives = 84/322 (26%), Gaps = 31/322 (9%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283
           RG    L  +  G   +     + V     +       +  E H +         +    
Sbjct: 17  RGTAVVLGNTPAGD-KIQYCNGTSVY-TVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYC 73

Query: 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
            S     ++++W          L       S P   I + +  + I + G+ R       
Sbjct: 74  ASGDVHGNVRIWDTT--QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403
           + D  +   +    A+    +  K          + D                      +
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463
           V                            +  G+        G I  +N   G   G + 
Sbjct: 192 VHS-----------------------VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF- 227

Query: 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523
           +     N AH+G V G+      T + SA     IK+W+     ++    VG  +     
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 524 --HRVNGLLATVADDLVIRLFD 543
                   L +++ +  I   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 8e-10
 Identities = 26/300 (8%), Positives = 70/300 (23%), Gaps = 26/300 (8%)

Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
               S+      +           + HS      +   +G +  S       R++   Q 
Sbjct: 35  CNGTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               + +    +   + +               +   I           H+         
Sbjct: 91  THILKTTIPVFSGPVKDISWD-----------SESKRIAAVGEGRERFGHVFLFDTGTSN 139

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
                    +     +     +  + S     A+        +    +      S     
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 526
           + S +A  G    +   +                      D         S+  + +   
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDG----------TKTGVFEDDSLKNVAHSGSVFGLTWSPD 249

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWD 585
              +A+ + D  I++++V  L++ +     T             + L+S   +G +   +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
           V +        +       V     V +L     +  H+ + T    S  G +  S  + 
Sbjct: 21  VVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 579 GSLRIW 584
           G++RIW
Sbjct: 80  GNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                +    +      S+     SP    +A   +D  I + NV   +   T     R 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
               L      Q  L S +++G I+  N E
Sbjct: 283 EDQQLGIIWTKQ-ALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSL 606
              K   H+  +    +S DG  + S+  D +++IW+V   +    I     +    L +
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 607 SPNMDVLATAHVDQNGVYLW 626
                 L +   +   +   
Sbjct: 290 IWTKQALVSISANGF-INFV 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.5 bits (150), Expect = 6e-11
 Identities = 27/332 (8%), Positives = 75/332 (22%), Gaps = 11/332 (3%)

Query: 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAF 338
           +++ +  + + +   DT       +   +     P+       GR   +           
Sbjct: 4   ILAPARPDKLVVI--DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398
            L +     +    +     K      +  +   L    +    E+   +         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458
                  +         +L    +              +            +       +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           +   L +  +   +                     Y   +   D +  ++  R      +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
                              V+  FD+     +++             S DG  +   G  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300

Query: 579 GSLRIWDVILARQIDAIHV----DVSITALSL 606
           G L  +D     +   + +     +S+ ++ L
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 34/333 (10%), Positives = 84/333 (25%), Gaps = 27/333 (8%)

Query: 194 DVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
           D +       K+ V +          T             +  G+   A+   S  +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 253 NLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT-------D 301
           +L       R+     E    ++       +   L    +   +++  F+         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
            +    R           + +  +G  +   G+D        + D ++  L +    +  
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL------HVMDPEAGTLVEDKPIQSW 175

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
                 + ++            +    +            AY   L    L    +    
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
                V   + +          A   +E F+L+           +             V 
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN---------ASIKRVPLPHSYYSVN 286

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
             +  + +   G  GD+  +D +  + K + ++
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 51/394 (12%), Positives = 108/394 (27%), Gaps = 51/394 (12%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---------SA 315
           +AHD  I S+         +S S D  +K+W     D +    +  S             
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE------- 368
                R       + +         + + ++ +++++    +      +K          
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428
                         +++   +        D + +        +  +  +           
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488
           +  IS  G  A  G   G ++   L +      Y   S+ S   ++  +  V      +L
Sbjct: 189 SVDISERGLIAT-GFNNGTVQISELSTLRPL--YNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548
           +  A              +   R                                  + +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSV-------------------------PTHSSQ 280

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-----VDVSITA 603
                  H+  +    F++ G+ L S+G DG LR WDV    +I  ++     +++    
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 604 LSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637
           L++  + D LA   V          R     D N
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 46/318 (14%), Positives = 85/318 (26%), Gaps = 58/318 (18%)

Query: 92  HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-------DDKFTPTCI 144
           H A +  +       +S   DG + +W  K ++                          I
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG---------------WGSSISSCVS 189
                 L  V   S  G L  + I+ + +  +                  W     +   
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEEL-----------------VTFTHSMRGAVTALAF 232
                 +      G  ++       +                  V    +     T++  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSAS 287
           S  G  L+A+G ++G + I  L   R             + N+I S+ F     +L  A 
Sbjct: 193 SERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 288 ADNSIKM------------WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
             NS                         +       HS+  + + F  +G  + SAG D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 336 RAFRLFSVIQDQQSRELS 353
              R + V   ++   L+
Sbjct: 311 GKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 40/408 (9%), Positives = 103/408 (25%), Gaps = 70/408 (17%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----------- 225
            K   + I S  +            DG + V + +  +       S              
Sbjct: 10  GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHF 276
            + A+   +    L+A+ + SG +  + + +           L  +  +   ++  +L +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 277 FANEP-----VLMSASADNSIKMWIFDTTDGDPRLLRFRS--------------GHSAPP 317
            A+        L++     +  +W F     +   L                    S   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
             +     G  I +   +   ++  +   +       +H            +      ++
Sbjct: 188 TSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
           A         +    +T +       +  L               + + V + + +  G 
Sbjct: 247 AIAHDS----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA---CDSTNTLMISAGY 494
                   G +  +++++     +           H  ++           +   ++   
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTL--------NMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
             D+K      R               +   +N  L  V  D  IR F
Sbjct: 355 VFDVKFLKKGWR-------------SGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--------------ILARQIDAI 595
               + H   I          + +S   DG L++WD                   +    
Sbjct: 7   ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           HVDV       +  + ++AT     + +  +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGD-LLFY 94

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 37/292 (12%), Positives = 79/292 (27%), Gaps = 11/292 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA-KR 360
           G   +L+  SGH+     +        ++S   D     +S     Q        +   +
Sbjct: 1   GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 56

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A++      +  LK           +    +               L         +   
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 421 PENPTAVKACTIS----ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
               +   A ++S    A G           +    +   +        S  S       
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +          L            W F+   + +                  L+AT + D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236

Query: 537 LVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
             I ++ V   +++++    H D + +  +      L+SSG D  ++ W+V+
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                  K+       +   +       D+VA G  D  I +++V+   +++   ++ + 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWN 253
            V  L + +     L S  +   I  WN
Sbjct: 260 GVNNLLWETPST--LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
               ++      +    +           A     +   + A+G+    I I+++++   
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV-ATGSLDTNIFIYSVKRPMK 249

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                 AH + + +L  +     L+S+ AD  IK W
Sbjct: 250 IIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRW 284

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 54/401 (13%), Positives = 100/401 (24%), Gaps = 68/401 (16%)

Query: 227 VTALAFSSDGQPLL----ASGASSGVISIWNLEKRRLQSVIREAHDNAII-----SLHFF 277
               A + D + +     A  A+     + + E  R+  +I        +     S    
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAH 63

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPR-----LLRFRSGHSAPPLCIRFYANGRHILSA 332
           A+      A  + +  + +FD     P          R      P       +G+ +L  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392
               A  +  V  + ++                        + +   DC  I        
Sbjct: 124 QFSPAPAVGVVDLEGKAF----------------------KRMLDVPDCYHIFPTAPDTF 161

Query: 393 VTCHMDTAQAYVWRLQ-NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                D + A V           H     PE+   +     S      V  T  G I + 
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +L SG ++         +  A                 ++     D        R     
Sbjct: 222 DLSSGDAK------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR----- 270

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
                                      + + D      + KFE     I     S+D K 
Sbjct: 271 ----------------DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313

Query: 572 LL--SSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSPN 609
           LL   S  D +L I D     ++ ++  +      ++ +  
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 187 CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL-ASGAS 245
            +     D      +   + V + +  E L  F       + ++  S D +PLL A    
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTG 321

Query: 246 SGVISIWNLEKRRLQSVIRE 265
              + I + E       + +
Sbjct: 322 DKTLYIHDAESGEELRSVNQ 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 30/342 (8%), Positives = 85/342 (24%), Gaps = 43/342 (12%)

Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA---------SGASSG 247
           A   +  +  V +      +        G +     + DG  +            G  + 
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMID---GGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 248 VISIWNLEKRRLQSVIREAHDNAII------SLHFFANEPVLMSASADNSIKMWIFDTTD 301
            + +++       + I        +            +   L+      +  + + D   
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 302 GD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                       +    +AP        +G     A          +   +      +  
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFL 196

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
           +   A   K        + V      +I + D  +     +   +A     +        
Sbjct: 197 INHPAYSQKAG------RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
            +    +    +   +    +     TA  ++   + ++G            + +    E
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMGHE 301

Query: 477 VVGVAC--DSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG 515
           +  +    D    L   +     + + D + G +L+S  ++G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (128), Expect = 4e-08
 Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 15/208 (7%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L + ST +        G ++     S +   + V   DGK+++ ++   
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 214 EELVTFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E        +    R   T+     + +  +A         I + E    + +       
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSI---------KMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                +        + AS              K+ + D TD +  L              
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAERFLHDG 212

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
               + R+ ++A   R   +    ++ +
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGK 240

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           N    T+ D   I L D     +    +     +     S  G++L   G DG + + D+
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 587 ILARQIDAIHVDVS------ITALSLSPNMDVLATAHVDQNGVYLW 626
            +        + +        T+                     + 
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 18/162 (11%)

Query: 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
           D  N   ++    G I + D    ++K+  + G ++           L  +  D  + + 
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 88

Query: 543 DVVALRM-----VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQID--- 593
           D+          ++         T      + K+ +  +       I D           
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 594 ---------AIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
                      H +  + A+  S           +   + L 
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 9/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L +  +KK +      G ++     S +   + V   D +I + ++   
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 214 EELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E             R   ++     + +  +A        +I + E    + ++      
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329
                +        + AS ++   +        +   +   +      L +        +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIV----NVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209

Query: 330 LSAGQDRAFRLFSV 343
              G D + R F  
Sbjct: 210 ADGGWDSSHRYFMT 223

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 32/389 (8%), Positives = 95/389 (24%), Gaps = 47/389 (12%)

Query: 228 TALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
                  D   L + +   +G I++ + + +++  VI      A+      A+   L+  
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI--DTGYAVHISRMSASGRYLLVI 79

Query: 287 SADNSIKMWIFDTTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
             D  I M      +      ++      +           R+ ++         F+++ 
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMD 137

Query: 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405
            +                 +    E ++  +IA         +    +    +T +  + 
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-------EHPEFIVNVKETGKVLLV 190

Query: 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--------GI 457
             ++                        +   + +                        +
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADG---GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            +  +        +   G V   +     ++ +      +   + +K   +      G  
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQGGG 305

Query: 518 LVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD---------RIT 561
            + I  H                     + +FD+  L    +     +         R+ 
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365

Query: 562 DFCFSEDGKWLLSS-----GMDGSLRIWD 585
              +++ G  +  S         +L + D
Sbjct: 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVD 394

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNG------LLATVADDLVIRLFDVVALRMVRKFE 554
           W     +++  W+V          ++N          T+ D   I L D  + ++V+  +
Sbjct: 2   WGMP--EMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL------SP 608
                +     S  G++LL  G D  + + D+          + + I A S+        
Sbjct: 60  TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 609 NMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQ 668
                           +     +           +         P V+++    +     
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 669 PDVHRTDRV 677
            +V  T +V
Sbjct: 179 VNVKETGKV 187

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 30/313 (9%), Positives = 92/313 (29%), Gaps = 15/313 (4%)

Query: 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA 337
            + V +++     I +W  +  +G   L +           +    + R++    + +  
Sbjct: 3   KQTVYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
              + +  D  +   +       +      + + +   V +++   +      + +   +
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                 +    +  +               + C  +   +  ++      +         
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAG 178

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            R      +E+  Y  N        +S+  +      HG+I+         ++  +   +
Sbjct: 179 PRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLS 574
               +      L A      +I +F V     V   EG      +   F     GK+L++
Sbjct: 233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 292

Query: 575 SGMD-GSLRIWDV 586
           +G     + ++++
Sbjct: 293 AGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 36/313 (11%), Positives = 72/313 (23%), Gaps = 17/313 (5%)

Query: 195 VVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
           V        +IHV N+ ++  L +T    + G V  +  S D + L         +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 254 LE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
           +      L      A   ++  +        +   S +                ++    
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           G            N    + A +     LF+V  D          V             +
Sbjct: 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHM 182

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431
              P   +           +V             +  + +           +        
Sbjct: 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242

Query: 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491
                +          I  F++    S  S                 G   D +   +I+
Sbjct: 243 HLYACDR-----TASLITVFSVSEDGSVLSKEGFQPTETQPR-----GFNVDHSGKYLIA 292

Query: 492 AGYHGD-IKVWDF 503
           AG     I V++ 
Sbjct: 293 AGQKSHHISVYEI 305

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 29/316 (9%), Positives = 76/316 (24%), Gaps = 41/316 (12%)

Query: 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260
               I V +V  ++   T              S DG  +  + A S  +SI +     + 
Sbjct: 10  ESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
           + +        +++     +  + + ++     +     T      +         PL +
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT------VAGTVKTGKSPLGL 121

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380
               +G+ +                       +             K     +    +  
Sbjct: 122 ALSPDGKKL--------------------YVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161

Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440
              +        V      + + +  + N V+    +   P         T +   N   
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221

Query: 441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIK 499
                  I+    +              +      +  G+A       + ++  +   + 
Sbjct: 222 YFNTVSMIDTGTNK------------ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVS 269

Query: 500 VWDFKGRDLKSRWEVG 515
           V D     + +   VG
Sbjct: 270 VIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	764
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.07
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.36
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.17
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.98
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.95
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.9
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.9
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.86
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.83
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.41
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.72
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.45
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.93
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	93.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.2
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.75
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.72
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.12
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	87.15

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-40  Score=334.93  Aligned_cols=292  Identities=13%  Similarity=0.215  Sum_probs=256.3

Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc-eeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (764)
                      +.+..+  .|...|.+++|+|++++|++|+ ||.|++||+....... .......+|...|.+++|+|++++|++++.|+
T Consensus        43 ~~~~~~--~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEC--CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            344444  5999999999999999999987 8999999987654332 22334568999999999999999999999999


Q ss_pred             cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (764)
Q Consensus       337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (764)
                      .|++||+........                                                                 
T Consensus       120 ~i~iwd~~~~~~~~~-----------------------------------------------------------------  134 (337)
T d1gxra_         120 TLSIWDLAAPTPRIK-----------------------------------------------------------------  134 (337)
T ss_dssp             EEEEEECCCC--EEE-----------------------------------------------------------------
T ss_pred             ccccccccccccccc-----------------------------------------------------------------
Confidence            999999864321110                                                                 


Q ss_pred             ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (764)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (764)
                       .....+...+..++++|++.++++++.++.+.+|++.++.......        .|...|.+++|++++..+++++.|+
T Consensus       135 -~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         135 -AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             -EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccccccc
Confidence             0011345788999999999999999999999999999988777664        8999999999999999999999999


Q ss_pred             eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (764)
Q Consensus       497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s  576 (764)
                      .+++||+++++.+..+.+...|.+++|+|+++++++++.|+.+++||+.+++.. ....|...|++++|+|+|++|++++
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s  284 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999988875 4567999999999999999999999


Q ss_pred             CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          577 MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       577 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      .||.|++||+.+++.+..+.++..|++++|+|+|++||+++.|+ .|+||++
T Consensus       285 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~-~I~vWdl  335 (337)
T d1gxra_         285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-KATVYEV  335 (337)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-CEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEEE
Confidence            99999999999999999999888999999999999999999999 5999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=333.68  Aligned_cols=287  Identities=15%  Similarity=0.270  Sum_probs=248.5

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce---EEEE-eccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTF-THSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~-~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                      +.++++ .|...|.+++|+|+|++||+|+ ||.|+|||+.++..   +..+ ...|.+.|.+++|+|+++ +|++|+.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSS
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-EEEEeeccc
Confidence            556666 7999999999999999999987 79999999986542   2222 234578999999999999 899999999


Q ss_pred             cEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       248 ~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      .|++||+...  +....+. .|...+..++|+|++.++++++.|+.+++|++...    .......+|...+.+++|+++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccc
Confidence            9999998754  4555555 78999999999999999999999999999998765    566777789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      +..+++++.|+.+++||+.+++.                                                         
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~---------------------------------------------------------  217 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQ---------------------------------------------------------  217 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEE---------------------------------------------------------
T ss_pred             cccccccccccccccccccccee---------------------------------------------------------
Confidence            99999999999998888654321                                                         


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                                                           ...         ..|...|.+++|+|+
T Consensus       218 -----------------------------------------------------~~~---------~~~~~~i~~l~~~~~  235 (337)
T d1gxra_         218 -----------------------------------------------------LQQ---------HDFTSQIFSLGYCPT  235 (337)
T ss_dssp             -----------------------------------------------------EEE---------EECSSCEEEEEECTT
T ss_pred             -----------------------------------------------------ecc---------cccccceEEEEEccc
Confidence                                                                 111         156778999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~  565 (764)
                      ++++++++.|+.+++||+.+++......+...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |.+.|++++|
T Consensus       236 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  314 (337)
T d1gxra_         236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI  314 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred             ccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEE
Confidence            999999999999999999999888777777999999999999999999999999999999999988776 7889999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEEc
Q 004270          566 SEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       566 s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      +||+++|++|+.||+|+|||+
T Consensus       315 s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         315 SVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSCEEEEEETTSCEEEEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.3e-40  Score=330.53  Aligned_cols=315  Identities=20%  Similarity=0.360  Sum_probs=268.5

Q ss_pred             EEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270          165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA  244 (764)
Q Consensus       165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~  244 (764)
                      .|.. .....+++++|.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..+ ...|.+++|+|++. +++++.
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~~~V~~~~~~~~~~-~~~~~~   78 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCS   78 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEE
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-CCcEEEEeeecccc-cccccc
Confidence            3543 33445689999999999999999999999999999999999999999999765 88999999999999 999999


Q ss_pred             CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      .++.+.+|+....+....+. +|...+.++.|+|+++.+++++.|+.+++|++...    .....+.+|...+.+++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECT
T ss_pred             cccccccccccccccccccc-cccccceeeeccCCCceEEeeccCcceeEeecccc----eeeeEEccCCCcceeeeccc
Confidence            99999999999888887777 89999999999999999999999999999998766    56777789999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (764)
Q Consensus       325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (764)
                      ++++|++++.|+.+++|++.+......+.                                                   
T Consensus       154 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---------------------------------------------------  182 (317)
T d1vyhc1         154 DGTLIASCSNDQTVRVWVVATKECKAELR---------------------------------------------------  182 (317)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEEC---------------------------------------------------
T ss_pred             CCCEEEEEeCCCeEEEEeeccceeeEEEe---------------------------------------------------
Confidence            99999999999999999987654332221                                                   


Q ss_pred             EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (764)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  484 (764)
                                       .+...+.+++++|++.....                              .............
T Consensus       183 -----------------~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~  215 (317)
T d1vyhc1         183 -----------------EHRHVVECISWAPESSYSSI------------------------------SEATGSETKKSGK  215 (317)
T ss_dssp             -----------------CCSSCEEEEEECCSCGGGGG------------------------------GGCCSCC------
T ss_pred             -----------------cCCCCceEEEEeecccccee------------------------------eccccceeeeecc
Confidence                             23466777777776432211                              1112222333445


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (764)
Q Consensus       485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l  563 (764)
                      .+..+++++.|+.|++||+.+++++..+..+ ..|.+++++|++++|++|+.||.|++||+.+++++..+.+|.+.|+++
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            6789999999999999999999999888765 889999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEE
Q 004270          564 CFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       564 ~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      +|+|++++|++|+.||+|+|||
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-38  Score=332.78  Aligned_cols=315  Identities=19%  Similarity=0.313  Sum_probs=250.8

Q ss_pred             EEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec--------
Q 004270          154 VIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH--------  221 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~--------  221 (764)
                      .+.+..++.+.+|+....+.    +....+|.+.|+|++|+|+|++||+|+ |+.|+|||+.+++.+..+..        
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            45677888899999765432    233346999999999999999999986 89999999999988777643        


Q ss_pred             ---------cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270          222 ---------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (764)
Q Consensus       222 ---------~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i  292 (764)
                               .+...|++++|+|+|+ +|++|+.||.|++||...++...... +|...|.++.+++++..+++++.++.+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccCCCCCEEEEEECCCCC-cceecccccccccccccccccccccc-cccccccccccccccccccccccceee
Confidence                     2356799999999999 99999999999999999999998887 899999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      ++|+....    ........+ ....++.+.+ ++++|++++.|+.+++|+..+......+...                
T Consensus       188 ~~~d~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~----------------  246 (388)
T d1erja_         188 RIWDLRTG----QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE----------------  246 (388)
T ss_dssp             EEEETTTT----EEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred             eeeecccc----ccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc----------------
Confidence            99988765    344444344 4445555555 8899999999999999997654432221100                


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~  451 (764)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (388)
T d1erja_         247 --------------------------------------------------------------------------------  246 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee------------e-EecCcce
Q 004270          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS------------R-WEVGCSL  518 (764)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------~-~~~~~~i  518 (764)
                             ..        ...+|...|.+++|+|++++|++++.||.|++||+.++....            . ..+...|
T Consensus       247 -------~~--------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  311 (388)
T d1erja_         247 -------NE--------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV  311 (388)
T ss_dssp             -------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred             -------cc--------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence                   00        002677777888888888888888888888888776543221            1 2234789


Q ss_pred             EEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE------cCCCcEEEEEeCCCcEEEEEcC
Q 004270          519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF------SEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       519 ~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~------s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      .+++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|+++++      +|++++||||+.||+|+||+++
T Consensus       312 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999999999999999999999999875      6799999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-38  Score=319.41  Aligned_cols=309  Identities=20%  Similarity=0.337  Sum_probs=266.2

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      .....+.+ |.++|++++|+|+++ +|++|+.||+|+|||+.+++.+..+. +|...|.+++|+|++.++++++.++.+.
T Consensus         8 ~~~~~L~G-H~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           8 PEKYALSG-HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             SCSCEEEC-CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CccEEEcC-CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccccccc
Confidence            34456665 488999999999998 99999999999999999999999998 8999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|+....    .......+|...+.++.++++++.+++++.|+.+++|++.++.....+.                    
T Consensus        85 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------  140 (317)
T d1vyhc1          85 LWDFQGF----ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------------------  140 (317)
T ss_dssp             EEETTSS----CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------
T ss_pred             ccccccc----ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc--------------------
Confidence            9987655    4566677899999999999999999999999999999987654333221                    


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                      .+...+.+++++++++++++++.||.|++|+.
T Consensus       141 ------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1         141 ------------------------------------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             ------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ------------------------------------------------cCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence                                                            34478899999999999999999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  533 (764)
                      .++.....+.        .|...+.+++++|++.........+                     .........+.+++++
T Consensus       173 ~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         173 ATKECKAELR--------EHRHVVECISWAPESSYSSISEATG---------------------SETKKSGKPGPFLLSG  223 (317)
T ss_dssp             TTCCEEEEEC--------CCSSCEEEEEECCSCGGGGGGGCCS---------------------CC-------CCEEEEE
T ss_pred             ccceeeEEEe--------cCCCCceEEEEeeccccceeecccc---------------------ceeeeeccCCceeEec
Confidence            9998887775        8999999999998865433222221                     1223334457899999


Q ss_pred             eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCe
Q 004270          534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDV  612 (764)
Q Consensus       534 ~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~  612 (764)
                      +.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++++..+..|. +|++++|+|++++
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999998765 5999999999999


Q ss_pred             EEEEEeCCCeEEEEe
Q 004270          613 LATAHVDQNGVYLWV  627 (764)
Q Consensus       613 lat~~~d~~~i~lW~  627 (764)
                      ||+++.|+ .|++|+
T Consensus       304 l~s~s~Dg-~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQ-TVKVWE  317 (317)
T ss_dssp             EEEEETTS-EEEEEC
T ss_pred             EEEEeCCC-eEEEeC
Confidence            99999999 699996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-37  Score=313.56  Aligned_cols=282  Identities=16%  Similarity=0.205  Sum_probs=237.8

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (764)
                      .+.+..++++|+|+ .|+.+. ++.|.+||++++.....+. +|...|++++|+|++++|++|+.||+|++|++..... 
T Consensus        17 r~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-   92 (311)
T d1nr0a1          17 RGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-   92 (311)
T ss_dssp             TTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-
T ss_pred             CCCeEEEEEcCCCC-EEEEEe-CCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc-
Confidence            45677899999999 777765 6679999999998888887 8999999999999999999999999999999876543 


Q ss_pred             ceeeEeccCCCCCCeeEEEecCCCEEEEEeCC--CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                       .....+.+|..+|.+++|+|+++++++++.+  +.+++|++.+                                    
T Consensus        93 -~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~------------------------------------  135 (311)
T d1nr0a1          93 -ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT------------------------------------  135 (311)
T ss_dssp             -CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT------------------------------------
T ss_pred             -ccccccccccCcccccccccccccccccccccccccccccccc------------------------------------
Confidence             2334567889999999999999988888754  3456665433                                    


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                                                                                ++....
T Consensus       136 --------------------------------------------------------------------------~~~~~~  141 (311)
T d1nr0a1         136 --------------------------------------------------------------------------GTSNGN  141 (311)
T ss_dssp             --------------------------------------------------------------------------CCBCBC
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      222222


Q ss_pred             ecCccccccccccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeE
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI  539 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i  539 (764)
                      +        .+|...|++++|+|++++ +++|+.||.|++||+++++....+..+ .+|.++.++|+++++++++.|+.|
T Consensus       142 l--------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v  213 (311)
T d1nr0a1         142 L--------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI  213 (311)
T ss_dssp             C--------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             c--------cccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence            2        378899999999999875 788999999999999999988888765 889999999999999999999999


Q ss_pred             EEEEccCCeEEEEee-------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEEEEEcCCC
Q 004270          540 RLFDVVALRMVRKFE-------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNM  610 (764)
Q Consensus       540 ~v~d~~~~~~~~~~~-------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp~g  610 (764)
                      ++||..+++.+..+.       +|.+.|++++|+|++++|++|+.||+|+|||+.+++++..+..+..  ...+.+.+++
T Consensus       214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~  293 (311)
T d1nr0a1         214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  293 (311)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC
Confidence            999999998887764       5889999999999999999999999999999999999999987654  3344455567


Q ss_pred             CeEEEEEeCCCeEEEEecc
Q 004270          611 DVLATAHVDQNGVYLWVNR  629 (764)
Q Consensus       611 ~~lat~~~d~~~i~lW~~~  629 (764)
                      ++|++++.|+ .|++|+.+
T Consensus       294 ~~l~s~s~dG-~i~~wd~d  311 (311)
T d1nr0a1         294 QALVSISANG-FINFVNPE  311 (311)
T ss_dssp             SCEEEEETTC-CEEEEETT
T ss_pred             CEEEEEECCC-EEEEEeCC
Confidence            7899999999 59999963

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-37  Score=309.17  Aligned_cols=286  Identities=16%  Similarity=0.236  Sum_probs=241.7

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE-
Q 004270          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-  217 (764)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-  217 (764)
                      ....++++|++  +.++.++ ++.+.+||+++++..+.+.+|...|++++|+|+|++||+|+.||.|++||+.+++... 
T Consensus        19 ~~~~~a~~~~g--~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          19 TAVVLGNTPAG--DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCCCEECTTS--SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CeEEEEEcCCC--CEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            34566789999  7888875 5679999999999999999999999999999999999999999999999999887543 


Q ss_pred             -EEeccCCCCEEEEEEeeCCCCEEEEEeC--CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE-EEEEcCCCcEE
Q 004270          218 -TFTHSMRGAVTALAFSSDGQPLLASGAS--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIK  293 (764)
Q Consensus       218 -~~~~~~~~~v~~l~fs~d~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d~~i~  293 (764)
                       .+.. |.++|.+++|+|+++ ++++++.  +..+++|++++++....+. +|...|++++|+|++++ +++|+.|+.|+
T Consensus        96 ~~~~~-~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          96 TTIPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             EEEEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccccc-ccCcccccccccccc-cccccccccccccccccccccccccccc-ccccccccccccccceeeecccccccccc
Confidence             3433 478999999999999 7777765  4669999999999988887 89999999999999884 88899999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +||++..    +......+|..+|+++.|+|+++++++++.|+.+++||...+.....+..                   
T Consensus       173 i~d~~~~----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-------------------  229 (311)
T d1nr0a1         173 IFEGPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-------------------  229 (311)
T ss_dssp             EEETTTB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-------------------
T ss_pred             ccccccc----ccccccccccccccccccCccccccccccccccccccccccccccccccc-------------------
Confidence            9998765    67777889999999999999999999999999999999765432221110                   


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (311)
T d1nr0a1         230 --------------------------------------------------------------------------------  229 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc--ceEEEEEeecCCEEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLA  531 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la  531 (764)
                      ..    .        ...+|.+.|++++|+|++++|++|+.||.|++||+++++++.++..+.  ....+.+.+++..|+
T Consensus       230 ~~----~--------~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~  297 (311)
T d1nr0a1         230 DS----L--------KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  297 (311)
T ss_dssp             TT----S--------SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             cc----c--------ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEE
Confidence            00    0        013899999999999999999999999999999999999999887663  234556666788899


Q ss_pred             EEeCCCeEEEEEcc
Q 004270          532 TVADDLVIRLFDVV  545 (764)
Q Consensus       532 ~~~~d~~i~v~d~~  545 (764)
                      +++.||.|++||.+
T Consensus       298 s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         298 SISANGFINFVNPE  311 (311)
T ss_dssp             EEETTCCEEEEETT
T ss_pred             EEECCCEEEEEeCC
Confidence            99999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-36  Score=308.23  Aligned_cols=292  Identities=16%  Similarity=0.349  Sum_probs=253.8

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      +..+++.+ |.+.|++++|+|+++ +|++|+.||.|+|||+.+++.+..+. .|...|.+++|+|++.++++++.|+.++
T Consensus        46 ~~~~tL~G-H~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          46 RTRRTLRG-HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECC-CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeeEEECC-CCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceee
Confidence            34455655 489999999999999 99999999999999999999999998 8999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|+.............+.+|.......... .+..+.....|.....+...........                     
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  180 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTF---------------------  180 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEE---------------------
T ss_pred             cccccccccccccceecccccccccccccc-cccccccccccccccccccccccccccc---------------------
Confidence            999887766666777777887766655554 4456777888888877775433211110                     


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                     ......+....+.+.+.++++|+.++.|++||+
T Consensus       181 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         181 -----------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             -----------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             -----------------------------------------------cccceeEeeeccccccceeEEeecCceEEEEEC
Confidence                                                           023367888899999999999999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL  530 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l  530 (764)
                      .++.....+.        +|...|++++|+|++++|++++.||.|++|++........+...   ..+.+++|+|++++|
T Consensus       214 ~~~~~~~~~~--------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         214 REGMCRQTFT--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             CCCcEEEEEe--------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence            9999888875        89999999999999999999999999999999998887776433   679999999999999


Q ss_pred             EEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ++|+.||.|++||+.+++++..+.+|.++|++++|+||+++|+||+.||+|+|||
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9e-37  Score=316.03  Aligned_cols=305  Identities=15%  Similarity=0.192  Sum_probs=241.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~  258 (764)
                      ..+|+|++|+|++++||+|+.||.|+|||+.+++  .+..+.. |.++|.+++|+|+++ +|++|+.|+.|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCC-EEEEEECCCeEEEEeecccc
Confidence            5789999999999999999999999999998876  4455554 589999999999998 99999999999999998776


Q ss_pred             eeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          259 LQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       259 ~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      ....+. .+|...|.+++|+|+++.|++++.|+++++|+++.............+|...|.+++|+|++++|++++.|++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            543332 3788999999999999999999999999999998876655556667789999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      +++|+..............                                                             
T Consensus       165 v~v~~~~~~~~~~~~~~~~-------------------------------------------------------------  183 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTP-------------------------------------------------------------  183 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBT-------------------------------------------------------------
T ss_pred             EEEEeeccCcccccccccc-------------------------------------------------------------
Confidence            9999986543211110000                                                             


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                                       .+              .....+......        ..|...|.+++|+|++++|++++.|+.
T Consensus       184 -----------------~~--------------~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~s~~~d~~  224 (371)
T d1k8kc_         184 -----------------WG--------------SKMPFGELMFES--------SSSCGWVHGVCFSANGSRVAWVSHDST  224 (371)
T ss_dssp             -----------------TB--------------SCCCTTCEEEEC--------CCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             -----------------cc--------------ccccceeeeeec--------cCccCcEEEEEeecccccccccccCCc
Confidence                             00              000001111111        378899999999999999999999999


Q ss_pred             EEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEcc--CCeEEEE----------------------
Q 004270          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRK----------------------  552 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~--~~~~~~~----------------------  552 (764)
                      |++||+.+++.+..+..+ .+|.+++|+|++++|++|. |+.+++|...  .+.....                      
T Consensus       225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (371)
T d1k8kc_         225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  303 (371)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             ceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEec
Confidence            999999999999888876 7899999999998888765 6666665443  2221100                      


Q ss_pred             -----------------eecCCCCeeEEEEcCCC----cEEEEEeCCCcEEEEEcCc
Q 004270          553 -----------------FEGHTDRITDFCFSEDG----KWLLSSGMDGSLRIWDVIL  588 (764)
Q Consensus       553 -----------------~~~h~~~i~~l~~s~dg----~~l~s~s~dg~i~iwd~~~  588 (764)
                                       ...|.+.|+++++.+.+    ..++|+|.||.|++||+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                             01388899999998754    3689999999999999875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-36  Score=314.11  Aligned_cols=328  Identities=14%  Similarity=0.218  Sum_probs=258.3

Q ss_pred             EEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-------
Q 004270          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-------  178 (764)
Q Consensus       106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  178 (764)
                      .+....++...+|+..........+.....|...+.+++|+|++  ++|++|+ |+.|++||+.+++.+..+.       
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg--~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCC--CEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            44667788999999876654332333333588899999999999  7899886 8999999999999887765       


Q ss_pred             -----------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270          179 -----------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (764)
Q Consensus       179 -----------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg  247 (764)
                                 .|...|.+++|+|++++|++|+.||.|++||...++.+..+..+ ...|.+++|++++. .+++++.++
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~~~~~~~~~  185 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGD-KLVSGSGDR  185 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccc-cccccccccccccc-cccccccce
Confidence                       35667999999999999999999999999999999988888665 78999999999998 899999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeeEEEEe-cCCCEEEEEcCCCcEEEEEecCCCCCce---eeEeccCCCCCCeeEEEe
Q 004270          248 VISIWNLEKRRLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPR---LLRFRSGHSAPPLCIRFY  323 (764)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~~~~~h~~~v~~i~~~  323 (764)
                      .+++||..+........ .+. ...++.+. +++.+|++++.|+.|++|+.........   ......+|...|.+++|+
T Consensus       186 ~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLS-IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             EEEEEETTTTEEEEEEE-CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             eeeeeeccccccccccc-ccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence            99999999988877766 444 44455554 4788999999999999999876532111   112335789999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      |++++|++++.|+.+++||+..............                                              
T Consensus       264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------------  297 (388)
T d1erja_         264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS----------------------------------------------  297 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEEC------------------------------------------------------------
T ss_pred             CCCCEEEEEECCCcEEEEeccCCccccccccccc----------------------------------------------
Confidence            9999999999999999999876544332211000                                              


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE-
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC-  482 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  482 (764)
                                .........|...+.+++++|+|++|++|+.||.|++||+.+++.+..+.        +|.+.|.++++ 
T Consensus       298 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~--------~H~~~V~~~~~~  359 (388)
T d1erja_         298 ----------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVA  359 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEEC
T ss_pred             ----------cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe--------CCCCCEEEEEEe
Confidence                      00001111455889999999999999999999999999999999988875        89999999975 


Q ss_pred             -----CCCCCEEEEEeCCCeEEEEECC
Q 004270          483 -----DSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       483 -----~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                           +|++++|++|+.||+|++|+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                 5688999999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-35  Score=305.08  Aligned_cols=326  Identities=16%  Similarity=0.240  Sum_probs=255.5

Q ss_pred             EEEEcCCCCCe-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          174 LYEFKGWGSSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       174 ~~~~~~h~~~i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      ..+++||...| +|++  +++++||+|+.||+|+|||+.+++.+.++..| .++|++++|+|++  +|++|+.||.|++|
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~l~~s~~~--~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG--ILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEEETTT--EEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECC-CCCEEEEEEcCCC--EEEEEecccccccc
Confidence            45689998876 5555  46789999999999999999999999999875 8899999999864  79999999999999


Q ss_pred             ECCCceeeeeeec-ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc-------------------eeeEeccC
Q 004270          253 NLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-------------------RLLRFRSG  312 (764)
Q Consensus       253 d~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~~~~~  312 (764)
                      +....+....... .+........+.+++..+++++.|+.|++|++.......                   ........
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9999877666552 223345566778899999999999999999987542111                   11111222


Q ss_pred             CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      |...+  ..+.++++.++++..|+.+++||+.+.+.....                                        
T Consensus       160 ~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~----------------------------------------  197 (355)
T d1nexb2         160 HMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL----------------------------------------  197 (355)
T ss_dssp             CSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------
T ss_pred             ccccc--cccccccceeeeecccceeeeeecccccceeee----------------------------------------
Confidence            33333  334557889999999999999998655432221                                        


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                                                  ..+...+.++.++++++++++++.||.|++|+..++.....+.        +
T Consensus       198 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--------~  241 (355)
T d1nexb2         198 ----------------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--------G  241 (355)
T ss_dssp             ----------------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC--------C
T ss_pred             ----------------------------eccccccccccccccceeeecccccceEEeeeccccccccccc--------c
Confidence                                        1234678899999999999999999999999999998888775        8


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE-
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-  551 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~-  551 (764)
                      |...|.++++++  ++|++++.||.|++||+.+.................+++++.++++| .|+.|++||+++++++. 
T Consensus       242 h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         242 HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             cccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            999999999974  68999999999999999988766555444444445567777777666 58899999999999885 


Q ss_pred             EeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      .+.+|.++|++++|+|+ .++++++.||+++||.+
T Consensus       319 ~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         319 NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            57789999999999987 57888899999776643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-35  Score=301.48  Aligned_cols=321  Identities=17%  Similarity=0.237  Sum_probs=255.9

Q ss_pred             EEEecccccce-EEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270           86 VATWSRHSAKV-NLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (764)
Q Consensus        86 ~~~~~~h~~~v-~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~  164 (764)
                      ..+|+||...| +|+.++|++|+||+.||+|+|||+.+++.    +.++..|...+..++|+|++   .|++|+.||.|+
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~----~~~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~   77 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF----LLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEE----EEEEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcE----EEEEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence            45599998875 78999999999999999999999999887    78888899999999999865   799999999999


Q ss_pred             EEeCCCCeEEEEEcCCCC--CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc--------------------
Q 004270          165 LWNISTKKKLYEFKGWGS--SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS--------------------  222 (764)
Q Consensus       165 iwd~~~~~~~~~~~~h~~--~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~--------------------  222 (764)
                      +|+....+.......+..  ......+++++.++++++.|+.|++||+.++.........                    
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            999999988877765443  4455678899999999999999999999876544332211                    


Q ss_pred             --CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270          223 --MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       223 --~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (764)
                        +...+  ..+.+++. +++++..|+.|++||+.+++.+.... ++...+.++.|+|+++.+++++.|+.|++|++...
T Consensus       158 ~~~~~~v--~~~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         158 RGHMASV--RTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             ECCSSCE--EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeccccc--cccccccc-eeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEeeecccc
Confidence              12222  34556677 89999999999999999999888887 88899999999999999999999999999998765


Q ss_pred             CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (764)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (764)
                          ..+..+.+|...|.+++++  +++|++++.||.|++||+.+.......                            
T Consensus       234 ----~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------  279 (355)
T d1nexb2         234 ----ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------------------------  279 (355)
T ss_dssp             ----CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE----------------------------
T ss_pred             ----ccccccccccccccccccc--cceeeeeecccccccccccccceeccc----------------------------
Confidence                5677788999999999986  569999999999999998654321110                            


Q ss_pred             ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE-EEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK-ACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (764)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (764)
                                                                |...+. ...++++++++++| .||.|++||+++++.+
T Consensus       280 ------------------------------------------~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         280 ------------------------------------------HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             ------------------------------------------ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             ------------------------------------------ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence                                                      112222 23566777777666 5899999999999887


Q ss_pred             ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (764)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd  502 (764)
                      ....       .+|...|.+++|+|+ .++++++.||.+++|.
T Consensus       317 ~~~~-------~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         317 HANI-------LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             CSCT-------TTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEe-------cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            5433       489999999999986 5788889999866654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-35  Score=298.17  Aligned_cols=329  Identities=17%  Similarity=0.279  Sum_probs=262.2

Q ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (764)
Q Consensus       166 wd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~  245 (764)
                      |+..+.++...+++|.+.|.+ +++++|++||+|+.||.|+|||+.+++.+.++..| .+.|.+++|+++   +|++|+.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~~~~---~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDN---IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETT---EEEEEET
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-CCCEEEEEeCCC---cccccee
Confidence            555667788899999999865 46778999999999999999999999999988765 889999999874   8999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (764)
                      |+.+++|+........... .+...+......  ...+..+..|+.+.+|+.....    .......+.  .......+.
T Consensus        76 D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~--~~~~~~~~~  146 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ----CLHVLMGHV--AAVRCVQYD  146 (342)
T ss_dssp             TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC----EEEEEECCS--SCEEEEEEC
T ss_pred             cccccccccccccceeccc-ccceeEeeeecc--cccccccccceeEEEeeccccc----ceeeeeccc--ccceeeccc
Confidence            9999999998887766665 555566655544  4578888999999999887652    233222222  233345557


Q ss_pred             CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (764)
Q Consensus       326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (764)
                      ...+++++.|+.+++|+.........+.                                                    
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~----------------------------------------------------  174 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQ----------------------------------------------------  174 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEEC----------------------------------------------------
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEc----------------------------------------------------
Confidence            7789999999999999986554332211                                                    


Q ss_pred             EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (764)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (764)
                                      .+  ......++++++++++|+.||.|++||++.+.....+.        +|...+.++++++ 
T Consensus       175 ----------------~~--~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~--------~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         175 ----------------GH--TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT--------GHQSLTSGMELKD-  227 (342)
T ss_dssp             ----------------CC--SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSCEEEEEEET-
T ss_pred             ----------------Cc--ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec--------ccccceeEEecCC-
Confidence                            12  22334556688999999999999999999998887775        8999999888865 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-----cCCC
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-----GHTD  558 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-----~h~~  558 (764)
                       ++|++++.||.|++||+...+....+...  ......+++++++++++|+.||.|++||++++++++++.     +|.+
T Consensus       228 -~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~  306 (342)
T d2ovrb2         228 -NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  306 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             -CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC
Confidence             59999999999999999998888777643  223334455567899999999999999999999988874     5778


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCc----EEEEEcCc
Q 004270          559 RITDFCFSEDGKWLLSSGMDGS----LRIWDVIL  588 (764)
Q Consensus       559 ~i~~l~~s~dg~~l~s~s~dg~----i~iwd~~~  588 (764)
                      .|++++|+|++.+|++|+.||+    |++||+..
T Consensus       307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            8999999999999999999986    99999863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-35  Score=307.92  Aligned_cols=291  Identities=11%  Similarity=0.144  Sum_probs=219.0

Q ss_pred             CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC
Q 004270          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (764)
Q Consensus       224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~  301 (764)
                      ..+|+|++|+|||+ +||+|+.||.|++||+.+++  .+..+. +|.++|.+++|+|++++|++++.|++|++|+++...
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            47899999999999 99999999999999998775  455666 899999999999999999999999999999997653


Q ss_pred             CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                        ......+.+|...|.+++|+|+++.|++++.|+++++|++..........                            
T Consensus        85 --~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----------------------------  134 (371)
T d1k8kc_          85 --WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------------------  134 (371)
T ss_dssp             --EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------------------
T ss_pred             --cccccccccccccccccccccccccceeecccCcceeeeeeccccccccc----------------------------
Confidence              23445567899999999999999999999999999999986543211100                            


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (764)
                                                          ...                                         
T Consensus       135 ------------------------------------~~~-----------------------------------------  137 (371)
T d1k8kc_         135 ------------------------------------HIK-----------------------------------------  137 (371)
T ss_dssp             ------------------------------------EEC-----------------------------------------
T ss_pred             ------------------------------------ccc-----------------------------------------
Confidence                                                001                                         


Q ss_pred             ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------------CeeeeEe-cCcceEEEE
Q 004270          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------------------DLKSRWE-VGCSLVKIV  522 (764)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~------------------~~~~~~~-~~~~i~~~~  522 (764)
                               ..|...|.+++|+|++++|++++.|+.|++|+....                  +.+.... +...+.+++
T Consensus       138 ---------~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  208 (371)
T d1k8kc_         138 ---------KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  208 (371)
T ss_dssp             ---------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             ---------cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE
Confidence                     134444455555555555555555555555544322                  2222222 236789999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe------
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH------  596 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~------  596 (764)
                      |+|++++|++++.|+.|++||+.+++.+..+.+|..+|++++|+||+++|++|+ |+.+++|..........+.      
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP  287 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC
T ss_pred             eecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCc
Confidence            999999999999999999999999999999999999999999999998887655 7777776543321110000      


Q ss_pred             ------------------------------------eCCceEEEEEcCCC----CeEEEEEeCCCeEEEEecccccCC
Q 004270          597 ------------------------------------VDVSITALSLSPNM----DVLATAHVDQNGVYLWVNRCMFSG  634 (764)
Q Consensus       597 ------------------------------------~~~~v~~l~~sp~g----~~lat~~~d~~~i~lW~~~~~~~~  634 (764)
                                                          +...|+++++++.+    ..++|++.|+ .|++|+++.....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg-~v~iW~~~~~~~~  364 (371)
T d1k8kc_         288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG-GMSIWDVRSLESA  364 (371)
T ss_dssp             --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS-EEEEEEHHHHHHH
T ss_pred             cccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC-eEEEEeCCcChhh
Confidence                                                22358999998754    3589999999 6999999765443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-35  Score=298.94  Aligned_cols=291  Identities=20%  Similarity=0.312  Sum_probs=247.7

Q ss_pred             eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (764)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (764)
                      +..++++ +|.+.|++++|+|++++|++|+.||+|++||+.+.    ..+..+.+|..+|.+++|+|+++++++++.|+.
T Consensus        46 ~~~~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeeEEEC-CCCCCEEEEEECCCCCEEEEEECCCceeeeecccc----eeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            4556677 99999999999999999999999999999998766    677788899999999999999999999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      +++|+............                                                               
T Consensus       121 i~~~~~~~~~~~~~~~~---------------------------------------------------------------  137 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSR---------------------------------------------------------------  137 (340)
T ss_dssp             EEEEESSSSCSCCCEEE---------------------------------------------------------------
T ss_pred             eecccccccccccccce---------------------------------------------------------------
Confidence            99999765432221100                                                               


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                       ....+ ...........+..+.....++....+............        .+...+....+.+.+.++++++.|+.
T Consensus       138 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         138 -ELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             -EECCC-SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             -ecccc-ccccccccccccccccccccccccccccccccccccccc--------ccceeEeeeccccccceeEEeecCce
Confidence             00011 223333444456777888888888888887766655553        67888999999999999999999999


Q ss_pred             EEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee--cCCCCeeEEEEcCCCcEEEE
Q 004270          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~s  574 (764)
                      |++||+.+++++..+..+ ..|.+++|+|++++|++|+.|+.|++||+...+.+..+.  .|...|++++|+|++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE
Confidence            999999999999888765 889999999999999999999999999999998877664  46678999999999999999


Q ss_pred             EeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          575 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      |+.||.|++||+.+++++..+..|. +|++++|+|++.+||+++.|+ .|++|+
T Consensus       288 g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC-EEEEeC
Confidence            9999999999999999999998765 599999999999999999999 599997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-35  Score=292.98  Aligned_cols=291  Identities=13%  Similarity=0.168  Sum_probs=233.9

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~  250 (764)
                      |+..+.+.||.++|++++|+|++++|++|+.||.|++||+.+++.+..+...|...|++++|+|+|.  +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEE
Confidence            6788999999999999999999999999999999999999999999888777789999999999997  45566799999


Q ss_pred             EEECCCceee--eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270          251 IWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (764)
Q Consensus       251 iwd~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (764)
                      +|+.......  ......+...+.+++|+|++..+++++ ++.+++|+..      +.....  ....+.+++|+|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~------~~~~~~--~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG------KLTEVP--ISYNSSCVALSNDKQF  150 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT------EEEEEE--CSSCEEEEEECTTSCE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-cccccccccc------cccccc--cccccccccccccccc
Confidence            9998654321  222235778899999999998777665 5689999742      222222  3446789999999999


Q ss_pred             EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (764)
Q Consensus       329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (764)
                      +++++.|+.+++||+.+........                                                       
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~-------------------------------------------------------  175 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKT-------------------------------------------------------  175 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEE-------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc-------------------------------------------------------
Confidence            9999999999999987543211100                                                       


Q ss_pred             ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (764)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (764)
                                  ..|...|.+++++|+++++++++.+|.|++|++.++.......     ...+|...|++++|+|++++
T Consensus       176 ------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         176 ------------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-----SWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             ------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-----CCCCCSSCEEEEEECTTSSE
T ss_pred             ------------ccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccc
Confidence                        0244789999999999999999999999999998876654332     12478999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeEe---cC-cceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRWE---VG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~~---~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~  545 (764)
                      |++++.||.|++||+.++.......   ++ ..+.++ +++++++|++++.|+.|++||+.
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence            9999999999999999876544432   22 345555 55678899999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-35  Score=294.25  Aligned_cols=289  Identities=16%  Similarity=0.197  Sum_probs=229.6

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      +..+.+ .+|.+.|++++|+|+++ +|++|+.||.|++||+++++....+..+|...|++++|+|++. +++++.|+.++
T Consensus         3 ~~~~~~-~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVR-YGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEE-CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             ccceEc-CCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence            344444 45699999999999999 9999999999999999999988888768999999999999986 55666799999


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      +|+....... ........+...+.+++++++++.+++++ ++.+++|+.......                        
T Consensus        80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~------------------------  133 (299)
T d1nr0a2          80 VVPAGGSGVD-SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV------------------------  133 (299)
T ss_dssp             EECSSSSSSC-TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE------------------------
T ss_pred             EeccCCcccc-ccccccccccccccccccccccccccccc-ccccccccccccccc------------------------
Confidence            9987654221 12222345778889999999998777665 567999984321100                        


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                      .....+.+++++|+++++++|+.+|.|.+||+
T Consensus       134 ------------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~  165 (299)
T d1nr0a2         134 ------------------------------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  165 (299)
T ss_dssp             ------------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             ------------------------------------------------cccccccccccccccccccccccccccccccc
Confidence                                                            01156788999999999999999999999999


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE---e-cCcceEEEEEeecCCE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW---E-VGCSLVKIVYHRVNGL  529 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~-~~~~i~~~~~s~~~~~  529 (764)
                      .++.......       ..|...|++++|+|++++|++++.|+.|++||+.++......   . +..+|++++|+|++++
T Consensus       166 ~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         166 SGASVSEVKT-------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             ETTEEEEEEE-------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8876554332       378999999999999999999999999999999887655433   2 3478999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCeE--EEEeecCC-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270          530 LATVADDLVIRLFDVVALRM--VRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (764)
Q Consensus       530 la~~~~d~~i~v~d~~~~~~--~~~~~~h~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~  587 (764)
                      |++|+.|+.|++||++++..  +.....|. ..|..+.| +++++|++++.|++|++||++
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999987643  33333444 55666654 567899999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-34  Score=289.51  Aligned_cols=327  Identities=15%  Similarity=0.264  Sum_probs=256.8

Q ss_pred             EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  287 (764)
                      |+....+....+.+| .+.|.+ +++++|+ +|++|+.||+|+|||+.+++++..+. +|.+.|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH-~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGH-DDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECS-TTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCc-CCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccce
Confidence            455556677777765 777754 3666788 89999999999999999999999998 99999999999875  899999


Q ss_pred             CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270          288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (764)
Q Consensus       288 ~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  367 (764)
                      .|+.+++|+....    ........+...+.....  ....+..+..|+.+.+|+..+......+..             
T Consensus        75 ~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------  135 (342)
T d2ovrb2          75 TDRTLKVWNAETG----ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMG-------------  135 (342)
T ss_dssp             TTSCEEEEETTTT----EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEEC-------------
T ss_pred             ecccccccccccc----cceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeec-------------
Confidence            9999999987655    333333344444444333  456788899999999999876543322211             


Q ss_pred             hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 004270          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  447 (764)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~  447 (764)
                                                                               .........+....+++++.++.
T Consensus       136 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2         136 ---------------------------------------------------------HVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             ---------------------------------------------------------CSSCEEEEEECSSCEEEEETTSC
T ss_pred             ---------------------------------------------------------ccccceeeccccceeeeecCCCe
Confidence                                                                     11122344556778999999999


Q ss_pred             EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeec
Q 004270          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV  526 (764)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~  526 (764)
                      +++|+.........+.        +|...+..+.+  ++.++++++.||.|++||+..++.+..+..+ ..+.++.  ++
T Consensus       159 i~~~d~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~  226 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQ--------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LK  226 (342)
T ss_dssp             EEEEEGGGTEEEEEEC--------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE--EE
T ss_pred             EEEeecccceeeEEEc--------CcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe--cC
Confidence            9999999888877764        77777766655  5789999999999999999999998888766 5555554  45


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee------
Q 004270          527 NGLLATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------  597 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~------  597 (764)
                      +++|++++.|+.|++||+...+....+.+   |...+.++.++  ++++++|+.||+|++||+.+++++..+..      
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence            78999999999999999999988888876   44556666664  56999999999999999999999988853      


Q ss_pred             CCceEEEEEcCCCCeEEEEEeCCC---eEEEEeccc
Q 004270          598 DVSITALSLSPNMDVLATAHVDQN---GVYLWVNRC  630 (764)
Q Consensus       598 ~~~v~~l~~sp~g~~lat~~~d~~---~i~lW~~~~  630 (764)
                      ...|++++|+|++.+||+++.||.   .|++||++.
T Consensus       305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            234999999999999999998871   399999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-32  Score=274.42  Aligned_cols=290  Identities=12%  Similarity=0.173  Sum_probs=230.3

Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEec--CCCEEEEEeCCCcEEEEEeec
Q 004270          269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQ  345 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~--~~~~l~s~~~dg~i~i~d~~~  345 (764)
                      +.+++++|+|+++.|+.++.+. +.++.++...........+.+|. ..|++++|+|  ++++|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~-~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTE-EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCC-EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            3567899999999999886543 33444454444444556667774 6899999998  678999999999999999987


Q ss_pred             ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (764)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (764)
                      ......+....                                                         ..   ....+..
T Consensus        97 ~~~~~~~~~~~---------------------------------------------------------~~---~~~~~~~  116 (325)
T d1pgua1          97 DKESNSVEVNV---------------------------------------------------------KS---EFQVLAG  116 (325)
T ss_dssp             EGGGTEEEEEE---------------------------------------------------------EE---EEECCSS
T ss_pred             Ccceeeeeccc---------------------------------------------------------cc---ccccccC
Confidence            65443322100                                                         00   0013457


Q ss_pred             CeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE-EEEEeCCCeEEEEE
Q 004270          426 AVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIKVWD  502 (764)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~v~iwd  502 (764)
                      .|.+++|+++|+++++++.  ++.+.+|+..++.....+.        +|...|.+++|+|++.+ +++++.|+.+++||
T Consensus       117 ~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC--------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             cEEEEEECCCCCccceeeccccceEEEEeecccccceeee--------ecccccccccccccccceEEEeeccccccccc
Confidence            8999999999999988765  6689999999988877764        89999999999998865 67899999999999


Q ss_pred             CCCCCeeeeEec----CcceEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc---CCCcEEEE
Q 004270          503 FKGRDLKSRWEV----GCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS---EDGKWLLS  574 (764)
Q Consensus       503 ~~~~~~~~~~~~----~~~i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s---~dg~~l~s  574 (764)
                      ....+.......    ...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|..++..+.|+   |||++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             ccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEE
Confidence            988877666543    367999999997 6889999999999999999999999999999888877776   78999999


Q ss_pred             EeCCCcEEEEEcCccceEEEEeeCCc---eEEEEEcCC-CCeEEEEEeCCCeEEEEec
Q 004270          575 SGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPN-MDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       575 ~s~dg~i~iwd~~~~~~~~~~~~~~~---v~~l~~sp~-g~~lat~~~d~~~i~lW~~  628 (764)
                      ++.|++|+|||+.+++++..+..+..   +..+++.+. +.+|++++.|+ .|++|++
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-CEEEEET
T ss_pred             EeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC-EEEEEEC
Confidence            99999999999999999999876553   444444432 34788999998 5999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-32  Score=274.49  Aligned_cols=285  Identities=18%  Similarity=0.238  Sum_probs=223.0

Q ss_pred             CCeEEEEEcCCCCEEEEEEcCCe-EEEEEccCC--ceEEEEeccCCCCEEEEEEee--CCCCEEEEEeCCCcEEEEECCC
Q 004270          182 SSISSCVSSPALDVVAVGCSDGK-IHVHNVRYD--EELVTFTHSMRGAVTALAFSS--DGQPLLASGASSGVISIWNLEK  256 (764)
Q Consensus       182 ~~i~~~~~sp~~~~la~g~~dg~-i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~  256 (764)
                      ..+++++|+|+++.|++++.+.. |+.|+....  ..+..+..|+...|++++|+|  ++. +|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCC-EEEEEeCCCCEEEeeecC
Confidence            35678999999999999876543 455654433  346677777678899999998  455 899999999999999876


Q ss_pred             ceeeeeee-------cccccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270          257 RRLQSVIR-------EAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (764)
Q Consensus       257 ~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (764)
                      ++....+.       ..|.++|.+++|+++++++++++.  ++.+++|+.+..    ..+..+.+|...|.+++|+|++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG----NSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----CEEEECCSCSSCEEEEEECSSSS
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc----ccceeeeeccccccccccccccc
Confidence            64333222       257889999999999998887764  678999988765    57778889999999999999876


Q ss_pred             E-EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270          328 H-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (764)
Q Consensus       328 ~-l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (764)
                      + +++++.|+.+++|+....+.....                                                      
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~------------------------------------------------------  198 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASD------------------------------------------------------  198 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEE------------------------------------------------------
T ss_pred             ceEEEeecccccccccccccccceec------------------------------------------------------
Confidence            5 678999999999986432211000                                                      


Q ss_pred             ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-
Q 004270          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-  485 (764)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  485 (764)
                                                                           ..        ...|...|.+++|+|+ 
T Consensus       199 -----------------------------------------------------~~--------~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         199 -----------------------------------------------------RT--------HHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             -----------------------------------------------------CS--------SSCTTCCEEEEEECSTT
T ss_pred             -----------------------------------------------------cc--------ccCCCCccEEeeecccc
Confidence                                                                 00        0267888999999996 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe---ecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe-
Q 004270          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH---RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-  560 (764)
Q Consensus       486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s---~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i-  560 (764)
                      +.++++++.||.|++||+++++.+..+..+ .++..+.|+   +++++|++++.|+.|+|||++++++++.+..|...+ 
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  297 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  297 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             ceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence            688999999999999999999999888755 555555555   689999999999999999999999999988776553 


Q ss_pred             -eEEEEcCC-CcEEEEEeCCCcEEEEEc
Q 004270          561 -TDFCFSED-GKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       561 -~~l~~s~d-g~~l~s~s~dg~i~iwd~  586 (764)
                       ..+++.+. +.+|++++.||+|++||+
T Consensus       298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence             34444433 347899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.3e-30  Score=263.90  Aligned_cols=323  Identities=10%  Similarity=0.049  Sum_probs=244.3

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPLLASGASSGVI  249 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~d~~~~l~sg~~dg~i  249 (764)
                      +.++..++|.+.|++++|+|++++||+|+.||+|+|||+.++.....+.  ..|.++|.+++|+|++..+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4566678999999999999999999999999999999998766443332  23588999999999876589999999999


Q ss_pred             EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC--CCCeeEEEecCCC
Q 004270          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS--APPLCIRFYANGR  327 (764)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~~~  327 (764)
                      ++|++..+.........+........+.++...+++++.|+++++||++..............+.  .......+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999988777777644555556667777888999999999999999876654444444444433  3445667788899


Q ss_pred             EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (764)
Q Consensus       328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (764)
                      .+++++.|+.+++|++............                                                    
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~----------------------------------------------------  189 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEE----------------------------------------------------  189 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEE----------------------------------------------------
T ss_pred             ceeeecCCCcEEEEecccCcccceeeee----------------------------------------------------
Confidence            9999999999999998765433221110                                                    


Q ss_pred             cceeecceeecCCCCCCCCeEEE-EEccCCCEEEEEecCCcEEEEECcCCcccceecC-------ccccccccccCcEEE
Q 004270          408 QNFVLGEHILRPCPENPTAVKAC-TISACGNFAVLGTAGGWIERFNLQSGISRGSYLD-------MSERSNYAHNGEVVG  479 (764)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~  479 (764)
                                   ........+. .+..++..+++++.+|.+.+|+............       ........|...|++
T Consensus       190 -------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (342)
T d1yfqa_         190 -------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             -------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             -------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence                         0111333443 3455778999999999999999865543322211       011122467788999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC
Q 004270          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR  559 (764)
Q Consensus       480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~  559 (764)
                      ++|+|++++|++|+.||.|++||+.+++.+..+........++++|+++++++++.|+.+++|....    ..+..|...
T Consensus       257 l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~----~~~~~~~~~  332 (342)
T d1yfqa_         257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASS  332 (342)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC----TTSCCCCCE
T ss_pred             EEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC----CCccCCCCe
Confidence            9999999999999999999999999999998887777788899999999999999998888775432    234456555


Q ss_pred             eeEE
Q 004270          560 ITDF  563 (764)
Q Consensus       560 i~~l  563 (764)
                      |..+
T Consensus       333 i~~~  336 (342)
T d1yfqa_         333 IYII  336 (342)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-30  Score=258.14  Aligned_cols=282  Identities=14%  Similarity=0.163  Sum_probs=218.1

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (764)
Q Consensus       171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~  250 (764)
                      .++++++++|..+|++++|+|    |++|+.||+|++||+.++.      ..|...|.+++|++++  .+++++.|++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~--~~~s~s~D~~v~   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQ--EYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTT--CCEEEETTTEEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCC--eEEEEeeccccc
Confidence            578999999999999999998    9999999999999987543      3457899999999775  478899999999


Q ss_pred             EEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (764)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (764)
                      +|++...+        ....+..+.+.+++..+++++ ++.+.+|+....    ..+.....+ .  ...++++++..++
T Consensus        71 ~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~~~~  134 (287)
T d1pgua2          71 VNGITKHE--------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG----DIIKSVRLN-S--PGSAVSLSQNYVA  134 (287)
T ss_dssp             ETTEEEEE--------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC----CEEEEEECS-S--CEEEEEECSSEEE
T ss_pred             cccccccc--------cccceeeeeeccCCceEEEee-cccceeeeccce----eeeeecccc-c--eeeeeeccCccee
Confidence            99975432        344577888888887666655 556888866544    334443322 2  3456778888888


Q ss_pred             EEeCCC-cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          331 SAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       331 s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      +++.++ .+++|++........                                                          
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~----------------------------------------------------------  156 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFD----------------------------------------------------------  156 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEE----------------------------------------------------------
T ss_pred             eeccccceeeeeeccccceeee----------------------------------------------------------
Confidence            888765 689998754322111                                                          


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (764)
                               ....+...+++++|+|+|++|++|+.+|.|++||+.++.......       .+|...|.+++|+|.+...
T Consensus       157 ---------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         157 ---------LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-------AFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             ---------CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-------CCCSSCEEEEEECCCC---
T ss_pred             ---------eeeccCCceeEEEeccCccccccccccccccceeecccccccccc-------cccccccceeeeccccccc
Confidence                     111344789999999999999999999999999999887654432       4899999999999987643


Q ss_pred             EEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC-CeEEEEeecCCCCeeEEEEcCC
Q 004270          490 ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       490 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~-~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      ...                               .+++.++++|+.|+.|++||+++ .+.+..+.+|.+.|++++|+|+
T Consensus       221 ~~~-------------------------------~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         221 NEE-------------------------------EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ----------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             ccc-------------------------------cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence            332                               34577899999999999999876 5678888999999999999998


Q ss_pred             CcEEEEEeCCCcEEEEEc
Q 004270          569 GKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       569 g~~l~s~s~dg~i~iwd~  586 (764)
                      + .|++++.|++|++|++
T Consensus       270 ~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             T-EEEEEETTSCEEEEEE
T ss_pred             C-EEEEEECCCeEEEEEE
Confidence            7 5889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=263.22  Aligned_cols=338  Identities=10%  Similarity=0.110  Sum_probs=236.0

Q ss_pred             EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee------eeeeecccccCeeEEEEe---c----CCCEEEE
Q 004270          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFF---A----NEPVLMS  285 (764)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~h~~~v~~l~~~---~----~~~~l~s  285 (764)
                      ....|.+.|.++++++  + ++++++.|++|++||..+...      ..... .|...+..+...   +    ++.++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             ESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccceeEeee-eccCCceEeeeEeeeccCCCCCcEEEE
Confidence            3356789999999864  4 899999999999999765432      11111 344443333321   1    2347789


Q ss_pred             EcCCCcEEEEEecCCCCCceeeEe------ccCCCCCCeeEEEecC-----CCEEEEEeCCCcEEEEEeecccccccccc
Q 004270          286 ASADNSIKMWIFDTTDGDPRLLRF------RSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQDQQSRELSQ  354 (764)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~------~~~h~~~v~~i~~~~~-----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  354 (764)
                      ++.||.|++|++............      ...+...+..+++.++     +.++++++.||++++|++...........
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999999998765443222211      1224455677777764     46889999999999999875432111100


Q ss_pred             hhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc
Q 004270          355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA  434 (764)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  434 (764)
                      .                ...+.                         ..+         .........+...+.+++++|
T Consensus       165 ~----------------~~~~~-------------------------~~~---------~~~~~~~~~~~~~~~~v~~s~  194 (393)
T d1sq9a_         165 L----------------NWSPT-------------------------LEL---------QGTVESPMTPSQFATSVDISE  194 (393)
T ss_dssp             T----------------CCCCE-------------------------EEE---------EEEECCSSSSCCCCCEEEECT
T ss_pred             e----------------eeccc-------------------------eec---------ccceecccCCCCcEEEEEECC
Confidence            0                00000                         000         111122223446688999999


Q ss_pred             CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCCeeee
Q 004270          435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSR  511 (764)
Q Consensus       435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~  511 (764)
                      +| ++++|+.||.|++||+.+++....+...  ....+|...|.+++|+|++++|++++.|+   .|++||+.+++.+..
T Consensus       195 dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~  271 (393)
T d1sq9a_         195 RG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS  271 (393)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             CC-EEEEEeCCCcEEEEeecccccccccccc--cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeee
Confidence            98 8899999999999999998877655421  22347999999999999999999999887   499999999988887


Q ss_pred             Ee--------------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee----EEEEcCCCcEEE
Q 004270          512 WE--------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT----DFCFSEDGKWLL  573 (764)
Q Consensus       512 ~~--------------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~----~l~~s~dg~~l~  573 (764)
                      +.              |...|++++|+|++++|++++.|++|+|||+++++++.++++|.+.|.    .++|+|++..++
T Consensus       272 l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             eccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            74              447899999999999999999999999999999999999999998876    488999999887


Q ss_pred             EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      +++   ...+|.++.+...           .......+.|++++.|+ .|++|..
T Consensus       352 ~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~d~-~ir~~~~  391 (393)
T d1sq9a_         352 EPG---VFDVKFLKKGWRS-----------GMGADLNESLCCVCLDR-SIRWFRE  391 (393)
T ss_dssp             SCC---EEEEEEECTTTSB-----------STTCTTSCEEEEEETTT-EEEEEEE
T ss_pred             Ecc---cceEEECccCcee-----------ccccCCCCEEEEEEcCC-eEEEEeC
Confidence            554   2223333322111           00112356688999898 7999973

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-30  Score=266.74  Aligned_cols=293  Identities=17%  Similarity=0.221  Sum_probs=215.0

Q ss_pred             cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCce--eeEeccCCCCCCeeEEEec-------CCCEEEEEeCC
Q 004270          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR--LLRFRSGHSAPPLCIRFYA-------NGRHILSAGQD  335 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~~~~~~~h~~~v~~i~~~~-------~~~~l~s~~~d  335 (764)
                      .+|.+.|.++++++  ++++|++.|++|++|+....+....  .......|...+..+....       ++..+++++.|
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            48999999999864  5899999999999999766543211  1222234554443333221       33567899999


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                      |.+++|++........+....                                                          .
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~----------------------------------------------------------~  110 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEK----------------------------------------------------------L  110 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEE----------------------------------------------------------E
T ss_pred             CcEEEEEccCCCceeeeeccc----------------------------------------------------------c
Confidence            999999987654433221100                                                          0


Q ss_pred             eecCCCCCCCCeEEEEEccC-----CCEEEEEecCCcEEEEECcCCcccceecC----------ccccccccccCcEEEE
Q 004270          416 ILRPCPENPTAVKACTISAC-----GNFAVLGTAGGWIERFNLQSGISRGSYLD----------MSERSNYAHNGEVVGV  480 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~-----g~~l~~g~~~g~i~i~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~l  480 (764)
                      .......+...+..+++.++     ++++++++.||.+.+|++...........          ........+...+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  190 (393)
T d1sq9a_         111 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV  190 (393)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEE
Confidence            00000112244555666554     46889999999999999854322111000          0011123556678999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-------CcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEE
Q 004270          481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMV  550 (764)
Q Consensus       481 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~  550 (764)
                      +|+|++ +|++|+.||+|++||+.+++.+..+..       ..+|.+++|+|++++|++|+.|+   .|++||+++++.+
T Consensus       191 ~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            999997 899999999999999999988776642       37899999999999999999987   4999999999888


Q ss_pred             EEee-------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-e----EEEEEcCCCCe
Q 004270          551 RKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-I----TALSLSPNMDV  612 (764)
Q Consensus       551 ~~~~-------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v----~~l~~sp~g~~  612 (764)
                      ..+.             +|.+.|++++|+|||++|+|++.|++|++||+.+|+++.+++.|.. |    ..++|+|+|..
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence            7764             7999999999999999999999999999999999999999998764 4    46899999999


Q ss_pred             EEEEEe
Q 004270          613 LATAHV  618 (764)
Q Consensus       613 lat~~~  618 (764)
                      +++++.
T Consensus       350 ~~~~~~  355 (393)
T d1sq9a_         350 LAEPGV  355 (393)
T ss_dssp             CSSCCE
T ss_pred             EEEccc
Confidence            876643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-30  Score=263.09  Aligned_cols=297  Identities=13%  Similarity=0.103  Sum_probs=224.9

Q ss_pred             eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCc
Q 004270          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRA  337 (764)
Q Consensus       259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~  337 (764)
                      .+.... +|...|++|+|+|++++|++++.||+|++||++.......+ ....+|..+|.+++|+|+ +.+|++|+.|+.
T Consensus         3 ~v~~~~-~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           3 IVQIEQ-APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEECSS-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-EEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             eEEcCC-CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE-EEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            344444 99999999999999999999999999999999876543333 333479999999999985 568999999999


Q ss_pred             EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (764)
Q Consensus       338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (764)
                      +++|++...........                                                               
T Consensus        81 v~~w~~~~~~~~~~~~~---------------------------------------------------------------   97 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTN---------------------------------------------------------------   97 (342)
T ss_dssp             EEEECSSSSSSEEECBS---------------------------------------------------------------
T ss_pred             eeeeecccccccccccc---------------------------------------------------------------
Confidence            99999876543322211                                                               


Q ss_pred             cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (764)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (764)
                          .+..........+++..+++++.++.+.+||+..+............  ..+........+.+.+..+++++.|+.
T Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          98 ----NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS--NNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             ----CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS--SSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             ----cccccccccccccccccccccccccccceeeccccccceeeeccccc--ccccceeeeeeeeccCCceeeecCCCc
Confidence                12244455667778899999999999999998765554433211110  122234455667778889999999999


Q ss_pred             EEEEECCCCCeeeeEec----CcceEEEEE-eecCCEEEEEeCCCeEEEEEccCCeE---------EE------EeecCC
Q 004270          498 IKVWDFKGRDLKSRWEV----GCSLVKIVY-HRVNGLLATVADDLVIRLFDVVALRM---------VR------KFEGHT  557 (764)
Q Consensus       498 v~iwd~~~~~~~~~~~~----~~~i~~~~~-s~~~~~la~~~~d~~i~v~d~~~~~~---------~~------~~~~h~  557 (764)
                      |++|++...+.......    .....+..+ ..++..+++++.||.+.+|+......         ..      ...+|.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            99999987765443322    244455444 45678999999999999999764321         11      123566


Q ss_pred             CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270          558 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (764)
Q Consensus       558 ~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~  627 (764)
                      ..|++++|+|++++||||+.||.|++||+.+++.+..+..+..+..++|+|+|++||+++.|+ ++++|.
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd-~~~~~~  320 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD-TFKTNA  320 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT-HHHHCS
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC-cEEEee
Confidence            789999999999999999999999999999999999887766777889999999999999998 577775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-28  Score=244.01  Aligned_cols=279  Identities=21%  Similarity=0.315  Sum_probs=209.5

Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i  251 (764)
                      +.++.+..|...|+|++  +++++||+|+.||+|+|||+.+++.+..+..| .+.|++++|  +++ +|++|+.||.|++
T Consensus         6 ~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~v~~--~~~-~l~s~s~D~~i~~   79 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY--DER-VIITGSSDSTVRV   79 (293)
T ss_dssp             CCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC--CSS-EEEEEETTSCEEE
T ss_pred             EEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCEeeeec--ccc-eeecccccccccc
Confidence            34555667888999865  57899999999999999999999999999765 889999988  456 8999999999999


Q ss_pred             EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (764)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (764)
                      |++..+....... .+.  .....+.+....++++..++.+++|+....... ........|...+..+.+.+  ..+++
T Consensus        80 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~~  153 (293)
T d1p22a2          80 WDVNTGEMLNTLI-HHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDD--KYIVS  153 (293)
T ss_dssp             EESSSCCEEEEEC-CCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEET--TEEEE
T ss_pred             ccccccccccccc-ccc--cccccccccccceeecccccceeEeeccccccc-cccccccccccccccceecc--ccccc
Confidence            9999988776665 232  233445566778999999999999998765432 33444556777776666543  46777


Q ss_pred             EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (764)
Q Consensus       332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (764)
                      ++.|+.+++||+.+.+                                                                
T Consensus       154 ~s~d~~i~~~d~~~~~----------------------------------------------------------------  169 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCE----------------------------------------------------------------  169 (293)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------------------------------
T ss_pred             ccCCCceeeecCCCCc----------------------------------------------------------------
Confidence            7778888887764432                                                                


Q ss_pred             ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (764)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (764)
                                                                    ....+        .+|...+..+.++  +..+++
T Consensus       170 ----------------------------------------------~~~~~--------~~~~~~v~~~~~~--~~~l~~  193 (293)
T d1p22a2         170 ----------------------------------------------FVRTL--------NGHKRGIACLQYR--DRLVVS  193 (293)
T ss_dssp             ----------------------------------------------EEEEE--------ECCSSCEEEEEEE--TTEEEE
T ss_pred             ----------------------------------------------EEEEE--------cccccccccccCC--CCeEEE
Confidence                                                          11112        1455556666554  457888


Q ss_pred             EeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC---------CeEEEEeecCCCCeeE
Q 004270          492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------LRMVRKFEGHTDRITD  562 (764)
Q Consensus       492 ~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~---------~~~~~~~~~h~~~i~~  562 (764)
                      ++.||.|++||+.+.+.+.....+.... ..+++++.+|++++.||.|++||+.+         ...+..+.+|.+.|++
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~  272 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  272 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             ecCCCEEEEEecccceeeeeecccceee-eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEE
Confidence            8888888888888877777666553322 24566778888888888888888643         3467889999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEE
Q 004270          563 FCFSEDGKWLLSSGMDGSLRIWD  585 (764)
Q Consensus       563 l~~s~dg~~l~s~s~dg~i~iwd  585 (764)
                      ++|  |+++|+|++.||+|++||
T Consensus       273 v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         273 LQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEE--cCCEEEEEecCCEEEEeC
Confidence            999  467899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=249.34  Aligned_cols=271  Identities=16%  Similarity=0.165  Sum_probs=220.8

Q ss_pred             CeEEEecCCCCcceEEEEEeCCeEEEEEC-CeEEEEecCceEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCC
Q 004270           46 LNLVLVGPQLPKKIRALASYRDYTFAAYG-NHIAVVKRAHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGI  123 (764)
Q Consensus        46 ~~~~~~~~~~~~~I~~~~~~~~~~~~a~g-~~i~vw~~~~~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~  123 (764)
                      .+++.++.+|.++|++|+++|  .+.++. +.|++|+..+.   ..+|...|.++.+ .+..+++++.|+++++|++...
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~---~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM---HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE---ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC---CCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            467888899999999999998  333332 23999997653   4789999999997 5778999999999999998654


Q ss_pred             cccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC
Q 004270          124 EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG  203 (764)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg  203 (764)
                      +..           .....+.+++++   .+++.+.++.+.+|+..+++.+..+..+. .  +.+++++++.+++++.++
T Consensus        78 ~~~-----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          78 EFG-----------SQPKVASANNDG---FTAVLTNDDDLLILQSFTGDIIKSVRLNS-P--GSAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             ECS-----------SCEEEEEECSSS---EEEEEETTSEEEEEETTTCCEEEEEECSS-C--EEEEEECSSEEEEEETTT
T ss_pred             ccc-----------cceeeeeeccCC---ceEEEeecccceeeeccceeeeeeccccc-e--eeeeeccCcceeeecccc
Confidence            431           112345567766   45555677789999999999998887643 3  345677888899888875


Q ss_pred             -eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC---
Q 004270          204 -KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---  279 (764)
Q Consensus       204 -~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~---  279 (764)
                       .+++|++...+....+...+.+.+++++|+|++. +|++|+.||.|++||+.+++.......+|...|.+++|+|+   
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccc
Confidence             6999999877777777766788999999999999 99999999999999999998776655589999999999874   


Q ss_pred             -------CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          280 -------EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       280 -------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                             +.++++|+.|++|++|+++...   ..+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCC---eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                   4689999999999999986542   5677778999999999999986 6899999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=7.1e-29  Score=260.06  Aligned_cols=367  Identities=8%  Similarity=-0.023  Sum_probs=266.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce--EEEEec--cCCCCEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTH--SMRGAVT  228 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~--~~~~~v~  228 (764)
                      .+++.+.+|+|.+||..+++++..+..+ ..+..++|||||+++++++.||.|.+||+.+++.  ...+..  .+.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            3588999999999999999999999886 4699999999999999999999999999998774  333332  2245566


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec----------ccccCeeEEEEecCCCEE-EEEcCCCcEEEEEe
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----------AHDNAIISLHFFANEPVL-MSASADNSIKMWIF  297 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~  297 (764)
                      +.+|+|||++++++++.++.|++||..+++++..+..          .+......+.++|+++.+ ++...++.|.+|+.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            6778899995668888999999999999988877651          234456678899998865 55667889999986


Q ss_pred             cCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (764)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (764)
                      .....  ..+..+ .+...+..++|+|+|+++++++. ++.+.+++..+......+..+.                    
T Consensus       193 ~~~~~--~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~--------------------  249 (432)
T d1qksa2         193 TDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG--------------------  249 (432)
T ss_dssp             TCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------------------
T ss_pred             cCCCc--ceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc--------------------
Confidence            54421  122222 45567889999999998887775 4567778876544332221110                    


Q ss_pred             eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcC
Q 004270          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS  455 (764)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~  455 (764)
                                                                 ...+............+....... .++.+.+|+...
T Consensus       250 -------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         250 -------------------------------------------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             -------------------------------------------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------------------------------------cccccCcccceecCCCCceecccccCCceEEeccccc
Confidence                                                       001123333344444444444433 367888887655


Q ss_pred             CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC
Q 004270          456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~  535 (764)
                      ...            ..|...+....+++++..+++++.+...++|+..+....     ......+++ ||++.+++++.
T Consensus       287 ~~~------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-----~~~~~sv~v-pDg~~la~~s~  348 (432)
T d1qksa2         287 EGH------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-----AEISGSVAV-FDIKAMTGDGS  348 (432)
T ss_dssp             TTC------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-----HHHHTCEEE-EEGGGCCCSSS
T ss_pred             ccc------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC-----CCeeeEEEE-Eechhhccccc
Confidence            432            267778999999999999999999999999986654321     112233444 99999999999


Q ss_pred             CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-----CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCC
Q 004270          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-----MDGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g  610 (764)
                      |+.+++|++.++.   .+..|..+|.+++|||||++|+.+.     .+|.|+|||..++++.+.++...     .++|+|
T Consensus       349 d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~-----~~tp~G  420 (432)
T d1qksa2         349 DPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER-----LVTPTG  420 (432)
T ss_dssp             CCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEE
T ss_pred             CCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC-----ccCCCe
Confidence            9999999987663   2345778899999999999886553     47899999999999988887643     224555


Q ss_pred             Ce
Q 004270          611 DV  612 (764)
Q Consensus       611 ~~  612 (764)
                      .|
T Consensus       421 ~~  422 (432)
T d1qksa2         421 KF  422 (432)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.6e-30  Score=263.67  Aligned_cols=332  Identities=12%  Similarity=0.086  Sum_probs=228.6

Q ss_pred             EEEeC-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC--eEEEEEccCCceEEEE
Q 004270          143 CIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG--KIHVHNVRYDEELVTF  219 (764)
Q Consensus       143 ~~~~p-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg--~i~iwd~~~~~~~~~~  219 (764)
                      .-|+| ++  +++++++ .|.|++||+++++.++.  +|...|.+++|+|||++|++++.+.  .|++||+.+++... +
T Consensus         8 ~~fSP~dG--~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~   81 (360)
T d1k32a3           8 EDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F   81 (360)
T ss_dssp             EEEEECGG--GCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred             ccccCCCC--CEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e
Confidence            45899 88  6777775 57899999988877663  6899999999999999998877653  79999998876553 4


Q ss_pred             eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CC
Q 004270          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------AD  289 (764)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d  289 (764)
                      .. +...|.+++|+|||+ +|++++.++.+++|++.+++....+. .|...+.+++|+|+|++|+.++          .+
T Consensus        82 ~~-~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          82 EE-NLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CC-CCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eC-CCceEEeeeeccccc-ccceeccccccccccccccceeeeee-cccccccchhhccceeeeeeeccccccceeeccc
Confidence            33 478899999999999 99999999999999999999888887 8899999999999999998653          34


Q ss_pred             CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (764)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (764)
                      +.+++|+....     .......|...+..++|+|||++|++++.++.+++|+............               
T Consensus       159 ~~~~v~d~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~---------------  218 (360)
T d1k32a3         159 QAIHVYDMEGR-----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS---------------  218 (360)
T ss_dssp             EEEEEEETTTT-----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB---------------
T ss_pred             cceeeeccccC-----ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecccc---------------
Confidence            56889987654     2333446777888999999999999999999999998643221100000               


Q ss_pred             hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (764)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~  449 (764)
                                                     .+....               .+......+.+++++..++.+..+..  
T Consensus       219 -------------------------------~~~~~~---------------~~~~~~~~~~~s~~~~~~~~~~~~~~--  250 (360)
T d1k32a3         219 -------------------------------KPFVIP---------------LIPGSPNPTKLVPRSMTSEAGEYDLN--  250 (360)
T ss_dssp             -------------------------------EEEEEE---------------SSTTCCCGGGCCCGGGSCCCCCCCCT--
T ss_pred             -------------------------------ceEEEe---------------cccCccccceECCCcCcccccceeec--
Confidence                                           000000               00011112223333322221111100  


Q ss_pred             EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEe---ec
Q 004270          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH---RV  526 (764)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s---~~  526 (764)
                                            ....                     .+..++...+...........+..+.+.   ++
T Consensus       251 ----------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (360)
T d1k32a3         251 ----------------------DMYK---------------------RSSPINVDPGDYRMIIPLESSILIYSVPVHGEF  287 (360)
T ss_dssp             ----------------------TGGG---------------------GCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred             ----------------------cccc---------------------ceeecccCcCceeEeeecCCCceEEEEEecCCC
Confidence                                  0000                     1111111222222111222222233333   23


Q ss_pred             CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC
Q 004270          527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       527 ~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  598 (764)
                      +.+++.++.++.+++||+.+++..    .|.+.|.+++|||||++|++++.||.|++||+++++...++..+
T Consensus       288 ~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         288 AAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             HHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             eeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            446778888999999999987653    34456999999999999999999999999999999887776543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-27  Score=233.01  Aligned_cols=274  Identities=16%  Similarity=0.258  Sum_probs=219.4

Q ss_pred             EEEecCCCCcceEEEEEeCCeEEEEEC---CeEEEEec--CceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccC
Q 004270           48 LVLVGPQLPKKIRALASYRDYTFAAYG---NHIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG  122 (764)
Q Consensus        48 ~~~~~~~~~~~I~~~~~~~~~~~~a~g---~~i~vw~~--~~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~  122 (764)
                      .+.....|...|+|+++++  .++++|   +.|++||.  ++.+.++.+|.+.|.++++++++|++++.||.|++|++..
T Consensus         7 ~i~~~~~~~~~V~c~~~d~--~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CEECCCSSCCCEEEEECCS--SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EEeccCCCCCCEEEEEEcC--CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence            3444567888999987654  445443   33999985  5667889999999999999999999999999999999988


Q ss_pred             CcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 004270          123 IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVG  199 (764)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~h~~~i~~~~~sp~~~~la~g  199 (764)
                      +..    .....  ..........+..  ..++++..++.+.+|+..+..   ....+..|...|.++.+.+  ..++++
T Consensus        85 ~~~----~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~  154 (293)
T d1p22a2          85 GEM----LNTLI--HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA  154 (293)
T ss_dssp             CCE----EEEEC--CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred             ccc----ccccc--ccccccccccccc--cceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence            876    22222  2222333444555  579999999999999987654   4556778889998888776  468899


Q ss_pred             EcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270          200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (764)
Q Consensus       200 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~  279 (764)
                      +.|+.|++||+.+++.+..+..+ ...+..+.++  +. .+++++.||.|++||+++.+.+.... +|...+..  +.++
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~--~~~~  227 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRC--IRFD  227 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE--EECC
T ss_pred             cCCCceeeecCCCCcEEEEEccc-ccccccccCC--CC-eEEEecCCCEEEEEecccceeeeeec-ccceeeee--cccc
Confidence            99999999999999999988765 6778888776  34 79999999999999999999988887 78877765  5667


Q ss_pred             CCEEEEEcCCCcEEEEEecCCC-----CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270          280 EPVLMSASADNSIKMWIFDTTD-----GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      +.+|++++.||.|++|++....     .....+..+.+|...|++++|  ++++|++++.||+|++||
T Consensus       228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            8899999999999999986432     123456778899999999998  467899999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=8.8e-28  Score=252.67  Aligned_cols=355  Identities=10%  Similarity=-0.015  Sum_probs=238.3

Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--c-
Q 004270          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--H-  221 (764)
Q Consensus       145 ~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~-  221 (764)
                      +.++.....+++.+.||+|++||+.+++.+.++..|. .+..++|||||++|++++.||.|++||+.+++......  . 
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            3344321345778889999999999999999999864 68999999999999999999999999999988554332  2 


Q ss_pred             -cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecC
Q 004270          222 -SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDT  299 (764)
Q Consensus       222 -~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~  299 (764)
                       .+.+.+.+++|+|||+++++++..++.+.+||..++.+...+. .|...+....+.+++. ..+..+.|+...++....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence             2244567778889999555666789999999999999888887 7777777777777765 334455555544443211


Q ss_pred             CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (764)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (764)
                      .                                   +.+.+++..........                           
T Consensus       184 ~-----------------------------------~~i~~~~~~~~~~~~~~---------------------------  201 (426)
T d1hzua2         184 T-----------------------------------GKVLLVNYKDIDNLTVT---------------------------  201 (426)
T ss_dssp             T-----------------------------------TEEEEEECSSSSSCEEE---------------------------
T ss_pred             C-----------------------------------CeEEEEEeccccceeeE---------------------------
Confidence            1                                   11111111100000000                           


Q ss_pred             eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcc
Q 004270          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGIS  458 (764)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~  458 (764)
                                                              ...+...+..+.++|+|++++++..+ ..+.+++..++..
T Consensus       202 ----------------------------------------~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~  241 (426)
T d1hzua2         202 ----------------------------------------SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL  241 (426)
T ss_dssp             ----------------------------------------EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE
T ss_pred             ----------------------------------------EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccE
Confidence                                                    00112456667777777777666544 4677777777776


Q ss_pred             cceecCccccccccccCcEEEEEECCCCC--EE-EEEeCCCeEEEEECCC-------CCeeeeEecC-cceEEEEEeecC
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNT--LM-ISAGYHGDIKVWDFKG-------RDLKSRWEVG-CSLVKIVYHRVN  527 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l-~s~~~dg~v~iwd~~~-------~~~~~~~~~~-~~i~~~~~s~~~  527 (764)
                      .......      .+........+...+.  .. ++.+.|+.+.+|+...       .+....+..+ ..+..++|+|++
T Consensus       242 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg  315 (426)
T d1hzua2         242 SALVDVG------KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS  315 (426)
T ss_dssp             EEEEECS------SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC
T ss_pred             EEEeccC------CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC
Confidence            6555321      1111111222222221  11 1223466677776543       3666677765 678999999999


Q ss_pred             CEEEE-------EeCCCeEEEEEccCCeEEEEe---------ecCCCCeeEEEEcCCCcEEE-EE----eCCCcEEEEEc
Q 004270          528 GLLAT-------VADDLVIRLFDVVALRMVRKF---------EGHTDRITDFCFSEDGKWLL-SS----GMDGSLRIWDV  586 (764)
Q Consensus       528 ~~la~-------~~~d~~i~v~d~~~~~~~~~~---------~~h~~~i~~l~~s~dg~~l~-s~----s~dg~i~iwd~  586 (764)
                      ++|++       +..+++|+|||+.+++...++         ..|..+|.+++|||||++++ ++    +.++.|+|||.
T Consensus       316 ~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         316 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            99995       445789999999998776554         24567799999999999774 32    36889999999


Q ss_pred             CccceEEEEeeCCceEEEEEcCCCCeEE
Q 004270          587 ILARQIDAIHVDVSITALSLSPNMDVLA  614 (764)
Q Consensus       587 ~~~~~~~~~~~~~~v~~l~~sp~g~~la  614 (764)
                      .++++...+..+.     .++|+|.|-+
T Consensus       396 ~T~k~~~~i~~~~-----~~tp~Gk~~~  418 (426)
T d1hzua2         396 KTLKLKAVVKDPR-----LITPTGKFNV  418 (426)
T ss_dssp             TTTEEEEEECCTT-----CCSEEEEEEH
T ss_pred             CCCeEEEEECCCC-----ccCCCceEeE
Confidence            9999999988764     3457777743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=3e-28  Score=255.30  Aligned_cols=361  Identities=11%  Similarity=0.013  Sum_probs=266.8

Q ss_pred             EEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEc---C
Q 004270          105 HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFK---G  179 (764)
Q Consensus       105 ~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~  179 (764)
                      ++++.+.||+|.|||..+++.    +..++.+. .+..++|+|++  +++++++.||.+++||+.+++.  +.+++   +
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v----~~~~~~g~-~~~~v~fSpDG--~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEI----KTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCE----EEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEEcCCCEEEEEECCCCcE----EEEEeCCC-CeeEEEECCCC--CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            358899999999999999999    78887664 46788999999  8999999999999999988763  34443   4


Q ss_pred             CCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEecc----------CCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270          180 WGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHS----------MRGAVTALAFSSDGQPLLASGASSGV  248 (764)
Q Consensus       180 h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~----------~~~~v~~l~fs~d~~~~l~sg~~dg~  248 (764)
                      |.+.+.+..|+|||++| ++++.++.|++||..+++.+..+..+          +.....++.++|+|..++++...++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            55566667788999986 67788999999999999988877632          24567789999999866777788899


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEec-----cCCCCCCeeEEE
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRF  322 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~  322 (764)
                      |.+||..+.+........+...+..++|+|+++++++++. ++.+.+++.+..    +.....     ..|........+
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~----~~~~~~~~g~~~~~~~~~~~~~~  262 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPGRGANFVH  262 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCTTCEEEEE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc----eEEEEeccCccccccCcccceec
Confidence            9999998877655444346678899999999998777665 567888876654    232222     123344444444


Q ss_pred             ecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCce
Q 004270          323 YANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (764)
Q Consensus       323 ~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (764)
                      ...+....+.. .++.+.+|.......                                                     
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~~~~~~~-----------------------------------------------------  289 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIGTDPEGH-----------------------------------------------------  289 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTC-----------------------------------------------------
T ss_pred             CCCCceecccccCCceEEecccccccc-----------------------------------------------------
Confidence            43444444333 366677776432210                                                     


Q ss_pred             EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                         ..+...+....+++++..+++++.+...++|...+..              .|......++
T Consensus       290 -------------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------~~~~~~~sv~  336 (432)
T d1qksa2         290 -------------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------PEAEISGSVA  336 (432)
T ss_dssp             -------------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--------------SSHHHHTCEE
T ss_pred             -------------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC--------------CCCCeeeEEE
Confidence                               1233568888999999999999999999999876432              3333333455


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe-----CCCeEEEEEccCCeEEEEeecC
Q 004270          482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-----DDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-----~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      + ||++.+++++.|+.+++|++.++..+  .+++..+.+++|||||++++++.     .++.|.|||..++++...+++.
T Consensus       337 v-pDg~~la~~s~d~~~k~w~~~~~~~l--~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         337 V-FDIKAMTGDGSDPEFKTLPIAEWAGI--TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             E-EEGGGCCCSSSCCCEEEECHHHHHTC--CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             E-EechhhcccccCCceEeccccccccc--CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            4 89999999999999999998654332  24557788999999999887664     4689999999999999888764


Q ss_pred             CCCeeEEEEcCCCcE
Q 004270          557 TDRITDFCFSEDGKW  571 (764)
Q Consensus       557 ~~~i~~l~~s~dg~~  571 (764)
                      .      .++|+|.+
T Consensus       414 ~------~~tp~G~~  422 (432)
T d1qksa2         414 R------LVTPTGKF  422 (432)
T ss_dssp             T------CCSEEEEE
T ss_pred             C------ccCCCeeE
Confidence            2      23666665

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.3e-26  Score=243.56  Aligned_cols=323  Identities=11%  Similarity=0.022  Sum_probs=237.2

Q ss_pred             EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee----cccccC
Q 004270          195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNA  270 (764)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~h~~~  270 (764)
                      ++++.+.||+|+|||+.+++.+.++..+  ..+..++|+|||+ +|++++.|+.|++||+.+++......    .+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            4567778999999999999999999875  4699999999999 88999999999999999887544322    256667


Q ss_pred             eeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE-EEEEeCCCcEEEEEeecccc
Q 004270          271 IISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       271 v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~  348 (764)
                      +.+++|+|||++++++ ..++.+++||....    .+.....+|...+....+.+++.. .+..+.|+...++....   
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~---  183 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETL----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---  183 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTC----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCcc----ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC---
Confidence            7788889999987554 57899999987765    566667778888888888877654 34555666555544311   


Q ss_pred             cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (764)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (764)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (426)
T d1hzua2         184 --------------------------------------------------------------------------------  183 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCC
Q 004270          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD  507 (764)
Q Consensus       429 ~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~  507 (764)
                                      .+.+.+++...+.......       ..+...+..++++|++++++++. .+..+.+++..+++
T Consensus       184 ----------------~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         184 ----------------TGKVLLVNYKDIDNLTVTS-------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             ----------------TTEEEEEECSSSSSCEEEE-------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             ----------------CCeEEEEEeccccceeeEE-------eccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence                            1233333333332221111       25677889999999999887776 56679999999999


Q ss_pred             eeeeEecC---cceEEEEEeecCCE-E--EEEeCCCeEEEEEccC-------CeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270          508 LKSRWEVG---CSLVKIVYHRVNGL-L--ATVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (764)
Q Consensus       508 ~~~~~~~~---~~i~~~~~s~~~~~-l--a~~~~d~~i~v~d~~~-------~~~~~~~~~h~~~i~~l~~s~dg~~l~s  574 (764)
                      ........   .......+...+.. +  +....|+.+.+|+...       ++....+.+|...+..++|+|||++|++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence            88877654   23334444444432 2  2334578888887654       4788899999999999999999999994


Q ss_pred             -------EeCCCcEEEEEcCccceEEEEe----------eCCceEEEEEcCCCCeEEEEE-----eCCCeEEEEecccc
Q 004270          575 -------SGMDGSLRIWDVILARQIDAIH----------VDVSITALSLSPNMDVLATAH-----VDQNGVYLWVNRCM  631 (764)
Q Consensus       575 -------~s~dg~i~iwd~~~~~~~~~~~----------~~~~v~~l~~sp~g~~lat~~-----~d~~~i~lW~~~~~  631 (764)
                             ++.|++|+|||+.+++....+.          +...|.+++|||||++++.+.     .++ .|+|||.++.
T Consensus       321 ~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~-~i~v~D~~T~  398 (426)
T d1hzua2         321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS-ALVVVDDKTL  398 (426)
T ss_dssp             CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC-EEEEEETTTT
T ss_pred             eecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCC-eEEEEECCCC
Confidence                   4568899999999998876652          233499999999999775442     244 6999997653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=2.9e-28  Score=250.70  Aligned_cols=327  Identities=11%  Similarity=0.058  Sum_probs=234.1

Q ss_pred             eEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC--cEEEEeCCCCe
Q 004270           96 VNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG--SLQLWNISTKK  172 (764)
Q Consensus        96 v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg--~i~iwd~~~~~  172 (764)
                      ...++| ||+++++++ +|.|++||+.++..    . .+ .|...+..+.|+|++  +.|++++.+.  .|++||.++++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~----~-~~-~~~~~v~~~~~spDg--~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV----L-KV-PEPLRIRYVRRGGDT--KVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBE----E-EC-SCCSCEEEEEECSSS--EEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcE----E-Ec-cCCCCEEEEEECCCC--CEEEEEEcCCCCEEEEEECCCCc
Confidence            467888 999999987 68999999988766    2 22 366778888999999  7787766553  79999998776


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe--------
Q 004270          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA--------  244 (764)
Q Consensus       173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~--------  244 (764)
                      .. .+..|...|.+++|+|++++|++++.++.+++|++.+++....+..+ ...+.+++|+|||+ +|+.+.        
T Consensus        78 ~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~-~la~~~~~~~~~~~  154 (360)
T d1k32a3          78 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSR-FIAYGFPLKHGETD  154 (360)
T ss_dssp             EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSC-EEEEEEEECSSTTC
T ss_pred             EE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc-cccccchhhcccee-eeeeecccccccee
Confidence            54 67789999999999999999999999999999999999888877665 77899999999999 666443        


Q ss_pred             --CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC---CceeeEeccCCCCCCee
Q 004270          245 --SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       245 --~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~  319 (764)
                        .++.+++||+.+++......  |...+..+.|+|+|+.|++++.++.+++|+......   ..........|...+..
T Consensus       155 ~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1k32a3         155 GYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  232 (360)
T ss_dssp             SCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             eccccceeeeccccCceeeecc--cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCcccc
Confidence              34569999999887765554  677889999999999999999999999997543311   00112222344455555


Q ss_pred             EEEecCCCEEEEEeCCCc---EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          320 IRFYANGRHILSAGQDRA---FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       320 i~~~~~~~~l~s~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      +.+++++..+.++..+..   .++|.+..                                                   
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  261 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINV---------------------------------------------------  261 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSC---------------------------------------------------
T ss_pred             ceECCCcCcccccceeecccccceeeccc---------------------------------------------------
Confidence            555665554443322211   01111100                                                   


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc---cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS---ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  473 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h  473 (764)
                       ..+..            ..+.   .+...+..+.+.   +.+.+++.+..++.+++||+.+++..            .|
T Consensus       262 -~~~~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------~~  313 (360)
T d1k32a3         262 -DPGDY------------RMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------------EV  313 (360)
T ss_dssp             -CCBCE------------EEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE------------EE
T ss_pred             -CcCce------------eEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE------------Ee
Confidence             00000            0000   011222333333   33346677788899999999876532            45


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC
Q 004270          474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG  515 (764)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  515 (764)
                      .+.|.+++|+|||++|++++.||.|++||+.+++...++..+
T Consensus       314 ~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            667999999999999999999999999999998877766543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.1e-23  Score=208.02  Aligned_cols=276  Identities=10%  Similarity=0.102  Sum_probs=221.3

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ..++++.+++|.+||+++++.+..+.  ....+..++|+|||++| ++++.++.|++||+.+.    ..+..+..+. .+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~----~~~~~~~~~~-~~   76 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-SP   76 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-SE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC----ceeeeeeccc-cc
Confidence            45677889999999999999999887  44567899999999977 56778899999998765    5566665554 46


Q ss_pred             eeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270          318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (764)
                      ..+++++++..++.+ ..++.+.+|+..+++....+.                                           
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  113 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------------------------------------------  113 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred             cccccccccccccccccccceeeecccccceeeeecc-------------------------------------------
Confidence            899999999876654 566788888876554332221                                           


Q ss_pred             eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccC
Q 004270          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (764)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (764)
                                                ......+++++|+|+.+++.. .++.+.+|+..++.....+         .+..
T Consensus       114 --------------------------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  158 (301)
T d1l0qa2         114 --------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------SVGR  158 (301)
T ss_dssp             --------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------ECCS
T ss_pred             --------------------------ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---------ccCC
Confidence                                      125678899999999876554 5678999999998887776         3455


Q ss_pred             cEEEEEECCCCCEEEEEeCC-CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC---CCeEEEEEccCCeEEE
Q 004270          476 EVVGVACDSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVR  551 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~i~v~d~~~~~~~~  551 (764)
                      .+..++++|+++.+++++.+ +.+.+|+....+..........+..+++++++..++++..   ++.|++||..+++.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence            68899999999988877754 6788888888888888888888899999999998877653   4689999999999998


Q ss_pred             EeecCCCCeeEEEEcCCCcEE-EEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270          552 KFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS  600 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~  600 (764)
                      .+..+ ..+.+++|+|||++| ++++.|++|++||+.+++++.++.....
T Consensus       239 ~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~  287 (301)
T d1l0qa2         239 RIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN  287 (301)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCC
Confidence            88754 568999999999987 5777899999999999999999876443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=9.2e-23  Score=203.28  Aligned_cols=274  Identities=12%  Similarity=0.190  Sum_probs=215.2

Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (764)
Q Consensus       155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs  233 (764)
                      ++++.+++|.+||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+  ..+..++|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--~~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc--ccccccccc
Confidence            35678899999999999999999864 5578999999999885 5567899999999999999988765  457999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccC
Q 004270          234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                      +++..+++++..++.+.+|+..+++....+.  +......+.|+|++..++ ++..++.+.+|+....    ....... 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-  155 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVS-  155 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-
T ss_pred             cccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeecccc----ceeeecc-
Confidence            9999667777788899999999999888886  556788999999998765 5556888999987665    3444443 


Q ss_pred             CCCCCeeEEEecCCCEEEEEeCCC-cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270          313 HSAPPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (764)
                      +...+..++++|+++.+++++.+. .+.+|+..........                                       
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  196 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV---------------------------------------  196 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------------------------
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecc---------------------------------------
Confidence            445678899999999988887664 4455554332211111                                       


Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCcccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSER  468 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~  468 (764)
                                                    .....+..++++++|+.++++..+   +.|.+||+.+++....+.     
T Consensus       197 ------------------------------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-----  241 (301)
T d1l0qa2         197 ------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-----  241 (301)
T ss_dssp             ------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-----
T ss_pred             ------------------------------cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-----
Confidence                                          012456788999999998876544   689999999998877663     


Q ss_pred             ccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270          469 SNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (764)
Q Consensus       469 ~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~  516 (764)
                          +...+.+++|+|+|++| ++++.|+.|++||+.+++.+.++....
T Consensus       242 ----~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~  286 (301)
T d1l0qa2         242 ----VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGK  286 (301)
T ss_dssp             ----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             ----CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCC
Confidence                44568999999999976 577789999999999999998887643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3.4e-24  Score=218.49  Aligned_cols=312  Identities=8%  Similarity=-0.011  Sum_probs=220.3

Q ss_pred             EEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc
Q 004270          187 CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA  266 (764)
Q Consensus       187 ~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  266 (764)
                      ++|++++++|++++.++.|.+||+.+++.+.++..++...+.+++|+|||+.+++++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            47899999999999999999999999999999886656678999999999955677778999999999999888776622


Q ss_pred             -----cccCeeEEEEecCCCEEEEEc------------CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270          267 -----HDNAIISLHFFANEPVLMSAS------------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (764)
Q Consensus       267 -----h~~~v~~l~~~~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (764)
                           +...+..++|+|||+++++++            .++.+.+|+.......... .. ......+..+.+++++..+
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RT-FPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EE-EECCSSCCCEEECTTSCEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE-Ee-eeccCceEEEEecCCCEEE
Confidence                 223567899999999888765            4667888877654321111 11 1122345556666666655


Q ss_pred             EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (764)
Q Consensus       330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (764)
                      ++   ++.+.+|++.++.....+...                                                      
T Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  182 (346)
T d1jmxb_         160 VA---GPDIYKMDVKTGKYTVALPLR------------------------------------------------------  182 (346)
T ss_dssp             EE---SSSEEEECTTTCCEEEEECST------------------------------------------------------
T ss_pred             Ee---CCcceEEEccCCCEEEEEecC------------------------------------------------------
Confidence            44   244778877655433322110                                                      


Q ss_pred             eeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (764)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (764)
                                     .....+.++|++..+..... ++.+.+++.                         ...+.+....
T Consensus       183 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~  222 (346)
T d1jmxb_         183 ---------------NWNRKGYSAPDVLYFWPHQSPRHEFSMLYT-------------------------IARFKDDKQD  222 (346)
T ss_dssp             ---------------TCCCTTBCCCBCCCCCCCCCTTCEEEEEEE-------------------------EEEC------
T ss_pred             ---------------CCccceEEeccccEEEEEecCCCceEeeee-------------------------eeeeccCcee
Confidence                           12223344555554433322 223322221                         1122334455


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeE--ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc
Q 004270          489 MISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (764)
Q Consensus       489 l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s  566 (764)
                      ++++..++.+.+|++.++......  .+...+..+.+++++.+++.... +.|++||..+++.+..+. +...+.+++||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s  300 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFD  300 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEc
Confidence            666777888999999988766554  33467888999999988887664 579999999999998886 45579999999


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       567 ~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                      |||++|++++.|+.|+|||+.+++.+..++.+.
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            999999999999999999999999999998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=6.7e-24  Score=215.40  Aligned_cols=300  Identities=9%  Similarity=0.016  Sum_probs=214.3

Q ss_pred             CEEEEEEcCCeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc-----
Q 004270          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----  267 (764)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h-----  267 (764)
                      +++++++.|++|.+||+++++.+..+..+. ...+.+++|+|||++++++++.++.|.+||+.+++.+..+. .+     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cCCCccc
Confidence            589999999999999999999999987543 35678999999999555777889999999999999988876 33     


Q ss_pred             ccCeeEEEEecCCCEEEEEc------------CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270          268 DNAIISLHFFANEPVLMSAS------------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (764)
Q Consensus       268 ~~~v~~l~~~~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (764)
                      ...+..++|+|+++++++++            .++.+.+||....    ....... +...+..++|+|+|+++++++.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFE-APRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEE-CCSSCCCEEECTTSSCEEEESSS
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC----eEEEecc-ccCCceEEEEcCCCCEEEEEcCC
Confidence            34566899999999988776            3567777876655    3444443 45668899999999999998755


Q ss_pred             CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (764)
Q Consensus       336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (764)
                        +.+||..+......+......                                                         
T Consensus       156 --~~~~d~~~~~~~~~~~~~~~~---------------------------------------------------------  176 (337)
T d1pbyb_         156 --LHVMDPEAGTLVEDKPIQSWE---------------------------------------------------------  176 (337)
T ss_dssp             --EEEEETTTTEEEEEECSTTTT---------------------------------------------------------
T ss_pred             --cceeeeecCcEEEEeecCCcc---------------------------------------------------------
Confidence              678887665544332211000                                                         


Q ss_pred             eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC
Q 004270          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (764)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (764)
                                  ....+++++..+......                          .+...........+.........+
T Consensus       177 ------------~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T d1pbyb_         177 ------------AETYAQPDVLAVWNQHES--------------------------SGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             ------------TTTBCCCBCCCCCCCCTT--------------------------TTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             ------------ccceecCCcceeeccccc--------------------------cceeeeeeeeeeeccceeeecccC
Confidence                        000111111111100000                          111111112222233333344456


Q ss_pred             CeEEEEECCCCCeeeeE--ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270          496 GDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  573 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  573 (764)
                      +.+.+|+..++......  ........+.+++++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEE
T ss_pred             ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEE
Confidence            77899999988765543  234677888999999988776  5899999999999999886 567789999999999999


Q ss_pred             EEeCCCcEEEEEcCccceEEEEeeCC
Q 004270          574 SSGMDGSLRIWDVILARQIDAIHVDV  599 (764)
Q Consensus       574 s~s~dg~i~iwd~~~~~~~~~~~~~~  599 (764)
                      +++.|++|+|||+.+++.+..++.+.
T Consensus       296 v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         296 LGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EEeCCCcEEEEECCCCcEEEEEECCC
Confidence            99999999999999999999987643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=4.7e-23  Score=209.08  Aligned_cols=298  Identities=10%  Similarity=-0.003  Sum_probs=219.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCC--CCCeEEEEEcCCCCEEE-EEEcCCeEEEEEccCCceEEEEeccCC----
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGW--GSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMR----  224 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~~~~~----  224 (764)
                      +++++++.|++|.+||+++++.+.++..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            47999999999999999999999998653  45678999999999875 566789999999999999988875421    


Q ss_pred             CCEEEEEEeeCCCCEEEEEe------------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270          225 GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i  292 (764)
                      ..+..++|+|+++ .++++.            .++.+.+||..+++....+.  +...+..++|+|+++++++++.+  +
T Consensus        82 ~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~--~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGRD--L  156 (337)
T ss_dssp             ECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESSS--E
T ss_pred             cceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcCC--c
Confidence            2345789999999 565554            46789999999999888886  55678899999999999998754  6


Q ss_pred             EEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270          293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (764)
Q Consensus       293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (764)
                      .+||....    ........+. ......+.+++..+..... .+....+.....                         
T Consensus       157 ~~~d~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  206 (337)
T d1pbyb_         157 HVMDPEAG----TLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTAR-------------------------  206 (337)
T ss_dssp             EEEETTTT----EEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB-------------------------
T ss_pred             ceeeeecC----cEEEEeecCC-ccccceecCCcceeeccccccceeeeeeeeee-------------------------
Confidence            78877654    3444433332 2233344454433322222 222222221110                         


Q ss_pred             ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (764)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~  451 (764)
                                                                                    .+......+..++.+.+|
T Consensus       207 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         207 --------------------------------------------------------------KDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             --------------------------------------------------------------TTSCTTSGGGEEEEEEEE
T ss_pred             --------------------------------------------------------------eccceeeecccCccEEEE
Confidence                                                                          011111112234456777


Q ss_pred             ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEE
Q 004270          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA  531 (764)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la  531 (764)
                      +..++.......       ..+...+..+++++++.+++.+  ++.+++||+.+++.+..+.....+.+++|+|||++|+
T Consensus       225 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         225 DLETGEMAMREV-------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             ETTTCCEEEEEE-------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             EcCCCcEEEEEe-------cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEE
Confidence            777665544322       2567788899999999988765  5899999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCeEEEEeec
Q 004270          532 TVADDLVIRLFDVVALRMVRKFEG  555 (764)
Q Consensus       532 ~~~~d~~i~v~d~~~~~~~~~~~~  555 (764)
                      +++.++.|+|||.++++.+.+++-
T Consensus       296 v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         296 LGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCcEEEEEEC
Confidence            999999999999999999988763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1e-22  Score=207.30  Aligned_cols=311  Identities=9%  Similarity=0.007  Sum_probs=230.0

Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEE-EEcCCeEEEEEccCCceEEEEec
Q 004270          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAV-GCSDGKIHVHNVRYDEELVTFTH  221 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp~~~~la~-g~~dg~i~iwd~~~~~~~~~~~~  221 (764)
                      ++++++  +++++++.+++|.+||+++++.+.+++ .|...+.+++|+|||+++++ +..++.|.+||+.+++.+..+..
T Consensus         3 a~~~~~--~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGH--EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCTTC--EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cCCCCC--cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            567888  799999999999999999999999987 45677899999999998755 45789999999999999988875


Q ss_pred             cCC-----CCEEEEEEeeCCCCEEEEEe------------CCCcEEEEECCCceeeeeeecc-cccCeeEEEEecCCCEE
Q 004270          222 SMR-----GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREA-HDNAIISLHFFANEPVL  283 (764)
Q Consensus       222 ~~~-----~~v~~l~fs~d~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l  283 (764)
                      ...     ..+..++|+|||+ .+++++            .++.+.+|+..+++....+... ....+..+.+++++..+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             cccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            422     2356799999999 555543            4778999999888766555411 23456667777777665


Q ss_pred             EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHh
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  362 (764)
                      +++   +.+.+|+....    ..+..+..+ ..+..+.++|++..++.. ..++.+.+++...                 
T Consensus       160 ~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  214 (346)
T d1jmxb_         160 VAG---PDIYKMDVKTG----KYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA-----------------  214 (346)
T ss_dssp             EES---SSEEEECTTTC----CEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE-----------------
T ss_pred             EeC---CcceEEEccCC----CEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeee-----------------
Confidence            543   45888876554    344444333 445666777877655443 3344444444221                 


Q ss_pred             hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (764)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (764)
                                                                                          .+.+....+..+
T Consensus       215 --------------------------------------------------------------------~~~~~~~~~~~~  226 (346)
T d1jmxb_         215 --------------------------------------------------------------------RFKDDKQDPATA  226 (346)
T ss_dssp             --------------------------------------------------------------------EC-------CCC
T ss_pred             --------------------------------------------------------------------eeccCceeEeec
Confidence                                                                                011122334444


Q ss_pred             ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEE
Q 004270          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (764)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~  522 (764)
                      ..++.+.+|+..++.......       ..|...+..+.+++++.+++.... +.|++||..+++.+..+.....+.+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va  298 (346)
T d1jmxb_         227 DLLYGYLSVDLKTGKTHTQEF-------ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVA  298 (346)
T ss_dssp             EEEEEEEEEETTTCCEEEEEE-------EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             cCCceEEEEECCCCceEEEEe-------ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEE
Confidence            556678889988877665543       367888999999999888877664 689999999999999999888999999


Q ss_pred             EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC
Q 004270          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (764)
Q Consensus       523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~  558 (764)
                      |+|||++|++++.|+.|++||.++++.+.+++.+.+
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            999999999999999999999999999999885543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=1.2e-19  Score=186.56  Aligned_cols=328  Identities=9%  Similarity=-0.042  Sum_probs=229.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEE-----cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe--------
Q 004270          178 KGWGSSISSCVSSPALDVVAVGC-----SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA--------  244 (764)
Q Consensus       178 ~~h~~~i~~~~~sp~~~~la~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~--------  244 (764)
                      ..+..++..++++|||+.+++..     ..+.|.+||..+++.+.++..+ .  ...++|+|||+ .|++++        
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~--~~~~a~SpDG~-~l~va~~~~~~~~~   92 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-F--LPNPVAAHSGS-EFALASTSFSRIAK   92 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-C--CccEEEcCCCC-EEEEEeecCCcccc
Confidence            35788899999999999987652     3467999999999999988754 2  33799999999 666553        


Q ss_pred             --CCCcEEEEECCCceeeeeeecccccC-------eeEEEEecCCCEEEEE--cCCCcEEEEEecCCCCCceeeEeccCC
Q 004270          245 --SSGVISIWNLEKRRLQSVIREAHDNA-------IISLHFFANEPVLMSA--SADNSIKMWIFDTTDGDPRLLRFRSGH  313 (764)
Q Consensus       245 --~dg~i~iwd~~~~~~~~~~~~~h~~~-------v~~l~~~~~~~~l~s~--~~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (764)
                        .++.|.+||..+++.+..+. .+...       ...+.|+++++.++..  ..++.+.+|+....    +..    .+
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~----~~  163 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS----SDD----QL  163 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC----eEE----EE
Confidence              45789999999999888876 44333       2457888888866554  34567888876543    222    34


Q ss_pred             CCCCeeEEEecCCCEE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          314 SAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       314 ~~~v~~i~~~~~~~~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      ...+.++.++|+++.+ ++.+.|+.+.+|+..............                                    
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~------------------------------------  207 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM------------------------------------  207 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec------------------------------------
Confidence            4556789999988755 578889999999987654333221100                                    


Q ss_pred             eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                                                .............+++++.++ ..+.++.+.+|+...+........      ..
T Consensus       208 --------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~------~~  254 (373)
T d2madh_         208 --------------------------LTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPI------DA  254 (373)
T ss_pred             --------------------------cccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEee------cc
Confidence                                      000111223445555555444 455788899999887654333221      23


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~  552 (764)
                      +........+.|.+...+..+.|+....+                     +..++..++....++.+.+||..+++.+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------------------~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~  313 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYL---------------------LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ  313 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEE---------------------ecCCCceEEeecCCCeEEEEECCCCcEEEE
Confidence            44555566666666666666666543332                     233466677788889999999999999988


Q ss_pred             eecCCCCeeEEEEcCCCcE--EEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCC
Q 004270          553 FEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN  609 (764)
Q Consensus       553 ~~~h~~~i~~l~~s~dg~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~  609 (764)
                      +. +...+..++|||||+.  +++++.|++|++||+.+|+.+..+..+ ...+.+++.++
T Consensus       314 ~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         314 IS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            76 5677899999999984  467889999999999999999999754 45777777554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=4.2e-19  Score=182.52  Aligned_cols=327  Identities=11%  Similarity=-0.050  Sum_probs=223.4

Q ss_pred             CCccccEEEEeCCCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------
Q 004270          136 DDKFTPTCIMHPDTYLNKVIVG-----SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------  200 (764)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------  200 (764)
                      +.......+++|++  +.+++.     +..+.+.+||..+++.+.++..+..+  .++|+|||++|+++.          
T Consensus        19 ~~~p~~~~a~spdg--~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          19 ADGPTNDEAPGADG--RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCccccccCCCC--CEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            45566778899999  677664     23457999999999999999876544  799999999999875          


Q ss_pred             cCCeEEEEEccCCceEEEEeccCCC------CEEEEEEeeCCCCEEEEE-eCCCcEEEEECCCceeeeeeecccccCeeE
Q 004270          201 SDGKIHVHNVRYDEELVTFTHSMRG------AVTALAFSSDGQPLLASG-ASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (764)
Q Consensus       201 ~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~l~fs~d~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~  273 (764)
                      .++.|.+||..+++.+..+..+...      ....+.|+++++.+++.. ..++.+.+|+....+....     .....+
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-----LSSPTC  169 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-----ecccee
Confidence            3578999999999998887654221      124588999998443333 4567899999887765443     335678


Q ss_pred             EEEecCCCE-EEEEcCCCcEEEEEecCCCCCceeeEecc--CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270          274 LHFFANEPV-LMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (764)
Q Consensus       274 l~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~  350 (764)
                      +.++|+++. +++.+.|+.+.+|+...............  ++........+.+++ .++..+.++.+.+|+........
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEE
Confidence            899999874 46788999999998776532221111111  122223344455555 45556678888888876543211


Q ss_pred             cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (764)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (764)
                      ..                                                   .++               .........
T Consensus       249 ~~---------------------------------------------------~~~---------------~~~~~~~~~  262 (373)
T d2madh_         249 KA---------------------------------------------------PID---------------ALSGGRKAD  262 (373)
T ss_pred             EE---------------------------------------------------eec---------------cccCcEEee
Confidence            10                                                   000               001122222


Q ss_pred             EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      .+.|.+...+..+.++..                              ...+...+..+++...++.+.+||..+++.+.
T Consensus       263 ~~~~~~~~~~~~~~d~~~------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         263 TWRPGGWQQVAYLKSSDG------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             eeccCcceeeEEecCCCe------------------------------EEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence            233333222222222211                              11223345567778888999999999999999


Q ss_pred             eEecCcceEEEEEeecCC--EEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270          511 RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (764)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~--~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d  568 (764)
                      .+.....+..++|+|||+  ++++++.|+.|+|||+.+++.++++.++....+.+++.++
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999989999999999998  4467889999999999999999999988888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3.9e-19  Score=181.33  Aligned_cols=305  Identities=10%  Similarity=0.018  Sum_probs=204.5

Q ss_pred             EEeCCCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEE
Q 004270          144 IMHPDTYLNKVIVGS-----QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVH  208 (764)
Q Consensus       144 ~~~p~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iw  208 (764)
                      +.+|++  .++++..     .++.+.+||..+++.+.++..+..+  .++|||||++|++.+          .++.|++|
T Consensus         8 a~spdg--~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           8 APAPDA--RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCT--TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeCCCC--CEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            457888  6777653     4567999999999999999865444  799999999888653          47899999


Q ss_pred             EccCCceEEEEeccCC------CCEEEEEEeeCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccc-------cCeeE
Q 004270          209 NVRYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHD-------NAIIS  273 (764)
Q Consensus       209 d~~~~~~~~~~~~~~~------~~v~~l~fs~d~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~h~-------~~v~~  273 (764)
                      |+.+++.+..+..+..      .....++|+++++ .++.+.  .+..+.+|+..+++.+..+. .+.       .....
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTF  161 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEE
T ss_pred             ECCCCCEEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEe-cCCcceEeecCCcce
Confidence            9999998888764311      2235689999999 555543  56789999999999888776 222       12334


Q ss_pred             EEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccc
Q 004270          274 LHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  352 (764)
Q Consensus       274 l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  352 (764)
                      +.+++++..++... .++.+.+++.....         ..+...+....+.+++..++.++.++.+.+|++..+..... 
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  231 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFH---------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL-  231 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCS---------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC-
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEeccccc---------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE-
Confidence            55566665444432 23344444322211         13344455667777778888888888888888754432110 


Q ss_pred             cchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE
Q 004270          353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  432 (764)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  432 (764)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (355)
T d2bbkh_         232 --------------------------------------------------------------------------------  231 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC----------CeEEEEE
Q 004270          433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----------GDIKVWD  502 (764)
Q Consensus       433 s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----------g~v~iwd  502 (764)
                                         +..++.......      ..........+++++++..++....+          ..|.+||
T Consensus       232 -------------------~~~~~~~~~~~~------~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         232 -------------------PAVEALTEAERA------DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             -------------------CCEESSCHHHHH------TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             -------------------eccCCcccceEe------eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence                               000000000000      00011112235566666666554432          4799999


Q ss_pred             CCCCCeeeeEecCcceEEEEEeecCC--EEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC
Q 004270          503 FKGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (764)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~--~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg  569 (764)
                      ..+++.+..+..+..+.+++|+|||+  +++++..|+.|+|||+++++.++++.++...-..+.+.++|
T Consensus       287 ~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            99999999998888899999999998  45666779999999999999999998876666666666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.6e-18  Score=174.95  Aligned_cols=297  Identities=11%  Similarity=0.109  Sum_probs=200.0

Q ss_pred             EEEEEeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCC
Q 004270          239 LLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (764)
                      ++++++.+++|++|++.....   +..+  .|.+.+..++|+|||++|+++ ..|+.|++|+++............ .+.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-ccC
Confidence            567788999999999876532   3333  478899999999999988554 458999999998765543333332 355


Q ss_pred             CCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270          315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (764)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (764)
                      ..+..++|+|||++|++++. ++.+.+|+............                                       
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~---------------------------------------  123 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---------------------------------------  123 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------------------------
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc---------------------------------------
Confidence            66788999999999998875 66888888754432211100                                       


Q ss_pred             EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcccceecCcccccccc
Q 004270          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYA  472 (764)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (764)
                                                 ..+...+.++.++|+++++++++.. ..+.+|+...............  ...
T Consensus       124 ---------------------------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~  174 (333)
T d1ri6a_         124 ---------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--TTV  174 (333)
T ss_dssp             ---------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--ECS
T ss_pred             ---------------------------cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee--eee
Confidence                                       0223566788999999998887755 5789999876544332211000  123


Q ss_pred             ccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeee----eEe-------cCcceEEEEEeecCCEEEEE-eCCCeE
Q 004270          473 HNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS----RWE-------VGCSLVKIVYHRVNGLLATV-ADDLVI  539 (764)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~----~~~-------~~~~i~~~~~s~~~~~la~~-~~d~~i  539 (764)
                      +......++|++++..++... ..+...+|+........    ...       .......++++++++++++. ..++.+
T Consensus       175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  254 (333)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeE
Confidence            455678999999998877665 55678888865432211    111       12456778899999876655 557899


Q ss_pred             EEEEccCCeEEEE---eecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEc--Cccce--EEEEeeCCceEEEEE
Q 004270          540 RLFDVVALRMVRK---FEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQ--IDAIHVDVSITALSL  606 (764)
Q Consensus       540 ~v~d~~~~~~~~~---~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~--~~~~~--~~~~~~~~~v~~l~~  606 (764)
                      .+|++........   ...+...+.+++|+|||++|++++ .++.|++|++  .+|++  +..+.......++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~  329 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV  329 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEE
Confidence            9999876543322   233446678999999999988776 4689999954  66754  344554444444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.6e-18  Score=175.18  Aligned_cols=303  Identities=14%  Similarity=0.077  Sum_probs=196.6

Q ss_pred             CeEEEEEcCCCCEEEEEE-----cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE---------EeCCCc
Q 004270          183 SISSCVSSPALDVVAVGC-----SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS---------GASSGV  248 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s---------g~~dg~  248 (764)
                      ++...+.+||++.+++..     .++.|.+||..+++.+.++..+   ....++|+|||+.+.++         +..++.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC---CCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            334446789999988764     3567999999999999988764   23479999999944443         234789


Q ss_pred             EEEEECCCceeeeeeecccc-------cCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270          249 ISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (764)
                      |++||+.+++.+..+. .+.       .....++|+|+++.++.++  .+..+.+|+....    +.+.....+..   .
T Consensus        80 v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~  151 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDC---Y  151 (355)
T ss_dssp             EEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSE---E
T ss_pred             EEEEECCCCCEEEEEe-cCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC----cEeeEEecCCc---c
Confidence            9999999999888775 222       2345689999999887764  4567888876554    33333222111   0


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      ..+.......+.                                                                    
T Consensus       152 ~~~~~~~~~~~~--------------------------------------------------------------------  163 (355)
T d2bbkh_         152 HIFPTAPDTFFM--------------------------------------------------------------------  163 (355)
T ss_dssp             EEEEEETTEEEE--------------------------------------------------------------------
T ss_pred             eEeecCCcceEE--------------------------------------------------------------------
Confidence            111111122222                                                                    


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (764)
                                                      ++++|+.+++.. .++.+.+++......             .+...+.
T Consensus       164 --------------------------------~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~  198 (355)
T d2bbkh_         164 --------------------------------HCRDGSLAKVAFGTEGTPEITHTEVFHP-------------EDEFLIN  198 (355)
T ss_dssp             --------------------------------EETTSCEEEEECCSSSCCEEEECCCCSC-------------TTSCBCS
T ss_pred             --------------------------------EcCCCCEEEEEecCCCeEEEEecccccc-------------eecceee
Confidence                                            333333333221 122333333322211             2233334


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCeeee--Eec-----------CcceEEEEEeecCCEEEEEeCC---------
Q 004270          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR--WEV-----------GCSLVKIVYHRVNGLLATVADD---------  536 (764)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~-----------~~~i~~~~~s~~~~~la~~~~d---------  536 (764)
                      ...+.+++..++.++.++.+++|++..++....  ...           ......+++++++..++....+         
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            455666777788888888888888877654221  111           1233558889999988776543         


Q ss_pred             -CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc--EEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCC
Q 004270          537 -LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNM  610 (764)
Q Consensus       537 -~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g  610 (764)
                       ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||+.+++.++.+.... ....+.+.++|
T Consensus       279 ~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence             3799999999999988874 35689999999998  45667789999999999999999997543 35566555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.5e-18  Score=169.50  Aligned_cols=308  Identities=16%  Similarity=0.198  Sum_probs=199.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEE--cCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEe--ccCCCCE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEF--KGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFT--HSMRGAV  227 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~--~~~~~~v  227 (764)
                      .+++++.+++|++||+.+...+..+  ..|.+.+..++|||||++|++++. |+.|++|++..+.....+.  ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3466778999999998755333222  356789999999999999966654 7999999998665433322  2234567


Q ss_pred             EEEEEeeCCCCEEEEEe-CCCcEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCc
Q 004270          228 TALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDP  304 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~  304 (764)
                      ..++|+|||+ +|++++ .++.|.+|+........... ..+...+.++.++|+++++++++. +..+.+|+........
T Consensus        86 ~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            8899999999 565555 57789999987765444333 246677889999999998877764 5678899876543221


Q ss_pred             eee--EeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          305 RLL--RFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       305 ~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                      ...  .....+...+..++|++++..++... ..+...+++............                           
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------------------  217 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ---------------------------  217 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE---------------------------
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee---------------------------
Confidence            111  11223455678899999988877655 455677777543221111000                           


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccc
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRG  460 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~  460 (764)
                                           .          ................++++++++++++.. .++.+.+|++.......
T Consensus       218 ---------------------~----------~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (333)
T d1ri6a_         218 ---------------------T----------LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  266 (333)
T ss_dssp             ---------------------E----------EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             ---------------------e----------eeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence                                 0          000001112235667789999999777654 56789999887654443


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEEC--CCCCe--eeeEecCcceEEEEEe
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF--KGRDL--KSRWEVGCSLVKIVYH  524 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~--~~~~~--~~~~~~~~~i~~~~~s  524 (764)
                      ....     ...+...+.+++|+|||++|++++ .++.|++|++  .++++  +..+.......++.++
T Consensus       267 ~~~~-----~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         267 SKEG-----FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             EEEE-----EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred             EEEE-----EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEEE
Confidence            3321     013345678899999999887776 4688999954  56654  3344444444455444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=3.8e-16  Score=165.40  Aligned_cols=380  Identities=10%  Similarity=0.031  Sum_probs=216.2

Q ss_pred             EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEEc---------CCeEEE
Q 004270          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCS---------DGKIHV  207 (764)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~sp~~~~la~g~~---------dg~i~i  207 (764)
                      ...+.+++  ++++  ..++.+.+||+.+++....+..     |...|.+..|||||++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~--~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH--EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS--EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCC--EEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            34567777  4444  4678899999999988776654     4578999999999999998853         467899


Q ss_pred             EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc-----------------cccC
Q 004270          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA-----------------HDNA  270 (764)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----------------h~~~  270 (764)
                      ||+.+++.. .+..+ ...+..+.|||||+ .+|.. .++.+.+|+..+++.......+                 ..+.
T Consensus        97 ~d~~~~~~~-~l~~~-~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          97 YDLNKRQLI-TEERI-PNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EETTTTEEC-CSSCC-CTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EECCCCccc-ccccC-CccccccccccCcc-eeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            999987643 34443 67899999999999 56654 4678999999988765544311                 1233


Q ss_pred             eeEEEEecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc
Q 004270          271 IISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (764)
Q Consensus       271 v~~l~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~  349 (764)
                      ...+.|+|||+.|++...|.+ +..|.+......       .........+.+...+.    ...+..+.+|++......
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~  241 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-------SLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSV  241 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-------TCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSS
T ss_pred             ccccEECCCCCccceeEecCCcCceEEEEeeccC-------CCCCCeeeeeccccccc----cCCcceEEEEECCCccee
Confidence            456779999998888776544 555544321100       00011111112111111    112334667776654432


Q ss_pred             ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEE
Q 004270          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (764)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (764)
                      .........                                                ..         .........+..
T Consensus       242 ~~~~~~~~~------------------------------------------------~~---------~~~~~~~~~~~~  264 (470)
T d2bgra1         242 TNATSIQIT------------------------------------------------AP---------ASMLIGDHYLCD  264 (470)
T ss_dssp             SCCCEEEEC------------------------------------------------CC---------HHHHTSCEEEEE
T ss_pred             eeccccccC------------------------------------------------Cc---------cccCCCCceEEE
Confidence            221100000                                                00         000011133455


Q ss_pred             EEEccCCCEEEEEec-CC---c--EEEEECcCCcccceecCcc-----ccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270          430 CTISACGNFAVLGTA-GG---W--IERFNLQSGISRGSYLDMS-----ERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (764)
Q Consensus       430 ~~~s~~g~~l~~g~~-~g---~--i~i~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v  498 (764)
                      +.|.+++..++.... .+   .  +..+|..++..........     ......|........+++++..++.+..||..
T Consensus       265 ~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~  344 (470)
T d2bgra1         265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR  344 (470)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred             EEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCc
Confidence            667777665554322 11   2  2333444444332211000     00001222222222333334445666677765


Q ss_pred             EE--EECCCCCeeeeEecCcceEEEEEeecCCEEE-EEeCCC------eEEEEEccCCeEEEEe----ecCCCCeeEEEE
Q 004270          499 KV--WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDL------VIRLFDVVALRMVRKF----EGHTDRITDFCF  565 (764)
Q Consensus       499 ~i--wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~d~------~i~v~d~~~~~~~~~~----~~h~~~i~~l~~  565 (764)
                      ++  |+...+.......++..+..+ ++++++.+. ++..++      .|+-.++..+.....+    .+|...+.+++|
T Consensus       345 ~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~f  423 (470)
T d2bgra1         345 HICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSF  423 (470)
T ss_dssp             EEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEE
T ss_pred             eeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEE
Confidence            55  455555555555555667666 555566553 333322      2444455554444444    367888999999


Q ss_pred             cCCCcEEE---EEeCCCcEEEEEcCccceEEEEeeC
Q 004270          566 SEDGKWLL---SSGMDGSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       566 s~dg~~l~---s~s~dg~i~iwd~~~~~~~~~~~~~  598 (764)
                      ||||+|++   ++...-.+.+|+..+|+.+..+...
T Consensus       424 Spdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            99999987   3334456999999999999988643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.5e-15  Score=153.38  Aligned_cols=308  Identities=7%  Similarity=-0.054  Sum_probs=199.2

Q ss_pred             EEEeCCCCCCEEEE-EeCCC--cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEE
Q 004270          143 CIMHPDTYLNKVIV-GSQEG--SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHN  209 (764)
Q Consensus       143 ~~~~p~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iwd  209 (764)
                      .+..+++...+++. ...+|  .+.+||..+++.+..+..+...  .++|+|||+.|++.+          .|+.|.+||
T Consensus        25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEE
Confidence            34556663222332 23334  4777799999999998876654  589999999998865          367899999


Q ss_pred             ccCCceEEEEeccCC------CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE
Q 004270          210 VRYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (764)
Q Consensus       210 ~~~~~~~~~~~~~~~------~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  283 (764)
                      ..+++.+..+..+..      .....++|+|||++++++...++.+.+||+.+++....+. .+.....   +......+
T Consensus       103 ~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~---~~~~~~~~  178 (368)
T d1mdah_         103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFHI---HPGAAATH  178 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCCC---EEEETTEE
T ss_pred             CCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-ccCcceE---ccCCCceE
Confidence            999999988864321      1234689999999555555578999999999999988876 3332211   11233466


Q ss_pred             EEEcCCCcEEEEEecCCCCCceee--EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH
Q 004270          284 MSASADNSIKMWIFDTTDGDPRLL--RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (764)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  361 (764)
                      +..+.||.+.+|+...........  .....+...+....+.+++..+.+.  .+.+.+++...+...............
T Consensus       179 v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             EEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccccccee
Confidence            667778888888766543221111  1223455566677777787665544  455666665543322111000000000


Q ss_pred             hhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (764)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (764)
                      .                                                   .     ..........++++++++.+++
T Consensus       257 ~---------------------------------------------------~-----~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         257 K---------------------------------------------------A-----DNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             H---------------------------------------------------H-----TTEEECSSSCEEEETTTTEEEE
T ss_pred             e---------------------------------------------------e-----eeecCCCceeEEEcCCCCEEEE
Confidence            0                                                   0     0000022234678888887776


Q ss_pred             EecCC---------cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE--EEEEeCCCeEEEEECCCCCeee
Q 004270          442 GTAGG---------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL--MISAGYHGDIKVWDFKGRDLKS  510 (764)
Q Consensus       442 g~~~g---------~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~  510 (764)
                      ...++         .|.+||..+++....+         .+...+.+++|+|||+.  ++++..|+.|++||..+++.+.
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---------~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTSGPI---------SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECC---------EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EecCCCceeecCCceEEEEECCCCcEeEEe---------cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            54332         5899999999877765         34567889999999973  4566788999999999999999


Q ss_pred             eEecCcceEEEEE
Q 004270          511 RWEVGCSLVKIVY  523 (764)
Q Consensus       511 ~~~~~~~i~~~~~  523 (764)
                      .++.......+++
T Consensus       352 ~i~~g~~P~~l~~  364 (368)
T d1mdah_         352 SVELDKGPESLSV  364 (368)
T ss_dssp             ECCCCSCCCEEEC
T ss_pred             EEECCCCCCEEEE
Confidence            9987766666655

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=4.2e-15  Score=151.68  Aligned_cols=300  Identities=8%  Similarity=-0.018  Sum_probs=186.9

Q ss_pred             CCCeEEEEEcCCCCEEEEE---EcC--CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe----------C
Q 004270          181 GSSISSCVSSPALDVVAVG---CSD--GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA----------S  245 (764)
Q Consensus       181 ~~~i~~~~~sp~~~~la~g---~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~----------~  245 (764)
                      .++...++..++++.....   ..+  ..+.+||..+++.+.....+. .+  .++|+|||+ .+++.+          .
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~--~~a~spDg~-~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGS-DFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSS-CEEEEEEEETTTTSSSE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC--cceECCCCC-EEEEEcccCcccccccc
Confidence            4445555677888754332   233  457777999999988887653 33  589999999 455433          3


Q ss_pred             CCcEEEEECCCceeeeeeecccc-------cCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270          246 SGVISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (764)
                      ++.|.+||..+++.+..+. .+.       .....++|+|||++|+++. .++.+.+||+...    +.......+....
T Consensus        95 d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~----~~~~~~~~~~~~~  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----SDDQLTKSASCFH  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----EEEEEEECSSCCC
T ss_pred             CCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC----cEeEEeeccCcce
Confidence            6779999999999888776 332       2234689999999888775 5799999998776    4555444443322


Q ss_pred             eeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (764)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (764)
                      .   +......++..+.||.+.++++............                                          
T Consensus       170 ~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~------------------------------------------  204 (368)
T d1mdah_         170 I---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA------------------------------------------  204 (368)
T ss_dssp             C---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC------------------------------------------
T ss_pred             E---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec------------------------------------------
Confidence            1   1123456666777888888776543221110000                                          


Q ss_pred             CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (764)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (764)
                                          ...                                                  ..+...+
T Consensus       205 --------------------~~~--------------------------------------------------~~~~~~~  214 (368)
T d1mdah_         205 --------------------QCT--------------------------------------------------GAQNCSS  214 (368)
T ss_dssp             --------------------CSC--------------------------------------------------TTSCBCS
T ss_pred             --------------------ccc--------------------------------------------------cccccce
Confidence                                000                                                  0111122


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE----------e---cCcceEEEEEeecCCEEEEEeCC--------
Q 004270          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW----------E---VGCSLVKIVYHRVNGLLATVADD--------  536 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------~---~~~~i~~~~~s~~~~~la~~~~d--------  536 (764)
                      ....+++++..+.+.  .+.+.+++...+......          .   .......+++++++..+++...+        
T Consensus       215 ~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         215 QAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             eecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecC
Confidence            222333333322221  222333333222211110          0   01223457888888877665432        


Q ss_pred             -CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE--EEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEc
Q 004270          537 -LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (764)
Q Consensus       537 -~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~s  607 (764)
                       ..|.+||..+++.+..+.. ...+.+++|||||+.  ++++..|+.|++||..+|+.+..++.......|++-
T Consensus       293 ~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         293 AENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             CceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence             3699999999999888774 356899999999973  456778999999999999999999887767777663

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.65  E-value=3e-16  Score=157.78  Aligned_cols=134  Identities=9%  Similarity=0.003  Sum_probs=103.0

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcC------------------------------CCCCeEEEEEcCCCCEEEEEE-cC
Q 004270          154 VIVGSQEGSLQLWNISTKKKLYEFKG------------------------------WGSSISSCVSSPALDVVAVGC-SD  202 (764)
Q Consensus       154 l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~i~~~~~sp~~~~la~g~-~d  202 (764)
                      +++|+.+|.|.+|++.+++.+.++..                              |.........+|||++|.+.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56778899999999999999888642                              223345555679999997665 67


Q ss_pred             CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE------------------EEEECCCceeeeeee
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI------------------SIWNLEKRRLQSVIR  264 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i------------------~iwd~~~~~~~~~~~  264 (764)
                      ++|.++|+.+++....+.......+..++|+|+|+...+++..+..+                  ..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999999998887765567899999999998544444333333                  558888888877776


Q ss_pred             cccccCeeEEEEecCCCEEEEEcCC
Q 004270          265 EAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       265 ~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                        -.+....+.|+|+|+++++++.+
T Consensus       174 --v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         174 --VDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             --ESSCCCCEEECSSSSEEEEEESC
T ss_pred             --cCCCccceEECCCCCEEEEEecC
Confidence              34568899999999998887765

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=1.2e-14  Score=146.00  Aligned_cols=314  Identities=8%  Similarity=-0.013  Sum_probs=197.6

Q ss_pred             EEEEecCCcEEEEEccCCcccccceeeEec------------------------------CCccccEEEEeCCCCCCEEE
Q 004270          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKL------------------------------DDKFTPTCIMHPDTYLNKVI  155 (764)
Q Consensus       106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~p~~~~~~l~  155 (764)
                      ++|++.+|+|+||++.+++.    +..+..                              |..........||+  ++|+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~----l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG--r~lf   87 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRE----LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG--KYLF   87 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEE----EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE--EEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcE----EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC--CEEE
Confidence            56777899999999988776    222211                              11111112246888  6776


Q ss_pred             EE-eCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEcCCCC--EEEEEEcCC-----------------eEEEEEccCCc
Q 004270          156 VG-SQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALD--VVAVGCSDG-----------------KIHVHNVRYDE  214 (764)
Q Consensus       156 ~~-~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp~~~--~la~g~~dg-----------------~i~iwd~~~~~  214 (764)
                      +. ..++.|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence            55 577899999999999988775 4578899999999998  555554432                 23558888888


Q ss_pred             eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASS-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      ...++..+  +....++|+|+|+ ++++.+.+ ..+..++..+.+....+.  ....-..+.++|+|+++..+ .++.+.
T Consensus       168 v~~qI~v~--~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~--v~n~p~~~~~~~dGk~~~v~-~~~v~v  241 (441)
T d1qnia2         168 VAWQVIVD--GNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVV--VFNVERIAAAVKAGNFKTIG-DSKVPV  241 (441)
T ss_dssp             EEEEEEES--SCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEE--EEEHHHHHHHHHTTCCBCCT-TCCCCE
T ss_pred             eeEEEecC--CCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEE--eCCccceEEEecCCCEEEeC-CCCcEE
Confidence            88877764  5688999999999 55555543 445445544444443333  11122334567889876654 466777


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE-EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (764)
                      ++.....    ..+...... ..+..+.++|||+++++ +..++++.+||+.+.....+   +.                
T Consensus       242 vd~~~~~----~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~---~~----------------  297 (441)
T d1qnia2         242 VDGRGES----EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE---DK----------------  297 (441)
T ss_dssp             EECSSSC----SSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT---TS----------------
T ss_pred             EEcccCC----ceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh---cc----------------
Confidence            7754332    344444443 34688999999998765 56789999999865322111   00                


Q ss_pred             cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  452 (764)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~  452 (764)
                      +.+              ...+.+                        .....-.....+|+++|+...+...|..|..|+
T Consensus       298 ~~~--------------~~~~~~------------------------~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         298 IEL--------------RDTIVA------------------------EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             SCG--------------GGGEEE------------------------CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             CCc--------------ceEEEe------------------------ecccccCcccceecCCceEEEcccccceEEEec
Confidence            000              000000                        001113345568999999889999999999999


Q ss_pred             CcCCc------cccee-cCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270          453 LQSGI------SRGSY-LDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (764)
Q Consensus       453 ~~~~~------~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (764)
                      +....      ..... ......-..+|...+.+.+++|||++|++++
T Consensus       340 ~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         340 IADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            85221      11100 0000001137888888889999999999994

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=7.3e-13  Score=139.72  Aligned_cols=137  Identities=13%  Similarity=0.071  Sum_probs=98.8

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccc-eeeEecCCccccEEEEeCCCCCCEEEEEeC---------CCcEEEEeCCCC
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAP-VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---------EGSLQLWNISTK  171 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---------dg~i~iwd~~~~  171 (764)
                      +++++.  ..++.+.+||+.+++..... -.++..+...+....|+||+  ++|+.++.         ++.+.+||+.++
T Consensus        27 d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg--~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          27 DHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             SSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC--CEEEEEECCcceeeeccCceEEEEECCCC
Confidence            454444  35788999999998862110 11222234556788899999  88888754         567899999988


Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC-----------------CCCEEEEEEee
Q 004270          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-----------------RGAVTALAFSS  234 (764)
Q Consensus       172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~v~~l~fs~  234 (764)
                      + +..+..|...+....|||||+.||.. .++.+.+|+..+++.......+.                 .+....+.|||
T Consensus       103 ~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP  180 (470)
T d2bgra1         103 Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (470)
T ss_dssp             E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             c-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC
Confidence            7 45678889999999999999999986 46789999999887665443221                 12345688999


Q ss_pred             CCCCEEEEEeC
Q 004270          235 DGQPLLASGAS  245 (764)
Q Consensus       235 d~~~~l~sg~~  245 (764)
                      ||+ .|+....
T Consensus       181 DGk-~ia~~~~  190 (470)
T d2bgra1         181 NGT-FLAYAQF  190 (470)
T ss_dssp             TSS-EEEEEEE
T ss_pred             CCC-ccceeEe
Confidence            999 6666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=1.3e-10  Score=116.76  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             cEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeee---E---ecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCC
Q 004270          476 EVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSR---W---EVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL  547 (764)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~---~---~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~  547 (764)
                      .+.+++|+|+|+++++++. ...|.+|+......+..   .   ........++|+|+++++.+.. .+++|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4678999999998877763 45788887654322221   1   1236788999999999886665 5789999998765


Q ss_pred             eEE--EE---ee--------------cCCCCeeEEEEcCCCcEEEEEeC------CCcEEEEEcCccceEEE-E---ee-
Q 004270          548 RMV--RK---FE--------------GHTDRITDFCFSEDGKWLLSSGM------DGSLRIWDVILARQIDA-I---HV-  597 (764)
Q Consensus       548 ~~~--~~---~~--------------~h~~~i~~l~~s~dg~~l~s~s~------dg~i~iwd~~~~~~~~~-~---~~-  597 (764)
                      +..  ..   ..              .+......+.++|||++|+++..      ...|..|++.....+.. .   .. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            432  11   11              01123557899999999987642      23477787765322221 1   11 


Q ss_pred             --CCceEEEEEcC-CCCeEEEEEeCCCeEEEEeccc
Q 004270          598 --DVSITALSLSP-NMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       598 --~~~v~~l~~sp-~g~~lat~~~d~~~i~lW~~~~  630 (764)
                        .....+++++| +|++|+++..++..|.+|+.+.
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence              12367899998 8999999988877899998753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=3e-09  Score=106.62  Aligned_cols=173  Identities=7%  Similarity=-0.025  Sum_probs=111.0

Q ss_pred             CCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWD  502 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd  502 (764)
                      ..+.++.|+|+|+++++.... ..|.+|+......+.....   ..........+.++|+|+++++.... .+++|.+|+
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            457889999999988887653 4788887654322221110   00113456789999999999886555 688999999


Q ss_pred             CCCCCeeeeEec--------------------CcceEEEEEeecCCEEEEEeC------CCeEEEEEccCCeEEEE----
Q 004270          503 FKGRDLKSRWEV--------------------GCSLVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRK----  552 (764)
Q Consensus       503 ~~~~~~~~~~~~--------------------~~~i~~~~~s~~~~~la~~~~------d~~i~v~d~~~~~~~~~----  552 (764)
                      +..++.......                    ......+.++|||++|+++..      ...|..|++.....+..    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~  301 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence            987654322211                    123457899999999988743      23477777754322221    


Q ss_pred             --eecCCCCeeEEEEcC-CCcEEEEEe-CCCcEEEEEcCcc--ceEEEEeeCCc
Q 004270          553 --FEGHTDRITDFCFSE-DGKWLLSSG-MDGSLRIWDVILA--RQIDAIHVDVS  600 (764)
Q Consensus       553 --~~~h~~~i~~l~~s~-dg~~l~s~s-~dg~i~iwd~~~~--~~~~~~~~~~~  600 (764)
                        ..........++|+| +|++|+++. .++.|.+|++...  ..+..++.+.+
T Consensus       302 ~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p  355 (365)
T d1jofa_         302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEP  355 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCST
T ss_pred             eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCCC
Confidence              112334567899998 899887775 6789999987643  33444444443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.1e-09  Score=106.68  Aligned_cols=365  Identities=12%  Similarity=0.094  Sum_probs=201.4

Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCeEEEEEcCCCCEEEEEEc---------CCeEEEEEccC
Q 004270          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCS---------DGKIHVHNVRY  212 (764)
Q Consensus       145 ~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~sp~~~~la~g~~---------dg~i~iwd~~~  212 (764)
                      +.+++  .++ .-..+|.|.+||+.+++....+..+   .-.+....+|||+++|+.+..         .+.+.++|+.+
T Consensus        24 W~~~~--~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          24 WISDT--EFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             BSSSS--CBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EeCCC--cEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            45555  333 3456788999999988765444432   346778889999999888743         47889999998


Q ss_pred             CceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----------------eEE
Q 004270          213 DEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----------------ISL  274 (764)
Q Consensus       213 ~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-----------------~~l  274 (764)
                      +........ ...+.+....|||||+. +|-.. ++.|.+.+..++........+..+.|                 .++
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CceeeccCccCCccccceeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            875433221 11345667899999995 44433 67899998877765554442222211                 356


Q ss_pred             EEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccccc
Q 004270          275 HFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS  353 (764)
Q Consensus       275 ~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~  353 (764)
                      .|||||+.|+.... +..+..+.+.....         .....+..+.+-.-|..-    ....+.++|+..+...... 
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~---------~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~-  244 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTG---------SIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEM-  244 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSS---------SSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEEC-
T ss_pred             EECCCCCeEEEEEecccccceeecccccc---------cccceeeeeeccccCCCC----CceeEEEEecCCCcEEEEE-
Confidence            67888887776653 23344444322111         011112222221111100    0112455555333211110 


Q ss_pred             chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC--CCCCCCeEEEE
Q 004270          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC--PENPTAVKACT  431 (764)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~v~~~~  431 (764)
                                                                                     ....  ......+..+.
T Consensus       245 ---------------------------------------------------------------~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         245 ---------------------------------------------------------------MPPDDPRMREYYITMVK  261 (465)
T ss_dssp             ---------------------------------------------------------------CCCCCGGGSSEEEEEEE
T ss_pred             ---------------------------------------------------------------eccCcCccccceeeeeE
Confidence                                                                           0000  01113467788


Q ss_pred             EccCCCEEEEEecCC----cEEEEECcCCcccceecCccccccccccCc----EEEEEECCCCCEEEE---EeCCC--eE
Q 004270          432 ISACGNFAVLGTAGG----WIERFNLQSGISRGSYLDMSERSNYAHNGE----VVGVACDSTNTLMIS---AGYHG--DI  498 (764)
Q Consensus       432 ~s~~g~~l~~g~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~l~s---~~~dg--~v  498 (764)
                      |++++++++......    .+.++|..+|.....+..       ...+.    -....|+++|+.++.   .-.+|  .+
T Consensus       262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-------~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~l  334 (465)
T d1xfda1         262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (465)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE-------cCCceEeccCCceeEccCCCeeEEEEeeeecccCce
Confidence            999988766654422    688899998877655431       11111    134578899875432   22333  33


Q ss_pred             EEEECC------CCCeeeeEe-cCcceEEE-EEeecCCEEEEEe-CC--CeEEEE--EccCCeEEEEee---cCCCCeeE
Q 004270          499 KVWDFK------GRDLKSRWE-VGCSLVKI-VYHRVNGLLATVA-DD--LVIRLF--DVVALRMVRKFE---GHTDRITD  562 (764)
Q Consensus       499 ~iwd~~------~~~~~~~~~-~~~~i~~~-~~s~~~~~la~~~-~d--~~i~v~--d~~~~~~~~~~~---~h~~~i~~  562 (764)
                      ....+.      .+.....+. +.-.|..+ .+..+++.+...+ .+  +.-++|  ++........+.   .......+
T Consensus       335 y~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~  414 (465)
T d1xfda1         335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS  414 (465)
T ss_dssp             EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred             EEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEE
Confidence            333321      222233333 33455554 5788887765433 32  233344  444333222222   23345678


Q ss_pred             EEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEeeC
Q 004270          563 FCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVD  598 (764)
Q Consensus       563 l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~  598 (764)
                      +.|||+|++++.....   -.+.+++..+++.+..+...
T Consensus       415 ~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         415 ASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             EEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred             EEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcCC
Confidence            9999999998854432   46888998889988887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=1.3e-08  Score=99.12  Aligned_cols=249  Identities=13%  Similarity=0.062  Sum_probs=158.9

Q ss_pred             ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (764)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~  293 (764)
                      +.+..+..  ...+..++++|||+ ++++...+++|..||.... .. .+. .....+.+++|.++|+++++...++.+.
T Consensus        19 ~v~~~~p~--~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~-~~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPV--NTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQ-IHA-TVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECT--TCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EE-EEE-ECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cEEEECCC--CCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-EE-EEE-cCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            34445543  24688999999999 8888888999999986543 22 233 4667899999999999999888888898


Q ss_pred             EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (764)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (764)
                      .|+.....+....+... .....++.+++.++++++++.+.++.+..++.....                          
T Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~--------------------------  145 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS--------------------------  145 (302)
T ss_dssp             EEEEECTTSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE--------------------------
T ss_pred             EEEecccccceeecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCc--------------------------
Confidence            88877665544333332 334556788888888777776666666555543211                          


Q ss_pred             CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (764)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~  453 (764)
                                                                                                ..+|-.
T Consensus       146 --------------------------------------------------------------------------~~~~~~  151 (302)
T d2p4oa1         146 --------------------------------------------------------------------------GSIWLE  151 (302)
T ss_dssp             --------------------------------------------------------------------------EEEEEE
T ss_pred             --------------------------------------------------------------------------ceeEec
Confidence                                                                                      000000


Q ss_pred             cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee---eEecCcceEEEEEeecCCEE
Q 004270          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS---RWEVGCSLVKIVYHRVNGLL  530 (764)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~i~~~~~s~~~~~l  530 (764)
                      .........        .........+.++. +.++++.+..+.|..++........   ..........+++.++|+++
T Consensus       152 ~~~~~~~~~--------~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~  222 (302)
T d2p4oa1         152 HPMLARSNS--------ESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  222 (302)
T ss_dssp             CGGGSCSST--------TCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             CCccceeec--------cCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEE
Confidence            000000000        12223455666654 3455566677888888876543322   22234556779999999988


Q ss_pred             EEEeCCCeEEEEEccCCe-EEEEeecCCCCeeEEEE---cCCCcEEEEEeCC
Q 004270          531 ATVADDLVIRLFDVVALR-MVRKFEGHTDRITDFCF---SEDGKWLLSSGMD  578 (764)
Q Consensus       531 a~~~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~---s~dg~~l~s~s~d  578 (764)
                      ++...++.|..++..... .+......-...++++|   ++|++.|..++..
T Consensus       223 va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         223 GATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            888889999999876432 23333334456899999   7788877765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.4e-08  Score=94.36  Aligned_cols=129  Identities=10%  Similarity=-0.023  Sum_probs=85.2

Q ss_pred             EEEEECCCCCEEEEE-eCCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEE
Q 004270          478 VGVACDSTNTLMISA-GYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVR  551 (764)
Q Consensus       478 ~~l~~~~~~~~l~s~-~~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~  551 (764)
                      ....+++++..+... ..+|  .|...++..+................++|+++.++..+.++   .+.+.+...+..  
T Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--  207 (269)
T d2hqsa1         130 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--  207 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--
T ss_pred             cccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--
Confidence            344555555544433 3444  45566666665554445556777889999999988876654   455556555543  


Q ss_pred             EeecCCCCeeEEEEcCCCcEEEEEeC---CCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270          552 KFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (764)
Q Consensus       552 ~~~~h~~~i~~l~~s~dg~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp  608 (764)
                      ....+........|||||++|+..+.   ...|+++++..+...........+...+|||
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            33345566778899999999986553   3478999998776655445555588899998

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=5.2e-08  Score=93.00  Aligned_cols=239  Identities=10%  Similarity=0.119  Sum_probs=144.9

Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      .|.|.|.. |.....+..+...+...+|||||+.||.....   ..+.+.+...+...... .. .+......|+|+|+.
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SF-PRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CC-SSCEEEEEECTTSSE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-ee-ecccccceecCCCCe
Confidence            47777865 43333343446778899999999999977554   34666676655544333 32 678899999999994


Q ss_pred             EEEEEeCCCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          239 LLASGASSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       239 ~l~sg~~dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      ++......+...++..  .........  .+........+++++..+ ++...++...+|..+.......   ....+..
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~---~~~~~~~  171 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---RITWEGS  171 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE---ECCCSSS
T ss_pred             eeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeeecccccce---eeecccc
Confidence            4444444444443333  222222222  344455566677777644 4445567667776665543222   2234555


Q ss_pred             CCeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270          316 PPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (764)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (764)
                      ......++|+++.++..+.+ +...+|..........+                                          
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------------------------------  209 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV------------------------------------------  209 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE------------------------------------------
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccceE------------------------------------------
Confidence            66778899999988876544 44455444322111110                                          


Q ss_pred             eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccc
Q 004270          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                                            +    ..........|||||+.|+..+..   ..++++++..+.... +.        
T Consensus       210 ----------------------~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt--------  254 (269)
T d2hqsa1         210 ----------------------L----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LP--------  254 (269)
T ss_dssp             ----------------------C----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CC--------
T ss_pred             ----------------------e----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-Ee--------
Confidence                                  0    112445667899999998766543   378899998766543 32        


Q ss_pred             cccCcEEEEEECCC
Q 004270          472 AHNGEVVGVACDST  485 (764)
Q Consensus       472 ~h~~~v~~l~~~~~  485 (764)
                      ...+.+...+|+|-
T Consensus       255 ~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         255 ATDGQVKFPAWSPY  268 (269)
T ss_dssp             CSSSEEEEEEECCC
T ss_pred             CCCCcEEeEEeCCC
Confidence            45667888899984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=1.6e-08  Score=95.98  Aligned_cols=237  Identities=7%  Similarity=-0.045  Sum_probs=152.5

Q ss_pred             cCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270          269 NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (764)
Q Consensus       269 ~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~  347 (764)
                      ....++++.++|...++.. ..+.+..++.....   ...... +-...+..++++++++.+++....+.+++++-....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPF-NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C---EEECCC-CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---EEEecc-CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            4568999999998666544 44666665433221   222222 223456889999999877766555555444322111


Q ss_pred             ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCe
Q 004270          348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  427 (764)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  427 (764)
                      ....                                                                     ......+
T Consensus        90 ~~~~---------------------------------------------------------------------~~~~~~p  100 (260)
T d1rwia_          90 TVLP---------------------------------------------------------------------FDGLNYP  100 (260)
T ss_dssp             EECC---------------------------------------------------------------------CCSCCSE
T ss_pred             eeee---------------------------------------------------------------------eeeeeec
Confidence            1000                                                                     0112567


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (764)
Q Consensus       428 ~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~  507 (764)
                      ..+++.++|+++++-..+..+..++...........        .-.....+++++++++++++...++.|..++.....
T Consensus       101 ~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_         101 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC--------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ccccccccceeEeeccccccccccccccceeeeeee--------cccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            889999999988887777788888876544322211        222345789999999988888888999999977654


Q ss_pred             eeeeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270          508 LKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (764)
Q Consensus       508 ~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~  586 (764)
                      ..... ..-.....+++.++|+++++....+.|..++.............-.....|+++++|.++++-..++.|+..+.
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            43322 22256788999999998888888889998887654332222223356789999999988777666776665553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.07  E-value=8.7e-08  Score=93.24  Aligned_cols=198  Identities=13%  Similarity=0.095  Sum_probs=132.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc-cCcEEEEEECCCCCEEEEEeC---------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAGY---------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~---------  494 (764)
                      .....++++++|+.++++...+.+..++...+.........     .+. -...+.++++++|++.++-..         
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~-----~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDS-----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCT-----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccc-----cccccCCCcEEEECCCCCEEEecCccCccccccc
Confidence            34678999999999988888888999998765433221100     011 123578999999998877432         


Q ss_pred             ------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-----EEEEEeCCCeEEEEEccCCeEE------EEeec-C
Q 004270          495 ------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-----LLATVADDLVIRLFDVVALRMV------RKFEG-H  556 (764)
Q Consensus       495 ------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-----~la~~~~d~~i~v~d~~~~~~~------~~~~~-h  556 (764)
                            +|.|..++. .++.......-...+.++|++++.     ++++-+..+.|+.||+.....+      ..+.+ +
T Consensus       146 ~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             BTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             ceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence                  234444443 334433333334557899999875     4455567889999987644222      12222 2


Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270          557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (764)
Q Consensus       557 ~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~  628 (764)
                      ......+++..+|++.++....+.|.+||...++.+..+..+. .+++++|.||++.|..+..+...|+..+.
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            2335679999999988887788999999988888888887764 58999999999877666555444555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=1.7e-07  Score=89.73  Aligned_cols=191  Identities=13%  Similarity=0.163  Sum_probs=135.2

Q ss_pred             eEEEEEccCC-CEEEEE-ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270          427 VKACTISACG-NFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (764)
Q Consensus       427 v~~~~~s~~g-~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~  504 (764)
                      ...+++..+. ..+++. +.++.|..++.. +.....+.       ........+++++++++++++....+.+.+++..
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~-------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~  143 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  143 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cccccccccccccceeccCCcccccccccc-ccceeecC-------CCcccccceeccccCCcEEEEeeccceeeEeccC
Confidence            3445544443 333333 334566666653 44444442       2445667899999999988888887888888754


Q ss_pred             CCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee--cCCCCeeEEEEcCCCcEEEEEeC-C
Q 004270          505 GRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM-D  578 (764)
Q Consensus       505 ~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~s~s~-d  578 (764)
                       ++.+..+...   .....+++.++++++++....+.|++||.. ++.+.++.  ++......|++.++|+++++-.. +
T Consensus       144 -g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         144 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             -CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCC
Confidence             5566655433   567888999999998888889999999975 56666663  34556789999999997776543 4


Q ss_pred             CcEEEEEcCccceEEEEeeCC---ceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          579 GSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       579 g~i~iwd~~~~~~~~~~~~~~---~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      +.|.+++ ++|+.+..+....   ....+++.|||.+++ +..+. .|++|+...
T Consensus       222 ~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~-~v~~fr~~~  273 (279)
T d1q7fa_         222 FNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY-RLYIYRYVQ  273 (279)
T ss_dssp             CEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT-EEEEEECSC
T ss_pred             cEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCC-eEEEEEeee
Confidence            5799998 6799888886543   388999999997655 55565 699999763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=3.1e-08  Score=93.90  Aligned_cols=236  Identities=12%  Similarity=0.029  Sum_probs=149.0

Q ss_pred             CeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee
Q 004270          183 SISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS  261 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~  261 (764)
                      .-..+++.++|++.++.. ..+.+..++........ +..........++++++|. ++++....+.+++++-.+.....
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-eccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeee
Confidence            457999999999666544 45777777655333222 2222134567899999998 77777666677776655554443


Q ss_pred             eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (764)
Q Consensus       262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~  341 (764)
                      ...  ......++++.++++++++-...+.+..++....  .  ...........+..+++.++++.+++...++.+..+
T Consensus        93 ~~~--~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          93 PFD--GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK--T--QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CCC--SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS--S--CEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eee--eeeecccccccccceeEeeccccccccccccccc--e--eeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence            332  3456789999999988777666665655543222  1  111112233566889999999888777777778877


Q ss_pred             EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (764)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (764)
                      +.........                                                                    ..
T Consensus       167 d~~~~~~~~~--------------------------------------------------------------------~~  178 (260)
T d1rwia_         167 EAESNNQVVL--------------------------------------------------------------------PF  178 (260)
T ss_dssp             CTTTCCEEEC--------------------------------------------------------------------CC
T ss_pred             ccccceeeee--------------------------------------------------------------------ec
Confidence            7543211100                                                                    00


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (764)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw  501 (764)
                      ........++++++|+++++...++.|..++........ +.       ...-....+|+++++|.++++-..+++|+..
T Consensus       179 ~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-~~-------~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-CC-------CCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-Ec-------cCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            112557889999999988888888899988876543222 11       1233467899999999888876777776655


Q ss_pred             E
Q 004270          502 D  502 (764)
Q Consensus       502 d  502 (764)
                      +
T Consensus       251 ~  251 (260)
T d1rwia_         251 T  251 (260)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.03  E-value=2.9e-07  Score=89.46  Aligned_cols=246  Identities=9%  Similarity=0.082  Sum_probs=156.0

Q ss_pred             CeEEEEEcCCCCEEEEEEc-------CCeEEEEEccCCceEEEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270          183 SISSCVSSPALDVVAVGCS-------DGKIHVHNVRYDEELVTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIW  252 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~-------dg~i~iwd~~~~~~~~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw  252 (764)
                      ....++|.|+|++.++...       +|+|..||..++.........   ..+....++|.+++. .++++...+.|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEE
Confidence            3567889999987776432       467999998877654433211   123467899999998 77777777779999


Q ss_pred             ECCCceeeeeeecccc----cCeeEEEEecCCCEEEEEcC-------------CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270          253 NLEKRRLQSVIREAHD----NAIISLHFFANEPVLMSASA-------------DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (764)
Q Consensus       253 d~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~~~-------------d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (764)
                      +...+....... ...    ...+.+++.++|.+.++-..             ...-++|.++....   .... .....
T Consensus        98 ~~~g~~~~~~~~-~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~---~~~~-~~~~~  172 (314)
T d1pjxa_          98 QTDGTFEEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ---MIQV-DTAFQ  172 (314)
T ss_dssp             ETTSCEEECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC---EEEE-EEEES
T ss_pred             eCCCcEEEEEec-cccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc---eeEe-eCCcc
Confidence            987654332222 111    23678999999987776432             11224555543321   1111 12233


Q ss_pred             CCeeEEEecCCC----EE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270          316 PPLCIRFYANGR----HI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (764)
Q Consensus       316 ~v~~i~~~~~~~----~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (764)
                      ..+.++|++++.    .| ++-+..+.|..|++........                                       
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---------------------------------------  213 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------------------------------------  213 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---------------------------------------
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce---------------------------------------
Confidence            457889988764    34 4445677787777654321110                                       


Q ss_pred             ceeEeeeCCceEEEEEccceeecceee-cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270          391 NVVTCHMDTAQAYVWRLQNFVLGEHIL-RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (764)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (764)
                                             ...+ ............+++..+|+..++....+.|.+|+...+.....+.      
T Consensus       214 -----------------------~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~------  264 (314)
T d1pjxa_         214 -----------------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR------  264 (314)
T ss_dssp             -----------------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE------
T ss_pred             -----------------------eeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE------
Confidence                                   0000 0011112346689999999998888889999999998887666553      


Q ss_pred             cccccCcEEEEEECCCCC-EEEEEeCCCeEEEEECC
Q 004270          470 NYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFK  504 (764)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~  504 (764)
                        ......++++|.|+++ ++++.+.+|.|...++.
T Consensus       265 --~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         265 --CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             --CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             --CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence              3446788999999987 55666778888888865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=4.3e-07  Score=88.58  Aligned_cols=241  Identities=11%  Similarity=0.066  Sum_probs=149.8

Q ss_pred             CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCC
Q 004270          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDG  302 (764)
Q Consensus       225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~  302 (764)
                      ..+..++|.++|+ +.++-...+.|..|+..+++...... ........+++.++|+++++...+  ....++.++....
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            4567899999998 77777788999999988876665554 455678899999999877765433  3455666555443


Q ss_pred             CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC----cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR----AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      ..........-...++.+++.++|++.++.....    .-.+|.+..                                 
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~---------------------------------  164 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP---------------------------------  164 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT---------------------------------
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec---------------------------------
Confidence            3222221112234567788888887655532211    011111110                                 


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGI  457 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~  457 (764)
                                         +.+.+....               ..-.....++|+|+++.|+++ +..+.|..|++....
T Consensus       165 -------------------dg~~~~~~~---------------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         165 -------------------DFRTVTPII---------------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             -------------------TSCCEEEEE---------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -------------------ccceeEEEe---------------eccceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence                               000000000               001456789999999977555 567899999876432


Q ss_pred             ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc-------ceEEEEEeecCCEE
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-------SLVKIVYHRVNGLL  530 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l  530 (764)
                      .....................+++++++|++.++....+.|.++| ..++.+..+....       .+++++|.+++..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~  289 (319)
T d2dg1a1         211 VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  289 (319)
T ss_dssp             SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             ceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEE
Confidence            211110000000012223467899999999888888899999999 4688888887542       47899999888777


Q ss_pred             EEEeC
Q 004270          531 ATVAD  535 (764)
Q Consensus       531 a~~~~  535 (764)
                      ++...
T Consensus       290 ~~t~~  294 (319)
T d2dg1a1         290 IICSN  294 (319)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            66553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=5e-07  Score=86.30  Aligned_cols=240  Identities=12%  Similarity=0.160  Sum_probs=157.2

Q ss_pred             CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec-----ccccCeeEEEEecCCCEEEEE--cCCCcEEEEEec
Q 004270          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSA--SADNSIKMWIFD  298 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~--~~d~~i~vw~~~  298 (764)
                      ....++++++|+ ++++-..++.|++||.+ ++.+..+..     +.......+++.++....+..  +.++.|..++.+
T Consensus        24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            468999999998 77777778899999964 665555531     112234566666654433332  334455555332


Q ss_pred             CCCCCceeeEec-cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270          299 TTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (764)
Q Consensus       299 ~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (764)
                      .     ...... ......+..+++.++|+.+++....+.+.+++... +..                            
T Consensus       102 g-----~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~----------------------------  147 (279)
T d1q7fa_         102 G-----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL----------------------------  147 (279)
T ss_dssp             S-----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE----------------------------
T ss_pred             c-----cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-cee----------------------------
Confidence            1     222222 33455677888888888777766666666665321 100                            


Q ss_pred             EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (764)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (764)
                                               ..+.             ...+......+++.++|+.+++....+.|++|+.. ++
T Consensus       148 -------------------------~~~g-------------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~  188 (279)
T d1q7fa_         148 -------------------------HKFG-------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQ  188 (279)
T ss_dssp             -------------------------EEEE-------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CC
T ss_pred             -------------------------eccc-------------ccccccccceeeeccceeEEeeeccccceeeeecC-Cc
Confidence                                     0010             01223667889999999999998889999999975 44


Q ss_pred             ccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEE
Q 004270          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATV  533 (764)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~  533 (764)
                      ....+..      .++.....+|+++++|+.+++-.. ++.|.+|+ .+++.+..+...   .....+++.++|.++ ++
T Consensus       189 ~~~~~g~------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~  260 (279)
T d1q7fa_         189 YLRQIGG------EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV-LA  260 (279)
T ss_dssp             EEEEESC------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE-EE
T ss_pred             eeeeecc------cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EE
Confidence            4444421      245556789999999997777544 45799998 567777777544   457899999998754 55


Q ss_pred             eCCCeEEEEEccCCe
Q 004270          534 ADDLVIRLFDVVALR  548 (764)
Q Consensus       534 ~~d~~i~v~d~~~~~  548 (764)
                      +.++.|++|...+..
T Consensus       261 ~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         261 SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ETTTEEEEEECSCCC
T ss_pred             eCCCeEEEEEeeeec
Confidence            688999999987653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=4.7e-07  Score=88.30  Aligned_cols=188  Identities=12%  Similarity=0.028  Sum_probs=126.1

Q ss_pred             CCeEEEEEccCCCEEEEEec----CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC------
Q 004270          425 TAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------  494 (764)
                      .....++++++|+++++...    .+.+...+...+........      ..-......++++++|++.++...      
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~  155 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  155 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC------CCcccCCcceeEEeccceeecccccccccC
Confidence            45778999999998887654    34566666665554433321      122345788999999997776432      


Q ss_pred             CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccCC-eEEEE-------eecCCCCeeEEEE
Q 004270          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVAL-RMVRK-------FEGHTDRITDFCF  565 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~-~~~~~-------~~~h~~~i~~l~~  565 (764)
                      .+.+..++...+........-.....++|+|+++.|.++ +..+.|+.|++... .....       ..........|++
T Consensus       156 ~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v  235 (319)
T d2dg1a1         156 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  235 (319)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             cceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence            233555554444333333333556789999999866554 56789999997632 11111       1111223567999


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-------ceEEEEEcCCCCeEEEEEeC
Q 004270          566 SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVD  619 (764)
Q Consensus       566 s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~g~~lat~~~d  619 (764)
                      .++|++.++....+.|.++| ++|+.+..+..+.       .+++++|.++++.|+++..+
T Consensus       236 D~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         236 DSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             BTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            99999888888899999999 6799999987654       37899999988888777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=2.5e-07  Score=89.72  Aligned_cols=198  Identities=14%  Similarity=0.043  Sum_probs=135.3

Q ss_pred             ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc--e
Q 004270          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--E  215 (764)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~  215 (764)
                      .+...+++.|++  +.+++...+++|..|+.. ++. ..+......+.+++|+++|+++++...++.+..++.....  .
T Consensus        28 ~~~e~iAv~pdG--~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          28 TFLENLASAPDG--TIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CCEEEEEECTTS--CEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcCCEEECCCC--CEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            355678999999  778888889989888854 433 3344456789999999999999998888888888876543  2


Q ss_pred             EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---------cccCeeEEEEecCCCEEEEE
Q 004270          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---------HDNAIISLHFFANEPVLMSA  286 (764)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------h~~~v~~l~~~~~~~~l~s~  286 (764)
                      ..............+++.++|+ ++++.+.++.+..+|...+.........         .......+.+.. +.++++.
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~  181 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSN  181 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEE
T ss_pred             eeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeeec
Confidence            2222233346789999999998 8888788889999998877543332211         112345666653 3355566


Q ss_pred             cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270          287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (764)
Q Consensus       287 ~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~  343 (764)
                      +..+.|..++.+..... ..... ......+..+++.++|++.++...++.|..++.
T Consensus       182 ~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKP-GEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             TTTTEEEEEEBCTTSCB-CCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             CCCCeEEeccccccccc-ccccc-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            66777777766543221 11111 123345678999999998888778888888764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.1e-06  Score=90.33  Aligned_cols=221  Identities=14%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe---------CCCcEEEEeCCCCe
Q 004270          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS---------QEGSLQLWNISTKK  172 (764)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~---------~dg~i~iwd~~~~~  172 (764)
                      ++.++. -..+|.|.+||+.+++.... +..-.+.........++|++  ++++.+.         ..+.+.++|+.+++
T Consensus        27 ~~~~~~-~~~~g~i~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~SpD~--~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          27 DTEFIY-REQKGTVRLWNVETNTSTVL-IEGKKIESLRAIRYEISPDR--EYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             SSCBCC-CCSSSCEEEBCGGGCCCEEE-ECTTTTTTTTCSEEEECTTS--SEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             CCcEEE-EeCCCcEEEEECCCCCEEEE-EcCccccccccceeEECCCC--CeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            344433 34578899999988765210 11111122234556799999  7887764         35678999999887


Q ss_pred             EEEEE--cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCE-----------------EEEEEe
Q 004270          173 KLYEF--KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV-----------------TALAFS  233 (764)
Q Consensus       173 ~~~~~--~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~l~fs  233 (764)
                      .....  ......+....|||||+.||... ++.|.+.+..++..++....+..+.|                 .++.||
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            54432  22345566789999999999876 57889998887766655443322222                 578899


Q ss_pred             eCCCCEEEEEe-CCCc---------------------------------EEEEECCCceeeeeee-----cccccCeeEE
Q 004270          234 SDGQPLLASGA-SSGV---------------------------------ISIWNLEKRRLQSVIR-----EAHDNAIISL  274 (764)
Q Consensus       234 ~d~~~~l~sg~-~dg~---------------------------------i~iwd~~~~~~~~~~~-----~~h~~~v~~l  274 (764)
                      |||+ .||... .+..                                 +.++|+.++.......     .....-+..+
T Consensus       182 PDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~  260 (465)
T d1xfda1         182 PDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV  260 (465)
T ss_dssp             TTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred             CCCC-eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence            9999 555442 2222                                 4455554443221111     0122246778


Q ss_pred             EEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCC----CeeEEEecCCCEE
Q 004270          275 HFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAP----PLCIRFYANGRHI  329 (764)
Q Consensus       275 ~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~----v~~i~~~~~~~~l  329 (764)
                      .|++++++++....  .+...++-++...+..+.+.... ....    -....|++||+.+
T Consensus       261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            99999876555432  23334444444444434333221 1221    2345788888754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=4.1e-06  Score=80.20  Aligned_cols=214  Identities=10%  Similarity=-0.028  Sum_probs=146.3

Q ss_pred             eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (764)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (764)
                      +.......+.+..|+..+.......+      +..+.++++.++|+++++ +.+ .+.++|..+++.........    .
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~~~~~~------~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~----~   99 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRKTVHAL------PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES----D   99 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEC------SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST----T
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEC------CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec----C
Confidence            33444455667777766655433222      256789999999877665 444 58899999887644322100    1


Q ss_pred             cccCcEEEEEECCCCCEEEEEeCC----CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccC
Q 004270          472 AHNGEVVGVACDSTNTLMISAGYH----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA  546 (764)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~  546 (764)
                      .....++.+.++|+|++.++...+    +.-.+|.+..++.......-.....++++++++.+..+ +..+.|+.|+++.
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence            123468899999999977765432    34566777777665555544667889999999866555 5578899998742


Q ss_pred             C--------eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEc-CCCCeEEEE
Q 004270          547 L--------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLATA  616 (764)
Q Consensus       547 ~--------~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~s-p~g~~lat~  616 (764)
                      .        .....+.+..+....+++..+|++.++.-..+.|..|| ++|+.+..+..+.+ +++++|- ||.+.|..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            1        12223334455678899999999887776788899999 67999999998754 9999996 677766655


Q ss_pred             Ee
Q 004270          617 HV  618 (764)
Q Consensus       617 ~~  618 (764)
                      +.
T Consensus       259 ta  260 (295)
T d2ghsa1         259 SA  260 (295)
T ss_dssp             EB
T ss_pred             EC
Confidence            44

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.47  E-value=5.5e-05  Score=72.06  Aligned_cols=230  Identities=13%  Similarity=0.043  Sum_probs=138.9

Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      -...|.+....+..+--..+.|..||..+++.. .+.  ....+.++++.+++.++++ +.+ .+..+|..+.  ..+.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg--~~~~l   93 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATG--VLTLH   93 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC--CEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccc--eeeEE
Confidence            345677654436666556789999999888654 232  3457889999999876665 444 4777765544  22333


Q ss_pred             EeccCC--CCCCeeEEEecCCCEEEEEeCC----CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          308 RFRSGH--SAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       308 ~~~~~h--~~~v~~i~~~~~~~~l~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                      ......  ...++.+.+.|+|++.++....    +.-.+|.+..++.....                             
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-----------------------------  144 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-----------------------------  144 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-----------------------------
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-----------------------------
Confidence            222111  1246777888888766654321    12233333222110000                             


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCcccc
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRG  460 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~  460 (764)
                                                              ........++++++++.+++. +..+.|..|++.......
T Consensus       145 ----------------------------------------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~  184 (295)
T d2ghsa1         145 ----------------------------------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP  184 (295)
T ss_dssp             ----------------------------------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred             ----------------------------------------eccCCcceeeecCCCceEEEeecccceeeEeeeccccccc
Confidence                                                    001456788999999976655 457789999875322111


Q ss_pred             eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe-ecCCEEEEEe
Q 004270          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGLLATVA  534 (764)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s-~~~~~la~~~  534 (764)
                      .-.........+..+...+++++.+|.+.++.-..+.|..|| ..++.+..+..+ ..+++++|- +|.+.|.+.+
T Consensus       185 ~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         185 TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            000000000123455688999999999888777788999999 568888998887 568999996 5666665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.36  E-value=2.1e-05  Score=74.66  Aligned_cols=99  Identities=14%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             EEeeC--CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC----CCcEEEEEecCCCCCc
Q 004270          231 AFSSD--GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDP  304 (764)
Q Consensus       231 ~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~  304 (764)
                      ..+||  |+.++++  .+|.|.+.|+.+++.... . .+.+.+...+|||||+.|+....    +....+|.++...+..
T Consensus         5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~L-t-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGSTRKI-V-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEE--ETTEEEEEETTTCCEEEE-E-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEE--eCCcEEEEECCCCCEEEE-e-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  9844444  356799999998876543 3 46677899999999998886542    2334566666554433


Q ss_pred             eeeEecc----CCCCCCeeEEEecCCCEEEEEe
Q 004270          305 RLLRFRS----GHSAPPLCIRFYANGRHILSAG  333 (764)
Q Consensus       305 ~~~~~~~----~h~~~v~~i~~~~~~~~l~s~~  333 (764)
                      +.+....    ..........|+|+|+.|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            3322111    1223456788999998887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.33  E-value=0.00043  Score=72.51  Aligned_cols=378  Identities=10%  Similarity=0.058  Sum_probs=200.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC----------CCe-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG----------SSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (764)
Q Consensus       152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----------~~i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (764)
                      .+|++++.++.|.-+|.++|+.+.++....          ..+ ..+.+.  ...+..++.|+.+.-.|..+|+.+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            478899999999999999999999885321          011 112222  3467788889999999999999987765


Q ss_pred             cc--CCCCE--EEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccc-----------------------
Q 004270          221 HS--MRGAV--TALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAH-----------------------  267 (764)
Q Consensus       221 ~~--~~~~v--~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h-----------------------  267 (764)
                      ..  ....+  +..-..-++  .+++++      ..|.|+-+|.++|+.+.......                       
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~--~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~  233 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             CccCCcceEEeecceEEEec--cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence            32  11111  111111133  345543      24689999999999887754110                       


Q ss_pred             -------ccCe-eEEEEecCCCEEEEEcCC-----------------CcEEEEEecCCCCCceeeEeccCCC-------C
Q 004270          268 -------DNAI-ISLHFFANEPVLMSASAD-----------------NSIKMWIFDTTDGDPRLLRFRSGHS-------A  315 (764)
Q Consensus       268 -------~~~v-~~l~~~~~~~~l~s~~~d-----------------~~i~vw~~~~~~~~~~~~~~~~~h~-------~  315 (764)
                             .+.+ ...++.++...++.....                 ..-.++-++...+..+-......|.       .
T Consensus       234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~  313 (573)
T d1kb0a2         234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (573)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence                   0111 123444554444433211                 1123344444443322222222221       2


Q ss_pred             CCeeEEEecCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270          316 PPLCIRFYANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (764)
Q Consensus       316 ~v~~i~~~~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (764)
                      +........++   ..++.++.+|.+.++|..+++..........                .....+             
T Consensus       314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~----------------~~~~~~-------------  364 (573)
T d1kb0a2         314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV----------------NWASGY-------------  364 (573)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC----------------SSEEEE-------------
T ss_pred             eeeecceecCCCceeeeeeccccceeEEecccccccccccccccc----------------cccccc-------------
Confidence            22223333344   3567778899999999888776544321100                000000             


Q ss_pred             eEeeeCCceEEEEEccc--eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270          393 VTCHMDTAQAYVWRLQN--FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (764)
Q Consensus       393 ~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (764)
                           +.....+.....  .......+ +.......-...+++|+...+++...+....+.................   
T Consensus       365 -----~~~~~~~~~~~~~~~~~~~~~~-pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~---  435 (573)
T d1kb0a2         365 -----DKHGKPIGIAAARDGSKPQDAV-PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ---  435 (573)
T ss_dssp             -----CTTSCEEECGGGGCTTSCEECS-SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT---
T ss_pred             -----ccccceeeeeeccccccceEEe-ecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccc---
Confidence                 000000000000  00000000 1001111123468889999999888887766665544332221110000   


Q ss_pred             ccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270          471 YAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (764)
Q Consensus       471 ~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~  549 (764)
                      .+... ......-.|..     ...-|.+.-||..+++.+...+...+...-..+-.+.++++|+.|+.++.+|.++|+.
T Consensus       436 ~g~~~~~~~~~~~~p~~-----~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         436 SGTGWNTAKFFNAEPPK-----SKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             GGGTCCCCEEECSSCCC-----SCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccccCCCC-----CCCcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            00000 00000000100     1122678899999999998888776655555666789999999999999999999999


Q ss_pred             EEEeecCCCCe-eEEEEcCCCc-EEEEEe
Q 004270          550 VRKFEGHTDRI-TDFCFSEDGK-WLLSSG  576 (764)
Q Consensus       550 ~~~~~~h~~~i-~~l~~s~dg~-~l~s~s  576 (764)
                      +.++.-..+.. .-+.|..||+ |++..+
T Consensus       511 LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         511 LWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            98887432211 1255666886 555433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.29  E-value=0.00068  Score=70.66  Aligned_cols=81  Identities=10%  Similarity=0.131  Sum_probs=61.8

Q ss_pred             CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe-eEEEEcCCCc-EEE
Q 004270          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLL  573 (764)
Q Consensus       496 g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~-~l~  573 (764)
                      |.+.-||+.+++.+.......+...-.++-.+.++++|+.||.++-+|.++|+.+-+++-..... .-+.+..||+ ||+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            57888999999999988877666555566678899999999999999999999998887433211 1256667886 655


Q ss_pred             EEe
Q 004270          574 SSG  576 (764)
Q Consensus       574 s~s  576 (764)
                      ..+
T Consensus       518 v~a  520 (560)
T d1kv9a2         518 IMA  520 (560)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.26  E-value=0.0011  Score=69.03  Aligned_cols=82  Identities=16%  Similarity=0.071  Sum_probs=60.7

Q ss_pred             CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC-CeeEEEEcCCCc-EE
Q 004270          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGK-WL  572 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~-~i~~l~~s~dg~-~l  572 (764)
                      .|.|.-+|+.+++.+.+.....+..+-.++..+.++++|+.|+.++-+|.++|+.+-++.-... .-.-+.|..||+ |+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            4789999999999998887765544444555688899999999999999999999988863321 122356677886 55


Q ss_pred             EEEe
Q 004270          573 LSSG  576 (764)
Q Consensus       573 ~s~s  576 (764)
                      ++..
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.17  E-value=0.00081  Score=70.14  Aligned_cols=162  Identities=16%  Similarity=0.195  Sum_probs=103.1

Q ss_pred             EEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEEEeC------CCcEEEEeCCCC
Q 004270           99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQ------EGSLQLWNISTK  171 (764)
Q Consensus        99 l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~~~~------dg~i~iwd~~~~  171 (764)
                      +++.+..++.++.||.+.--|.++++..    -....... ........|.-+.+.++++..      .|.|+-+|+.||
T Consensus       111 ~a~~~~~i~~~~~~g~l~alda~tG~~~----w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG  186 (571)
T d2ad6a1         111 LAYGAGQIVKKQANGHLLALDAKTGKIN----WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEE----EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             ceeeCCeEEEEeCCCcEEeeehhhhhhh----ccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCC
Confidence            4566778888888999888899998873    22221110 000011111111145777664      678999999999


Q ss_pred             eEEEEEcCCC-------------------------------------CCe-EEEEEcCCCCEEEEEEc------------
Q 004270          172 KKLYEFKGWG-------------------------------------SSI-SSCVSSPALDVVAVGCS------------  201 (764)
Q Consensus       172 ~~~~~~~~h~-------------------------------------~~i-~~~~~sp~~~~la~g~~------------  201 (764)
                      +.+..+....                                     ..+ ...++.++..++..+..            
T Consensus       187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g  266 (571)
T d2ad6a1         187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred             cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccc
Confidence            9999875321                                     112 23566777777776654            


Q ss_pred             ----CCeEEEEEccCCceEEEEeccCC--------CCEEEEEEeeCCC--CEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          202 ----DGKIHVHNVRYDEELVTFTHSMR--------GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       202 ----dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~l~fs~d~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                          ...+.-.|.++|+.+..+...+.        ..........+++  ..++.++.+|.+.++|.++++++...+
T Consensus       267 ~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~  343 (571)
T d2ad6a1         267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeec
Confidence                35688889999999988875321        1222223333443  256778899999999999999876544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=0.0018  Score=67.80  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE--EEEcCCCC-e
Q 004270          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-V  612 (764)
Q Consensus       536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~--l~~sp~g~-~  612 (764)
                      .|.+.-+|+.+++.+-+...+. ++..=..+..|..+++++.||.++-+|..+|+.+..++....+.+  +.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999988877543 233222344677888899999999999999999999998765332  67777884 6


Q ss_pred             EEEEEe
Q 004270          613 LATAHV  618 (764)
Q Consensus       613 lat~~~  618 (764)
                      +|....
T Consensus       544 v~i~ag  549 (582)
T d1flga_         544 LGVTVG  549 (582)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=0.00043  Score=65.15  Aligned_cols=229  Identities=11%  Similarity=0.059  Sum_probs=127.4

Q ss_pred             EEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC-C-----CcEEEEeCCC
Q 004270           99 LLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ-E-----GSLQLWNIST  170 (764)
Q Consensus        99 l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~-d-----g~i~iwd~~~  170 (764)
                      ++||  |++++-.+ +|.|.+.|+.+++.     +.+...........||||+  ++|+.... +     ..|.+++..+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-----~~Lt~~~~~~~~p~~SPDG--~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-----RKIVSNLGVINNARFFPDG--RKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-----EEEECSSSEEEEEEECTTS--SEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-----EEEecCCCcccCEEECCCC--CEEEEEEeeCCCCCceEEEEEEecC
Confidence            5678  99988775 67788889988776     3444455666777899999  77876532 2     2477888877


Q ss_pred             CeEEEEEc------CCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270          171 KKKLYEFK------GWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (764)
Q Consensus       171 ~~~~~~~~------~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (764)
                      ++..+...      ..........|+|+|+.|+.....      ..+...+...+......    .+.... .+.+++..
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~  152 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN----LGPATH-ILFADGRR  152 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC----SCSCSE-EEEETTEE
T ss_pred             CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec----CCccce-eeecCCCe
Confidence            77654321      112345678999999999876432      23555555544432211    222223 34455542


Q ss_pred             EEEEEeCCC-----------cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270          239 LLASGASSG-----------VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (764)
Q Consensus       239 ~l~sg~~dg-----------~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (764)
                      .++......           ................  .+........+.++. .+.....++.-.+|-++......+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~l  229 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV--DMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKH  229 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE--CCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccceeecc--CCccccceeeeeccc-cceecccccccceEEEeCCCCceEEe
Confidence            444332211           1122222222222222  233444555566553 34444445555556555444333332


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (764)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~  348 (764)
                      .   .+ .......|+|||+.|+... ++.|.++|+.+++.
T Consensus       230 t---~~-~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~  265 (281)
T d1k32a2         230 T---SF-TDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI  265 (281)
T ss_dssp             C---CC-CSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE
T ss_pred             e---cC-CCcccccCcCCCCEEEEEe-CCEEEEEECCCCCE
Confidence            2   22 1223346899999887644 67799999876643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.11  E-value=0.0017  Score=67.93  Aligned_cols=377  Identities=9%  Similarity=0.008  Sum_probs=194.3

Q ss_pred             CEEEEEeC-CCcEEEEeC-CCCeEEEEEcCCCC-----------CeEEEEEcCC----CCEEEEEEcCCeEEEEEccCCc
Q 004270          152 NKVIVGSQ-EGSLQLWNI-STKKKLYEFKGWGS-----------SISSCVSSPA----LDVVAVGCSDGKIHVHNVRYDE  214 (764)
Q Consensus       152 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~-----------~i~~~~~sp~----~~~la~g~~dg~i~iwd~~~~~  214 (764)
                      ..|++++. .+.+...|. ++|+.+.++.....           .-+.+++.++    ..+|+.++.|+.|.-.|.++|+
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            35666543 577888887 58999998753211           0123455443    3478889999999999999999


Q ss_pred             eEEEEeccCC---CCEEEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccc------------------
Q 004270          215 ELVTFTHSMR---GAVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAH------------------  267 (764)
Q Consensus       215 ~~~~~~~~~~---~~v~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h------------------  267 (764)
                      .+..+.....   ..+++--.--++  .+++|.      ..|.|+-+|+++|+++-.+....                  
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~~~--~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~  220 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVVKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             eeccccccccccccccccCCcEECC--eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence            9988863211   112211111133  355554      24899999999999987754110                  


Q ss_pred             ------------------cc-CeeEEEEecCCCEEEEEcCC----------------CcEEEEEecCCCCCceeeEeccC
Q 004270          268 ------------------DN-AIISLHFFANEPVLMSASAD----------------NSIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       268 ------------------~~-~v~~l~~~~~~~~l~s~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                                        .. .-..+++.+...++..+..+                .++...|.++.  +..-......
T Consensus       221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG--~~~W~~Q~~~  298 (596)
T d1w6sa_         221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG--EAKFGYQKTP  298 (596)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC--CEEEEEESST
T ss_pred             cccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccc--ccccccccee
Confidence                              00 11234555655555554332                22333444333  2222222222


Q ss_pred             CC-------CCCeeEEE-ecCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270          313 HS-------APPLCIRF-YANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (764)
Q Consensus       313 h~-------~~v~~i~~-~~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (764)
                      |.       ..+..+.. ..+|   ..++....+|.+.++|..+++.+.........               ......+.
T Consensus       299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~---------------~~~~~~d~  363 (596)
T d1w6sa_         299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV---------------NVFKSVDL  363 (596)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC---------------CSEEEECT
T ss_pred             ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccc---------------cccccccc
Confidence            32       12222222 1244   35777888999999998887655332110000               00000000


Q ss_pred             cccccccccceeEeeeCCceEEEEEccceee---cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVL---GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (764)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (764)
                      .                 ..--+++......   ......+.......-...+++|+..++++...+.............
T Consensus       364 ~-----------------~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~  426 (596)
T d1w6sa_         364 K-----------------TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK  426 (596)
T ss_dssp             T-----------------TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             c-----------------ccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccc
Confidence            0                 0000000000000   0000000000011123457888888888776654332211110000


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCe
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV  538 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~  538 (764)
                      ...          ...+.-......|.+..... -.-|.|.-||..+++.+.......+...-.++..+.++++|+.||.
T Consensus       427 ~g~----------~~~g~~~~~~~~~~g~~~~~-~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~  495 (596)
T d1w6sa_         427 AGQ----------FFVGATLNMYPGPKGDRQNY-EGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGY  495 (596)
T ss_dssp             TTS----------CCCCEEEEEEECTTSBTTTT-BCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE
T ss_pred             ccc----------cccccccccccCcccCcccC-CCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCe
Confidence            000          01111122222333211000 1126889999999999888777666555556667889999999999


Q ss_pred             EEEEEccCCeEEEEeecCCCC-eeEEEEcCCCc-EEEEE
Q 004270          539 IRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLLSS  575 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~dg~-~l~s~  575 (764)
                      ++-+|.++|+.+-++.-.... -.-+.|..||+ |++..
T Consensus       496 l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~  534 (596)
T d1w6sa_         496 LKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (596)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence            999999999999888643221 12245666886 55543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=0.0055  Score=55.41  Aligned_cols=259  Identities=15%  Similarity=0.193  Sum_probs=157.7

Q ss_pred             CCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270          159 QEGSLQLWNISTKKK-LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (764)
Q Consensus       159 ~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (764)
                      ...++.|.|+.++.. .+.--.    --+.-.+|..+.||.-+ ...+.++|+++.+.+..+...  .+|.-=.|-.+..
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~~~  115 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT  115 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEESSSSE
T ss_pred             CCceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC--CCcEEEEecCCCE
Confidence            345788999876553 322211    12445679888888876 468999999999999998874  5777778876654


Q ss_pred             CEEEEEeCCCcEEEEECCCc-eeeeeeecccc----cCeeEEEEecCCCEEEEEc---C----CCcEEEEEecCCCCCce
Q 004270          238 PLLASGASSGVISIWNLEKR-RLQSVIREAHD----NAIISLHFFANEPVLMSAS---A----DNSIKMWIFDTTDGDPR  305 (764)
Q Consensus       238 ~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~~---~----d~~i~vw~~~~~~~~~~  305 (764)
                        |+.-+ +..|+-|+++.. .+.+.+. -|.    ..|-.-..++++++++..|   .    .|.+.+|..+..     
T Consensus       116 --L~lVT-~taVYHW~~~g~s~P~k~fd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----  186 (327)
T d1utca2         116 --VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----  186 (327)
T ss_dssp             --EEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----
T ss_pred             --EEEEc-CCceEEEcccCCCCchhhhh-hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----
Confidence              55444 468999999653 4455554 332    4677777788888776544   1    366788876654     


Q ss_pred             eeEeccCCCCCCeeEEEecCC---CEEEEEe---CCCcEEEEEeecccc-cccccchhhhHHHhhccchhhhhccCceeE
Q 004270          306 LLRFRSGHSAPPLCIRFYANG---RHILSAG---QDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (764)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~~---~~l~s~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (764)
                      ..+.+.||...-..+.+..+.   +.++.+.   ..+.+++.++..... ...+..                        
T Consensus       187 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k------------------------  242 (327)
T d1utca2         187 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK------------------------  242 (327)
T ss_dssp             EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC------------------------
T ss_pred             cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc------------------------
Confidence            455566776543333332211   1222221   224566666544211 111100                        


Q ss_pred             eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (764)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (764)
                                                       .....+-+.....+-..++.+|+.-..+.+-+.-|.+++||+.++..
T Consensus       243 ---------------------------------k~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         243 ---------------------------------KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             ---------------------------------EEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             ---------------------------------eeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccE
Confidence                                             00111222333446778899999999999999999999999999988


Q ss_pred             cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (764)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v  498 (764)
                      +..-.        -....|..-+-+....-++....+|.|
T Consensus       290 i~~nR--------Is~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         290 IYMNR--------ISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEEE--------CCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEee--------cCCCceEEeccCCCCceEEEECCCCeE
Confidence            76543        333444444444444445555555554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=0.00081  Score=64.55  Aligned_cols=190  Identities=9%  Similarity=0.028  Sum_probs=132.1

Q ss_pred             EEEEecCCcEEEEECcCCcccceecCccccccc----------------------------------cccCcEEEEEECC
Q 004270          439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNY----------------------------------AHNGEVVGVACDS  484 (764)
Q Consensus       439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~----------------------------------~h~~~v~~l~~~~  484 (764)
                      +.+|+..|.|+++-+.+++.+..+.........                                  +.... ..+.+..
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH-P~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH-VHMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC-EEEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC-CcccccC
Confidence            457888999999999998887766533322000                                  00011 1344433


Q ss_pred             ---CCCEEEEEe-CCCeEEEEECCCCCeeeeEecC--cceEEEEEee--cCCEEEEEeCC------------------Ce
Q 004270          485 ---TNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR--VNGLLATVADD------------------LV  538 (764)
Q Consensus       485 ---~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~--~~~~la~~~~d------------------~~  538 (764)
                         ||++++... .+.+|-+-|+++.+....+...  ..+..+...+  .-.|++.++.+                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               788887776 6789999999999987755543  6667666655  45577776653                  24


Q ss_pred             EEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC--------------------------------------Cc
Q 004270          539 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD--------------------------------------GS  580 (764)
Q Consensus       539 i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d--------------------------------------g~  580 (764)
                      +.++|.++.+...+..-. +....+++++||+|+++.+.+                                      +-
T Consensus       175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            678899999887776633 356789999999999988743                                      22


Q ss_pred             EEEEEcCc---cceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270          581 LRIWDVIL---ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (764)
Q Consensus       581 i~iwd~~~---~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~  630 (764)
                      +.+-|..+   ...+..+..+.....+.++|||+++++++.-..++.+.|++.
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            34444432   134455666677889999999999999998777899999864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.0069  Score=55.83  Aligned_cols=238  Identities=11%  Similarity=-0.007  Sum_probs=139.9

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (764)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (764)
                      ...|+-.++.+......+.  ....+.+++|.+.++.|.-+. ..+.|.--+++..................+..+++.+
T Consensus         9 ~~~I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~   86 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (266)
T ss_dssp             BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CCeEEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence            3468889998766554443  455678999998887776654 4566666665543322222222333445678899988


Q ss_pred             CCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270          325 NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (764)
Q Consensus       325 ~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (764)
                      .+..|..+ ...+.|.+.++........+.                                                  
T Consensus        87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~--------------------------------------------------  116 (266)
T d1ijqa1          87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------------------------------------------------  116 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEE--------------------------------------------------
T ss_pred             ccceEEEEecCCCEEEeEecCCceEEEEEc--------------------------------------------------
Confidence            66555554 455667777764322111000                                                  


Q ss_pred             EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (764)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (764)
                                        ........++++|...++....  ..+.|...++..........        ..-....+++
T Consensus       117 ------------------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~--------~~~~~p~gl~  170 (266)
T d1ijqa1         117 ------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGIT  170 (266)
T ss_dssp             ------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSCSCEEEEE
T ss_pred             ------------------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc--------cccceeeEEE
Confidence                              1125578889998777776654  33567777776544333221        2335678999


Q ss_pred             ECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEeecC
Q 004270          482 CDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGH  556 (764)
Q Consensus       482 ~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~~h  556 (764)
                      +++.++.|.-+ ...+.|...++............   .....+++.  +..|... ..++.|...+..+++....+...
T Consensus       171 iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             eeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            99987766655 56688999998766544443332   234456655  4455544 46678888887777666655544


Q ss_pred             CCCeeEE
Q 004270          557 TDRITDF  563 (764)
Q Consensus       557 ~~~i~~l  563 (764)
                      ...+.++
T Consensus       249 ~~~p~~i  255 (266)
T d1ijqa1         249 LLSPEDM  255 (266)
T ss_dssp             CSCCCCE
T ss_pred             CCCceEE
Confidence            4434433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.95  E-value=0.017  Score=60.05  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC-eeEEEEcCCCc-EE
Q 004270          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WL  572 (764)
Q Consensus       495 dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~dg~-~l  572 (764)
                      .|.|.-+|+.+++.+.......+...-.++..+.++++|+.||.++-+|.++|+.+-+++-.... -.-+.|..||+ |+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            47888999999999998887766665556678889999999999999999999999988743221 12267778995 55


Q ss_pred             EEE
Q 004270          573 LSS  575 (764)
Q Consensus       573 ~s~  575 (764)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.94  E-value=0.00091  Score=69.67  Aligned_cols=83  Identities=11%  Similarity=0.058  Sum_probs=59.1

Q ss_pred             CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE--EEEcCCCC-eE
Q 004270          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VL  613 (764)
Q Consensus       537 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~--l~~sp~g~-~l  613 (764)
                      |.+.-+|+.+++.+-+.... .+...=.++-.|.+++.++.||.++-+|..+|+.+..++....+.+  +.+..+|+ |+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56888999999988776532 2222222333566888899999999999999999999988765433  55666885 66


Q ss_pred             EEEEeCC
Q 004270          614 ATAHVDQ  620 (764)
Q Consensus       614 at~~~d~  620 (764)
                      ++....+
T Consensus       517 ~v~aG~g  523 (560)
T d1kv9a2         517 AIMAGWG  523 (560)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            6655444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.90  E-value=0.0084  Score=62.35  Aligned_cols=193  Identities=12%  Similarity=0.108  Sum_probs=108.1

Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecC-------CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-------DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY  175 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~  175 (764)
                      +..|+.++.++.|.-.|..+++.....-......       .......++..    .+++.++.++.+.-.|..+|+.+.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~v~~~t~~g~l~alda~tG~~~W  152 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK----GKVYVGAWDGRLIALDAATGKEVW  152 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET----TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEEC----CcEEEEecccceeeecccccccee
Confidence            4566777778888888888887733210000000       00111122222    468899999999999999999998


Q ss_pred             EEcCCCCCe--EEEEEcC--CCCEEEEEEc------CCeEEEEEccCCceEEEEeccCC---------------------
Q 004270          176 EFKGWGSSI--SSCVSSP--ALDVVAVGCS------DGKIHVHNVRYDEELVTFTHSMR---------------------  224 (764)
Q Consensus       176 ~~~~h~~~i--~~~~~sp--~~~~la~g~~------dg~i~iwd~~~~~~~~~~~~~~~---------------------  224 (764)
                      .........  ..+.-.|  .+..+++++.      .|.|+-+|.++|+.+.++.....                     
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~  232 (573)
T d1kb0a2         153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (573)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence            775422111  1111111  1345555543      47899999999999988753210                     


Q ss_pred             ---------CCE-EEEEEeeCCCCEEEEEeC-------------------CCcEEEEECCCceeeeeeecccc-------
Q 004270          225 ---------GAV-TALAFSSDGQPLLASGAS-------------------SGVISIWNLEKRRLQSVIREAHD-------  268 (764)
Q Consensus       225 ---------~~v-~~l~fs~d~~~~l~sg~~-------------------dg~i~iwd~~~~~~~~~~~~~h~-------  268 (764)
                               +.+ ...++.++.. ++..+..                   ...|.-.|+++++.....+..|.       
T Consensus       233 ~~~~~~~~G~~vW~~~s~D~~~g-~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~  311 (573)
T d1kb0a2         233 GKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (573)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             CceeecCCCCcccccceEchhhC-eeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccc
Confidence                     011 1244555544 4433221                   23577778888887766653221       


Q ss_pred             -cCeeEEEEecCC---CEEEEEcCCCcEEEEEecCC
Q 004270          269 -NAIISLHFFANE---PVLMSASADNSIKMWIFDTT  300 (764)
Q Consensus       269 -~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~  300 (764)
                       .+........++   ..++.++.+|.+.++|..+.
T Consensus       312 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tG  347 (573)
T d1kb0a2         312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (573)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cceeeecceecCCCceeeeeeccccceeEEeccccc
Confidence             112222222233   35677778888888876554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.90  E-value=0.0025  Score=63.01  Aligned_cols=117  Identities=7%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             CeEEEEEcCCCCEEEEEEcC-----C------eEEEEEccCCceE--EEEeccCCCCEEEEEEeeCCCCEEEEEeCC-Cc
Q 004270          183 SISSCVSSPALDVVAVGCSD-----G------KIHVHNVRYDEEL--VTFTHSMRGAVTALAFSSDGQPLLASGASS-GV  248 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~d-----g------~i~iwd~~~~~~~--~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-g~  248 (764)
                      ++...+...+|++++.|+.+     +      .+.+||..+++-.  ......+.......++.++|. +++.|+.+ ..
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcc
Confidence            34445556677777777742     1      3779999987632  223333233345667889998 77777644 68


Q ss_pred             EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC------CcEEEEEecCC
Q 004270          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD------NSIKMWIFDTT  300 (764)
Q Consensus       249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------~~i~vw~~~~~  300 (764)
                      +.+||..+..-...-.......-.+.+..+|+++++.++.+      +.+.+||..+.
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            99999988755433221122233467778899998888753      35777876544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=0.0063  Score=55.04  Aligned_cols=274  Identities=12%  Similarity=0.187  Sum_probs=159.5

Q ss_pred             ceeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEE--ECCeEEEE
Q 004270            7 YKAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNHIAVV   80 (764)
Q Consensus         7 ~r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a--~g~~i~vw   80 (764)
                      +..+|.....+.|.-.+..++.+++.-.    ..++.|-|..+...+...+-   .-.+.-++|....+|  +|..+.+|
T Consensus        12 L~~~Gi~~~~i~f~~~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALrag~~LQiF   88 (327)
T d1utca2          12 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIF   88 (327)
T ss_dssp             GGGGTCCGGGCSTTTEECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEETTEEEEE
T ss_pred             hhhcCCCccccccccEEEecCCEEEEEeccCCCceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEecCCeEEEE
Confidence            3455665566666655555555554333    35789999987543222111   112333566644443  37779999


Q ss_pred             ecCc--eEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCC----ccccEEEEeCCCCCCE
Q 004270           81 KRAH--QVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD----KFTPTCIMHPDTYLNK  153 (764)
Q Consensus        81 ~~~~--~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~  153 (764)
                      +...  +++...- ..+|.-..| +.+.|+-.+ +..|.-|++++...   |.+-++.+.    ..+..-..+++.  +.
T Consensus        89 nletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~---P~k~fdR~~~L~~~QIInY~~d~~~--kW  161 (327)
T d1utca2          89 NIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ--KW  161 (327)
T ss_dssp             ETTTTEEEEEEEC-SSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTS--CE
T ss_pred             ehhHhhhhceEEc-CCCcEEEEecCCCEEEEEc-CCceEEEcccCCCC---chhhhhhcccccCceEEEEEECCCC--CE
Confidence            9754  3333332 335655555 677777776 67799999965432   344444333    233334455555  55


Q ss_pred             EEEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC---CEEEEEEc---CCeEEEEEccCCc------
Q 004270          154 VIVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL---DVVAVGCS---DGKIHVHNVRYDE------  214 (764)
Q Consensus       154 l~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~---~~la~g~~---dg~i~iwd~~~~~------  214 (764)
                      ++..+       -.|.+++|..+ .+.-+.++||.+.-..+.+.-+.   ++++.+..   .+.++|.++....      
T Consensus       162 ~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f  240 (327)
T d1utca2         162 LLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  240 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred             EEEEeEecCCCceeEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence            44321       23678999974 45667788885544444332211   23443322   2678888886521      


Q ss_pred             --eEEEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270          215 --ELVTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (764)
Q Consensus       215 --~~~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  289 (764)
                        ....+..+   ..+-..++..++.-. ++..-+.-|.|.+||++++.++..-+ -....|...+-..+..-++....+
T Consensus       241 ~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nR-Is~~~iF~~a~~~~~~Gi~~VNr~  318 (327)
T d1utca2         241 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRK  318 (327)
T ss_dssp             CCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETT
T ss_pred             cceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEee-cCCCceEEeccCCCCceEEEECCC
Confidence              11111111   123456777777665 78888999999999999999988877 455666655555555556666666


Q ss_pred             CcEE
Q 004270          290 NSIK  293 (764)
Q Consensus       290 ~~i~  293 (764)
                      |.|.
T Consensus       319 GqVl  322 (327)
T d1utca2         319 GQVL  322 (327)
T ss_dssp             SEEE
T ss_pred             CeEE
Confidence            6554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.86  E-value=0.00076  Score=64.75  Aligned_cols=189  Identities=11%  Similarity=0.077  Sum_probs=128.6

Q ss_pred             cCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC--CCCCEEEEEeCC---------------
Q 004270          434 ACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGYH---------------  495 (764)
Q Consensus       434 ~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d---------------  495 (764)
                      +||+++++.. .+++|.+.|+.+.+.......       .....+.++...  |+-.+++..+.+               
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-------Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec-------CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence            3899998887 567999999998887664431       334455666654  455677766653               


Q ss_pred             ---CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---------------eEEEEEc-------------
Q 004270          496 ---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFDV-------------  544 (764)
Q Consensus       496 ---g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---------------~i~v~d~-------------  544 (764)
                         +.+.+.|..+.+....+........+.++++|+++++.+.+.               .+.+++.             
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             hcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence               236788999999888888888888999999999999987531               2344443             


Q ss_pred             ----------cCC---eEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCcc------------ceEEEEeeC
Q 004270          545 ----------VAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------------RQIDAIHVD  598 (764)
Q Consensus       545 ----------~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~------------~~~~~~~~~  598 (764)
                                .+.   ..++.+.-. .....+.++|||+|+++++ .+.++.|+|++.-            .........
T Consensus       250 eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             EeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence                      211   111112111 2245689999999998776 6889999999631            222333334


Q ss_pred             CceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270          599 VSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (764)
Q Consensus       599 ~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~  631 (764)
                      -....-+|...|.-..|--.|+ .|--|++...
T Consensus       329 lgPLht~fd~~g~aytslfids-~v~kw~~~~~  360 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDS-QVVKWNIEDA  360 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTT-EEEEEEHHHH
T ss_pred             cCccccccCCCceEEEEeeccc-eEEEEecchh
Confidence            4578889998886555555788 5999998644

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=0.012  Score=54.08  Aligned_cols=239  Identities=13%  Similarity=0.051  Sum_probs=143.0

Q ss_pred             CcEEEEECCCceee-----eeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270          247 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (764)
Q Consensus       247 g~i~iwd~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (764)
                      +.|+-.+++.....     ..+. .+...+.+++|.+..+.+..+ ..++.|+..+++...  ...+  .......+..+
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v--~~~~~~~p~~i   84 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTI--IRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEE--ECTTCCCEEEE
T ss_pred             CeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEE--EEeccccccEE
Confidence            56777776544321     1222 344567889999877766665 445777777766442  1222  22233567899


Q ss_pred             EEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270          321 RFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (764)
Q Consensus       321 ~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (764)
                      ++..-+..|+.+ ...+.|.+.++........+                                               
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-----------------------------------------------  117 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----------------------------------------------  117 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------------------------------------------
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEe-----------------------------------------------
Confidence            998755566544 45567777765432211000                                               


Q ss_pred             ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccCc
Q 004270          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (764)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (764)
                                        .   .....+..++++|...+++.....   +.|...++..........        ..-..
T Consensus       118 ------------------~---~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~--------~~~~~  168 (263)
T d1npea_         118 ------------------D---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--------DNLGL  168 (263)
T ss_dssp             ------------------C---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC--------TTCSC
T ss_pred             ------------------c---ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee--------ecccc
Confidence                              0   112567889999988888765433   236555665443322221        23346


Q ss_pred             EEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEee
Q 004270          477 VVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFE  554 (764)
Q Consensus       477 v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~  554 (764)
                      ..++++++.++.|.-+ ...+.|...++........+........+++.  +..|... ...+.|...|..+++.+..+.
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            7899999887777555 46788999998866554444443444567665  5555554 467899999999998877664


Q ss_pred             c-CCCCeeEEEEcCC
Q 004270          555 G-HTDRITDFCFSED  568 (764)
Q Consensus       555 ~-h~~~i~~l~~s~d  568 (764)
                      . .......++..++
T Consensus       247 ~~~~~~~~gi~v~~~  261 (263)
T d1npea_         247 PHKQTRLYGITIALS  261 (263)
T ss_dssp             CSSCCCCCCEEEECS
T ss_pred             CCCCCCcceEEEeCC
Confidence            3 3344556666543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.83  E-value=0.0059  Score=60.20  Aligned_cols=118  Identities=12%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             CEEEEEEeeCCCCEEEEEeCC-----C------cEEEEECCCceeeee--eecccccCeeEEEEecCCCEEEEEcCC-Cc
Q 004270          226 AVTALAFSSDGQPLLASGASS-----G------VISIWNLEKRRLQSV--IREAHDNAIISLHFFANEPVLMSASAD-NS  291 (764)
Q Consensus       226 ~v~~l~fs~d~~~~l~sg~~d-----g------~i~iwd~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~  291 (764)
                      .+.......+|+ +++.|+.+     +      .+.+||..+++-...  ....|.....+..+.+++.+++.|+.+ ..
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            344444455777 77777642     1      367999998754332  222344445567888999999888765 68


Q ss_pred             EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC------CcEEEEEeeccc
Q 004270          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD------RAFRLFSVIQDQ  347 (764)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d------g~i~i~d~~~~~  347 (764)
                      +.+||..+..  ......+.. ...-...+..+||+.++.++.+      ..+.+||..+.+
T Consensus       100 ~~~yd~~~~~--w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         100 TSLYDSSSDS--WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEEGGGTE--EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeEecCccCc--ccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            8999876542  222222211 1223456777899998888753      357778776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.81  E-value=0.0073  Score=62.92  Aligned_cols=157  Identities=20%  Similarity=0.280  Sum_probs=97.4

Q ss_pred             CEEEEEecCCcEEEEEccCCcccccceeeEecCC-ccccEEEEeCCCCCCEEEEEeC------CCcEEEEeCCCCeEEEE
Q 004270          104 EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQ------EGSLQLWNISTKKKLYE  176 (764)
Q Consensus       104 ~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~  176 (764)
                      .+++.++.|+.|.--|..+++.    +-...... ........+|.-+.++++++..      .|.|+-+|++||+++.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~----~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGET----VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCE----EEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCce----eccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            3677777788888778888877    33322111 0001111112112256777754      48899999999999998


Q ss_pred             EcCCC-------------------------------------C-CeEEEEEcCCCCEEEEEEcC----------------
Q 004270          177 FKGWG-------------------------------------S-SISSCVSSPALDVVAVGCSD----------------  202 (764)
Q Consensus       177 ~~~h~-------------------------------------~-~i~~~~~sp~~~~la~g~~d----------------  202 (764)
                      +....                                     . .-..+++.+...++..+..+                
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence            75211                                     1 12244667777777766432                


Q ss_pred             CeEEEEEccCCceEEEEeccCCC--------CEEEEEE-eeCCC--CEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          203 GKIHVHNVRYDEELVTFTHSMRG--------AVTALAF-SSDGQ--PLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~--------~v~~l~f-s~d~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      ..|.-.|+++|+.+..+...+..        ....+.. ..+|+  ..++....+|.+.++|..+|+++....
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence            45888999999999888753221        1111221 12332  367888999999999999999876544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.017  Score=52.86  Aligned_cols=181  Identities=10%  Similarity=0.011  Sum_probs=112.3

Q ss_pred             CCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270          160 EGSLQLWNISTKK-----KLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (764)
Q Consensus       160 dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs  233 (764)
                      .+.|+-.+++...     ....+..+...+.+++|.+..+.|.... .++.|...++..+.....+... ...+..+++.
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-~~~p~~iAvD   87 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec-cccccEEEEe
Confidence            3457666664332     1122333345678899998888887765 4577888888755544444332 4578999998


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccC
Q 004270          234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSG  312 (764)
Q Consensus       234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~  312 (764)
                      .-+..+.++-...+.|.+.++........+. .....+..+++.|...+++.... .+..+++..+........+.  ..
T Consensus        88 ~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~--~~  164 (263)
T d1npea_          88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--QD  164 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--CT
T ss_pred             ccCCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee--ee
Confidence            7666355566677899999987655433333 33467889999997776665433 23456766554332222221  22


Q ss_pred             CCCCCeeEEEecCCCEEEEE-eCCCcEEEEEee
Q 004270          313 HSAPPLCIRFYANGRHILSA-GQDRAFRLFSVI  344 (764)
Q Consensus       313 h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~  344 (764)
                      .-..+..+++.+.++.|+.+ ...+.|...++.
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            33466889999877777655 345667666653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.64  E-value=0.014  Score=58.32  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             EEEEEEeeCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-------------
Q 004270          227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-------------  289 (764)
Q Consensus       227 v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-------------  289 (764)
                      +...+++||++.++++-+.+|    .|+++|+.+++.+....  .......+.|.+|+..|+....+             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            445678999995554544444    69999999998765332  12223678999999987765432             


Q ss_pred             ---CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC---CCcEEEEEe
Q 004270          290 ---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSV  343 (764)
Q Consensus       290 ---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~i~i~d~  343 (764)
                         ..|..|.+.+......++.........+..+..+.++++++....   ++...+|-+
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence               235555554443322333322222334556677888888764332   333445543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.046  Score=50.00  Aligned_cols=187  Identities=9%  Similarity=-0.034  Sum_probs=113.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCc---eEEEEeccCCCCEE
Q 004270          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDE---ELVTFTHSMRGAVT  228 (764)
Q Consensus       153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~  228 (764)
                      +|+.+.. ..|+..++.+.+....+.+ ...+.+++|.+..+.|.... ..+.|.-.++....   ....+.......+.
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~~-~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeCC-CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            3444443 4588899977655444444 56778999999888887765 34667666664321   12222222235577


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE
Q 004270          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR  308 (764)
Q Consensus       229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  308 (764)
                      .+++.+.+..+..+-...+.|.+.++........+. ........++..|...+|........-+++...........+ 
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l-  158 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-  158 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc-
Confidence            899987666466666677899999998766554444 455678899999976666655433333444444332222222 


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEee
Q 004270          309 FRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVI  344 (764)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~  344 (764)
                       ....-..+..+++.+.++.|+.+ ...+.|...++.
T Consensus       159 -~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -cccccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence             22334567899999877766665 445666666653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.096  Score=51.88  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             CeEEEEEcCCCCEEEEEEc-C----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC------------
Q 004270          183 SISSCVSSPALDVVAVGCS-D----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS------------  245 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~-d----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~------------  245 (764)
                      .+..+++||+++++|.+-. +    ..++++|+.+++.+......  .....++|.+|++.++.+.-.            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3456688999999986532 2    46999999999876533221  223578999999944444321            


Q ss_pred             ---CCcEEEEECCCceeee--eeec-ccccCeeEEEEecCCCEEEEEc---CCCcEEEEEecC
Q 004270          246 ---SGVISIWNLEKRRLQS--VIRE-AHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDT  299 (764)
Q Consensus       246 ---dg~i~iwd~~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~l~s~~---~d~~i~vw~~~~  299 (764)
                         ...|..+.+.+.....  .+.. .....+..+..++++++++...   .+....+|.++.
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~  266 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL  266 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeC
Confidence               1257888887763322  2221 1223466777889998776432   244556665543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.72  E-value=0.25  Score=46.56  Aligned_cols=191  Identities=15%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             eEEEEEccCCCEEEEEec------------CCcEEEEECcCCcccceecCccccccccccCcEEEEEE--CCCCC-EEEE
Q 004270          427 VKACTISACGNFAVLGTA------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DSTNT-LMIS  491 (764)
Q Consensus       427 v~~~~~s~~g~~l~~g~~------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~-~l~s  491 (764)
                      ...+++.|+|..+++.+.            .|.+.++|+.+...................-...++.+  .++++ +|+.
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446788888877665532            48999999887544332211000000011112233333  45665 3444


Q ss_pred             Ee---CCCeEEEEECCCCCe--e--eeEecC--cceEEEEEeecCCEEEEEeC---------------CCeEEEEEccCC
Q 004270          492 AG---YHGDIKVWDFKGRDL--K--SRWEVG--CSLVKIVYHRVNGLLATVAD---------------DLVIRLFDVVAL  547 (764)
Q Consensus       492 ~~---~dg~v~iwd~~~~~~--~--~~~~~~--~~i~~~~~s~~~~~la~~~~---------------d~~i~v~d~~~~  547 (764)
                      ..   ...+|.+|++.....  .  .++...  .....+++..++.++++-..               -+...+|..+.+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   456788888764432  1  222222  55789999999988887421               123455555544


Q ss_pred             eEEEEeecCCCCeeEEEEcCCCcEEEEE-eCCCcEEEEEcCccc---eEEEEeeCCceEEEEEcC-CCCeEEEEEe
Q 004270          548 RMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILAR---QIDAIHVDVSITALSLSP-NMDVLATAHV  618 (764)
Q Consensus       548 ~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~sp-~g~~lat~~~  618 (764)
                      +...... .-..-+.|+++||+++|+.+ +..+.|++|++....   ....+..+..+-.+.+.+ +|.+.+.++.
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            4332233 23457899999999877655 467889999987543   233445566688899976 5555555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.45  E-value=0.33  Score=45.58  Aligned_cols=122  Identities=18%  Similarity=0.292  Sum_probs=83.3

Q ss_pred             cEEEEEE--CCC-CC-EEEEEeCCCeEEEEECC---CC----CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270          476 EVVGVAC--DST-NT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (764)
Q Consensus       476 ~v~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~  544 (764)
                      .+.++|+  ++. +. +++....+|.+..|.+.   .+    +.++.+.....+..+.+..+.+.|.++-++..|+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4667776  664 44 45667788999888763   22    45667777789999999999999999999888877776


Q ss_pred             c-----CCeEEEEeec--CCCCeeEEEEc--CCCc-EEE-EEeCCCcEEEEEcCc-cceEEEEee
Q 004270          545 V-----ALRMVRKFEG--HTDRITDFCFS--EDGK-WLL-SSGMDGSLRIWDVIL-ARQIDAIHV  597 (764)
Q Consensus       545 ~-----~~~~~~~~~~--h~~~i~~l~~s--~dg~-~l~-s~s~dg~i~iwd~~~-~~~~~~~~~  597 (764)
                      +     .+..+....+  ..+.+..|+.-  .++. ||+ |.-.+++..|||..+ .+.+..|+.
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            4     2233433332  34567777653  2322 554 444678999999876 466766653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.64  E-value=0.66  Score=43.43  Aligned_cols=198  Identities=13%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             cEEEEeCCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC------CCCEEEEEEc--C--CeEEEEE
Q 004270          141 PTCIMHPDT-YLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP------ALDVVAVGCS--D--GKIHVHN  209 (764)
Q Consensus       141 ~~~~~~p~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp------~~~~la~g~~--d--g~i~iwd  209 (764)
                      ..+.++|.. ....++.....+-|.+||+ .|+.+..+.  .+.+..+..-.      ...-+++++.  +  .+|.+|.
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            344455542 1145666666667999998 588888775  35666665442      2223555553  2  3688888


Q ss_pred             ccC-CceEEEEeccC------CCCEEEEEE--eeC-CCCEEEEEeCCCcEEEEECC---Cc----eeeeeeecccccCee
Q 004270          210 VRY-DEELVTFTHSM------RGAVTALAF--SSD-GQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAII  272 (764)
Q Consensus       210 ~~~-~~~~~~~~~~~------~~~v~~l~f--s~d-~~~~l~sg~~dg~i~iwd~~---~~----~~~~~~~~~h~~~v~  272 (764)
                      +.. ...+..+....      ...+..+++  ++. |..++++...+|.+..|.+.   .+    +.+..+.  -...+.
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~E  183 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTE  183 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccc
Confidence            763 33344333210      124666776  554 54456677788999888763   23    3333443  456788


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEEecC--CCCC-ceeeEecc--CCCCCCeeEEEec--CCC-EEE-EEeCCCcEEEEEe
Q 004270          273 SLHFFANEPVLMSASADNSIKMWIFDT--TDGD-PRLLRFRS--GHSAPPLCIRFYA--NGR-HIL-SAGQDRAFRLFSV  343 (764)
Q Consensus       273 ~l~~~~~~~~l~s~~~d~~i~vw~~~~--~~~~-~~~~~~~~--~h~~~v~~i~~~~--~~~-~l~-s~~~dg~i~i~d~  343 (764)
                      .|.+.+....|+.+-.+.-  +|.+..  .... ...+....  .....+..++...  ++. +|+ |.-.+++..+||.
T Consensus       184 GCVvDde~~~LyisEE~~G--iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             EEEEETTTTEEEEEETTTE--EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             eEEEeCCCCcEEEecCccc--eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            9999998888988877654  565543  2222 22232222  2467788888764  322 444 4446788999997


Q ss_pred             ec
Q 004270          344 IQ  345 (764)
Q Consensus       344 ~~  345 (764)
                      ..
T Consensus       262 ~~  263 (353)
T d1h6la_         262 QG  263 (353)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.65  Score=44.02  Aligned_cols=172  Identities=12%  Similarity=0.037  Sum_probs=92.7

Q ss_pred             cceEEEEEeCC-eEEEEECC-eEEEEecC-------------ceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEcc
Q 004270           57 KKIRALASYRD-YTFAAYGN-HIAVVKRA-------------HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFK  121 (764)
Q Consensus        57 ~~I~~~~~~~~-~~~~a~g~-~i~vw~~~-------------~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~  121 (764)
                      ....-+|+++. |.++|+|. .+.|....             ......  .-..|..++++++.|+... ++.+..++..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d~l~v~~-~~~l~~~~~~  113 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGDQVLVST-RNALYSLDLE  113 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETTEEEEEE-SSEEEEEESS
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCCEEEEEe-CCCEEEEEee
Confidence            45667888875 56655544 47776521             111111  1236888999999877765 5667777776


Q ss_pred             CCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-----CCCCeEEEEEcCCCCEE
Q 004270          122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISSCVSSPALDVV  196 (764)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~sp~~~~l  196 (764)
                      .-..    .................|    +.+++...+|.+.++++..++......+     ..+.+.+++|++.|..+
T Consensus       114 ~l~~----~~~~~~~~~~~~~~~~~p----~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         114 ELSE----FRTVTSFEKPVFQLKNVN----NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             STTC----EEEEEECSSCEEEEEECS----SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             cccc----ccccccccccccceecCC----ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            5433    222222223333444444    4577788889999999988865433221     23556677777766666


Q ss_pred             EEEEcCCeEEEE-EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270          197 AVGCSDGKIHVH-NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (764)
Q Consensus       197 a~g~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s  242 (764)
                      +++..++ ..+- ++.....+... ......|.++.|..+.. ++++
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~-F~vv  229 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQD-FLAV  229 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSE-EEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCC-cCCCcceeEEEEecCce-EEEE
Confidence            6653221 1111 11100000000 01134688999986665 4443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=93.86  E-value=1.6  Score=39.36  Aligned_cols=240  Identities=11%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             CCeEEEEecCC-CeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEeCCEEEEEec
Q 004270           35 GKAFHIYNCAK-LNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLFGEHILSIDI  111 (764)
Q Consensus        35 ~~~i~iwd~~~-~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~g~~l~s~~~  111 (764)
                      .-+|..|-... .....+.......|..++.......+...++|+.|-...  ++..-......|..++.-..+.+... 
T Consensus         3 ~~sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~~h~~al~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al~-   81 (273)
T d1jtdb_           3 ATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-   81 (273)
T ss_dssp             CSEEEEESSCCSSSTTCCCGGGSSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEEE-
T ss_pred             CCEEEEECCCCCCCceeccccCCCCcEEEEccCCEEEEEECCEEEEEeCCCCCceeeeecccccceEEecCCCceeeee-
Confidence            35678886443 222223334466799998877766666677799995422  23223334456777776555555554 


Q ss_pred             CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC
Q 004270          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP  191 (764)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  191 (764)
                      ||.+..|.....-....+..    ....+..+.....    ..+. -.|+.+..|.-...............|..++-..
T Consensus        82 dg~v~~wG~~~~gq~~~~~~----~~~~~~~i~~~~~----~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~  152 (273)
T d1jtdb_          82 DGEVIAWGGNEDGQTTVPAE----ARSGVDAIAAGAW----ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV  152 (273)
T ss_dssp             TTEEEEEECCTTSTTCCCGG----GGSSCCEEEEETT----EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred             eeeeeccCCCcceeeccccc----cccceeEEeeecc----cccc-cccccceecccCCCCceeeeccCCceEEEEeccc
Confidence            89999998654322111100    0111222222221    2222 2478888886433221111111123444443322


Q ss_pred             CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 004270          192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI  271 (764)
Q Consensus       192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v  271 (764)
                        ..+ ....++.+..|.......... .......|..++...  .+.++ -. ||.|+.|=......+..-. .....|
T Consensus       153 --~~~-~~~~~g~~~~~G~~~~g~~~~-~~~~~~~v~~Is~G~--~h~~~-l~-dG~v~~WG~n~~Gql~~~~-~~~~~v  223 (273)
T d1jtdb_         153 --YTA-LAVKNGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGI--FHSLA-LK-DGKVIAWGDNRYKQTTVPT-EALSGV  223 (273)
T ss_dssp             --SEE-EEEETTEEEEEECCTTSTTSC-CGGGSSSEEEEEECS--SEEEE-EE-TTEEEEEECCTTSTTCCCG-GGGSSC
T ss_pred             --eee-eeecccceeEeecccCCcccc-cccccCCccceeccc--eeeEE-Ee-cCcEEEcCCCCCCccCCCc-cCCCCc
Confidence              222 234578888886543322211 111245677776532  21233 23 7899999543321111111 233457


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEE
Q 004270          272 ISLHFFANEPVLMSASADNSIKMWI  296 (764)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~  296 (764)
                      ..++-.... .++.  .|+.|..|=
T Consensus       224 ~~I~~G~~~-~~~l--~~g~v~~WG  245 (273)
T d1jtdb_         224 SAIASGEWY-SLAL--KNGKVIAWG  245 (273)
T ss_dssp             CEEEECSSC-EEEE--ETTEEEEES
T ss_pred             EEEEeCcce-EEEE--ECCEEEEEC
Confidence            777654332 3433  378999993

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.45  E-value=3  Score=38.76  Aligned_cols=98  Identities=10%  Similarity=0.013  Sum_probs=59.3

Q ss_pred             CCeEEEEEccCCCEEEEEec-----------------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270          425 TAVKACTISACGNFAVLGTA-----------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~-----------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (764)
                      .....+++..+|.++++-..                 .|.+..|+.  +......         ..-...++|+++|+++
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~---------~~l~~pNGI~~s~d~~  218 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA---------EGFDFANGINISPDGK  218 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEE---------EEESSEEEEEECTTSS
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEc---------CCCCccceeEECCCCC
Confidence            56788888888887777321                 223333433  2221111         2345678999999998


Q ss_pred             EEEEE-eCCCeEEEEECCCCCee---eeEecCcceEEEEEeec-CCEEEEE
Q 004270          488 LMISA-GYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRV-NGLLATV  533 (764)
Q Consensus       488 ~l~s~-~~dg~v~iwd~~~~~~~---~~~~~~~~i~~~~~s~~-~~~la~~  533 (764)
                      +|+.+ +..+.|++|++.....+   .........-.+.+.++ |.+.+.+
T Consensus       219 ~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         219 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            77555 46788999998754322   23344566777888764 4444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=3.9  Score=38.41  Aligned_cols=177  Identities=11%  Similarity=0.036  Sum_probs=100.5

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCcEEEEeCC-----------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 004270          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIS-----------TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH  208 (764)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~-----------~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iw  208 (764)
                      ...+++++..  ..+++|+.++ +.|-..+           .........  -..|..++|+-+  .|++.. ++.+..+
T Consensus        39 ~~LLAVsn~~--GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~~-~~~l~~~  110 (381)
T d1xipa_          39 LQNLDISNSK--SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVST-RNALYSL  110 (381)
T ss_dssp             CBCEEEETTT--TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred             cceEEEeCCC--CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEEe-CCCEEEE
Confidence            3455666665  5777777775 6666421           111111222  236889999755  465554 4678888


Q ss_pred             EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec----ccccCeeEEEEecCCCEEE
Q 004270          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLM  284 (764)
Q Consensus       209 d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~  284 (764)
                      +..+-......... ..++..+.+.|.   .++....+|.+.++++..++.......    .-.+.+.+++|++.+..++
T Consensus       111 ~~~~l~~~~~~~~~-~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         111 DLEELSEFRTVTSF-EKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             ESSSTTCEEEEEEC-SSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             Eeeccccccccccc-cccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            87765544444332 467888888875   455566789999999988864433220    1235677788887777777


Q ss_pred             EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (764)
Q Consensus       285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (764)
                      ++..++ ..+ ..+...  +..+.........|.+|.|..+..++++-
T Consensus       187 ~~~g~~-~q~-k~~i~~--~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AWRNGE-MEK-QFEFSL--PSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETTE-EEE-EEEECC--CHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCCCc-eee-ccCCCC--ccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            664321 111 111110  01111111234467889998776665544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.86  E-value=1.2  Score=43.73  Aligned_cols=103  Identities=14%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec---------CcceEEEEEeec---CCEEEEEeC-------
Q 004270          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---------GCSLVKIVYHRV---NGLLATVAD-------  535 (764)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------~~~i~~~~~s~~---~~~la~~~~-------  535 (764)
                      ...++|+|.|+++++++--..|.|++++..+++.......         +.....++++|+   +.++.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4668999999999888776679999998877765433321         256678999985   344444211       


Q ss_pred             C----C--eEEEEEccCC--e------EEEEee-cCCCCeeEEEEcCCCcEEEEEeC
Q 004270          536 D----L--VIRLFDVVAL--R------MVRKFE-GHTDRITDFCFSEDGKWLLSSGM  577 (764)
Q Consensus       536 d----~--~i~v~d~~~~--~------~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~  577 (764)
                      +    .  .+..+.....  .      .+..+. ........|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  1223332221  1      111111 11123578999999988777663

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.75  E-value=2.7  Score=40.96  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC---CCEEEEEeC-------
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGY-------  494 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~-------  494 (764)
                      ....+++|.|+|+++++--..|.|++++..++................-.....+|+++|+   +.++..+..       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            6788999999999888766689999999887765433321111111122457889999985   344433211       


Q ss_pred             C----C--eEEEEECCCCCee--------eeEec--CcceEEEEEeecCCEEEEEeC
Q 004270          495 H----G--DIKVWDFKGRDLK--------SRWEV--GCSLVKIVYHRVNGLLATVAD  535 (764)
Q Consensus       495 d----g--~v~iwd~~~~~~~--------~~~~~--~~~i~~~~~s~~~~~la~~~~  535 (764)
                      +    .  .+..+........        .....  ......+.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            0    1  2333333322111        11111  145678999999987766554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=2.7  Score=37.81  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             EEEEEeC-----CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEEEEecCCCCCceeeE
Q 004270          239 LLASGAS-----SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKMWIFDTTDGDPRLLR  308 (764)
Q Consensus       239 ~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~  308 (764)
                      +++.|+.     ...+..||..+.+....-.......-.+... .++.+++.++.++     ....++...  .....+.
T Consensus       151 ~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~--~~~~~~~  227 (288)
T d1zgka1         151 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVET--ETWTFVA  227 (288)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT--TEEEECC
T ss_pred             ceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecc--eeeeccc
Confidence            5555553     2457888887765433222111111122333 2455666665442     334444332  2222221


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEEeCCCc-----EEEEEeeccc
Q 004270          309 FRSGHSAPPLCIRFYANGRHILSAGQDRA-----FRLFSVIQDQ  347 (764)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~-----i~i~d~~~~~  347 (764)
                      ... ....-.+++. -+++.++.|+.++.     +.+||+.++.
T Consensus       228 ~~p-~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMK-HRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCS-SCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             Ccc-CcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            111 1111112333 36777777765442     6778876543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.20  E-value=3.6  Score=34.36  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=107.1

Q ss_pred             eCC-EEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE------eCCCcEEEEeCCCCeEE
Q 004270          102 FGE-HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG------SQEGSLQLWNISTKKKL  174 (764)
Q Consensus       102 ~g~-~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~------~~dg~i~iwd~~~~~~~  174 (764)
                      +++ .|+.+...|.+.++-+..++....       .... +.....|...+..+..+      -....|.+-|++..-.-
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkL-------tkeP-I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE   95 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKL-------NREP-INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE   95 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEEC-------CSSC-CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCE
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEE-------eccc-ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCee
Confidence            344 677776899999998888776211       1111 11222233322333221      11223444444322222


Q ss_pred             EEEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEE--------EEEEeeCCCCEEEEEeC
Q 004270          175 YEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT--------ALAFSSDGQPLLASGAS  245 (764)
Q Consensus       175 ~~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--------~l~fs~d~~~~l~sg~~  245 (764)
                      +++.... -.|.+++.. +.+.+.+|+......+|-++.|+.......+.-+-|+        .+.|...++.-++++.-
T Consensus        96 ~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl  174 (313)
T d2hu7a1          96 QRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  174 (313)
T ss_dssp             EECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             eEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence            3333222 345555544 3467778888888999999887754443332223333        33333333223444443


Q ss_pred             -CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEec-----cCCCCCCe
Q 004270          246 -SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPL  318 (764)
Q Consensus       246 -dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~  318 (764)
                       .|.++|++...|            .++....+++.+. ++.-. -|.-+.--++...+....+...     .-....|+
T Consensus       175 ~SG~lri~tpkeG------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~  241 (313)
T d2hu7a1         175 SSGGLRVFDSGEG------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAIT  241 (313)
T ss_dssp             TTEEEEEECCSSE------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEE
T ss_pred             ccCCEEEecCCCC------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEE
Confidence             566666665444            4444444554443 22211 1111111122222211111110     00122345


Q ss_pred             eEEEecCCCEEEEEeCCCcEEEEE
Q 004270          319 CIRFYANGRHILSAGQDRAFRLFS  342 (764)
Q Consensus       319 ~i~~~~~~~~l~s~~~dg~i~i~d  342 (764)
                      .+-+.|++++++.+-.||.-++|.
T Consensus       242 ~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         242 WLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEE
T ss_pred             eeeeCCCCcEEEEEecCCchheee
Confidence            566899999999999999999886

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=5.4  Score=35.64  Aligned_cols=214  Identities=11%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             CeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEECC-----------eEEEEecCceEEE-e---cccccceEEE
Q 004270           36 KAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGN-----------HIAVVKRAHQVAT-W---SRHSAKVNLL   99 (764)
Q Consensus        36 ~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g~-----------~i~vw~~~~~~~~-~---~~h~~~v~~l   99 (764)
                      ..+.+||+.+++=....+. .+..=.+++...+..|+..|.           ++.+||.....-+ +   ..-...-.+.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            4588999999865444321 122223444556666665441           2777886433222 1   1111112233


Q ss_pred             EEeCCEEEEEecCCc-----EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeCC
Q 004270          100 LLFGEHILSIDIDGN-----MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNIS  169 (764)
Q Consensus       100 ~~~g~~l~s~~~dg~-----v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~~  169 (764)
                      ..+++.++.++.++.     +..++..+......+  .. ............. .  ..++.|+.+     ..+..||..
T Consensus        99 ~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~r~~~~~~~~~-~--~~~~~GG~~~~~~~~~~~~~d~~  172 (288)
T d1zgka1          99 VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PM-LTRRIGVGVAVLN-R--LLYAVGGFDGTNRLNSAECYYPE  172 (288)
T ss_dssp             EETTEEEEECCEETTEECCCEEEEETTTTEEEECC--CC-SSCCBSCEEEEET-T--EEEEECCBCSSCBCCCEEEEETT
T ss_pred             ccceeeEEecceecccccceeeeeccccCcccccc--cc-ccccccceeeeee-e--cceEecCcccccccceEEEeecc
Confidence            345555555544333     444555554331100  00 0111122222332 2  244444443     346778877


Q ss_pred             CCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270          170 TKKKLYEFKG-WGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (764)
Q Consensus       170 ~~~~~~~~~~-h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg  243 (764)
                      +.+-...-.. ....-.+.+.. .+.+++.|+.+     .....+|..+.+....-.......-.+++. -+++ +++.|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~-l~v~G  249 (288)
T d1zgka1         173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGR-IYVLG  249 (288)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE-EEEEC
T ss_pred             ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCE-EEEEe
Confidence            6543322111 11111122222 34555565443     346777776654333211111111122232 3666 77777


Q ss_pred             eCCC-----cEEEEECCCce
Q 004270          244 ASSG-----VISIWNLEKRR  258 (764)
Q Consensus       244 ~~dg-----~i~iwd~~~~~  258 (764)
                      +.++     .|.+||+.+.+
T Consensus       250 G~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         250 GYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CBCSSCBCCEEEEEETTTTE
T ss_pred             cCCCCeecceEEEEECCCCE
Confidence            6543     37889988764

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.72  E-value=3.6  Score=36.75  Aligned_cols=211  Identities=13%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEe
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLF  102 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~  102 (764)
                      +..+.+... |+.+..|......++-........|..++.-....++...+.++.|....  +......-...+..+...
T Consensus        34 G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~  112 (273)
T d1jtdb_          34 GYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAG  112 (273)
T ss_dssp             CSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEEE
T ss_pred             cCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeeeeeeeeeccCCCcceeeccccccccceeEEeee
Confidence            444555444 88999998777555444444566777887766666665677799996432  111122223445666665


Q ss_pred             CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS  182 (764)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  182 (764)
                      ....+.. .|+.+..|.-........+     .........+ ....  ..++ ...++.+..|................
T Consensus       113 ~~~~~~~-~dg~v~~~g~~~~~~~~~~-----~~~~~~v~~~-~~~~--~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~  182 (273)
T d1jtdb_         113 AWASYAL-KDGKVIAWGDDSDGQTTVP-----AEAQSGVTAL-DGGV--YTAL-AVKNGGVIAWGDNYFGQTTVPAEAQS  182 (273)
T ss_dssp             TTEEEEE-ETTEEEEEECCTTSTTSCC-----GGGGSSEEEE-EECS--SEEE-EEETTEEEEEECCTTSTTSCCGGGSS
T ss_pred             ccccccc-ccccceecccCCCCceeee-----ccCCceEEEE-eccc--eeee-eecccceeEeecccCCcccccccccC
Confidence            5555555 4899999975443321111     0111111111 2222  2233 33567888886543322111122345


Q ss_pred             CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (764)
Q Consensus       183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~  254 (764)
                      .|..++.... ..++.  .||.|.-|=.....++..-... ...|..|+-.  ..+.++. . ||.|..|=.
T Consensus       183 ~v~~Is~G~~-h~~~l--~dG~v~~WG~n~~Gql~~~~~~-~~~v~~I~~G--~~~~~~l-~-~g~v~~WG~  246 (273)
T d1jtdb_         183 GVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEA-LSGVSAIASG--EWYSLAL-K-NGKVIAWGS  246 (273)
T ss_dssp             SEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGG-GSSCCEEEEC--SSCEEEE-E-TTEEEEEST
T ss_pred             Cccceeccce-eeEEE--ecCcEEEcCCCCCCccCCCccC-CCCcEEEEeC--cceEEEE-E-CCEEEEECC
Confidence            6777766543 22332  3799988854322221111111 2346666533  2223443 3 799999953

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.12  E-value=4.5  Score=33.74  Aligned_cols=218  Identities=12%  Similarity=0.110  Sum_probs=125.2

Q ss_pred             CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEE-EeCCeEEE--EE----CCe---EEEEecC--ceEEEeccc
Q 004270           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALA-SYRDYTFA--AY----GNH---IAVVKRA--HQVATWSRH   92 (764)
Q Consensus        25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~-~~~~~~~~--a~----g~~---i~vw~~~--~~~~~~~~h   92 (764)
                      ++..++++...+.+.+|=...++.+...   ..+|.... -.+..-|+  +-    |.+   |++-+..  .+..++..-
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            4557777778999999988888877665   34554332 12222222  22    222   6666654  556665555


Q ss_pred             c-cceEEEEEeC-CEEEEEecCCcEEEEEccCCcccccceeeEe-------cCCccccEEE-EeCCCCCCEEEEEeC-CC
Q 004270           93 S-AKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVK-------LDDKFTPTCI-MHPDTYLNKVIVGSQ-EG  161 (764)
Q Consensus        93 ~-~~v~~l~~~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~p~~~~~~l~~~~~-dg  161 (764)
                      . -+|.+++.++ +..++|+......+|-++.+++..  +..++       .....+...- +.+..  .-++++.- .|
T Consensus       102 k~vRI~S~~yddk~vvF~Gased~~~LYviegGklrk--L~~vPpFsFVtDI~~d~I~G~g~~~g~~--~sfF~adl~SG  177 (313)
T d2hu7a1         102 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE--LARLPGFGFVSDIRGDLIAGLGFFGGGR--VSLFTSNLSSG  177 (313)
T ss_dssp             CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE--EEEESSCEEEEEEETTEEEEEEEEETTE--EEEEEEETTTE
T ss_pred             ceEEEEEeeecCceEEEecccCCceEEEEEeCCceee--eccCCCcceEEeccCCeEEEEeeecCCc--ceEEEEecccC
Confidence            4 7888888865 566678878889999999988621  11110       1112222221 33332  23444443 55


Q ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEe------ccCCCCEEEEEE
Q 004270          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFT------HSMRGAVTALAF  232 (764)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~------~~~~~~v~~l~f  232 (764)
                      .+++++.           ..+.++....++..+. +++...   ....-+|+++++.-..-.      .-..-.|+-+-+
T Consensus       178 ~lri~tp-----------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         178 GLRVFDS-----------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEECC-----------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             CEEEecC-----------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence            5555554           3455666666665544 444322   222245777655332111      111235677779


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270          233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (764)
Q Consensus       233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  264 (764)
                      .|+++ +++.+-.||.-++|.  +|+.+..-+
T Consensus       246 ~Pdd~-L~iiakrdG~s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         246 LPDGR-LAVVARREGRSAVFI--DGERVEAPQ  274 (313)
T ss_dssp             CTTSC-EEEEEEETTEEEEEE--TTEEECCCS
T ss_pred             CCCCc-EEEEEecCCchheee--cceEecCCC
Confidence            99999 888889999999997  566665544

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.15  E-value=11  Score=34.42  Aligned_cols=191  Identities=11%  Similarity=0.068  Sum_probs=110.0

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEE---CcCC------cccceecCccccccccccCcEEEE-EECC--CCCEEEEE
Q 004270          425 TAVKACTISACGNFAVLGTAGGWIERFN---LQSG------ISRGSYLDMSERSNYAHNGEVVGV-ACDS--TNTLMISA  492 (764)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~---~~~~------~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~~~l~s~  492 (764)
                      ..+..+........++.=++.|.++...   +..+      .++..+..      ......+..+ ...+  ...+|+..
T Consensus        39 D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~ll~------l~~~e~ii~~~~~~~~~~~~~l~~~  112 (323)
T d1wp5a_          39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIP------IDRDEEIIKAIPINDFELNGYFLFV  112 (323)
T ss_dssp             CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSC------CCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred             ceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccceeeec------ccCCcceEEEeeccccccceeEEEE
Confidence            4455555555566677777888766554   3322      22222210      1223344433 3332  35789999


Q ss_pred             eCCCeEEEEECCCCC------e--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE-------EEeec-C
Q 004270          493 GYHGDIKVWDFKGRD------L--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-------RKFEG-H  556 (764)
Q Consensus       493 ~~dg~v~iwd~~~~~------~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~-------~~~~~-h  556 (764)
                      +..|.++..++....      .  ...+.....+..+.+..+...++.++..|.+..|+...-+..       +-++- .
T Consensus       113 Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~  192 (323)
T d1wp5a_         113 TRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE  192 (323)
T ss_dssp             ETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT
T ss_pred             eehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccccccccccc
Confidence            999999999864321      1  123344477888888888889999999999999987654332       11111 2


Q ss_pred             CCCeeE-EEEcCCCcEEEEEeCCCcEEEEEcCccc-------eEEEEee---C-CceEEEEEcCCCCeEEEEEeCCC
Q 004270          557 TDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILAR-------QIDAIHV---D-VSITALSLSPNMDVLATAHVDQN  621 (764)
Q Consensus       557 ~~~i~~-l~~s~dg~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~---~-~~v~~l~~sp~g~~lat~~~d~~  621 (764)
                      .+.|.+ ....+++..|++.+..|..+.-.+..-+       =+..++.   . ..+.++....+.+.|+..+..+.
T Consensus       193 ~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~  269 (323)
T d1wp5a_         193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSF  269 (323)
T ss_dssp             TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSC
T ss_pred             ccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCE
Confidence            234444 3455667788888889988876654321       1222221   1 12555555555555655555554