Citrus Sinensis ID: 004272
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.954 | 0.738 | 0.652 | 0.0 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.441 | 0.446 | 0.449 | 1e-83 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.507 | 0.520 | 0.418 | 2e-83 | |
| P79955 | 643 | Carboxy-terminal kinesin | N/A | no | 0.456 | 0.542 | 0.439 | 2e-80 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.513 | 0.496 | 0.400 | 2e-79 | |
| O35231 | 824 | Kinesin-like protein KIFC | no | no | 0.446 | 0.413 | 0.476 | 8e-78 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.442 | 0.426 | 0.431 | 3e-77 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.446 | 0.409 | 0.473 | 3e-77 | |
| P28739 | 770 | Kinesin-like protein klpA | yes | no | 0.511 | 0.507 | 0.419 | 3e-77 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.445 | 0.568 | 0.429 | 1e-75 |
| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/753 (65%), Positives = 603/753 (80%), Gaps = 24/753 (3%)
Query: 7 LSFSVASVVEDVLQQHGNRPRDLDLESRKAEEAASRRYEAAGWLRKMVGVVAARDLPAEP 66
LSFSV S+VEDVLQQH +R D+ L SRK EE++ RRYEAAGWLR M+GV +D P EP
Sbjct: 11 LSFSVVSIVEDVLQQHSSRSSDVGLVSRKVEESSLRRYEAAGWLRDMIGVSNGKDFPGEP 70
Query: 67 SEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVA 126
SEEEFRLGLRSGI+LCNV+NKV PG+V KVVE+PD V DGAALSA+QYFEN+RNFLVA
Sbjct: 71 SEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDVA--DGAALSAFQYFENIRNFLVA 128
Query: 127 VQEMGLPTFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGVWKFGGTIKSTSLGTKS 186
++EMGLP+FEASD+E+GGKS R+VNC+LALKSY EWK G NG W++G +K K
Sbjct: 129 IEEMGLPSFEASDMEKGGKSIRIVNCILALKSYSEWKLKGENGPWRYGSNMKHNFGSRKL 188
Query: 187 FIRKNSEPFMNSLSRTSSINEKSLNSHSDLDSNKMSSSGSFSMLVRAVLLDKKPEEIPTV 246
F+RK+SEPF++S+SRT S + S + D + S +G LVR+ + D+K E+IP V
Sbjct: 189 FLRKSSEPFVSSISRTQSTDMLSTDQPLSSDGDSRSING----LVRSFIADRKHEDIPNV 244
Query: 247 VESVLSKLVEEFEHRIASQYEQMKTAPYHVNK------SLLKSAIVDKKGEDKNVKGSKR 300
VESVL+K++EE + R++ E MK++ + + ++++S + D + ++ + S
Sbjct: 245 VESVLNKVMEEVQQRLSIHNEMMKSSSKPIPEDDSSCETVVRSQLCDARQHEEAEENSPP 304
Query: 301 ---EECFQKNNISDEELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEF 357
E+ FQ+ N E +QK++ +QQ + IQELK TL+TTKAG++ +QMK+ E+F
Sbjct: 305 QVVEKKFQRTNFEHHE------EQKILLNQQ-KHIQELKQTLYTTKAGMKLLQMKYQEDF 357
Query: 358 SNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQ-SNYLSTVD 416
+LG H++GLA+AA+GY RVLEENRKLYN VQDLKG+IRVYCRVRPFL GQ S LS V+
Sbjct: 358 FHLGKHLNGLAYAATGYKRVLEENRKLYNLVQDLKGNIRVYCRVRPFLPGQESGGLSAVE 417
Query: 417 HIEEGNITINTPSKHGK-GWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAY 475
I+EG ITI PSK+GK G K F FNKV+GPSATQ EVFSDMQPL+RSVLDGYNVCIFAY
Sbjct: 418 DIDEGTITIRVPSKYGKAGQKPFMFNKVFGPSATQEEVFSDMQPLVRSVLDGYNVCIFAY 477
Query: 476 GQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVR 535
GQTGSGKT+TMTGP+ELTE+S GVNYRAL+DLFL++ QRKD Y+++VQMLEIYNEQVR
Sbjct: 478 GQTGSGKTFTMTGPKELTEESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQVR 537
Query: 536 DLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRS 595
DLL DG +RLEIRN+S G+NVP+ASL+PVSST DVI LM+LG NRAV +TA+NDRS
Sbjct: 538 DLLAQDGQTKRLEIRNNSHNGINVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRS 597
Query: 596 SRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSAL 655
SRSHSC+TVHVQG+DLTSG++ G MHLVDLAGSERV+KSEVTGDRLKEAQHIN+SLSAL
Sbjct: 598 SRSHSCVTVHVQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSAL 657
Query: 656 GDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715
GDVI+SL+QK HVPYRNSKLTQLLQDSLGG AKTLMFVHISPEPD +GETISTLKFAER
Sbjct: 658 GDVISSLSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAER 717
Query: 716 VATVELGAARVNKDSSDVKELKEQVLTLSVTVI 748
V +VELGAARVNKD+S+VKELKEQ+ L + ++
Sbjct: 718 VGSVELGAARVNKDNSEVKELKEQIANLKMALV 750
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Microtubule-binding motor protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P79955|CTK2_XENLA Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| 127519339 | 1015 | kinesin-related protein [Gossypium hirsu | 0.980 | 0.737 | 0.826 | 0.0 | |
| 255564276 | 1012 | kinesin heavy chain, putative [Ricinus c | 0.975 | 0.736 | 0.820 | 0.0 | |
| 224068400 | 1003 | predicted protein [Populus trichocarpa] | 0.969 | 0.738 | 0.821 | 0.0 | |
| 359479934 | 1011 | PREDICTED: kinesin-4-like [Vitis vinifer | 0.972 | 0.734 | 0.817 | 0.0 | |
| 297743934 | 1017 | unnamed protein product [Vitis vinifera] | 0.979 | 0.735 | 0.812 | 0.0 | |
| 356501886 | 1008 | PREDICTED: kinesin-4-like [Glycine max] | 0.973 | 0.738 | 0.801 | 0.0 | |
| 356570984 | 1011 | PREDICTED: kinesin-4-like [Glycine max] | 0.976 | 0.737 | 0.787 | 0.0 | |
| 356505602 | 1029 | PREDICTED: kinesin-4-like [Glycine max] | 0.976 | 0.724 | 0.770 | 0.0 | |
| 356536705 | 1010 | PREDICTED: kinesin-4-like [Glycine max] | 0.968 | 0.732 | 0.797 | 0.0 | |
| 449469054 | 1022 | PREDICTED: kinesin-4-like [Cucumis sativ | 0.969 | 0.725 | 0.780 | 0.0 |
| >gi|127519339|gb|ABO28522.1| kinesin-related protein [Gossypium hirsutum] | Back alignment and taxonomy information |
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Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/760 (82%), Positives = 694/760 (91%), Gaps = 11/760 (1%)
Query: 1 MAGEGRLSFSVASVVEDVLQQHGNRPRDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAR 60
MA EG LSFSVASVVEDVLQQHGNR +DLDLESRKAEE ASRRYEAAGWLRKMVGVVAA+
Sbjct: 1 MAAEGMLSFSVASVVEDVLQQHGNRSKDLDLESRKAEEDASRRYEAAGWLRKMVGVVAAK 60
Query: 61 DLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESP-DTVLVPDGAALSAYQYFEN 119
DLPAEPSEEEFRLGLRSGIILCNV+N+VQPGAVPKVVESP D L+PDGAALSA+QYFEN
Sbjct: 61 DLPAEPSEEEFRLGLRSGIILCNVLNRVQPGAVPKVVESPCDAALIPDGAALSAFQYFEN 120
Query: 120 VRNFLVAVQEMGLPTFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGVWKFGGTIK- 178
+RNFLVA Q +GLPTFEASDLEQGGKSARVVNCVLALKSY EW+ +GGNGVWKFGG K
Sbjct: 121 IRNFLVAGQGLGLPTFEASDLEQGGKSARVVNCVLALKSYNEWRLSGGNGVWKFGGNFKP 180
Query: 179 -STSLGTKSFIRKNSEPFMNSLSRTSSINEKSLNSHS-DLDSNKMSSSGSFSMLVRAVLL 236
+ +LG KSF+RKNSEPF NSL RTSS+NEK L+ HS ++D NKM+SSGS SMLVRA+L
Sbjct: 181 ATPTLG-KSFVRKNSEPFTNSLQRTSSMNEKLLSGHSNEIDPNKMASSGSLSMLVRALLT 239
Query: 237 DKKPEEIPTVVESVLSKLVEEFEHRIASQYEQMKTA-----PYHVNKSLLKSAIVDKKGE 291
DKKPEE+PT+VESVLSK+VEEFE+RIASQ E MKT P + K +LK + DKK E
Sbjct: 240 DKKPEEVPTLVESVLSKVVEEFENRIASQSEVMKTTSKDITPSNFRKPVLKQTLGDKKIE 299
Query: 292 DKNVKGSKREECFQKNNISDEELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQM 351
+KN++ K+E+CFQKN I++EELK Q KQ+MIFDQQ +I+ELKH +++TKAG+QF+QM
Sbjct: 300 EKNIEVMKKEDCFQKNLINEEELKGQLQKQQMIFDQQQRNIKELKHAINSTKAGMQFIQM 359
Query: 352 KFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNY 411
KFHEEF++LG+HIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSG S+Y
Sbjct: 360 KFHEEFNSLGMHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSG-SSY 418
Query: 412 LSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVC 471
LSTVDHIEEGNI INTPSK+GKG KSF+FNKV+G SATQAEVFSDMQPLIRSVLDGYNVC
Sbjct: 419 LSTVDHIEEGNIIINTPSKYGKGRKSFTFNKVFGQSATQAEVFSDMQPLIRSVLDGYNVC 478
Query: 472 IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYN 531
IFAYGQTGSGKTYTMTGP++LTEKSQGVNYRAL DLFL+AEQRKD F YDVAVQM+EIYN
Sbjct: 479 IFAYGQTGSGKTYTMTGPKDLTEKSQGVNYRALGDLFLLAEQRKDTFCYDVAVQMIEIYN 538
Query: 532 EQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATAL 591
EQVRDLLVTDGSN+RLEIRNSSQTGLNVPDA+L+PVSST+DVI+LMNLGQ+NRAVGATAL
Sbjct: 539 EQVRDLLVTDGSNKRLEIRNSSQTGLNVPDANLMPVSSTSDVIDLMNLGQRNRAVGATAL 598
Query: 592 NDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRS 651
NDRSSRSHSCLTVHVQG+DLTSGT RGCMHLVDLAGSERV+KSEVTGDRLKEAQHIN+S
Sbjct: 599 NDRSSRSHSCLTVHVQGRDLTSGTTLRGCMHLVDLAGSERVDKSEVTGDRLKEAQHINKS 658
Query: 652 LSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLK 711
LSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA+GETISTLK
Sbjct: 659 LSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDALGETISTLK 718
Query: 712 FAERVATVELGAARVNKDSSDVKELKEQVLTLSVTVISIE 751
FAERVATVELGAARVNKD+SDVKELKEQ+ +L + E
Sbjct: 719 FAERVATVELGAARVNKDTSDVKELKEQIASLKAALARKE 758
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Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564276|ref|XP_002523135.1| kinesin heavy chain, putative [Ricinus communis] gi|223537697|gb|EEF39320.1| kinesin heavy chain, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224068400|ref|XP_002302736.1| predicted protein [Populus trichocarpa] gi|222844462|gb|EEE82009.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359479934|ref|XP_002269237.2| PREDICTED: kinesin-4-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297743934|emb|CBI36904.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356501886|ref|XP_003519754.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356570984|ref|XP_003553662.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356505602|ref|XP_003521579.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356536705|ref|XP_003536876.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449469054|ref|XP_004152236.1| PREDICTED: kinesin-4-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| TAIR|locus:2061992 | 983 | AT2G47500 [Arabidopsis thalian | 0.967 | 0.751 | 0.721 | 2.9e-284 | |
| TAIR|locus:2148543 | 987 | ATK4 "kinesin 4" [Arabidopsis | 0.954 | 0.738 | 0.625 | 9.2e-242 | |
| TAIR|locus:2195316 | 1010 | AT1G09170 [Arabidopsis thalian | 0.261 | 0.198 | 0.8 | 1.6e-218 | |
| TAIR|locus:2101645 | 1087 | KP1 "kinesin-like protein 1" [ | 0.544 | 0.382 | 0.653 | 6.7e-186 | |
| TAIR|locus:2076289 | 922 | AT3G10310 [Arabidopsis thalian | 0.577 | 0.478 | 0.397 | 3.8e-144 | |
| TAIR|locus:2026639 | 1071 | AT1G63640 [Arabidopsis thalian | 0.560 | 0.399 | 0.594 | 1.3e-141 | |
| TAIR|locus:2027854 | 1025 | AT1G73860 [Arabidopsis thalian | 0.629 | 0.469 | 0.544 | 2.7e-132 | |
| TAIR|locus:2014129 | 1140 | AT1G18410 [Arabidopsis thalian | 0.608 | 0.407 | 0.569 | 1e-130 | |
| TAIR|locus:2136437 | 745 | ATK2 "kinesin 2" [Arabidopsis | 0.540 | 0.554 | 0.404 | 6.3e-76 | |
| UNIPROTKB|E2QS65 | 764 | KIFC3 "Uncharacterized protein | 0.447 | 0.447 | 0.483 | 9.6e-76 |
| TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2731 (966.4 bits), Expect = 2.9e-284, P = 2.9e-284
Identities = 541/750 (72%), Positives = 617/750 (82%)
Query: 4 EGRLSFSVASVVEDVLQQHGNRPRDLDLXXXXXXXXXXXXXXXXGWLRKMVGVVAARDLP 63
+G LSF+VASV+EDVLQQHGN RD DL WLR+MVGVV A+DLP
Sbjct: 8 DGGLSFTVASVMEDVLQQHGNGLRDHDLVSRRAEEAASRRYEAANWLRRMVGVVGAKDLP 67
Query: 64 AEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESP-DTVLVPDGAALSAYQYFENVRN 122
AEP+EE RLGLRSGIILC V+NKVQPGAV KVVESP D +LV DGA LSA+QYFENVRN
Sbjct: 68 AEPTEEGLRLGLRSGIILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRN 127
Query: 123 FLVAVQEMGLPTFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGVWKFGGTIKSTSL 182
FLVA+QEMG PTFEASDLEQGG ++RVVNCVLA+KSY EWKQ+GG GVWKFGG IK +L
Sbjct: 128 FLVAIQEMGFPTFEASDLEQGGNASRVVNCVLAIKSYDEWKQSGGIGVWKFGGNIKPPAL 187
Query: 183 GTKSFIRKNSEPFMNSLSRTSSINEKSLNSHSDLDXXXXXXXXXXXMLVRAVLLDKKPEE 242
G SF+RKNSEPFMNSLSRTSSIN + S +D + LVRAVL DKKPE+
Sbjct: 188 GKSSFVRKNSEPFMNSLSRTSSINNEKAPSENDSNKLSSPSSLST--LVRAVLSDKKPED 245
Query: 243 IPTXXXXXXXXXXXXXXHRIASQYEQMKTAPYHV-----NKSLLKSAIVDKKGEDKNVKG 297
+P +R+ +QYE ++ AP N+S LK + +++ E+K+ K
Sbjct: 246 VPKLIESLLSKVVEEFENRVTNQYELVRAAPRESTSSQNNRSFLKP-LGEREREEKSFKA 304
Query: 298 SKREECFQKNNISDEELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEF 357
K+++ + I DE++K++ KQ IF+QQ EDI+ L+ TL+TT+AG+QFMQ KF EEF
Sbjct: 305 IKKDD--HNSQILDEKMKTRQFKQLTIFNQQQEDIEGLRQTLYTTRAGMQFMQKKFQEEF 362
Query: 358 SNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDH 417
S+LG+H+HGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFL GQS++ ST+ +
Sbjct: 363 SSLGMHVHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLPGQSSFSSTIGN 422
Query: 418 IEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQ 477
+E+ I INT S+HGK KSF+FNKV+GPSATQ EVFSDMQPLIRSVLDGYNVCIFAYGQ
Sbjct: 423 MEDDTIGINTASRHGKSLKSFTFNKVFGPSATQEEVFSDMQPLIRSVLDGYNVCIFAYGQ 482
Query: 478 TGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDL 537
TGSGKT+TM+GPR+LTEKSQGVNYRAL DLFL+AEQRKD FRYD+AVQM+EIYNEQVRDL
Sbjct: 483 TGSGKTFTMSGPRDLTEKSQGVNYRALGDLFLLAEQRKDTFRYDIAVQMIEIYNEQVRDL 542
Query: 538 LVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSR 597
LVTDGSN+RLEIRNSSQ GL+VPDASL+PVSST DVI+LM G KNRAVG+TALNDRSSR
Sbjct: 543 LVTDGSNKRLEIRNSSQKGLSVPDASLVPVSSTFDVIDLMKTGHKNRAVGSTALNDRSSR 602
Query: 598 SHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGD 657
SHSCLTVHVQG+DLTSG + RGCMHLVDLAGSERV+KSEVTGDRLKEAQHINRSLSALGD
Sbjct: 603 SHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEVTGDRLKEAQHINRSLSALGD 662
Query: 658 VIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVA 717
VIASLA KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPE DAVGETISTLKFAERVA
Sbjct: 663 VIASLAHKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEADAVGETISTLKFAERVA 722
Query: 718 TVELGAARVNKDSSDVKELKEQVLTLSVTV 747
TVELGAARVN D+SDVKELKEQ+ TL +
Sbjct: 723 TVELGAARVNNDTSDVKELKEQIATLKAAL 752
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| TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2195316 AT1G09170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076289 AT3G10310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028054001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (995 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 764 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-173 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-144 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-140 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-126 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-100 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 9e-99 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 7e-98 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 4e-95 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-91 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 8e-89 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 2e-86 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 9e-81 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 2e-77 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-75 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 5e-74 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-73 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 4e-67 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-61 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 4e-45 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 1e-10 | |
| smart00033 | 101 | smart00033, CH, Calponin homology domain | 1e-09 | |
| pfam00307 | 104 | pfam00307, CH, Calponin homology (CH) domain | 4e-08 | |
| cd00014 | 107 | cd00014, CH, Calponin homology domain; actin-bindi | 1e-07 | |
| COG5261 | 1054 | COG5261, IQG1, Protein involved in regulation of c | 5e-05 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 499 bits (1287), Expect = e-173
Identities = 181/334 (54%), Positives = 237/334 (70%), Gaps = 8/334 (2%)
Query: 392 KGSIRVYCRVRPFL-SGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQ 450
KG+IRV+CRVRP L S + Y S + +E TI GK KSFSF++V+ P A+Q
Sbjct: 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKK-KSFSFDRVFDPDASQ 59
Query: 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLI 510
+VF ++ PL++S LDGYNVCIFAYGQTGSGKTYTM GP E + G+ RAL LF
Sbjct: 60 EDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPE----NPGIIPRALEQLFNT 115
Query: 511 AEQRKDI-FRYDVAVQMLEIYNEQVRDLLVTDGSNR-RLEIRNSSQTGLNVPDASLIPVS 568
AE+ K+ + Y + MLEIYNE +RDLL T + + +LEI++ S+ V + + +PVS
Sbjct: 116 AEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVS 175
Query: 569 STADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAG 628
S +V L+NLG KNR+V +T +N+ SSRSH+ + ++G +L +G RG ++LVDLAG
Sbjct: 176 SPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAG 235
Query: 629 SERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQA 688
SER+ KS TGDRLKEAQ IN+SLSALGDVI++L K+ HVPYRNSKLT LLQDSLGG +
Sbjct: 236 SERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNS 295
Query: 689 KTLMFVHISPEPDAVGETISTLKFAERVATVELG 722
KTLMFV+ISP + ET+ +L+FA RV +VELG
Sbjct: 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|214479 smart00033, CH, Calponin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) | Back alignment and domain information |
|---|
| >gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| KOG2046 | 193 | consensus Calponin [Cytoskeleton] | 99.94 | |
| COG5199 | 178 | SCP1 Calponin [Cytoskeleton] | 99.78 | |
| cd00014 | 107 | CH Calponin homology domain; actin-binding domain | 99.62 | |
| COG5261 | 1054 | IQG1 Protein involved in regulation of cellular mo | 99.58 | |
| KOG2996 | 865 | consensus Rho guanine nucleotide exchange factor V | 99.52 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 99.52 | |
| smart00033 | 103 | CH Calponin homology domain. Actin binding domains | 99.51 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.42 | |
| PF00307 | 108 | CH: Calponin homology (CH) domain; InterPro: IPR00 | 99.38 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.09 | |
| PF11971 | 85 | CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T | 97.9 | |
| KOG0046 | 627 | consensus Ca2+-binding actin-bundling protein (fim | 97.57 | |
| PF06395 | 89 | CDC24: CDC24 Calponin; InterPro: IPR010481 This is | 97.2 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.37 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 93.28 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 91.86 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 91.34 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 91.34 | |
| KOG0046 | 627 | consensus Ca2+-binding actin-bundling protein (fim | 91.3 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 89.63 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.96 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.77 | |
| PRK06620 | 214 | hypothetical protein; Validated | 88.68 | |
| COG5069 | 612 | SAC6 Ca2+-binding actin-bundling protein fimbrin/p | 88.41 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 88.31 | |
| PRK08116 | 268 | hypothetical protein; Validated | 86.92 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 86.82 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 86.53 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 86.28 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 86.18 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 85.93 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 85.63 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 85.52 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 84.56 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 84.16 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 84.06 | |
| PRK09087 | 226 | hypothetical protein; Validated | 83.67 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 83.66 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 82.85 | |
| KOG0517 | 2473 | consensus Beta-spectrin [Cytoskeleton] | 82.1 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 81.87 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 81.79 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 81.63 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 81.53 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 81.05 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 80.66 |
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-95 Score=838.77 Aligned_cols=424 Identities=47% Similarity=0.719 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHH---HHHhhhhhhhhccCCCEEEE
Q 004272 322 KMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVL---EENRKLYNQVQDLKGSIRVY 398 (764)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~e~r~l~n~~~~lkg~IrV~ 398 (764)
+..++.++.++++|+..+..++..+..++..+++.+......+..++.....|+... .+||+|||+++|||||||||
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEE
Confidence 334889999999999999999999999999999999999888999999998888877 89999999999999999999
Q ss_pred EEeCCCCCCCCCC-CcceeeecC-CeEEEeCCCCCCC-CceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEee
Q 004272 399 CRVRPFLSGQSNY-LSTVDHIEE-GNITINTPSKHGK-GWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAY 475 (764)
Q Consensus 399 ~RVRP~~~~e~~~-~~~i~~~~~-~~i~i~~p~~~g~-~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaY 475 (764)
|||||+++++... ...+...++ +.+.+..|....+ ..+.|.||+||+|.++|++||.+++|+|+++|||||||||||
T Consensus 320 CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAY 399 (670)
T KOG0239|consen 320 CRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAY 399 (670)
T ss_pred EEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEe
Confidence 9999999988763 344555544 5688888877665 344699999999999999999999999999999999999999
Q ss_pred ccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCC
Q 004272 476 GQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQT 555 (764)
Q Consensus 476 GqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~ 555 (764)
|||||||||||.|| +++++|||||++++||..+.....+|.|.+.++|+|||||.|+|||.++.....+.|++++.+
T Consensus 400 GQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~ 476 (670)
T KOG0239|consen 400 GQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEG 476 (670)
T ss_pred cccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCC
Confidence 99999999999997 467899999999999999999888999999999999999999999977655678999999999
Q ss_pred CccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCcccc
Q 004272 556 GLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKS 635 (764)
Q Consensus 556 g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s 635 (764)
+.+|++++.++|.+.+++..+++.|.+||++++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||++++
T Consensus 477 ~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s 556 (670)
T KOG0239|consen 477 NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKS 556 (670)
T ss_pred ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHH
Q 004272 636 EVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715 (764)
Q Consensus 636 ~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r 715 (764)
+++|+|++|+++||+||++||+||.||++++.||||||||||+|||++|||++||+|||+|||...++.||+++|+||+|
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~r 636 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATR 636 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcccccCCchHHHHHHHHHHHHHHHhh
Q 004272 716 VATVELGAARVNKDSSDVKELKEQVLTLSVTVI 748 (764)
Q Consensus 716 ~~~v~~g~~~~n~~~~~v~~L~~ei~~Lk~~l~ 748 (764)
|+.|++|+++.+.++.+...++.....++...+
T Consensus 637 v~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~~ 669 (670)
T KOG0239|consen 637 VRSVELGSARKQVSTSDDVSLKRFGQLEKLSTA 669 (670)
T ss_pred hhceecccccccccccchhhhhhhhhhhhhhhc
Confidence 999999999999999999899888888776543
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG2046 consensus Calponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5199 SCP1 Calponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) | Back alignment and domain information |
|---|
| >COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00033 CH Calponin homology domain | Back alignment and domain information |
|---|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins | Back alignment and domain information |
|---|
| >KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0517 consensus Beta-spectrin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 764 | ||||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 4e-75 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 5e-74 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-71 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-68 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 1e-68 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 6e-68 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 1e-67 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-67 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-67 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 4e-67 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 5e-67 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-66 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 2e-64 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 8e-64 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-63 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-63 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-63 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-63 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 2e-60 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-57 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 1e-55 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-55 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 9e-55 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 2e-54 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 8e-54 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 8e-54 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-52 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 1e-51 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-51 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 1e-51 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-51 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-51 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-51 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-51 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 3e-51 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 4e-49 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 1e-48 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-48 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-47 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 1e-47 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 1e-47 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 1e-47 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 1e-47 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 1e-47 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 1e-47 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 2e-47 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-44 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 7e-40 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 7e-39 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-38 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 8e-37 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-36 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-36 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 2e-31 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 4e-29 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-26 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-14 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-13 | ||
| 1wyp_A | 136 | Solution Structure Of The Ch Domain Of Human Calpon | 1e-08 | ||
| 1wyn_A | 146 | Solution Structure Of The Ch Domain Of Human Calpon | 2e-08 | ||
| 1h67_A | 108 | Nmr Structure Of The Ch Domain Of Calponin Length = | 1e-07 | ||
| 1wyr_A | 121 | Solution Structure Of The Ch Domain Of Human Rho Gu | 1e-04 | ||
| 1p2x_A | 159 | Crystal Structure Of The Calponin-Homology Domain O | 5e-04 | ||
| 1p5s_A | 203 | Structure And Function Of The Calponin-Homology Dom | 6e-04 |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
|
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1 Length = 136 | Back alignment and structure |
| >pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2 Length = 146 | Back alignment and structure |
| >pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin Length = 108 | Back alignment and structure |
| >pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine Nucleotide Exchange Factor 6 Length = 121 | Back alignment and structure |
| >pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2 From Schizosaccharomyces Pombe Length = 159 | Back alignment and structure |
| >pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of An Iqgap Protein From Schizosaccharomyces Pombe Length = 203 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 145/417 (34%), Positives = 227/417 (54%), Gaps = 13/417 (3%)
Query: 335 LKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGS 394
+ + ++ + E L + E ++L+N V DL+ +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60
Query: 395 IRVYCRVRPFLSGQSNY-LSTVDHIEEGNITI---NTPSKHGKGWKSFSFNKVYGPSATQ 450
IRV+CR+RP L + N T + +E + + + +K G + FSF++V+ P ++Q
Sbjct: 61 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 120
Query: 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLF-L 509
+++F + PLI+S LDGYN+CIFAYGQTGSGKTYTM G E S GV R + LF
Sbjct: 121 SDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE----SVGVIPRTVDLLFDS 176
Query: 510 IAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSS 569
I R + Y++ LEIYNE + DLL + + + + +++ + V + + V
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 570 TADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGS 629
+ +LM+ + NRA +TA N+RSSRSH+ + + G+ + G ++LVDLAGS
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGS 296
Query: 630 ERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAK 689
E T R+ E ++INRSLS L +VI +L QK H+PYRNSKLT LL SLGG +K
Sbjct: 297 ES----PKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 352
Query: 690 TLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQVLTLSVT 746
TLMF+++SP D E++ +L+FA V + ++ A+ N+ ++ S +
Sbjct: 353 TLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQSNNSGS 409
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108 | Back alignment and structure |
|---|
| >1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144 | Back alignment and structure |
|---|
| >2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
| >1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203 | Back alignment and structure |
|---|
| >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136 | Back alignment and structure |
|---|
| >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
| >1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159 | Back alignment and structure |
|---|
| >1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
| >2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 100.0 | |
| 2l3g_A | 126 | RHO guanine nucleotide exchange factor 7; structur | 99.94 | |
| 1h67_A | 108 | Calponin alpha; cytoskeleton, calponin homology do | 99.94 | |
| 1wym_A | 155 | Transgelin-2; CH domain, F-actin binding, all heli | 99.94 | |
| 1p2x_A | 159 | RNG2 protein, RAS GTPase-activating-like protein; | 99.94 | |
| 1wyr_A | 121 | RHO guanine nucleotide exchange factor 6; CH domai | 99.94 | |
| 1ujo_A | 144 | Transgelin; CH domain, actin binding, structural g | 99.94 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.94 | |
| 2rr8_A | 190 | Iqgap1 protein; F-actin binding protein, protein b | 99.93 | |
| 3i6x_A | 193 | P195, RAS GTPase-activating-like protein iqgap1; a | 99.93 | |
| 1wyp_A | 136 | Calponin 1; CH domain, F-actin binding, all-alpha, | 99.93 | |
| 1wyn_A | 146 | Calponin-2; CH domain, F-actin binding, all alpha | 99.92 | |
| 1p5s_A | 203 | RAS GTPase-activating-like protein RNG2; alpha-hel | 99.92 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.92 | |
| 3ky9_A | 587 | Proto-oncogene VAV; calponin homology domain, DBL | 99.82 | |
| 2yrn_A | 129 | Neuron navigator 2 isoform 4; calponin homolgy dom | 99.37 | |
| 2qjz_A | 123 | Microtubule-associated protein RP/EB family member | 99.11 | |
| 1wyo_A | 159 | Protein EB3, microtubule-associated protein RP/EB | 99.06 | |
| 1pxy_A | 506 | Fimbrin-like protein; calponin homology, F-actin-b | 99.04 | |
| 1aoa_A | 275 | T-fimbrin; actin-binding protein, calcium-binding, | 98.98 | |
| 1wku_A | 254 | Alpha-actinin 3; calponin homology domain, actin b | 98.87 | |
| 1rt8_A | 513 | Fimbrin; filamentous actin binding domain (ABD), c | 98.79 | |
| 2wa7_A | 245 | Filamin-B; disease mutation, skeletal dysplasia, s | 98.7 | |
| 1sh5_A | 245 | Plectin 1, PLTN, PCN; actin-binding domain, calpon | 98.57 | |
| 1dxx_A | 246 | Dystrophin; structural protein, muscular dystrophy | 98.56 | |
| 3f7p_A | 296 | Plectin-1; plakin, hemidesmosome, cell adhesion, e | 98.53 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 98.49 | |
| 1rt8_A | 513 | Fimbrin; filamentous actin binding domain (ABD), c | 98.4 | |
| 3hoc_A | 272 | Filamin-A; calponin homology domain, actin binding | 98.23 | |
| 2vzc_A | 131 | Alpha-parvin; membrane, cytoplasm, cytoskeleton, c | 98.1 | |
| 1sjj_A | 863 | Actinin; 3-helix bundle, calponin homology domain, | 98.09 | |
| 1pxy_A | 506 | Fimbrin-like protein; calponin homology, F-actin-b | 97.67 | |
| 1wjo_A | 124 | T-plastin; CH domain, actin binding, structural ge | 97.55 | |
| 4b7l_A | 347 | Filamin-B; structural protein, FR 1 filamin hinge | 97.26 | |
| 2d89_A | 119 | EHBP1 protein; all alpha, calponin homology domain | 96.85 | |
| 1wyl_A | 116 | NEDD9 interacting protein with calponin homology a | 96.8 | |
| 1wyq_A | 127 | Spectrin beta chain, brain 2; NPPSFA, structural g | 96.23 | |
| 1bkr_A | 109 | Spectrin beta chain; filamentous actin-binding dom | 96.16 | |
| 2d87_A | 128 | Smoothelin splice isoform L2; all alpha, calponin | 96.14 | |
| 2r8u_A | 268 | Microtubule-associated protein RP/EB family member | 96.11 | |
| 1bhd_A | 118 | Utrophin; calponin homology, actin binding, struct | 95.86 | |
| 2wa7_A | 245 | Filamin-B; disease mutation, skeletal dysplasia, s | 95.77 | |
| 2d88_A | 121 | Protein mical-3; all alpha, calponin homology doma | 95.76 | |
| 1wku_A | 254 | Alpha-actinin 3; calponin homology domain, actin b | 95.7 | |
| 4abo_I | 145 | MAL3, microtubule integrity protein MAL3; structur | 95.49 | |
| 1sh5_A | 245 | Plectin 1, PLTN, PCN; actin-binding domain, calpon | 95.45 | |
| 1aoa_A | 275 | T-fimbrin; actin-binding protein, calcium-binding, | 95.43 | |
| 1dxx_A | 246 | Dystrophin; structural protein, muscular dystrophy | 94.88 | |
| 3hoc_A | 272 | Filamin-A; calponin homology domain, actin binding | 94.85 | |
| 2qjx_A | 127 | Protein BIM1; calponin homology domain, protein bi | 94.58 | |
| 4b7l_A | 347 | Filamin-B; structural protein, FR 1 filamin hinge | 94.55 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.89 | |
| 3f7p_A | 296 | Plectin-1; plakin, hemidesmosome, cell adhesion, e | 93.29 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 92.56 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.98 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 89.94 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 89.54 | |
| 1sjj_A | 863 | Actinin; 3-helix bundle, calponin homology domain, | 89.18 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 88.81 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 86.39 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 85.28 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 83.26 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 82.88 | |
| 2ee7_A | 127 | Sperm flagellar protein 1; all alpha protein, CH d | 82.54 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 82.49 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 80.12 |
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-92 Score=780.21 Aligned_cols=348 Identities=40% Similarity=0.642 Sum_probs=293.6
Q ss_pred hhHHHHHHhhhhhhhhccCCCEEEEEEeCCCCCCCCCCCcce-eeecCCeEEEeCCCCCCC---CceEEEcceecCCCCC
Q 004272 374 YHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTV-DHIEEGNITINTPSKHGK---GWKSFSFNKVYGPSAT 449 (764)
Q Consensus 374 ~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~~i-~~~~~~~i~i~~p~~~g~---~~~~F~FD~VF~~~at 449 (764)
+++...+||+|||+++|++|||||||||||+.+.|.....+. ...++.++.+..+....+ +.+.|.||+||+|+++
T Consensus 40 l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~ 119 (412)
T 3u06_A 40 LFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCC
Confidence 344556899999999999999999999999998876544443 344667777765443222 3578999999999999
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEE
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLE 528 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~E 528 (764)
|++||+.+.|+|+++++|||+||||||||||||||||+|+ ++++|||||++++||..+.... ..+.|.|+|||+|
T Consensus 120 Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 195 (412)
T 3u06_A 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 195 (412)
T ss_dssp HHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEE----TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCC----CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999995 4578999999999999887643 5689999999999
Q ss_pred EeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEe
Q 004272 529 IYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQG 608 (764)
Q Consensus 529 IYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~ 608 (764)
||||+|+|||.+......+.+.+++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+
T Consensus 196 IYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 275 (412)
T 3u06_A 196 IYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIG 275 (412)
T ss_dssp EETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEE
T ss_pred EeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEE
Confidence 99999999997765555566667788899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCc
Q 004272 609 KDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQA 688 (764)
Q Consensus 609 ~~~~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGns 688 (764)
.+...+....|+|+|||||||||.. +|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||
T Consensus 276 ~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGns 351 (412)
T 3u06_A 276 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 351 (412)
T ss_dssp EETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTC
T ss_pred EeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCc
Confidence 9888888899999999999999974 468999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCC
Q 004272 689 KTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKD 729 (764)
Q Consensus 689 kt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~ 729 (764)
+|+||+||||+..+++||++||+||+||++|++++++.|..
T Consensus 352 kt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--------
T ss_pred eEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999987764
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A | Back alignment and structure |
|---|
| >2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A | Back alignment and structure |
|---|
| >1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B | Back alignment and structure |
|---|
| >1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 | Back alignment and structure |
|---|
| >1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K | Back alignment and structure |
|---|
| >1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A | Back alignment and structure |
|---|
| >1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A | Back alignment and structure |
|---|
| >1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A | Back alignment and structure |
|---|
| >3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A | Back alignment and structure |
|---|
| >2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 | Back alignment and structure |
|---|
| >1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B | Back alignment and structure |
|---|
| >1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A | Back alignment and structure |
|---|
| >4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A | Back alignment and structure |
|---|
| >2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A | Back alignment and structure |
|---|
| >1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A | Back alignment and structure |
|---|
| >2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A | Back alignment and structure |
|---|
| >2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A | Back alignment and structure |
|---|
| >1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 | Back alignment and structure |
|---|
| >2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A | Back alignment and structure |
|---|
| >2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A | Back alignment and structure |
|---|
| >1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K | Back alignment and structure |
|---|
| >4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A | Back alignment and structure |
|---|
| >1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 | Back alignment and structure |
|---|
| >1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A | Back alignment and structure |
|---|
| >3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A | Back alignment and structure |
|---|
| >2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 764 | ||||
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 5e-89 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 4e-87 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 8e-83 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-81 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 8e-81 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 8e-79 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 9e-78 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 2e-77 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-74 | |
| d1ujoa_ | 144 | a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta | 1e-24 | |
| d1h67a_ | 108 | a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T | 9e-24 | |
| d1p2xa_ | 159 | a.40.1.1 (A:) Ras GTPase-activating-like protein r | 5e-16 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 282 bits (722), Expect = 5e-89
Identities = 139/355 (39%), Positives = 211/355 (59%), Gaps = 13/355 (3%)
Query: 367 LAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVDHIEEGNITI 425
L + E ++L+N V DL+G+IRV+CR+RP L + N + T + +E + +
Sbjct: 19 LETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 78
Query: 426 NTPSKHGK---GWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGK 482
+ K G + FSF++V+ P ++Q+++F + PLI+S LDGYN+CIFAYGQTGSGK
Sbjct: 79 QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGK 138
Query: 483 TYTMTGPRELTEKSQGVNYRALSDLF-LIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541
TYTM G +S GV R + LF I R + Y++ LEIYNE + DLL +
Sbjct: 139 TYTMDG----VPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 194
Query: 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSC 601
+ + + +++ + V + + V + +LM+ + NRA +TA N+RSSRSH+
Sbjct: 195 QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV 254
Query: 602 LTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIAS 661
+ + G+ + G ++LVDLA ++S T R+ E ++INRSLS L +VI +
Sbjct: 255 TKLELIGRHAEKQEISVGSINLVDLA----GSESPKTSTRMTETKNINRSLSELTNVILA 310
Query: 662 LAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERV 716
L QK H+PYRNSKLT LL SLGG +KTLMF+++SP D E++ +L+FA V
Sbjct: 311 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 365
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
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| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
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| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
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| >d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 | Back information, alignment and structure |
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| >d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108 | Back information, alignment and structure |
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| >d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1h67a_ | 108 | Calponin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.94 | |
| d1ujoa_ | 144 | Transgelin {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1p2xa_ | 159 | Ras GTPase-activating-like protein rng2 {Fission y | 99.89 | |
| d1aoaa1 | 131 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 98.71 | |
| d1sh5a1 | 120 | Actin binding domain of plectin {Human (Homo sapie | 98.46 | |
| d1wjoa_ | 124 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 98.34 | |
| d1aoaa2 | 116 | Fimbrin (Plastin), actin-crosslinking domain {Huma | 98.09 | |
| d2qjza1 | 120 | Microtubule-associated protein eb1, N-terminal mic | 97.97 | |
| d1dxxa1 | 111 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1pxya_ | 500 | Fimbrin (Plastin), actin-crosslinking domain {Thal | 97.57 | |
| d1rt8a_ | 505 | Fimbrin (Plastin), actin-crosslinking domain {Fiss | 96.91 | |
| d1rt8a_ | 505 | Fimbrin (Plastin), actin-crosslinking domain {Fiss | 96.71 | |
| d1dxxa2 | 127 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1bhda_ | 108 | Utrophin {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1sh5a2 | 110 | Actin binding domain of plectin {Human (Homo sapie | 96.6 | |
| d1bkra_ | 108 | beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} | 96.56 | |
| d1pxya_ | 500 | Fimbrin (Plastin), actin-crosslinking domain {Thal | 96.4 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.4 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.68 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.17 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.23 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 82.56 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.21 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.58 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=5.7e-82 Score=693.43 Aligned_cols=333 Identities=41% Similarity=0.662 Sum_probs=295.5
Q ss_pred HHHhhhhhhhhccCCCEEEEEEeCCCCCCCCCCCcc-eeeecCCeEEEeCCCCC---CCCceEEEcceecCCCCChHhHH
Q 004272 379 EENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLST-VDHIEEGNITINTPSKH---GKGWKSFSFNKVYGPSATQAEVF 454 (764)
Q Consensus 379 ~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~~-i~~~~~~~i~i~~p~~~---g~~~~~F~FD~VF~~~atQ~eVf 454 (764)
.+||+|||++.|+||||||||||||+.+.|...... +...++..+.+..+... ....+.|.||+||+++++|++||
T Consensus 31 ~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy 110 (368)
T d2ncda_ 31 MERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF 110 (368)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCHHHHH
T ss_pred HHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccCCcCceeeECCeEECCCCCccchH
Confidence 468999999999999999999999999887654443 44556677777654321 12458899999999999999999
Q ss_pred hhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEEEeCCe
Q 004272 455 SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEIYNEQ 533 (764)
Q Consensus 455 ~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~EIYnE~ 533 (764)
+.|.|+|+++++|||+||||||||||||||||+|+ +.++||+||++++||..+.... ..+.|.|.+||+|||||+
T Consensus 111 ~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~----~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~ 186 (368)
T d2ncda_ 111 EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEV 186 (368)
T ss_dssp TTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEE----TTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSC
T ss_pred HHHHHHHHHHhcccceeEEeeccCCCccceEeccc----ccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecce
Confidence 88999999999999999999999999999999995 4578999999999999886643 457899999999999999
Q ss_pred eeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC
Q 004272 534 VRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS 613 (764)
Q Consensus 534 V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~ 613 (764)
|+|||++........+++++.++++++|++++.|.+.+++..++..|.++|..+.|.+|.+|||||+||+|++...+...
T Consensus 187 i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~ 266 (368)
T d2ncda_ 187 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK 266 (368)
T ss_dssp EEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTS
T ss_pred eecccccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCC
Confidence 99999988777778888999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEE
Q 004272 614 GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMF 693 (764)
Q Consensus 614 ~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI 693 (764)
+....|+|+||||||+|+.. .+++++|+.+||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||
T Consensus 267 ~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI 342 (368)
T d2ncda_ 267 QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMF 342 (368)
T ss_dssp CCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEE
T ss_pred CceEeeeeeeeeeccccccc----hhhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEE
Confidence 88999999999999999865 36789999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 694 VHISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 694 ~~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
+||||+..+++||++||+||+||+.+
T Consensus 343 ~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 343 INVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999875
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|