Citrus Sinensis ID: 004281

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----
MEDRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHPIQQNGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK
cHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHccccHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
ccccccHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccHHHHHccccccccccEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHcHHccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHcHcccccccccccccccccccEccccccccccHHHHHHHHHcccHccccccHHcccccccccccHHHHHHccccccHcHHHHHHHccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
medrrselVVDEFEKLLgeipnatsgnthsedtgpkrvssnyilppitvnsskgplaeklknngnldegkILVNKsqqspikripqeeanlpddqsLTSAFAELRfnggipiepvspwancnsspnyavlldcqhpnglkepvsnvdSQLMVASsfqstnsvpsgfdefdltkvrqessnmvnlDVQELKKLqvgyrqpvenfsgalpnahslqgfrflsnvpvpgvefpvmsdpqqyfadtqssfpylhsqhlnqppiswrnidQEQYHRMQQQYLYLQQLRnqrsesqhpiqqngsipsklmgrtmrqpcfempnrleqsnQEQFwdayavprginhlnsafsstdcnpmhvlgkvgkqsfpekILTRSQGLNTLKAVKFGTVGGHESLNHINqsgkllsnghlclslstpnagcfqidglnswplssdsmdlkiirpqpqkynsveeVTGRIYLMAKDQHGCRFLqrkisegtLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVelatdrhgccviqkclthsegeqrHRLVSKITSnalilsqdpfgnYVVQFVFELRLPWATMDILDQLegnygdlsmqKYSSNVVEKCLKYGDDERRAHIIQELISNahldqvmldpygNYVIQAALQQSKGGVHSALVDairphvpvlrtspygkkvlscnslkk
medrrselVVDEFEKLLgeipnatsgnthsedtgpkRVSSNYILPpitvnsskgplAEKLKnngnldegkiLVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFqstnsvpsgfDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSEsqhpiqqngsipsklmGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIirpqpqkynsvEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAItrkagdlvrISTRAVQKVIetlkspeqfslVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLthsegeqrhRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRphvpvlrtspygkkvlscnslkk
MEDRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEqyhrmqqqylylqqlrnqrSESQHPIQQNGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK
***************************************************************************************************AFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQH***********************************************NLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQ*********************************************QFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKV********
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK
********VVDEFEKLLGEIPNATS**********KRVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLR************NGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKV********
*****SELVVDEFEKLLGEIPNAT****************NYILPPITVNSSKGPLAEKLKNNGNLDEGKILVN*SQQSPIKR**QEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHPIQQNGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLK*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHPIQQNGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query764 2.2.26 [Sep-21-2011]
Q9LVC3596 Pumilio homolog 12 OS=Ara yes no 0.761 0.976 0.451 1e-151
Q9C9R6650 Putative pumilio homolog no no 0.409 0.481 0.553 1e-100
Q9LM20515 Putative pumilio homolog no no 0.410 0.609 0.532 4e-96
Q9LDW3556 Pumilio homolog 11 OS=Ara no no 0.418 0.575 0.480 8e-88
Q1PFN9564 Pumilio homolog 9 OS=Arab no no 0.409 0.554 0.478 1e-79
Q9LP21528 Putative pumilio homolog no no 0.416 0.602 0.449 2e-73
Q92359681 Pumilio domain-containing yes no 0.393 0.441 0.414 7e-66
P25339888 Pumilio homology domain f yes no 0.399 0.343 0.395 4e-57
Q09829780 Pumilio domain-containing no no 0.400 0.392 0.353 1e-56
Q9LJX4961 Pumilio homolog 5 OS=Arab no no 0.401 0.319 0.333 5e-49
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2 Back     alignment and function desciption
 Score =  535 bits (1379), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 350/775 (45%), Positives = 438/775 (56%), Gaps = 193/775 (24%)

Query: 3   DRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKN 62
           D+R    +DEFEKLLGEIP  TSGN             +Y   PI ++SS+         
Sbjct: 2   DQRRGNELDEFEKLLGEIPKVTSGN-------------DYNHFPICLSSSRS-------- 40

Query: 63  NGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCN 122
                             IK++ Q    LPDD++ T++F+E   + GIP          N
Sbjct: 41  ----------------QSIKKVDQY---LPDDRAFTTSFSEANLHFGIP----------N 71

Query: 123 SSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMV 182
            +P      +  HP             L +  S+ S ++ P  +D+FD  K         
Sbjct: 72  HTP------ESPHP-------------LFINPSYHSPSNSPCVYDKFDSRK--------- 103

Query: 183 NLDVQELKKL-QVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFAD 241
            LD    +KL QVGY          LPN         LS+   P              A 
Sbjct: 104 -LDPVMFRKLQQVGY----------LPN---------LSSGISP--------------AQ 129

Query: 242 TQSSFPYLHSQHLN--QPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHP----IQQ 295
            Q   P  HSQ L+  Q P++WR+I++E + R+        +L+ ++  S +P    +Q 
Sbjct: 130 RQHYLP--HSQPLSHYQSPMTWRDIEEENFQRL--------KLQEEQYLSINPHFLHLQS 179

Query: 296 NGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVL 355
             ++P        RQ  F+   R EQSN+  FW+                  D N     
Sbjct: 180 MDTVP--------RQDHFDY-RRAEQSNRNLFWNG----------------EDGNE---- 210

Query: 356 GKVGKQSFPEKILTRSQ-GLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPN 414
             V K  +PEKIL RSQ  LNT K +K+G   G ES     Q+G+L     L   L    
Sbjct: 211 -SVRKMCYPEKILMRSQMDLNTAKVIKYG--AGDES-----QNGRLWLQNQLNEDL---- 258

Query: 415 AGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISE 474
                            +M L  +  QPQKYNS+ E  G+IY +AKDQHGCRFLQR  SE
Sbjct: 259 -----------------TMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSE 301

Query: 475 GTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS 534
               DIE IF EIID+I ELM DPFGNYLVQKLLEVCNEDQRMQI+ +ITRK G L++IS
Sbjct: 302 KDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKIS 361

Query: 535 -----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKF 589
                TRAVQK++ET K  E+ S+++S+LK GIV LIKN+NGNHV QRCL YLLP   KF
Sbjct: 362 CDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKF 421

Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
           LF+A   +CVELATDRHGCCV+QKCL +SEGEQ+  LVS+I SNAL+LSQDPFGNYV+Q+
Sbjct: 422 LFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQY 481

Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLD 709
           VFEL+L WAT +IL+QLEGNY +LSMQK SSNVVEKCLK  DD+ RA II+ELI+   LD
Sbjct: 482 VFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLD 541

Query: 710 QVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
           QVMLDPYGNYVIQAAL+QSKG VH+ LVDAI+ ++  LRT+PYGKKVLS  S KK
Sbjct: 542 QVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2 Back     alignment and function description
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana GN=APUM8 PE=3 SV=2 Back     alignment and function description
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2 Back     alignment and function description
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3 SV=2 Back     alignment and function description
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1 Back     alignment and function description
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2 Back     alignment and function description
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1 Back     alignment and function description
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query764
255564824771 RNA binding protein, putative [Ricinus c 0.955 0.946 0.677 0.0
147789082 1051 hypothetical protein VITISV_041015 [Viti 0.954 0.693 0.585 0.0
297746500722 unnamed protein product [Vitis vinifera] 0.917 0.970 0.574 0.0
225435792711 PREDICTED: pumilio homolog 12-like [Viti 0.904 0.971 0.570 0.0
224052863620 predicted protein [Populus trichocarpa] 0.795 0.980 0.583 0.0
147861285815 hypothetical protein VITISV_009053 [Viti 0.977 0.916 0.439 1e-171
225441625815 PREDICTED: uncharacterized protein LOC10 0.977 0.916 0.439 1e-171
449493598731 PREDICTED: pumilio homolog 12-like [Cucu 0.937 0.979 0.461 1e-171
297739756714 unnamed protein product [Vitis vinifera] 0.869 0.929 0.455 1e-160
449452779698 PREDICTED: pumilio homolog 12-like [Cucu 0.893 0.978 0.445 1e-158
>gi|255564824|ref|XP_002523406.1| RNA binding protein, putative [Ricinus communis] gi|223537356|gb|EEF38985.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/775 (67%), Positives = 620/775 (80%), Gaps = 45/775 (5%)

Query: 1   MEDRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKL 60
           ME  R+EL  DEFEKLLGEIPNATSGN HSE+      + N  L PI +NS +G L EKL
Sbjct: 1   MEVGRTELDFDEFEKLLGEIPNATSGNPHSEEAA----TLNGGLSPICMNSFEGRLTEKL 56

Query: 61  KNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWAN 120
           ++NG+ +E K+L++K+Q+SPIKR+  EEANLPDDQSLTSAF +L FN G      S   N
Sbjct: 57  QSNGSPNERKLLISKNQESPIKRVQSEEANLPDDQSLTSAFTDLSFNTG------SGSTN 110

Query: 121 CNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSN 180
             SSP              K P  ++   +  A SF+   +VP GFDEF+ TKV  ESSN
Sbjct: 111 FKSSP--------------KAP--SISLSMTGAPSFRLPIAVPCGFDEFNATKVGHESSN 154

Query: 181 MVNLDVQELKKLQVGYRQP--VENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQY 238
           ++  +  ELK++  GYRQP  +EN S ALP AH +QGF+FLSNV VPG++FP+MSD +QY
Sbjct: 155 LLKFNAHELKQIPAGYRQPQPIENLSSALPLAHGVQGFQFLSNVAVPGIDFPLMSDQRQY 214

Query: 239 FADTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHPIQQNGS 298
           FAD QS  P +H+Q  NQP ISWRNI++EQ++RM QQYLYLQQL NQR E+QHP+Q NG+
Sbjct: 215 FADMQSVLPCIHAQQFNQPHISWRNIEEEQFYRMHQQYLYLQQLHNQRLEAQHPMQANGN 274

Query: 299 IPSKLMGRTMRQPCFEMP--NRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLG 356
           + +KLM R +RQP FE+P  ++L+Q NQEQ W+ YAV RG+N           N M++L 
Sbjct: 275 VATKLMNRHVRQPYFEVPVSHQLQQPNQEQVWNDYAVTRGLNQSQ--------NGMNILD 326

Query: 357 KVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAG 416
           +VGKQSFPEKILTRSQGL+TLKAVK+ + GG+ESL +++Q+GK+L NGHL  +L+ P+A 
Sbjct: 327 EVGKQSFPEKILTRSQGLSTLKAVKYSSAGGNESLANLSQNGKVLLNGHLRHTLTPPSAE 386

Query: 417 CFQIDGLNSWPLSSDSMDLKI--IRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISE 474
           CFQ+D L+SW LS D +DLK   +RPQPQKYNSV+EVTGR+YLMAKDQHGCRFLQRK SE
Sbjct: 387 CFQLDHLSSWDLSPDIIDLKSTNLRPQPQKYNSVDEVTGRVYLMAKDQHGCRFLQRKFSE 446

Query: 475 GTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS 534
           GT +DIEKIF+E+IDHI ELMTDPFGNYLVQKLLEVCNEDQRMQIL AITRKAG+LVRIS
Sbjct: 447 GTPQDIEKIFLEVIDHIAELMTDPFGNYLVQKLLEVCNEDQRMQILCAITRKAGELVRIS 506

Query: 535 -----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKF 589
                TRAVQKVIETLK+P+QFS+VVSSLKPGIVTLIKNMNGNHVAQRCL YL PE+S+F
Sbjct: 507 CDMHGTRAVQKVIETLKTPQQFSMVVSSLKPGIVTLIKNMNGNHVAQRCLQYLTPEHSEF 566

Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
           LF+A T NCVELATDRHGCCV+QKCL+HSEGEQR  L+S+ITSNALILSQDPFGNYVVQF
Sbjct: 567 LFEAATTNCVELATDRHGCCVLQKCLSHSEGEQRRCLISEITSNALILSQDPFGNYVVQF 626

Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLD 709
           VFELRLPWAT +ILDQLEGNYGDLSMQKYSSNV+EKCLKY  +E RAHII++LISN HLD
Sbjct: 627 VFELRLPWATANILDQLEGNYGDLSMQKYSSNVIEKCLKYASEEHRAHIIRQLISNTHLD 686

Query: 710 QVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
           QVM DPYGNYVIQAAL QSKG +H+ALV+AIRPHVPVLRTSPYGKKVLS N LKK
Sbjct: 687 QVMQDPYGNYVIQAALHQSKGALHAALVEAIRPHVPVLRTSPYGKKVLSSNFLKK 741

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789082|emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297746500|emb|CBI16556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435792|ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224052863|ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|222844876|gb|EEE82423.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147861285|emb|CAN81897.1| hypothetical protein VITISV_009053 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441625|ref|XP_002276886.1| PREDICTED: uncharacterized protein LOC100250413 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449493598|ref|XP_004159368.1| PREDICTED: pumilio homolog 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739756|emb|CBI29938.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452779|ref|XP_004144136.1| PREDICTED: pumilio homolog 12-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query764
TAIR|locus:2167111596 PUM12 "pumilio 12" [Arabidopsi 0.493 0.632 0.630 2.2e-131
TAIR|locus:2194699650 PUM7 "pumilio 7" [Arabidopsis 0.409 0.481 0.553 4.3e-94
TAIR|locus:2015036515 PUM8 "pumilio 8" [Arabidopsis 0.410 0.609 0.532 8.6e-88
DICTYBASE|DDB_G02899871036 DDB_G0289987 "Pumilio homology 0.426 0.314 0.465 5.1e-83
TAIR|locus:2138258556 PUM11 "pumilio 11" [Arabidopsi 0.410 0.564 0.492 4.1e-81
TAIR|locus:2011349564 PUM9 "pumilio 9" [Arabidopsis 0.409 0.554 0.478 7.3e-75
TAIR|locus:2011360528 PUM10 "pumilio 10" [Arabidopsi 0.409 0.592 0.453 2.9e-72
ASPGD|ASPL0000057098650 AN10071 [Emericella nidulans ( 0.409 0.481 0.424 2.1e-70
POMBASE|SPAC6G9.14681 SPAC6G9.14 "RNA-binding protei 0.434 0.487 0.394 2e-63
POMBASE|SPAC4G8.03c780 SPAC4G8.03c "RNA-binding prote 0.400 0.392 0.353 6.9e-57
TAIR|locus:2167111 PUM12 "pumilio 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1193 (425.0 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
 Identities = 246/390 (63%), Positives = 295/390 (75%)

Query:   387 GHESLNHINQSGKLLSNGHLCLSLSTP---NAGCFQIDGLNSW---PLSSD-SMDLKIIR 439
             G+ES+  +    K+L    + L+ +      AG    +G   W    L+ D +M L  + 
Sbjct:   208 GNESVRKMCYPEKILMRSQMDLNTAKVIKYGAGDESQNG-RLWLQNQLNEDLTMSLNNLS 266

Query:   440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
              QPQKYNS+ E  G+IY +AKDQHGCRFLQR  SE    DIE IF EIID+I ELM DPF
Sbjct:   267 LQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPF 326

Query:   500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLV 554
             GNYLVQKLLEVCNEDQRMQI+ +ITRK G L++IS     TRAVQK++ET K  E+ S++
Sbjct:   327 GNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISII 386

Query:   555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
             +S+LK GIV LIKN+NGNHV QRCL YLLP   KFLF+A   +CVELATDRHGCCV+QKC
Sbjct:   387 ISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKC 446

Query:   615 LTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS 674
             L +SEGEQ+  LVS+I SNAL+LSQDPFGNYV+Q+VFEL+L WAT +IL+QLEGNY +LS
Sbjct:   447 LGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELS 506

Query:   675 MQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHS 734
             MQK SSNVVEKCLK  DD+ RA II+ELI+   LDQVMLDPYGNYVIQAAL+QSKG VH+
Sbjct:   507 MQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHA 566

Query:   735 ALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
              LVDAI+ ++  LRT+PYGKKVLS  S KK
Sbjct:   567 LLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2194699 PUM7 "pumilio 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015036 PUM8 "pumilio 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289987 DDB_G0289987 "Pumilio homology domain family member 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2138258 PUM11 "pumilio 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011349 PUM9 "pumilio 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011360 PUM10 "pumilio 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057098 AN10071 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC6G9.14 SPAC6G9.14 "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC4G8.03c SPAC4G8.03c "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00031815
annotation not avaliable (767 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query764
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-130
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 8e-67
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 4e-25
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-09
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 5e-09
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 7e-09
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 2e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-06
cd07920 322 cd07920, Pumilio, Pumilio-family RNA binding domai 5e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 7e-04
smart0002536 smart00025, Pumilio, Pumilio-like repeats 0.002
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  388 bits (1000), Expect = e-130
 Identities = 157/316 (49%), Positives = 206/316 (65%), Gaps = 13/316 (4%)

Query: 452 TGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVC 511
            G I   AKDQHG RFLQ+K+ E T E+ E IF EI+ H+VELM DPFGNY++QKL E  
Sbjct: 9   AGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHG 68

Query: 512 NEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLI 566
            E+QR+Q+L+ I    G +VR+S      R +QK++E++ S EQ SL+V  L+  +V L+
Sbjct: 69  TEEQRLQLLEKIL---GHVVRLSLDMYGCRVIQKLLESI-SEEQISLLVKELRGHVVELV 124

Query: 567 KNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRL 626
           K+ NGNHV Q+C+    PE  +F+  A   NCV L+T  +GC VIQ+CL H   EQR  L
Sbjct: 125 KDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPL 184

Query: 627 VSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKC 686
           + +I  +AL L QD FGNYVVQ V EL  P  T  I+++L GN   LS  K++SNVVEKC
Sbjct: 185 LEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKC 244

Query: 687 LKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRP 742
           LK+   E R  II E+++     + LD +M D YGNYVIQ AL  +K      LV+AIRP
Sbjct: 245 LKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRP 304

Query: 743 HVPVLRTSPYGKKVLS 758
           H+P LR SPYGK +L+
Sbjct: 305 HLPSLRKSPYGKHILA 320

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 764
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
COG5099777 RNA-binding protein of the Puf family, translation 99.96
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.94
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.94
KOG2188650 consensus Predicted RNA-binding protein, contains 99.87
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.86
KOG2188650 consensus Predicted RNA-binding protein, contains 99.84
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.78
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 98.93
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 98.08
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.64
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.58
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.12
PRK05686339 fliG flagellar motor switch protein G; Validated 86.77
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 82.34
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-60  Score=528.23  Aligned_cols=310  Identities=35%  Similarity=0.583  Sum_probs=293.7

Q ss_pred             HHHhhhhHhhhccCCCccHHHHhhhccCCH-HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhcCHHHHHHHHHHHHHh
Q 004281          448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTL-EDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRK  526 (764)
Q Consensus       448 leEv~GkI~~LA~Dq~GSRvLQklLe~as~-eq~~~If~eL~~~i~eLs~D~yGNhVVQKLLE~~s~eqr~~Ii~~I~~~  526 (764)
                      +.++.|.++++++||+||||||..|+.++. +++..||++|.+.+.+||+|.||||||||+||+++.+++..+...+.  
T Consensus       174 ~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~--  251 (503)
T KOG1488|consen  174 LVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIK--  251 (503)
T ss_pred             ccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHH--
Confidence            446789999999999999999999999988 99999999999999999999999999999999999999888888876  


Q ss_pred             hhhHHhhh-----hHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhccCCCchHHHHHHhccChhhhHHHHhhhhh--hhh
Q 004281          527 AGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTN--NCV  599 (764)
Q Consensus       527 ~g~Ll~ls-----~rVVQKlIe~~~t~eq~~~IveeL~~~i~~L~~Dq~GNhVIQklLe~lspe~~~~IieaL~~--~iv  599 (764)
                       ++++.+|     ||||||+|+.++.. +...+++||..++..+++|++||||||||+++++++.+.||++.+.+  ++.
T Consensus       252 -g~v~~Lsld~ygCRVIQkale~id~~-~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~Fiv~~f~~~~~~~  329 (503)
T KOG1488|consen  252 -GHVLELSLDMYGCRVIQKALEKVDVS-LQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQFIVDFFSGDDNLL  329 (503)
T ss_pred             -hhhhhhhcccccchhHHHHHHhcCHH-HHHHHHHHHHhhHHHHHhhcccceehhhhhhccChHHHHHHHHHhcCCCcee
Confidence             4556655     99999999999755 44457888899999999999999999999999999999999999998  999


Q ss_pred             hhhcCcccchhhhhhhhcCChHHHHHHHHHHHHhHHHhhcCCCchHHHHHHHHhCChhhHHHHHHHHHHhhhccccCcch
Q 004281          600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYS  679 (764)
Q Consensus       600 ~Ls~dkyGSrVVQkiLe~as~eqr~~Li~eL~~~l~~La~DqyGNyVIQ~LLe~~~~~~r~~II~~L~g~~veLS~~K~G  679 (764)
                      .+|+|+|||||||++||+|+++++..++++|..++..|+.|+||||||||+|+++.++++..|+++|.++++++|.|||+
T Consensus       330 ~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~KfA  409 (503)
T KOG1488|consen  330 ELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKFA  409 (503)
T ss_pred             EeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhCCHHHHHHHHHHHHhc-----hhHHHhhcCCChhHHHHHHhhcCChhhHHHHHHHHhhhHHHHhcCCchH
Q 004281          680 SNVVEKCLKYGDDERRAHIIQELISN-----AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGK  754 (764)
Q Consensus       680 S~VVEK~L~~a~~k~Rk~Ii~eLl~~-----~~L~~La~DqyGNyVIQkLL~~~~~~~r~~Lve~L~~~l~~L~~skyGs  754 (764)
                      |+||||||.+++...|..|++|++..     +.|..||+|+|||||||++|+.|.+.+++.|...|++|+..|+..+||+
T Consensus       410 SnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~h~~~Lrk~syGK  489 (503)
T KOG1488|consen  410 SNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKPHASRLRKFSYGK  489 (503)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHccCccHH
Confidence            99999999999999999999999973     6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 004281          755 KVLSCNS  761 (764)
Q Consensus       755 rVV~kL~  761 (764)
                      ||++++.
T Consensus       490 hIia~le  496 (503)
T KOG1488|consen  490 HIIAKLE  496 (503)
T ss_pred             HHHHHHH
Confidence            9988764

>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query764
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 2e-56
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 5e-56
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 7e-56
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 8e-54
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 6e-47
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 5e-10
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 8e-47
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-06
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 3e-45
1ib2_A 349 Crystal Structure Of A Pumilio-Homology Domain Leng 2e-13
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 4e-45
3bsb_A 343 Crystal Structure Of Human Pumilio1 In Complex With 3e-13
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 5e-44
2yjy_A 350 A Specific And Modular Binding Code For Cytosine Re 2e-13
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 7e-38
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 9e-21
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 7e-35
3k49_A 369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 2e-17
3qg9_A413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 4e-15
3k5q_A412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 5e-15
3qgb_A413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 3e-14
3v71_A382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 2e-11
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure 
Iteration: 1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/326 (39%), Positives = 196/326 (60%), Gaps = 21/326 (6%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
           +++  G I+ + KDQHGCRFLQ+++     +  + IF E  D+ VELMTD FGNYL+QKL
Sbjct: 30  LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKL 89
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
           LE    +QR+ +L  I+  +   V IS     TRA+QK+IE +K+ E+  +VV SL+P  
Sbjct: 90  LEEVTTEQRI-VLTKIS--SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYT 146
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
           V L K++NGNHV Q+CL  L PE  +F+F A +++C+++AT RHGCCV+Q+CL H   EQ
Sbjct: 147 VQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQ 206
Query: 623 RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD----ILDQLEGNYGDLSMQKY 678
              L  K+ +    L+ DPFGNYVVQ++          D    I+  L+    +LS+ K+
Sbjct: 207 CDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKF 266
Query: 679 SSNVVEKCLKYGDDERRAHIIQELISNA---HLDQVMLDPYGNYVIQAAL---QQSKGGV 732
            SNV+EK LK         +I E+++N     +  ++ D YGNYV+Q AL    +    +
Sbjct: 267 GSNVIEKILKTAIVSEP--MILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYL 324
Query: 733 HSALVDAIRP-HVPVLRTSPYGKKVL 757
           +  L + + P  V  +R +P+GK+++
Sbjct: 325 YKRLSEIVAPLLVGPIRNTPHGKRII 350
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query764
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-132
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-48
3gvo_A 351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 9e-34
3gvo_A 351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 7e-13
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-124
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 7e-43
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 3e-22
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-12
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-116
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 3e-28
3bwt_A 333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-20
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-100
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-32
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-88
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-33
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 8e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  394 bits (1014), Expect = e-132
 Identities = 106/335 (31%), Positives = 177/335 (52%), Gaps = 14/335 (4%)

Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
           L+  R        + ++ G I   ++DQHG RF+Q+K+   T  + + +F EI+    +L
Sbjct: 8   LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQL 67

Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPE 549
           MTD FGNY++QK  E  + DQ++ +   I    G ++ ++      R +QK +E++ S +
Sbjct: 68  MTDVFGNYVIQKFFEFGSLDQKLALATRI---RGHVLPLALQMYGCRVIQKALESISSDQ 124

Query: 550 QFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCC 609
           Q  +V   L   ++  +K+ NGNHV Q+C+  + P+  +F+  A       L+T  +GC 
Sbjct: 125 QSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCR 183

Query: 610 VIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
           VIQ+ L H   EQ   ++ ++  +   L QD +GNYV+Q V E   P     I+ ++ G 
Sbjct: 184 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 243

Query: 670 YGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAA 724
              LS  K++SNVVEKC+ +     RA +I E+       ++ L  +M D Y NYV+Q  
Sbjct: 244 VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKM 303

Query: 725 LQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSC 759
           +  ++      ++  IRPH+  LR   YGK +L+ 
Sbjct: 304 IDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK 338
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query764
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
Probab=100.00  E-value=4.6e-59  Score=506.53  Aligned_cols=324  Identities=33%  Similarity=0.535  Sum_probs=301.4

Q ss_pred             ccCCCCCCCccHHHhhhhHhhhccCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhcCHHHH
Q 004281          437 IIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR  516 (764)
Q Consensus       437 ~~r~~~~~~nsleEv~GkI~~LA~Dq~GSRvLQklLe~as~eq~~~If~eL~~~i~eLs~D~yGNhVVQKLLE~~s~eqr  516 (764)
                      ++|..+.....++++.|+++++|+|++|||+||++|+.+++++++.||+++.+++.+||+|+||||||||+|++++++++
T Consensus        10 ~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~   89 (351)
T 3gvo_A           10 DFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQK   89 (351)
T ss_dssp             HHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHH
T ss_pred             HHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHH
Confidence            34433333345889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHhh--hhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhccCCCchHHHHHHhccChhhhHHHHhhh
Q 004281          517 MQILQAITRKAGDLVRI--STRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT  594 (764)
Q Consensus       517 ~~Ii~~I~~~~g~Ll~l--s~rVVQKlIe~~~t~eq~~~IveeL~~~i~~L~~Dq~GNhVIQklLe~lspe~~~~IieaL  594 (764)
                      ..|++.+.++..++...  +|||||++++.+.++ +...+++++.+++.+|++|+|||||+|+++++++++.+.+|++.+
T Consensus        90 ~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~-~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~  168 (351)
T 3gvo_A           90 LALATRIRGHVLPLALQMYGCRVIQKALESISSD-QQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAF  168 (351)
T ss_dssp             HHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHT
T ss_pred             HHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH-HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999997544444332  299999999999755 557789999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcCcccchhhhhhhhcCChHHHHHHHHHHHHhHHHhhcCCCchHHHHHHHHhCChhhHHHHHHHHHHhhhccc
Q 004281          595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS  674 (764)
Q Consensus       595 ~~~iv~Ls~dkyGSrVVQkiLe~as~eqr~~Li~eL~~~l~~La~DqyGNyVIQ~LLe~~~~~~r~~II~~L~g~~veLS  674 (764)
                      .+++..+++|+|||+|+|+++++++++++..|+++|.+++..|++|+|||||||++|++++++.+..|++.|.+++..||
T Consensus       169 ~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls  248 (351)
T 3gvo_A          169 KGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALS  248 (351)
T ss_dssp             TTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHH
T ss_pred             HHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhHHHHHHHhhCCHHHHHHHHHHHHhc-----hhHHHhhcCCChhHHHHHHhhcCChhhHHHHHHHHhhhHHHHhc
Q 004281          675 MQKYSSNVVEKCLKYGDDERRAHIIQELISN-----AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRT  749 (764)
Q Consensus       675 ~~K~GS~VVEK~L~~a~~k~Rk~Ii~eLl~~-----~~L~~La~DqyGNyVIQkLL~~~~~~~r~~Lve~L~~~l~~L~~  749 (764)
                      +|||||+|||+||+.+++++|+.|+++++..     +.+..|+.|+|||||||++|+.+++++|..|++.|++++..|++
T Consensus       249 ~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~~~~L~~  328 (351)
T 3gvo_A          249 QHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK  328 (351)
T ss_dssp             TSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHTT
T ss_pred             cCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999862     36899999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHhh
Q 004281          750 SPYGKKVLSCNS  761 (764)
Q Consensus       750 skyGsrVV~kL~  761 (764)
                      ++||++|++++.
T Consensus       329 ~~~g~~i~~kl~  340 (351)
T 3gvo_A          329 YTYGKHILAKLE  340 (351)
T ss_dssp             STTTHHHHHHHH
T ss_pred             CCchHHHHHHHH
Confidence            999999998763
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 764
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 2e-84
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 7e-24
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 2e-22
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  269 bits (688), Expect = 2e-84
 Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 8/318 (2%)

Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
           + E+ G I   ++DQHG RF+Q K+   T  + + +F EI+    +LM D FGNY++QK 
Sbjct: 19  LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 78

Query: 508 LEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
            E  + +Q++ + + I      L       R +QK +E + S +Q  +V   L   ++  
Sbjct: 79  FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 137

Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
           +K+ NGNHV Q+C+  + P+  +F+  A       L+T  +GC VIQ+ L H   +Q   
Sbjct: 138 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 197

Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
           ++ ++  +   L QD +GNYV+Q V E   P     I+ ++ GN   LS  K++SNVVEK
Sbjct: 198 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 257

Query: 686 CLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
           C+ +     RA +I E+ +     ++ L  +M D Y NYV+Q  +  ++ G    ++  I
Sbjct: 258 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 317

Query: 741 RPHVPVLRTSPYGKKVLS 758
           RPH+  LR   YGK +L+
Sbjct: 318 RPHIATLRKYTYGKHILA 335
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query764
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-53  Score=450.30  Aligned_cols=314  Identities=33%  Similarity=0.553  Sum_probs=298.6

Q ss_pred             cHHHhhhhHhhhccCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhcCHHHHHHHHHHHHHh
Q 004281          447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRK  526 (764)
Q Consensus       447 sleEv~GkI~~LA~Dq~GSRvLQklLe~as~eq~~~If~eL~~~i~eLs~D~yGNhVVQKLLE~~s~eqr~~Ii~~I~~~  526 (764)
                      .+++++|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||.|+|||||||+|+++++++++..|++.+.++
T Consensus        18 ~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~~~~~~~~~i~~~l~~~   97 (339)
T d1m8za_          18 QLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH   97 (339)
T ss_dssp             CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTC
T ss_pred             cHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhhCCHHHHHHHHHHHHhh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhHHhhh--hHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhccCCCchHHHHHHhccChhhhHHHHhhhhhhhhhhhcC
Q 004281          527 AGDLVRIS--TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATD  604 (764)
Q Consensus       527 ~g~Ll~ls--~rVVQKlIe~~~t~eq~~~IveeL~~~i~~L~~Dq~GNhVIQklLe~lspe~~~~IieaL~~~iv~Ls~d  604 (764)
                      ...+....  |+|||++++.+.+. +...+++++.+++..++.|.+|+||++++++.++++.++++++.+.+.+.++++|
T Consensus        98 ~~~L~~~~~gs~Vvq~l~~~~~~~-~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~  176 (339)
T d1m8za_          98 VLSLALQMYGCRVIQKALEFIPSD-QQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTH  176 (339)
T ss_dssp             HHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHHHHHHTTTTHHHHHTS
T ss_pred             HHHHhcccccchHHHhhhccCCHH-HHHHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhC
Confidence            66665443  99999999998755 5556889999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhhcCChHHHHHHHHHHHHhHHHhhcCCCchHHHHHHHHhCChhhHHHHHHHHHHhhhccccCcchhHHHH
Q 004281          605 RHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE  684 (764)
Q Consensus       605 kyGSrVVQkiLe~as~eqr~~Li~eL~~~l~~La~DqyGNyVIQ~LLe~~~~~~r~~II~~L~g~~veLS~~K~GS~VVE  684 (764)
                      ++||+++|++++.++++++..+++++.+++..|++|+|||||||++|++++++.++.|++.|.+++.+|+.++|||+|||
T Consensus       177 ~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~gS~vve  256 (339)
T d1m8za_         177 PYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE  256 (339)
T ss_dssp             TTHHHHHHHHHHHSCHHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTCHHHHHTSTTHHHHHH
T ss_pred             cchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHcchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHHHHh-----chhHHHhhcCCChhHHHHHHhhcCChhhHHHHHHHHhhhHHHHhcCCchHHHHHH
Q 004281          685 KCLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSC  759 (764)
Q Consensus       685 K~L~~a~~k~Rk~Ii~eLl~-----~~~L~~La~DqyGNyVIQkLL~~~~~~~r~~Lve~L~~~l~~L~~skyGsrVV~k  759 (764)
                      +|+..++++.|+.++.+++.     .+.|..|+.|+|||||||++|+.++++++..|++.|++++++|+.++||++|+++
T Consensus       257 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~  336 (339)
T d1m8za_         257 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK  336 (339)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTGGGHHHHTTSSTHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhcccCchHHHHHHHcCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            99999999999999999874     3468999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 004281          760 NS  761 (764)
Q Consensus       760 L~  761 (764)
                      |.
T Consensus       337 l~  338 (339)
T d1m8za_         337 LE  338 (339)
T ss_dssp             HC
T ss_pred             Hh
Confidence            74
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure