Citrus Sinensis ID: 004286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760---
Protein Sequence
MATGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIPP
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHcccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHcEEEEccccccEEEEEEccccHHHHHHHHHHccccccHHHHHccccccccHHHHHHHHccHHHHHHHHHHcccHccccccccccHHHHHHHHccHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHEcccccccHHHHHcccccccccccccHHHHHHHHEcEccccccHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHccHHHHccccccccEEHHHHHccHHHHHHHHHHcccHHHHHHHHHccccccEEHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MATGIDIDQLKKGLFKSAMKGKWNEVVENygkddrihearitrsggTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLkigdergstplhiaaglgnvsmckciatadprligernhenetpfflaarhghkDAFLCLHYLCASvddgynysrrknGETILHYAISGYYFVDLAFQIIHLYEKLVNFVnergvsplhllatkpnafrsgshlglCTGIIYHCISvdklqeetsyDQHLFTTIKkqtnypenyETCLNFIRLLKTMVIVLFNrgntkkeptprdaedperskgndgtgdqgeesrhnigaqghqffppnygtcfEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRtslyeydyvggkplrrpssqveedetipyaivdggdtdadlegdqqpdtsltdhnvvtdthklsrnngknsedrneggktgstipdtvkretPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATlgdhkpwlipgaALQMQWELKWYEFVRDSMPFHFfvryndqnksakDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAftsssnvpggvngetgdpnlkdqLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKlksaafpvyavTCLPVTLFAIARFPLYYYLIWAIFKkvpqrsyqsipp
Flexible Loop (DISEMBL)
matgididqlkkglfksamkgkwNEVVEnygkddrihEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTtikkqtnypeNYETCLNFIRLLKTMVIVLFnrgntkkeptprdaedperskgndgtgdqGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGstkirkirdekqkhtwsvqildellrrTSLYEYDYVggkplrrpssqveedETIPYAIVDGGDTDADLEGDQQpdtsltdhnvvtdthklsrnngknsedrneggktgstipdtvkreTPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKvpqrsyqsipp
Low Complexity Region (SEG)
MATGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNvfafsslvalsfsMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIPP
Disordered region (IsUnstruct)
*********LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNR**************************************GHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGG******************AI***********************************************************ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSS***************LKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKV**********
Disordered Region (DISOPRED)
*ATGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKD******************QTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSY*****
Disordered Region (DISEMBL)
MATGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNT****************************RHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPL********EDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTH*******************GSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVP*********
Disordered Region (DISPRO)
****IDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRG**************************************HQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGG****************************************************************************VKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	763	2.2.26 [Sep-21-2011]
Q00653	900	Nuclear factor NF-kappa-B	yes	no	0.191	0.162	0.285	2e-06
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.187	0.114	0.322	3e-06
Q8BIZ1	1259	Ankyrin repeat and steril	yes	no	0.187	0.113	0.322	4e-06
Q6RI86	1125	Transient receptor potent	yes	no	0.188	0.128	0.290	4e-06
Q63369	522	Nuclear factor NF-kappa-B	no	no	0.188	0.275	0.292	5e-06
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.179	0.031	0.314	5e-06
P0C6S7	1260	Ankyrin repeat and steril	no	no	0.213	0.129	0.305	6e-06
P23631	1401	Alpha-latrotoxin-Lt1a OS=	N/A	no	0.192	0.104	0.299	7e-06
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.234	0.341	0.265	9e-06
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.179	0.069	0.320	1e-05

>sp|Q00653|NFKB2_HUMAN Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 80/200 (40%), Gaps = 54/200 (27%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA------------ 91
           +G T LH+A+  GQ  ++E +V +IH  Q L V+ + +    TPLH+A            
Sbjct: 487 NGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFL 546

Query: 92  -----------------------AGLGNVSMCKCI----ATADPRLIGERNHENETPFFL 124
                                  AG G   + + +    A A P+L+   + E   P  L
Sbjct: 547 LRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVHL 606

Query: 125 AARHGHKDAFLCLHYLCASVDDG--YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEK 182
           A R    +   CL  L   VD G     + R+ G T LH A       +L   + HL  K
Sbjct: 607 AVRARSPE---CLDLL---VDSGAEVEATERQGGRTALHLATE---MEELGL-VTHLVTK 656

Query: 183 LVNFVNER---GVSPLHLLA 199
           L   VN R   G +PLHL A
Sbjct: 657 LRANVNARTFAGNTPLHLAA 676

NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell types and is involved in many biological processed such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. In a non-canonical activation pathway, the MAP3K14-activated CHUK/IKKA homodimer phosphorylates NFKB2/p100 associated with RelB, inducing its proteolytic processing to NFKB2/p52 and the formation of NF-kappa-B RelB-p52 complexes. The NF-kappa-B heterodimeric RelB-p52 complex is a transcriptional activator. The NF-kappa-B p52-p52 homodimer is a transcriptional repressor. NFKB2 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p100 and generation of p52 by a cotranslational processing. The proteasome-mediated process ensures the production of both p52 and p100 and preserves their independent function. p52 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. p52 and p100 are respectively the minor and major form; the processing of p100 being relatively poor. Isoform p49 is a subunit of the NF-kappa-B protein complex, which stimulates the HIV enhancer in synergy with p65.
Homo sapiens (taxid: 9606)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
           SG TALH A  +G ++IV  L+      Q      + D +G  P+H+AA  G+V + K +
Sbjct: 58  SGYTALHHAALNGHKDIVLKLL------QYEASTNVADNKGYFPIHLAAWKGDVEIVKIL 111

Query: 104 ATADPR--LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
               P    + E+N+ENET    AA++GH +    L  L    D     S+    ET L 
Sbjct: 112 IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVL--LEELTDPTIRNSKL---ETPLD 166

Query: 162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
            A + Y  + +   II  +  L++  N R  +PLHL A
Sbjct: 167 LA-ALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAA 202

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
           SG TALH A  +G ++IV  L+      Q      + D +G  P+H+AA  G+V + K +
Sbjct: 58  SGYTALHHAALNGHKDIVLKLL------QYEASTNVADNKGYFPIHLAAWKGDVEIVKIL 111

Query: 104 ATADPR--LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
               P    + E+N+ENET    AA++GH +    L  L    D     S+    ET L 
Sbjct: 112 IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVL--LEELTDPTIRNSKL---ETPLD 166

Query: 162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
            A + Y  + +   II  +  L++  N R  +PLHL A
Sbjct: 167 LA-ALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAA 202

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH A   G    V +L+R    +H K + K          +PLH AA  G ++ C+
Sbjct: 414 GCTPLHYACRQGAPVSVNNLLRFNVSVHSKSKDK---------KSPLHFAASYGRINTCQ 464

Query: 102 CIA--TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI 159
            +    +D RL+ E +    TP  LAA++GH      L      +  G  +    NG T 
Sbjct: 465 RLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLL------LKKGALFLSDHNGWTA 518

Query: 160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA 204
           LH+A  G Y   +   I+    K  + ++E G + LH  A + +A
Sbjct: 519 LHHASMGGYTQTMKV-ILDTNLKCTDRLDEEGNTALHFAAREGHA 562

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus norvegicus GN=Nfkb1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA-- 104
           T LH+AV   QE++VEDL+R+  +      L + D  G++ LH+AA  G+  +   +   
Sbjct: 131 TPLHLAVITKQEDVVEDLLRVGAD------LSLLDRWGNSVLHLAAKEGHDKILGVLLKN 184

Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI 164
           +    LI   N E      +A      ++  CL  L A+  +  N   +K+G T LH A+
Sbjct: 185 SKAALLINHPNGEGLNAIHIAVM---SNSLSCLQLLVAAGAE-VNAQEQKSGRTALHLAV 240

Query: 165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK 201
             Y  + LA  ++   + LV+     G +PLH+ A +
Sbjct: 241 E-YDNISLAGCLLLEGDALVDSTTYDGTTPLHIAAGR 276

NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell types and is involved in many biological processed such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators. The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational processing. The proteasome-mediated process ensures the production of both p50 and p105 and preserves their independent function, although processing of NFKB1/p105 also appears to occur post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. Plays a role in the regulation of apoptosis. Isoform 5, isoform 6 and isoform 7 act as inhibitors of transactivation of p50 NF-kappa-B subunit, probably by sequestering it in the cytoplasm. Isoform 3 (p98) (but not p84 or p105) acts as a transactivator of NF-kappa-B-regulated gene expression. In a complex with MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by proteasome-dependent degradation of NFKB1/p105.

Rattus norvegicus (taxid: 10116)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI- 103
           G TALH+A   GQ E+V  LV+   +  Q++     D+   TPLHI+A LG   + + + 
Sbjct: 466 GETALHMAARSGQAEVVRYLVQ---DGAQVEAKAKDDQ---TPLHISARLGKADIVQQLL 519

Query: 104 -ATADPRLIGERNHENETPFFLAARHGHKD--AFLCLHYLCASVDDGYNYSRRKNGETIL 160
              A P       +   TP  L+AR GH+D  AFL  H    S+         K G T L
Sbjct: 520 QQGASPNAATTSGY---TPLHLSAREGHEDVAAFLLDHGASLSI-------TTKKGFTPL 569

Query: 161 HYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
           H A + Y  +++A  ++       +   + G++PLH+ A
Sbjct: 570 HVA-AKYGKLEVANLLLQ-KSASPDAAGKSGLTPLHVAA 606

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
           SG TALH A  +G ++IV  L+      Q      + D +G  P+H+AA  G+V + K +
Sbjct: 58  SGYTALHHAALNGHKDIVLKLL------QFEASTNVADNKGYFPIHLAAWKGDVEIVKIL 111

Query: 104 ATADPR--LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
               P    + E+N+ENET    AA++GH +    L  L    D     S+    ET L 
Sbjct: 112 IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVL--LEELTDPTIRNSKL---ETPLD 166

Query: 162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC 221
            A + Y  + +   II  +  L++  N R  +PLHL A   N  ++   + L  G+   C
Sbjct: 167 LA-ALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAAR--NGHKAVVQVLLEAGMDVSC 222

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|P23631|LATA_LATTR Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
           G T  H A   G ++I+  L  +    +    L   D++G TP+H+AA  GN  +   + 
Sbjct: 491 GRTVFHAAAKSGNDKIMFGLTFLAKSTE----LNQPDKKGYTPIHVAADSGNAGIVNLLI 546

Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI 164
                +  +  H  +TP  LAA+ G    F     L  S +   N  R K+G T LHYAI
Sbjct: 547 QRGVSINSKTYHFLQTPLHLAAQRGFVTTF---QRLMESPEININ-ERDKDGFTPLHYAI 602

Query: 165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK 201
            G   +  AF  ++     VN  +  G++P HL   K
Sbjct: 603 RGGERILEAF--LNQISIDVNAKSNTGLTPFHLAIIK 637

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 17/196 (8%)

Query: 14  LFKSAMKGKWNEVVENYGKDDRIHE----ARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
           L  +  +GK + ++E  G+ D +      A   +SG TAL++A   G  ++V+ L++  H
Sbjct: 21  LHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK--H 78

Query: 70  EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG 129
               L   K   + G    HIAA  GN+ +   +  A+P L    +    T    AA  G
Sbjct: 79  SDSVLAGTKA--KNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQG 136

Query: 130 HKDAFLCLHYLCASVDDGYNYS--RRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFV 187
           H +       +C  +D G + +   R NG+T LH A    + V +  ++I     +V  V
Sbjct: 137 HGE------IVCFLLDKGVDLAAIARSNGKTALHSAARNGHTV-IVKKLIEKKAGMVTRV 189

Query: 188 NERGVSPLHLLATKPN 203
           +++G + LH+     N
Sbjct: 190 DKKGQTALHMAVKGQN 205

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI- 103
           G TALH+A   GQ E+V  LV+   +  Q++     D+   TPLHI+A LG   + + + 
Sbjct: 449 GETALHMAARSGQAEVVRYLVQ---DGAQVEAKAKDDQ---TPLHISARLGKADIVQQLL 502

Query: 104 -ATADPRLIGERNHENETPFFLAARHGHKD--AFLCLHYLCASVDDGYNYSRRKNGETIL 160
              A P       +   TP  LAAR GH+D  AFL  H    S+         K G T L
Sbjct: 503 QQGASPNAATTSGY---TPLHLAAREGHEDVAAFLLDHGASLSI-------TTKKGFTPL 552

Query: 161 HYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
           H A + Y  +++A  ++       +   + G++PLH+ A
Sbjct: 553 HVA-AKYGKLEVASLLLQ-KSASPDAAGKSGLTPLHVAA 589

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
359479721	749	PREDICTED: uncharacterized protein LOC10	0.943	0.961	0.524	0.0
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.985	0.497	0.510	0.0
359476634	969	PREDICTED: uncharacterized protein LOC10	0.927	0.730	0.503	0.0
359495447	733	PREDICTED: uncharacterized protein LOC10	0.899	0.935	0.5	0.0
449490509	829	PREDICTED: uncharacterized LOC101211501	0.968	0.891	0.481	0.0
356546544	725	PREDICTED: uncharacterized protein LOC10	0.917	0.965	0.483	0.0
255554112	786	ankyrin repeat-containing protein, putat	0.967	0.938	0.468	0.0
147841950	714	hypothetical protein VITISV_026950 [Viti	0.903	0.964	0.457	0.0
359479727	663	PREDICTED: ankyrin repeat-containing pro	0.834	0.960	0.461	0.0
449444907	795	PREDICTED: uncharacterized protein LOC10	0.929	0.891	0.465	0.0

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/776 (52%), Positives = 531/776 (68%), Gaps = 56/776 (7%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
           +++ +KK LF+SAM+GKW+EVV  Y +++ +H A+IT+SG TALH+AVSD Q  IVE L+
Sbjct: 10  NMEVIKKKLFRSAMQGKWDEVVNIYKENEEVHMAKITKSGDTALHVAVSDDQARIVEQLL 69

Query: 66  RIIHEKQQLK-VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL 124
            II  K ++K VLKI +ERG+T LH+AA +G++ MCKCIA A P LIG RNH++ETP FL
Sbjct: 70  LIIRGKAKVKEVLKIQNERGNTILHLAASMGSMEMCKCIADALPDLIGARNHDSETPLFL 129

Query: 125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLV 184
           AA HG K+AF+CL  +C  +D G  Y RR +G+TILH AI+G YF DLAFQII  Y+ LV
Sbjct: 130 AALHGKKEAFICLDEICG-LDKGNTYCRRNDGDTILHCAIAGEYF-DLAFQIISRYKNLV 187

Query: 185 NFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQ 244
           N VNE+G+SPLHLLATK +AFRSGSH    T IIYHCI V+KL+EET             
Sbjct: 188 NSVNEQGLSPLHLLATKHSAFRSGSHFRWFTNIIYHCIFVEKLEEET------------- 234

Query: 245 TNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRH 304
             + +     L++               NT K+P      D E   GN        +++ 
Sbjct: 235 --FKQEEAISLSYFPF----------SANTGKDPGTGGQADLEDPSGNQSN----MKAKG 278

Query: 305 NIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELL 364
            + +QGHQ  P NY TCF  +K V K +LVILG G   ++K+R +K+KH W+ QILDELL
Sbjct: 279 ELQSQGHQLIPSNYHTCFNIIKFVFKAILVILGFGFKAVKKVRQKKEKHVWAAQILDELL 338

Query: 365 RRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVD--GGDTDADLEGDQQPDTSLTDHNV 422
              S YEY+  G  P ++PS + + D T PY+I D  G   D  LE    P  +    + 
Sbjct: 339 CHASFYEYEDNGRNP-QQPSQKKDAD-TTPYSISDDHGVSFDNTLESQHLPGGTAAQPSS 396

Query: 423 VT----------------DTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKN 466
            T                +  +   +NGKN ++  +  K      +  ++ETP+L+AAKN
Sbjct: 397 ATNQQGEDKGAPADRSSPEAQRKQNDNGKNKKNEQDKKKPS----EMERKETPLLVAAKN 452

Query: 467 GITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQ 526
           G+ EIVE+IL+ FPVAI D + +KKN++LLAVE RQ HVY+LL+K  ++++ VFR VD  
Sbjct: 453 GVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVLKDAVFRHVDID 512

Query: 527 GNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFT 586
           GNSALHLAA LG++KPWLIPGAALQMQWE+KWYEFV+ S+P HFFVR N + ++AKD+FT
Sbjct: 513 GNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCNQKGETAKDIFT 572

Query: 587 ETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNV 646
           E H  LVQAGG+WL +TSE+C+V+AALIATVAF +SS VPGGV  + G P L+D+ AF++
Sbjct: 573 EKHMDLVQAGGEWLFKTSESCSVVAALIATVAFATSSTVPGGVKEKVGTPTLEDEPAFDI 632

Query: 647 FAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWA 706
           FA SSLVAL FS+ A+++F AI TSR+QE+DFR  LP KLL+GLTSLFVSIASM+ISF A
Sbjct: 633 FAISSLVALCFSVNAVIMFLAILTSRYQERDFRIYLPRKLLVGLTSLFVSIASMLISFCA 692

Query: 707 GHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIP 762
           GH+ V+ DKL+  A  VYAVTCLPV  FA+A+FPLY+ L+WA FKKVPQRSY+  P
Sbjct: 693 GHYFVLMDKLQYTAILVYAVTCLPVIFFAVAQFPLYFDLMWATFKKVPQRSYKVAP 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/820 (51%), Positives = 548/820 (66%), Gaps = 68/820 (8%)

Query: 3   TGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVE 62
           T  +++ +KK LF+SAM+GKW+EVV  Y +++  H A+IT+SG TALH+AVSD Q  IVE
Sbjct: 7   TRXNMEVIKKKLFRSAMQGKWDEVVNIYKENEEAHMAKITKSGDTALHVAVSDDQARIVE 66

Query: 63  DLVRIIHEKQQLK-VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP 121
            L+ II  K ++K VLKI +ERG+T LH+AA +G++ MCKCIA A P LIG RNH++ETP
Sbjct: 67  QLLLIIRGKAKVKEVLKIQNERGNTXLHLAASMGSMEMCKCIADALPDLIGARNHDSETP 126

Query: 122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE 181
            FLAA HG K+AF+CL  +C  +D G    RR +G+TILH AI+G YF DLAFQII  Y+
Sbjct: 127 LFLAALHGKKEAFICLDEICG-LDKGNXXXRRNDGDTILHCAIAGEYF-DLAFQIIXRYK 184

Query: 182 KLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEET-SYDQHLFTT 240
            LVN VNE+G SPLHLLATK +AFRSGSH    T IIYHCI V+KL+EET   ++ +  T
Sbjct: 185 NLVNSVNEQGXSPLHLLATKHSAFRSGSHFRWFTNIIYHCIFVEKLKEETFKQEEXIVKT 244

Query: 241 IKKQTN--YPENYETCLNFIRL--LKTMVIVLF--------------------------- 269
             ++ +   PENY+TC+NF+RL  LK + + +                            
Sbjct: 245 FDEEKDPLXPENYQTCINFLRLPWLKFIXVWIXHCSYIFVFGTSISCILIKXPSLSLSPF 304

Query: 270 -----NRGNT------KKEPTPRDAEDPERSKGN----DGTGDQGE-ESRHNIGAQGHQF 313
                NR NT      +K       +DP R+ G     D +G+Q   +++  + +QGHQ 
Sbjct: 305 SVDPGNRPNTNLEQSDQKTTNANTGKDP-RTGGQADLEDPSGNQSNMKAKGELQSQGHQL 363

Query: 314 FPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYD 373
            P NY TCF  +K V K +LVILG G   ++K+R +K+KH W+ QILDELL   S YEY+
Sbjct: 364 IPSNYHTCFNIIKFVFKAILVILGFGFKAVKKVRQKKEKHVWAAQILDELLCHASFYEYE 423

Query: 374 YVGGKPLRRPSSQVEEDETIPYAIVD--GGDTDADLEGDQ-------QPDTSLT----DH 420
             G  P ++PS + + D T PY+I D  G   D  LE          QP ++      D 
Sbjct: 424 DNGRNP-QQPSQKKDAD-TTPYSISDDHGVSFDNTLESQHLXXGTAAQPSSAXNQQGEDK 481

Query: 421 NVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKR-ETPILIAAKNGITEIVEKILKSF 479
               D         +N   +N+  +     P  ++R ET +L+AAKNG+ EIVE+IL+ F
Sbjct: 482 GAPADQSSPEAQRKQNDNGKNKKNEQDKKKPSEMERKETXLLVAAKNGVVEIVERILELF 541

Query: 480 PVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD 539
           PVAI D + +KKN++LLAVE RQ HVY+LL+K  ++++ VFR VD  GNSALHLAA LG+
Sbjct: 542 PVAIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVLKDAVFRHVDIDGNSALHLAAMLGE 601

Query: 540 HKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQAGGQW 599
           +KPWLIPGAALQMQWE+KWYEFV+ S+P HFFVR N + ++AKD+FTE H  LVQAGG+W
Sbjct: 602 NKPWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCNXKGETAKDIFTEXHMDLVQAGGEW 661

Query: 600 LTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVALSFSM 659
           L +TSE+C+V+ ALIATVAF +S   PGGV  + G P L+D+ AF++FA SSLVAL FS+
Sbjct: 662 LFKTSESCSVVXALIATVAFATSXTXPGGVKEBVGTPTLEDEPAFDIFAISSLVALCFSV 721

Query: 660 TALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSA 719
            A+++F AI TSR QE+DFR  LP KLL+GLTSLFVSIASM+ISF AGH+ V+ DKL   
Sbjct: 722 NAVIMFLAILTSRXQERDFRIYLPRKLLVGLTSLFVSIASMLISFCAGHYFVLMDKLXYT 781

Query: 720 AFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQ 759
           A  VYAVTCLPV  FA+A+FPLY+ L+WA FKKVPQRSY+
Sbjct: 782 AILVYAVTCLPVIFFAVAQFPLYFDLMWATFKKVPQRSYK 821

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476634|ref|XP_002273692.2| PREDICTED: uncharacterized protein LOC100246246 [Vitis vinifera]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/758 (50%), Positives = 517/758 (68%), Gaps = 50/758 (6%)

Query: 1   MATGIDIDQ----LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG 56
           MA  ID D     +K+ LF SA+KGKW +VV+ Y +  R H+A++  SG TALH+AVS G
Sbjct: 1   MAFRIDQDSELEDIKETLFNSAIKGKWEDVVDLYRRQPRAHKAKMVVSGETALHMAVSAG 60

Query: 57  QEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH 116
           ++++VE LV +I E + ++ L IG++RG+TPLH+AA +GN  MC+ I+  D RL+  RN 
Sbjct: 61  KDDVVEQLVELISEPK-VEALSIGNDRGNTPLHLAASMGNAHMCRYISAIDTRLVAARNR 119

Query: 117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQI 176
           E ETP FLAA HGH DAFL L   C+S ++ Y Y RR +G+TILH AI+G YF DLA  I
Sbjct: 120 EKETPLFLAALHGHTDAFLWLREKCSS-NEPYEYCRRGDGKTILHCAIAGEYF-DLAILI 177

Query: 177 IHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYD-- 234
           I LYE LVN+V+++G++PLH+LA+KP AFRSG+HL     +IY CI VDKL+    Y   
Sbjct: 178 IDLYEDLVNYVDDKGLTPLHVLASKPTAFRSGTHLHFIERLIYECIYVDKLKTVEDYPCI 237

Query: 235 QHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDG 294
           Q +     +   YPENY TC+ F  ++K  V  +  R N        DA++PE       
Sbjct: 238 QQICAEKVELRRYPENYHTCMKFWNMIKRPVSHMIKRKNHGD----VDADNPELPVSR-- 291

Query: 295 TGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHT 354
                ++S H+ G   H+ FPPNYG C EF+K  +K MLV+LGLG  KIR+I D+K+KH+
Sbjct: 292 -----KDSHHHSG-DLHRAFPPNYGICLEFIKFANKAMLVVLGLGFGKIRRIVDKKEKHS 345

Query: 355 WSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPD 414
            S+QI+DELL   S Y Y+  G  P    S   E++ET PY   +    +A L    +  
Sbjct: 346 RSLQIMDELLSCASSYGYNKNGRNP--NLSQSGEDEETTPYK--EKWHLNALLISHPE-- 399

Query: 415 TSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEK 474
             L   N+ T+  +             E G            ETPILIAAKNGI E+V+ 
Sbjct: 400 --LNFMNLATEKKRTV-----------EFGNM----------ETPILIAAKNGIKEMVDS 436

Query: 475 ILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA 534
           IL+ FPVAI D N EKKNV+LLAVENRQ  VY++LLK  I++++VF  VD++GNSALHLA
Sbjct: 437 ILEKFPVAIHDRNKEKKNVVLLAVENRQPEVYEILLKKNILKDSVFGVVDNEGNSALHLA 496

Query: 535 ATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQ 594
           A LGD++PW IPGAALQMQWE+KWY+FV++SMP HFF  YN++N++ K++FT+ H +LV+
Sbjct: 497 AMLGDYQPWHIPGAALQMQWEIKWYKFVKNSMPPHFFSHYNNKNQTPKEIFTDHHDELVR 556

Query: 595 AGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVA 654
            GG+WL  TS +C+V+A LIATVAF +S+ +PG  N  TG PN + QLAFN+FA SSLVA
Sbjct: 557 RGGKWLNNTSSSCSVIATLIATVAFATSATIPGSFNEGTGRPNFEHQLAFNLFAISSLVA 616

Query: 655 LSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRD 714
           L FS+T++V+F AI +SR QE DF +DLP+KLLLGLT+LF+SI+++++SF AGHF ++RD
Sbjct: 617 LCFSVTSMVMFLAILSSRHQEDDFHRDLPQKLLLGLTTLFISISAILVSFCAGHFFILRD 676

Query: 715 KLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKK 752
           +LK AAFPVYA+TCLP+++FA+  FPLY+ ++W  F+K
Sbjct: 677 ELKRAAFPVYAITCLPISIFALVEFPLYFDVVWTTFRK 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/784 (50%), Positives = 502/784 (64%), Gaps = 98/784 (12%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
           +++ +K  LF+ AM+G+W EV+E Y  +   H A+IT    TALHIAV +G+E  VE +V
Sbjct: 9   ELEGIKTKLFERAMEGRWKEVIEIYKNNTMAHRAKITVLEDTALHIAVLEGKEAEVEKMV 68

Query: 66  RIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA 125
             I E  ++    I ++ G+TPLH+AA +GNVSMCKCIA  + RL+G RN +NETP FLA
Sbjct: 69  YQIGEDARM----IKNKMGNTPLHLAASIGNVSMCKCIANRNARLVGARNKKNETPLFLA 124

Query: 126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN 185
           A  G KDAFLCL  +C   D    + RR +GETILH AI+G YF DLAF II  + KL N
Sbjct: 125 ALQGKKDAFLCLLEICR--DQALEFCRRDDGETILHCAITGEYF-DLAFTIILEFPKLAN 181

Query: 186 FVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQT 245
           +VNE+G+SPLHLLA KP AFRSG+HL     IIY+  +  K  E T              
Sbjct: 182 YVNEQGLSPLHLLANKPTAFRSGTHLSWIDKIIYYSENAPKSGEHT-------------- 227

Query: 246 NYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHN 305
                                               DAE+P+  +G  G   QG +S  N
Sbjct: 228 ------------------------------------DAENPK--EGQAGPQHQGHQS--N 247

Query: 306 IGAQGHQFFPPNYGTCFEFVKLVSKPMLVIL----GLGSTKIRKIRDEKQKHTWSVQILD 361
           IGA G Q +PPNYG CFEF+KLV K ML IL    G GS KI++I  +KQKHTWS+QI+ 
Sbjct: 248 IGADGKQRYPPNYGICFEFIKLVCKGMLAILLSILGFGSNKIKRIIHKKQKHTWSIQIMK 307

Query: 362 ELLRRTSLYEYDYVGGKP------------------LRRPS---SQVEEDETIPYAIVDG 400
           ELL+ T  Y+Y   G  P                  +R PS   S +EED+T PY    G
Sbjct: 308 ELLQHTEEYKYYDTGSSPHQSPFLDEVETFLYAPNGVRMPSPHQSTLEEDKTTPYTAPTG 367

Query: 401 GDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNE--------GGKTGSTIPD 452
             +  D   D+   T+L +         +  N G  ++  N          GK       
Sbjct: 368 SSSPKDGRMDEI-KTALKN---TPSKSPMEANQGLENKKENAPVLNPVILAGKKTKKTEK 423

Query: 453 TVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKT 512
             K+ETPIL+AAKNGI E+V +IL  FPVAI DMNSE KN++LLAVENRQ HVY+LLL  
Sbjct: 424 VDKKETPILLAAKNGIAEMVREILDRFPVAIQDMNSEHKNMVLLAVENRQPHVYELLLNR 483

Query: 513 AIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFV 572
            I ++TVFR VD  GNSALHLAA L D+ PW IPGAALQMQWE+KW+++V++SMP HFF 
Sbjct: 484 KIQKDTVFRIVDKDGNSALHLAAMLRDNLPWHIPGAALQMQWEIKWFDYVKNSMPIHFFP 543

Query: 573 RYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGE 632
            YN  N++ K+VF E+HK+LV+ GG+WL  TS++C+V++ALIATVAF +S+ VPGG+  +
Sbjct: 544 HYNANNQTPKEVFNESHKELVEKGGKWLKATSDSCSVVSALIATVAFATSATVPGGIKED 603

Query: 633 TGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTS 692
           +G P L+ Q AF +FA SSLVAL FS+T++V+F AI TSR+Q +DFR+DLP KLLLGL+S
Sbjct: 604 SGKPILERQPAFRIFAISSLVALCFSVTSVVMFLAILTSRYQVKDFRRDLPRKLLLGLSS 663

Query: 693 LFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKK 752
           LFVSIA++++SF AGHF V++D+LK AAFPVYAVTCLPVT FAIA+FPLY  L+WA FKK
Sbjct: 664 LFVSIAAILVSFCAGHFFVLKDELKYAAFPVYAVTCLPVTFFAIAQFPLYLDLVWATFKK 723

Query: 753 VPQR 756
           VP+R
Sbjct: 724 VPKR 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490509|ref|XP_004158626.1| PREDICTED: uncharacterized LOC101211501 [Cucumis sativus]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/833 (48%), Positives = 534/833 (64%), Gaps = 94/833 (11%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
           ++D LKK LF  AMKG+W EVVE Y  D R  EA+IT+ G T LH+AVSDGQ  +VE+L+
Sbjct: 15  ELDYLKKYLFNKAMKGRWKEVVEKYATDSRAREAKITKRGDTVLHVAVSDGQVGVVEELM 74

Query: 66  RIIH--------EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE 117
           RII         E    +V++I + + +T LH+AA LGNV MC  IA+ D  L+G RN+E
Sbjct: 75  RIISGEEKKGGDESNSKRVVRIANNKSATALHLAATLGNVKMCYDIASVDHSLVGVRNNE 134

Query: 118 NETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQII 177
            ETP FLAA HG+KDAFLC+H  CA      +  R  +G+TILH AI     ++LA  II
Sbjct: 135 GETPLFLAALHGNKDAFLCIHSFCAQTT--VHCRRTIDGQTILHCAI-----MELALHII 187

Query: 178 HLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ-EETSYDQH 236
            LY++LVNFVNE+G +PLHLLATKP+AF+SG+HLG    I+YHCI VD+++ +  S+ + 
Sbjct: 188 KLYKELVNFVNEQGYTPLHLLATKPSAFKSGTHLGRWKMIVYHCIFVDEVKIDPKSFLRA 247

Query: 237 LFT---TIKKQTN------YPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPE 287
           L T   ++ +++N      YP NY TC N    L   + ++   G TKK     +A    
Sbjct: 248 LPTKPLSLHRRSNPNNEKLYPPNYTTCANLFNFLWKGIRMVCTVGKTKKNQNKNEA---- 303

Query: 288 RSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIR 347
           +   ND      EE    +       FP NY TCF F+KL SK +L+ +GLGS  I+KI 
Sbjct: 304 KKSINDAENPHPEEDDSTVRHYELAIFPENYATCFNFLKLFSKALLIFMGLGSRGIKKIE 363

Query: 348 DEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADL 407
           ++K+KH WS Q++++LL+  S+YEY+  G +P+    + +EE ET PY + DG  T  +L
Sbjct: 364 EKKEKHMWSFQVMNKLLQCASIYEYEDNGSRPME---TSIEE-ETQPYYVADGNVTFDEL 419

Query: 408 EGDQQP-----------DTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKT-----GSTIP 451
              Q              ++L + N++   H    ++   +E++ E   T      S+I 
Sbjct: 420 NIAQHEVQPPQDQPPPNISNLHNINIIDHDH----DHDYVAENKEEATTTIIVESKSSIG 475

Query: 452 DTV----------KRE-------------------------------TPILIAAKNGITE 470
           D +          K+E                               TP+LIAAKNG+ E
Sbjct: 476 DKILKYFPITIGDKKENKKLILKATTTKNTWKNTEDHLKNKQYSRQETPVLIAAKNGVVE 535

Query: 471 IVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSA 530
           +VEKIL  FPVAI D NSE+KN++LLAVENR  H+Y+LLL+  II+E+ FR VD QGNSA
Sbjct: 536 MVEKILHLFPVAIHDTNSEQKNIVLLAVENRHPHIYELLLRRNIIRESAFRMVDSQGNSA 595

Query: 531 LHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHK 590
           LHLAA LGDHKPWLIPGAALQMQWELKWY+FV+ SMP +FF  YN + K++K +F+ETH 
Sbjct: 596 LHLAAKLGDHKPWLIPGAALQMQWELKWYQFVKASMPSNFFPTYNKEGKTSKVLFSETHC 655

Query: 591 KLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFS 650
            LV++G +WLT TSE+C+++AALIATVAF +S+ VPGG +   G P L  + AFNVFA +
Sbjct: 656 DLVRSGEEWLTHTSESCSLVAALIATVAFATSATVPGGNDQNKGTPLLHGRPAFNVFAVA 715

Query: 651 SLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFL 710
           SL+AL  S+T+LV+F +I TSRFQ +DF  +LP KLLLGL+SLF+SIA+M++SF AGH+ 
Sbjct: 716 SLIALCCSVTSLVMFLSILTSRFQAKDFGGNLPTKLLLGLSSLFLSIAAMLVSFCAGHYF 775

Query: 711 VVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIPP 763
           V+ DKL  AA PVYAVTCLPVTLFAIA+FPLY  L+WA  KKVP RSY +I P
Sbjct: 776 VLSDKLHYAALPVYAVTCLPVTLFAIAQFPLYVDLVWATIKKVPTRSYSAISP 828

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546544|ref|XP_003541685.1| PREDICTED: uncharacterized protein LOC100798360 [Glycine max]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/776 (48%), Positives = 502/776 (64%), Gaps = 76/776 (9%)

Query: 7   IDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR 66
           ++   K LFK  MKG+W +VVE Y KD ++H A+ITR+G TALHIAV DGQ ++V  LVR
Sbjct: 1   MENTSKRLFKLCMKGEWGKVVETYSKDKKVHTAKITRTGDTALHIAVIDGQYDVVRQLVR 60

Query: 67  IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA 126
           +I E+     L+I +ER +T LH+AA +G+V MC+CIA+++P L+  RN + ETP FLAA
Sbjct: 61  LIPEE----ALRIQNERKNTALHLAASMGSVGMCECIASSEPSLLNMRNLDGETPLFLAA 116

Query: 127 RHGHKDAFLCLHYLCASVD----DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEK 182
            HG K  FLCLH+   ++     + Y+  RR +G+TILH AI+G YF DLAFQII LY  
Sbjct: 117 LHGRKHVFLCLHHRSNNIHTKDPNYYSNCRRNDGDTILHSAIAGDYF-DLAFQIIDLYGD 175

Query: 183 LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIK 242
           LVN VNE G++PLHLLA KP+ F+SG  LG    ++Y+ I          + Q L     
Sbjct: 176 LVNSVNEDGLTPLHLLANKPSVFKSGGRLGRFEALVYYVIK--------PFTQFL----- 222

Query: 243 KQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEES 302
            Q   P   +T    +                       D E  ++   N+G     E S
Sbjct: 223 -QKKLPPKDQTVTERV-----------------------DLEASKKVATNNGA--VTEAS 256

Query: 303 RHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDE 362
                 +    +P NY +C +  K V   M VI G GS  I KIR +K+KH WS QI+DE
Sbjct: 257 GSETSDRSRPLYPTNYNSCVDLFKFVFVVMSVIFGAGSANINKIRRKKEKHVWSAQIMDE 316

Query: 363 LLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGD-TDADLEGDQQPDTSLTDHN 421
           LL+R S+YEYD  G KPL+    +  + +T PY+   GG  T AD+  +QQ       H 
Sbjct: 317 LLKRASMYEYDDDGNKPLQNLGDK--DQQTDPYSFDGGGSVTLADITEEQQ-------HL 367

Query: 422 VVTDTHKLSRNNGKNSED----------------RNEGGKTGSTIPDTVKRETPILIAAK 465
            +    K  +  GK  E+                ++E  +  ST    V  ETPILIAAK
Sbjct: 368 TIKGEPKHQKIGGKKDENPLGSSLNLYCCHCTSKKDEKNEKISTKEKKV-LETPILIAAK 426

Query: 466 NGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQET-VFRKVD 524
           NG+TE+V KI+ SFPVA+ DM+++KKN++LLAVENRQ ++Y  LL    ++E+ +F KVD
Sbjct: 427 NGVTEMVAKIMDSFPVAVHDMDAKKKNIVLLAVENRQTYLYNFLLSKKNLKESNIFEKVD 486

Query: 525 DQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDV 584
           ++GNSALHLAA LGD+KPWLIPG ALQM WE+KWY FV+ SM  HFF  YN++NK+ +D+
Sbjct: 487 NEGNSALHLAAKLGDYKPWLIPGEALQMHWEIKWYLFVKGSMQPHFFSHYNNENKTPRDI 546

Query: 585 FTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAF 644
           F+ETHK LV++GG+WL +T+E+C+++AALIA VAF++S+NVPG    +TG P L+++  F
Sbjct: 547 FSETHKDLVRSGGEWLKKTAESCSLVAALIAAVAFSTSTNVPGDFKDDTGSPTLEERPEF 606

Query: 645 NVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISF 704
             FA +SL+AL  S+T+LV+F +I TSR+QE+DF K+LP KL+LGLTSLF+SI SMM+ F
Sbjct: 607 KAFAIASLIALCCSVTSLVLFLSILTSRYQERDFGKNLPRKLILGLTSLFMSITSMMVCF 666

Query: 705 WAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQS 760
            AGHF V++DKLKS AFPVYAVTCLPVTLFA+A+FPLY  L WA FKKVPQR Y++
Sbjct: 667 CAGHFFVLKDKLKSVAFPVYAVTCLPVTLFALAQFPLYIDLTWATFKKVPQRGYKT 722

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/787 (46%), Positives = 515/787 (65%), Gaps = 49/787 (6%)

Query: 13  GLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQ 72
           G+F+SAM G+W++VVE Y K+  + + RITRS  TA+HIAVSDG+ E+V  LV I  +  
Sbjct: 5   GIFESAMNGRWDQVVEAYKKNPSLEDGRITRSRNTAVHIAVSDGRTEVVSKLVEIFGDNA 64

Query: 73  QLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKD 132
             +VL I +E+G+TPLH+AA LG+  MC C+A  D  LI  RN E ETP FL+A HG K+
Sbjct: 65  S-RVLHIKNEKGNTPLHLAAKLGDAKMCYCLAARDRSLIRTRNSEGETPLFLSALHGKKN 123

Query: 133 AFLCLHYLC--ASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER 190
           AFLCLH+L   A  ++ Y+  R+ NG+TILH AISG YF  LAFQIIH Y  LV  VNE 
Sbjct: 124 AFLCLHFLYREAHKENDYSLCRKSNGDTILHSAISGEYF-SLAFQIIHNYPNLVTSVNES 182

Query: 191 GVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQT--NYP 248
           G+SPLH+LA+KPNAFRSG HL   + +IY C+ V ++Q+ET   +   +    +T   YP
Sbjct: 183 GLSPLHILASKPNAFRSGCHLPPFSRLIYCCLIVHEIQQETHNPEVWLSNSGNETGPKYP 242

Query: 249 ENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAED-PERSKG-NDGTGDQGEESRHNI 306
           +NY+TC++F   +K    +L     T++E           R KG ND   D  EE+   I
Sbjct: 243 QNYQTCMSFFSAIKRFFQIL---TRTEEESICHQVRQFLLRVKGENDKLKD--EENAQEI 297

Query: 307 GA-----------QGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTW 355
                        +  +F+PPNY T  +  K ++  +LVILG GS++I+ +R +K++H W
Sbjct: 298 SGLSYDRNLQEKEEKRRFYPPNYETSIQLFKFMANALLVILGFGSSRIKNVRAKKERHIW 357

Query: 356 SVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDT 415
           + Q+L+EL++R S Y Y+  G  P R    + + D +   A     + D   +  +    
Sbjct: 358 ATQLLNELVQRASSYTYENDGRNP-RNSWPKRDGDPSEFLAAPHISEVDKLTQSKEHIGL 416

Query: 416 SL--TDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTV------------------- 454
           S   T+  +  + H  +   G  +E  NE      T    +                   
Sbjct: 417 SCPTTNQEIRRENHGRAAKLGV-AEVVNESLDAYPTAVQELNTSQKNLVLLAFEKKETQK 475

Query: 455 --KRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKT 512
             K+ETPIL+AAK GITEIV+KIL ++P+AI D++S++KN +LLAVE+RQ  VY LLLK 
Sbjct: 476 FRKKETPILVAAKVGITEIVDKILDTYPLAIQDLDSDEKNAVLLAVEHRQTDVYNLLLKR 535

Query: 513 AIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFV 572
           A+++E+VFR++D  GNSALHLAA LGD++P L+PGAALQMQWE+KWY+FV++SMP HFFV
Sbjct: 536 AMVKESVFRQLDKHGNSALHLAAKLGDYRPKLVPGAALQMQWEIKWYKFVKNSMPPHFFV 595

Query: 573 RYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGE 632
           ++N Q ++ K++F  THK+LV  G +WLT+TSE+C+V+AAL+ATVAF +S+ +PGGVN E
Sbjct: 596 KHNSQGQTPKEIFIVTHKELVAKGSEWLTKTSESCSVVAALVATVAFATSATIPGGVNPE 655

Query: 633 TGDPNLKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTS 692
            G P L+++ AF VFA +SLVAL FS+TA++ F  I TSR+QE DF  DLP KL LGLTS
Sbjct: 656 NGAPILENEPAFEVFAIASLVALCFSVTAVIFFLTILTSRYQENDFAMDLPRKLFLGLTS 715

Query: 693 LFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKK 752
           LF SIAS+++SF AGHF V+++ L++AA+P+YA TCLP++ FA+++ PLY+ L  AI   
Sbjct: 716 LFTSIASILLSFCAGHFFVLKESLRTAAYPLYAATCLPISFFALSQLPLYFDLGRAILLD 775

Query: 753 VPQRSYQ 759
            PQRSY+
Sbjct: 776 EPQRSYK 782

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841950|emb|CAN67508.1| hypothetical protein VITISV_026950 [Vitis vinifera]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/781 (45%), Positives = 497/781 (63%), Gaps = 92/781 (11%)

Query: 1   MATGIDIDQ----LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG 56
           MA  ID D     +K+ LF SA+KGKW +VV+ Y +  R H+A++  SG TALH+AVS G
Sbjct: 1   MAFRIDQDSELEDIKETLFNSAIKGKWEDVVDLYRRQPRAHKAKMVVSGETALHMAVSAG 60

Query: 57  QEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH 116
           ++++VE LV +I E + ++ L IG++RG+TPLH+AA +GN  MC+ I+  D RL+  RN 
Sbjct: 61  KDDVVEQLVELISEPK-VEALSIGNDRGNTPLHLAASMGNAHMCRYISAIDTRLVAARNR 119

Query: 117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQI 176
           E ETP FLA  HGH DAFL L   C+  ++ Y Y RR +G+TILH AI+G YF DLA  I
Sbjct: 120 EKETPLFLAVLHGHTDAFLWLREKCSG-NEPYEYCRRGDGKTILHCAIAGEYF-DLAILI 177

Query: 177 IHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQH 236
           I LYE LVN+V+E+G++PLH+LA+KP AFRSG+HL     +IY CI VDKL         
Sbjct: 178 IDLYEDLVNYVDEKGLTPLHVLASKPTAFRSGTHLHFIERLIYECIYVDKL--------- 228

Query: 237 LFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTG 296
                K   +YP   E C   ++L +                                  
Sbjct: 229 -----KTVEDYPYIQEICEEKVKLRQ---------------------------------- 249

Query: 297 DQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGL--------------GSTK 342
                            +P NY TC  F  ++ +P+  ++                G  K
Sbjct: 250 -----------------YPENYHTCMNFWNIIKRPVSHMIKRKNHGDVDADNPELPGFGK 292

Query: 343 IRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGD 402
           IR+I D+K+KH+ S+QI+DELL R S Y Y+  G  P    S   E++ET P  ++    
Sbjct: 293 IRRIVDKKEKHSKSLQIMDELLSRASSYGYNKNGRNP--NLSQSGEDEETTPCNLLKEPT 350

Query: 403 TD----ADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRET 458
            +    +D   +++  +   +   V +  K +  +G + E  N          +    ET
Sbjct: 351 QENKPVSDSNRNEKEGSCSVNCPHVKNGSKDTSPSGSSLEITNMNRGEKKRTVEFGNMET 410

Query: 459 PILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQET 518
           PILIAAKNG+ E+V+ IL+ FPVAI D N EKKN++LLAVENRQ  VY+LLLK  I++++
Sbjct: 411 PILIAAKNGVKEMVDSILEKFPVAIHDRNKEKKNLVLLAVENRQPEVYELLLKKNILKDS 470

Query: 519 VFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQN 578
           VF  VD++GNSALHLAA LGD++PW IPGAALQMQWE+KWY+FV++SMP HFF  YN++N
Sbjct: 471 VFGVVDNEGNSALHLAAMLGDYQPWHIPGAALQMQWEIKWYKFVKNSMPPHFFSHYNNKN 530

Query: 579 KSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNL 638
           ++ K++FT+ H +LV+ GG+WL  TS +C+V+A LIATVAF +S+ +PG  N E G PN 
Sbjct: 531 QTPKEIFTDHHNELVRRGGKWLNNTSSSCSVIATLIATVAFATSATIPGSFNEEXGRPNF 590

Query: 639 KDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIA 698
           + QLAFN+FA SSLVAL FS+T++V+F AI +SR QE DF +DLP+KLLLGLT+LF+SI+
Sbjct: 591 EHQLAFNLFAISSLVALCFSVTSMVMFLAILSSRHQEDDFHRDLPKKLLLGLTTLFISIS 650

Query: 699 SMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSY 758
           ++++SF AGHF ++RD+LK AAFPVYA+TCLP+++FA+  FPLY+ ++W  F+KVP+R Y
Sbjct: 651 AVLVSFCAGHFFILRDELKRAAFPVYAITCLPISIFALVEFPLYFDVVWTTFRKVPRRRY 710

Query: 759 Q 759
           +
Sbjct: 711 K 711

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479727|ref|XP_002274066.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/769 (46%), Positives = 474/769 (61%), Gaps = 132/769 (17%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
           D+  +KK LF  AM+GKWNEVV  + +  R H+A I  SG TALH+AVS+G+E IVE+LV
Sbjct: 9   DLHTIKKNLFNYAMQGKWNEVVNIWRQHPRAHKAEIVVSGDTALHVAVSEGKESIVEELV 68

Query: 66  RIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA 125
            +I E  +L  L++ +E+G+TPLH+AA +GNV +CKC+A   P+L+G RNHENETP F A
Sbjct: 69  ELIRE-TELDALEMRNEQGNTPLHLAASMGNVPICKCLAGKHPKLVGVRNHENETPLFSA 127

Query: 126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN 185
             HG KDAFLCLH +C      Y YSRR +G+TILH AI G  F+DLAFQII+L E  V+
Sbjct: 128 VLHGRKDAFLCLHKICDRTKQ-YEYSRRADGKTILHCAIFGE-FLDLAFQIIYLNEDFVS 185

Query: 186 FVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQT 245
            V+E G +PLHLLA KP+AF+SG+HL   + IIY C+ V+KL++  SY+           
Sbjct: 186 SVDEEGFTPLHLLAGKPSAFKSGTHLSWISNIIYQCLIVEKLEKNESYNH---------- 235

Query: 246 NYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHN 305
                                  FNR +  K+P                           
Sbjct: 236 -----------------------FNRASDDKKPR-------------------------- 246

Query: 306 IGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLG-STKIRKIRDEKQK------------ 352
                   +P NYGTC  F K++  P  V +G G S       + K+K            
Sbjct: 247 --------YPDNYGTCMSFWKIIKVP--VSMGRGKSDDSMDAENPKEKGTRNIEKIKEKK 296

Query: 353 --HTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGD 410
             HTWS QI+DELL+R S+YEYD  G KPL   +SQ   DE                  +
Sbjct: 297 EKHTWSCQIMDELLQRASIYEYDRTGKKPL---ASQYYRDE------------------E 335

Query: 411 QQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITE 470
            +P+ S+    ++ D  K +R                       K +TPILIAAKNG+ E
Sbjct: 336 ARPENSV----LLADEKKKTRK--------------------LAKMDTPILIAAKNGVKE 371

Query: 471 IVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSA 530
           +VEKIL+ FPVAI D +SE+KN +LLAVENRQ  V+++L+K   +++TVF  VD++GNSA
Sbjct: 372 MVEKILELFPVAIHDRDSERKNAVLLAVENRQPEVFEVLVKRNFMRDTVFSAVDNEGNSA 431

Query: 531 LHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHK 590
           LHLAA L D  PW IPG ALQMQWE+KWY++V+ SMP HFF  +N+ N + K++FTE H 
Sbjct: 432 LHLAAMLRDTLPWHIPGHALQMQWEIKWYKYVKKSMPHHFFSHFNNHNMTPKEIFTEDHG 491

Query: 591 KLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFS 650
           +LV+ GG+WL  TS +C+V+AALIATVAF+S++++PG  N + G P L+    F +FA +
Sbjct: 492 ELVRKGGKWLNNTSSSCSVVAALIATVAFSSTASIPGSFNDKNGLPILEHATEFTIFAIA 551

Query: 651 SLVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFL 710
           SL+AL FS+T+L++F AI TSR QE+DF K LP+KL  GLT+LF+SI SM+ISF A H+L
Sbjct: 552 SLIALCFSVTSLIMFLAILTSRHQEKDFHKQLPKKLAWGLTALFISIGSMLISFCAAHYL 611

Query: 711 VVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQ 759
           V++DKL+  A PVYAV CLP+  FA+A+FPLY  L+ A  +KVPQRSY+
Sbjct: 612 VLKDKLQHVAGPVYAVACLPIAFFAVAQFPLYLDLLRATSRKVPQRSYK 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444907|ref|XP_004140215.1| PREDICTED: uncharacterized protein LOC101211501 [Cucumis sativus]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/829 (46%), Positives = 517/829 (62%), Gaps = 120/829 (14%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
           ++D LKK LF  AMKG+W EVVE Y  D R  EA+IT+ G T LH+AVSDGQ  +VE+L+
Sbjct: 15  ELDYLKKYLFNKAMKGRWKEVVEKYATDSRAREAKITKRGDTVLHVAVSDGQVGVVEELM 74

Query: 66  RIIH--------EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE 117
           RII         E    +V++I + + +T LH+AA LGNV MC  IA+ D  L+G RN+E
Sbjct: 75  RIISGEEKKGGDESNSKRVVRIANNKSATALHLAATLGNVKMCYDIASVDHSLVGVRNNE 134

Query: 118 NETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQII 177
            ETP FLAA HG+KDAFLC+H  CA      +  R  +G+TILH AI G +F +LA  II
Sbjct: 135 GETPLFLAALHGNKDAFLCIHSFCAQTT--VHCRRTIDGQTILHCAIMGDFF-ELALHII 191

Query: 178 HLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ-EETSYDQH 236
            LY++LVNFVNE+G +PLHLLATKP+AF+SG+HLG    I+YHCI VD+++ +  S+ + 
Sbjct: 192 KLYKELVNFVNEQGYTPLHLLATKPSAFKSGTHLGRWKMIVYHCIFVDEVKIDPKSFLRA 251

Query: 237 LFT---TIKKQTN------YPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPE 287
           L T   ++ +++N      YP NY TC N    L   + ++   G TKK     +A    
Sbjct: 252 LPTKPLSLHRRSNPNNEKLYPPNYTTCANLFNFLWKGIRMVCTVGKTKKNQNKNEA---- 307

Query: 288 RSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIR 347
           +   ND       E+ H  G++G                                I+KI 
Sbjct: 308 KKSINDA------ENPHPEGSRG--------------------------------IKKIE 329

Query: 348 DEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADL 407
           ++K+KH WS Q++++LL+  S+YEY+  G +P+    + +EE ET PY + DG  T  +L
Sbjct: 330 EKKEKHMWSFQVMNKLLQCASIYEYEDNGSRPME---TSIEE-ETQPYYVADGNVTFDEL 385

Query: 408 EGDQQPDTSLTDHNV--VTDTHKLS---RNNGKN--SEDRNEGGKT-----GSTIPDTVK 455
              Q       D     +++ H ++    ++G +  +E++ E   T      S+I D + 
Sbjct: 386 NIAQHEVQPPQDQPPPNISNLHNINIIDHDHGHDYVAENKEEATTTIIVESKSSIGDKIL 445

Query: 456 RETPI-----------------------------------------LIAAKNGITEIVEK 474
           +  PI                                         LIAAKNG+ E+VEK
Sbjct: 446 KYFPITIGDKKENKKLILKATTTKNTWKNTEDHLKNKQYSRQETPVLIAAKNGVVEMVEK 505

Query: 475 ILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA 534
           IL  FPVAI D NSE+KN++LLAVENR  H+Y+LLL+  II+E+ FR VD QGNSALHLA
Sbjct: 506 ILHLFPVAIHDTNSEQKNIVLLAVENRHPHIYELLLRRNIIRESAFRMVDSQGNSALHLA 565

Query: 535 ATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKKLVQ 594
           A LGDHKPWLIPGAALQMQWELKWY+FV+ SMP +FF  YN + K++K +F+ETH  LV+
Sbjct: 566 AKLGDHKPWLIPGAALQMQWELKWYQFVKASMPSNFFPTYNKEGKTSKVLFSETHCDLVR 625

Query: 595 AGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPNLKDQLAFNVFAFSSLVA 654
           +G +WLT TSE+C+++AALIATVAF +S+ VPGG +   G P L  + AFNVFA +SL+A
Sbjct: 626 SGEEWLTHTSESCSLVAALIATVAFATSATVPGGNDQNKGTPLLHGRPAFNVFAVASLIA 685

Query: 655 LSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLVVRD 714
           L  S+T+LV+F +I TSRFQ +DF  +LP KLLLGL+SLF+SIA+M++SF AGH+ V+ D
Sbjct: 686 LCCSVTSLVMFLSILTSRFQAKDFGGNLPTKLLLGLSSLFLSIAAMLVSFCAGHYFVLSD 745

Query: 715 KLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQRSYQSIPP 763
           KL  AA PVYAVTCLPVTLFAIA+FPLY  L+WA  KKVP RSY +I P
Sbjct: 746 KLHYAALPVYAVTCLPVTLFAIAQFPLYVDLVWATIKKVPTRSYSAISP 794

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.365	0.486	0.312	1.3e-44
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.382	0.484	0.308	4.9e-38
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.382	0.436	0.316	5.3e-38
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.370	0.815	0.298	2.2e-34
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.390	0.476	0.278	2.2e-32
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.179	0.197	0.320	2.1e-13
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.351	0.392	0.221	4.8e-12
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.234	0.341	0.270	6.9e-12
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.175	0.217	0.294	1.5e-10
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.191	0.217	0.274	1.7e-10

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 92/294 (31%), Positives = 167/294 (56%)

Query:   463 AAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRK 522
             AA+ G  EI+  +++S    +  +++  + +  +A   R  +++ L+ +   I++ +   
Sbjct:   262 AAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIASY 321

Query:   523 VDDQG-NSALHLAATLGD-HKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKS 580
              + Q  ++ LHL A L   ++  +  GAAL MQ EL W++ V++ +P  +    N + + 
Sbjct:   322 KEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGEL 381

Query:   581 AKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGD----- 635
             A D+FTE H+ L + G +W+ +T+ AC + A LIATV F ++  +PGG N ++GD     
Sbjct:   382 AHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGG-NDDSGDKANTL 440

Query:   636 --PNLKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSL 693
               PN + +L F+             M ++V+F +I TSR+ E+DFR DLP KL+ GL++L
Sbjct:   441 GFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSAL 500

Query:   694 FVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIW 747
             F+SI SM+++F     L+   +++ A+  +  ++CL  +L A+    LY++L W
Sbjct:   501 FISIISMILAFTFSMILI---RVEKASLSLVLISCL-ASLTALTFAYLYFHL-W 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 4.9e-38, Sum P(2) = 4.9e-38
 Identities = 91/295 (30%), Positives = 156/295 (52%)

Query:   460 ILIAAKNGITEIVEKILKSFPVAILDMN-SEKKNVMLLAVENRQRHVYQLLLKTAIIQET 518
             +L AAK+G  +   +I+K     +  +N +  +N+  LAVE ++  ++ L+      + T
Sbjct:   298 LLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVT 357

Query:   519 VFRKVDDQGNSALHLAATLGDHKPWL-IPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQ 577
             + R  D   N+ LH+A  L        I GAAL+MQ E +W++ V   +     V+ N  
Sbjct:   358 LLRSYDKGNNNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKD 417

Query:   578 NKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGDPN 637
             NK+ + +F   H+ L + G +W+  T+ AC+ +AALIATV F +   VPGG++G +G P 
Sbjct:   418 NKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPL 477

Query:   638 LKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSI 697
             + + L F                ++++F +I TSR+   DF   LP K++LG + LF+SI
Sbjct:   478 ILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISI 537

Query:   698 ASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKK 752
             ASM+++F       +R K  +  +P+  +   P  LF + ++PL   +I + + K
Sbjct:   538 ASMLVAFITSLSASMRHK-PALVYPLKPLASFPSLLFLMLQYPLLKEMISSTYGK 591

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
 Identities = 94/297 (31%), Positives = 152/297 (51%)

Query:   460 ILIAAKNGITE-IVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQET 518
             +L A + G  + +VE I  +  +      S    + LLAVE RQ  V+ LL      +  
Sbjct:   363 LLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYL 422

Query:   519 VFRKVDDQGNSALHLAATLGD-HKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQ 577
             +    D  GN  LHLA       K   + GA LQ+Q EL+W++ V    P     R N +
Sbjct:   423 LLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTE 482

Query:   578 NKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGET-GDP 636
              ++  ++FT+ H+ L Q   +W+  T+ +C+++AALI TV F +   VPGG +  + G P
Sbjct:   483 EQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKP 542

Query:   637 -NLKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFV 695
              +L+D+  F               T++++F  I T+R+   DF   LP K++ GL+ LFV
Sbjct:   543 FHLRDR-RFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFV 601

Query:   696 SIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKK 752
             SIA+M+I+F +  F ++  + K    P     CLP  LF + ++PL   +I++ + K
Sbjct:   602 SIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGK 658

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 89/298 (29%), Positives = 168/298 (56%)

Query:   458 TPILI--AAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAII 515
             +P+L+  AA++G  E++  +++S+P  I  ++ + +++  +A  NR   ++  + +   I
Sbjct:    31 SPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAI 90

Query:   516 QETV-FRKVDDQGNSALHLAATLGD-HKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVR 573
             ++ +   K  +  ++ LHL A L   ++  ++ GAALQMQ E+ WY+ V++ +P  +   
Sbjct:    91 KDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKT 150

Query:   574 YNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGET 633
              N + + A D+FT+ H  L + G +W+ +T+ AC +++ LIATV F ++  +PGG N  +
Sbjct:   151 KNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGG-NDTS 209

Query:   634 GD------PNLKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLPEKLL 687
             GD      P  + +  F              +T++++F +I TSR+ E  F+  LP KL+
Sbjct:   210 GDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLM 269

Query:   688 LGLTSLFVSIASMMISFWAGHFLVVRDKLK--SAAFPVYAVTCLPVTLFAIARFPLYY 743
             LGL +LFVSI SM+++F A   +++RD+    S    VY  +   ++ F +  F L++
Sbjct:   270 LGLLALFVSIISMVLAFTAT-LILIRDQEPKWSLILLVYVASATALS-FVVLHFQLWF 325

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
 Identities = 85/305 (27%), Positives = 153/305 (50%)

Query:   460 ILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETV 519
             +L A + G  + + +++K+    +    +    +   AV+ RQ  V+ LL      +   
Sbjct:   324 LLFAVRYGNVDFLVEMIKNNSELLWSTGTS--TLFNTAVQVRQEKVFSLLYGLGDRKYLF 381

Query:   520 FRKVDDQGNSALHLAA-TLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQN 578
                 D  GNS LHLA     ++K   +  A LQMQ EL+W++ +   +P     R N +N
Sbjct:   382 LADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTEN 441

Query:   579 KSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGETGD-PN 637
              +  ++F + H+ +     +W+  T+ +C+++AALI TV F +   VPGG +  +G  P 
Sbjct:   442 LTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPF 501

Query:   638 LKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSI 697
              + +  F               T++++F  I T+R+   DF   LP  ++ GL++LFVSI
Sbjct:   502 HRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSI 561

Query:   698 ASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIARFPLYYYLIWAIF-KKVPQR 756
             A+M+++F +  F +  D    A  P     C P  LF + ++PL   LI++ + K++  R
Sbjct:   562 AAMLVAFSSALFTIFNDPWIVA--PTIFFACFPALLFVMIQYPLLKELIFSTYGKRIFDR 619

Query:   757 SYQSI 761
             + +S+
Sbjct:   620 NMKSL 624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
 Identities = 49/153 (32%), Positives = 77/153 (50%)

Query:    53 VSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIG 112
             +SDG +E +E L       + + V +I    G + LH+A   G++ + K I    PRL+ 
Sbjct:   106 ISDGNKECLEKL-----RSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLL 160

Query:   113 ERNHENETPFFLAARHGHK---DAFLCL-----HYLCASVDDGYN-YSRR-KNGETILHY 162
             E+N   +TP  +AA  GH    +AF+ L       LC    +  N Y  + K+G T L+Y
Sbjct:   161 EQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYY 220

Query:   163 AISGYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
             AI G YF ++A  +++  +      N+ GVS L
Sbjct:   221 AIEGRYF-EMAVCLVNANQDAPFLGNKYGVSSL 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
 Identities = 65/294 (22%), Positives = 124/294 (42%)

Query:   459 PILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQET 518
             PI +A + G  ++V++I K  P + L +N + +N++ +A E+ +  + + L     I   
Sbjct:   341 PIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHL 400

Query:   519 VFRKVDDQGNSALHLAAT---------LGDHKPWLIPG----AALQM-QWELKWYEFVRD 564
                K D  GN+ LHLA           LG  K  LI       AL + + +L+ +   R+
Sbjct:   401 ANEK-DVDGNTPLHLATIYWRPRAVRELGGKKNLLIQNNNGLVALDIAESKLQPHYIFRE 459

Query:   565 SMPFHFFVRYNDQNKS-AKDVFTETHKKLVQAGGQWLTQTSEACTVMAALIATVAFTSSS 623
              +     V+ + QN         +T   + Q G +       A  V+AALI TV FTS  
Sbjct:   460 RLTLLALVQLHFQNDPRCAHTMIQTRPIMPQGGNK---DYINALLVVAALITTVTFTSGF 516

Query:   624 NVPGGVNGETGDPNLKDQLAFNXXXXXXXXXXXXXMTALVVFFAIKTSRFQEQDFRKDLP 683
              +PGG    T +  + + +                 T+ +   ++  ++  +    +   
Sbjct:   517 TIPGGFKDSTPNVGMANLITNPRLILFLIFDILALETSFLAVVSLILAQLGDPTLYQS-- 574

Query:   684 EKLLLGLTSLFVSIASMMISFWAGHFLVVRDKLKSAAFPVYAVTCLPVTLFAIA 737
               + + + SL+ ++  M ++F    F V+     +  + VY + CL  ++  +A
Sbjct:   575 -SVRVAMISLYFAMYFMTLAF----FFVMVIAAGNVRWLVYVIFCLIFSILTLA 623

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
 Identities = 53/196 (27%), Positives = 90/196 (45%)

Query:    14 LFKSAMKGKWNEVVENYGKDDRIH--E--ARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
             L  +  +GK + ++E  G+ D +   E  A   +SG TAL++A   G  ++V+ L++  H
Sbjct:    21 LHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK--H 78

Query:    70 EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG 129
                 L   K   + G    HIAA  GN+ +   +  A+P L    +    T    AA  G
Sbjct:    79 SDSVLAGTKA--KNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQG 136

Query:   130 HKDAFLCLHYLCASVDDGYNYSR--RKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFV 187
             H +       +C  +D G + +   R NG+T LH A    + V +  ++I     +V  V
Sbjct:   137 HGEI------VCFLLDKGVDLAAIARSNGKTALHSAARNGHTV-IVKKLIEKKAGMVTRV 189

Query:   188 NERGVSPLHLLATKPN 203
             +++G + LH+     N
Sbjct:   190 DKKGQTALHMAVKGQN 205

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 41/139 (29%), Positives = 74/139 (53%)

Query:    63 DLVRIIHE-KQQLKVL-KIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET 120
             D V ++      +KV  ++ D +G++ LHIAA LG+V + + I +  P L+   N   ET
Sbjct:    49 DKVSLLKRINDDVKVTQRLVDNQGNSILHIAAALGHVHIVEFIISTFPNLLQNVNLMGET 108

Query:   121 PFFLAARHGHKDAF-LCLHYLCASVD-DGYNYSRRKNGETILHYAISGYYFVDLAFQIIH 178
                +AAR G  +   + + ++  S   D +  ++ KNG+T LH A+ G + V++AF ++ 
Sbjct:   109 TLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALHAALKGKH-VEVAFCLVS 167

Query:   179 LYEKLVNFVNERGVSPLHL 197
             +   +    N    SPL++
Sbjct:   168 VKHDVSFDKNNDEASPLYM 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
 Identities = 45/164 (27%), Positives = 79/164 (48%)

Query:    53 VSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIG 112
             +S+G++E +E L           + ++    G + LHIAA  G++ + K I    P L+ 
Sbjct:    75 MSNGEKECLEKL-----RSNGTPMERVKSNTGDSILHIAAKWGHLELVKEIIFECPCLLF 129

Query:   113 ERNHENETPFFLAARHGHK---DAFLC-----LHYLCASVDDGYN--YSRRKNGETILHY 162
             E+N   +TP  +A   GH    +A +      L  L     +G N    + ++G T L+Y
Sbjct:   130 EQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLNPHVLKDEDGNTALYY 189

Query:   163 AISGYYFVDLAFQIIHLYEKLVNFV-NERGVSPLHLLATKPNAF 205
             AI G Y +++A  +++  +K   F+ N +G+S L+      N F
Sbjct:   190 AIEGRY-LEMATCLVNA-DKDAPFLGNNKGISSLYEAVDAGNKF 231

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023782001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (735 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	763
pfam13962	114	pfam13962, PGG, Domain of unknown function	9e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  104 bits (263), Expect = 9e-27
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 598 QWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGET-----GDPNLKDQL-AFNVFAFSS 651
           +WL +T  +  V+A LIATV F +    PGG   +      G P L  +   F  F  S+
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 652 LVALSFSMTALVVFFAIKTSRFQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLV 711
            +A   S+ A+++   I         F + LP +LL  LT L++S+ S+M++F AG + V
Sbjct: 62  TIAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 41  ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
               G T LH+A S+G  E+V+ L+           +   D  G TPLH+AA  G++ + 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA------DVNAKDNDGRTPLHLAAKNGHLEIV 56

Query: 101 KCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETIL 160
           K +       +  R+ +  TP  LAAR+G+ D    +  L     D     R K+G T L
Sbjct: 57  KLLLEKGA-DVNARDKDGNTPLHLAARNGNLD---VVKLLLKHGADVNA--RDKDGRTPL 110

Query: 161 HYAI 164
           H A 
Sbjct: 111 HLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 22/132 (16%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHE 70
           L  +A  G   EVV+     G D           G T LH+A  +G  EIV+ L+     
Sbjct: 11  LHLAASNGH-LEVVKLLLENGADVNAK----DNDGRTPLHLAAKNGHLEIVKLLL----- 60

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARH 128
            ++   +   D+ G+TPLH+AA  GN+ + K +    AD   +  R+ +  TP  LAA++
Sbjct: 61  -EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKN 116

Query: 129 GHKDAFLCLHYL 140
           GH +    +  L
Sbjct: 117 GHLE---VVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 49  LHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADP 108
           LH+A  +G  E+V+ L+         K   +      T LH+AA  GN+ + K +     
Sbjct: 1   LHLAAKNGNLELVKLLLE--------KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGA 52

Query: 109 RLIGERNHENETPFFLAARHGHKDAFLCLHYLC 141
             +  ++ +  T   LAAR+G+ +    +  L 
Sbjct: 53  D-VNAKDKDGNTALHLAARNGNLE---IVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 88  LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDG 147
           LH+AA  GN+ + K +      +      + +T   LAAR+G+ +    L    A V+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 148 YNYSRRKNGETILHYAIS 165
               + K+G T LH A  
Sbjct: 57  ----KDKDGNTALHLAAR 70

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 457 ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQ 516
            TP+ +AA NG  E+V+ +L+     +   +++ +  + LA +N    + +LLL+     
Sbjct: 8   RTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD- 65

Query: 517 ETVFRKVDDQGNSALHLAATLGDHK 541
                  D  GN+ LHLAA  G+  
Sbjct: 66  ---VNARDKDGNTPLHLAARNGNLD 87

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 113 ERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDL 172
            R+ +  TP  LAA +GH +    L    A V+      +  +G T LH A    + +++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-----KDNDGRTPLHLAAKNGH-LEI 55

Query: 173 AFQIIHLYEKLVNFVNERGVSPLHLLATK 201
              ++      VN  ++ G +PLHL A  
Sbjct: 56  VKLLLE-KGADVNARDKDGNTPLHLAARN 83

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 18/137 (13%)

Query: 34  DRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAA- 92
              H A     G   LH A S G ++IV+ L+           +   D  G TPLH+AA 
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLL------ASGADVNAKDADGDTPLHLAAL 115

Query: 93  ------GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDD 146
                 G   V+     A AD  +   R+ +  TP   AA +G  D    L  L A  D 
Sbjct: 116 NGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL--LEAGAD- 172

Query: 147 GYNYSRRKNGETILHYA 163
               SR   G T L  A
Sbjct: 173 --PNSRNSYGVTALDPA 187

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVML-LAVENRQRHVYQLLLKTAIIQ 516
           TP+ +AAKNG  EIV+ +L+    A ++   +  N  L LA  N    V +LLLK     
Sbjct: 42  TPLHLAAKNGHLEIVKLLLEKG--ADVNARDKDGNTPLHLAARNGNLDVVKLLLK----H 95

Query: 517 ETVFRKVDDQGNSALHLAATLGDHK 541
                  D  G + LHLAA  G  +
Sbjct: 96  GADVNARDKDGRTPLHLAAKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHE 70
           L  +A  G   E+V+     G D  + +        TALH+A  +G  EIV+ L+   H 
Sbjct: 1   LHLAAKNGNL-ELVKLLLEKGADVNLGDT------DTALHLAARNGNLEIVKLLLE--HG 51

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
                 +   D+ G+T LH+AA  GN+ + K
Sbjct: 52  AD----VNAKDKDGNTALHLAARNGNLEIVK 78

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 460 ILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVML-LAVENRQRHVYQLLLKTAIIQET 518
           + +AAKNG  E+V+ +L+       D+N    +  L LA  N    + +LLL+       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA----DVNLGDTDTALHLAARNGNLEIVKLLLE----HGA 52

Query: 519 VFRKVDDQGNSALHLAATLGDHK 541
                D  GN+ALHLAA  G+ +
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 84  GSTPLHIAAGLGNVSMCK-CIAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLH 138
           G T LH AA  G + + K  +    D   I   + +  T   +AA +G+ +    L 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 22  KWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQ-EEIVEDLVR-IIHEKQQLKVLKI 79
           K ++ +                 G T LH+A  +G   E   ++ + ++     L V  +
Sbjct: 83  KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142

Query: 80  GDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
            DE G+TPLH AA  G+  + + +  A ADP     RN    T    AA++G  +    L
Sbjct: 143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNS---RNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
           G TALH A   G+ E+V+ L+     ++ + + +  DE G+T LHIAA  GN+ + K 
Sbjct: 1   GRTALHKAAISGRLELVKYLL-----EKGVDINRT-DEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 451 PDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLL 510
            +    +T + +AA+NG  EIV K+L      +   + +    + LA  N    + +LLL
Sbjct: 23  VNLGDTDTALHLAARNGNLEIV-KLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLL 81

Query: 511 K 511
           +
Sbjct: 82  E 82

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	763
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.3
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.92
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.66
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
PF13606	30	Ank_3: Ankyrin repeat	98.49
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.46
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.42
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.36
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.87
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
KOG2384	223	consensus Major histocompatibility complex protein	97.81
KOG0511	516	consensus Ankyrin repeat protein [General function	97.59
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.42
KOG2505	591	consensus Ankyrin repeat protein [General function	96.36
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.86
KOG2505	591	consensus Ankyrin repeat protein [General function	95.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.67
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.84
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.74
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	80.39

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-45  Score=427.17  Aligned_cols=371  Identities=14%  Similarity=0.092  Sum_probs=228.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHc-----------------------------------
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSD-----------------------------------   55 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~-----------------------------------   55 (763)
                      .+|||.|+..|+.+.|+.+|.++|. .....|..|.||||+|+..                                   
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~-~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  120 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPE-LIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEA  120 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcc-cchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHH
Confidence            6788888888888888888877654 2345677788888866622                                   


Q ss_pred             -----------------------------------CCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHH
Q 004286           56 -----------------------------------GQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC  100 (763)
Q Consensus        56 -----------------------------------g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v  100 (763)
                                                         |+.+++++|++.|      ++++.+|..|+||||+|+..|+.++|
T Consensus       121 ~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G------advn~~d~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        121 CIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG------ADVNAKDIYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC------CCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                                               3344444444444      33444455555555555555555555


Q ss_pred             HHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhc
Q 004286          101 KCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLY  180 (763)
Q Consensus       101 ~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~  180 (763)
                      ++|+++|++ ++..+.+|.||||+|+..|+.+++++|++.+++++         .+.++|+.|+..++. +++++|++ .
T Consensus       195 ~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~---------~~~~~L~~ai~~~~~-~~~~~Ll~-~  262 (682)
T PHA02876        195 NLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN---------KNDLSLLKAIRNEDL-ETSLLLYD-A  262 (682)
T ss_pred             HHHHHCCCC-cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC---------CCcHHHHHHHHcCCH-HHHHHHHH-C
Confidence            555555544 44444455555555555555555555554444332         123445555555554 55555554 3


Q ss_pred             cccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHH
Q 004286          181 EKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRL  260 (763)
Q Consensus       181 ~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  260 (763)
                      |++++..|..|.||||+|+..++      ..+++++|+++|++++..+.              .+.+|++++...     
T Consensus       263 g~~vn~~d~~g~TpLh~Aa~~~~------~~~iv~lLl~~gadin~~d~--------------~g~TpLh~Aa~~-----  317 (682)
T PHA02876        263 GFSVNSIDDCKNTPLHHASQAPS------LSRLVPKLLERGADVNAKNI--------------KGETPLYLMAKN-----  317 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHhCCC------HHHHHHHHHHCCCCCCCcCC--------------CCCCHHHHHHHh-----
Confidence            55555555555555555555543      12455555555555554442              234444444221     


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccch
Q 004286          261 LKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGS  340 (763)
Q Consensus       261 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~  340 (763)
                                                                                          .           
T Consensus       318 --------------------------------------------------------------------g-----------  318 (682)
T PHA02876        318 --------------------------------------------------------------------G-----------  318 (682)
T ss_pred             --------------------------------------------------------------------C-----------
Confidence                                                                                1           


Q ss_pred             hHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCcccc
Q 004286          341 TKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTD  419 (763)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~  419 (763)
                                    ...++++.|+..|++.+ .|..|.||||+|+..+...                     .++.+|++
T Consensus       319 --------------~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~---------------------~iv~lLl~  363 (682)
T PHA02876        319 --------------YDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNK---------------------DIVITLLE  363 (682)
T ss_pred             --------------CCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcH---------------------HHHHHHHH
Confidence                          11267888888888655 4888999999887653322                     22333333


Q ss_pred             CccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHH
Q 004286          420 HNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVE  499 (763)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~  499 (763)
                      .|+                         +.+.+|..|.||||+|+..|+.++|+.|++ .+.+++..+..|+||||+|+.
T Consensus       364 ~ga-------------------------din~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        364 LGA-------------------------NVNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALC  417 (682)
T ss_pred             cCC-------------------------CCccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHH
Confidence            333                         344577889999999999999999999998 566678888899999999987


Q ss_pred             cCC-hHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC-CCCcCCchhhhhhhhhhHHHHHHhhcCCccccccccCC
Q 004286          500 NRQ-RHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD-HKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQ  577 (763)
Q Consensus       500 ~~~-~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~  577 (763)
                      .++ ..++++|++.++    ++|.+|.+|+||||+|++.|. ..++.             .  .++...+   .+.+|.+
T Consensus       418 ~~~~~~~vk~Ll~~ga----din~~d~~G~TpLh~Aa~~~~~~~iv~-------------l--Ll~~Gad---~n~~d~~  475 (682)
T PHA02876        418 GTNPYMSVKTLIDRGA----NVNSKNKDLSTPLHYACKKNCKLDVIE-------------M--LLDNGAD---VNAINIQ  475 (682)
T ss_pred             cCCHHHHHHHHHhCCC----CCCcCCCCCChHHHHHHHhCCcHHHHH-------------H--HHHCCCC---CCCCCCC
Confidence            665 467899999887    688999999999999998763 22211             1  2222233   4578999


Q ss_pred             CCChhhhhhh
Q 004286          578 NKSAKDVFTE  587 (763)
Q Consensus       578 g~tp~d~~~~  587 (763)
                      |.||+.++.+
T Consensus       476 g~tpl~~a~~  485 (682)
T PHA02876        476 NQYPLLIALE  485 (682)
T ss_pred             CCCHHHHHHH
Confidence            9999988764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.7e-44  Score=380.48  Aligned_cols=304  Identities=24%  Similarity=0.265  Sum_probs=204.0

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC
Q 004286           38 EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE  117 (763)
Q Consensus        38 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  117 (763)
                      ....|..|.||||+|+.....+.++.|++.|      ++++..|.++.+|+|+|+..|+.++.+.|++++++ +|..|..
T Consensus        81 ~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~g------ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~  153 (929)
T KOG0510|consen   81 SYAKDSADNTPLHAAVEYNQGDKIQVLLSYG------ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDEN  153 (929)
T ss_pred             hhhhhcccCchhHHHhhcchHHHHHHHHhcC------CCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccC
Confidence            3445666677777777777777777777766      55666666777777777777777777777777766 6777777


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhc----cccccccccCCCc
Q 004286          118 NETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLY----EKLVNFVNERGVS  193 (763)
Q Consensus       118 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~----~~~~~~~d~~G~T  193 (763)
                      |.||||+||..++.|..+.|++.|+++-     ..|.+|.+|+|.|++.|.. |+.+..+.++    +..+|..|.+|.|
T Consensus       154 ~~TpLh~A~~~~~~E~~k~Li~~~a~~~-----K~~~~~~~~iH~aa~s~s~-e~mEi~l~~~g~~r~~~in~~~n~~~~  227 (929)
T KOG0510|consen  154 GFTPLHLAARKNKVEAKKELINKGADPC-----KSDIDGNFPIHEAARSGSK-ECMEIFLPEHGYERQTHINFDNNEKAT  227 (929)
T ss_pred             CCchhhHHHhcChHHHHHHHHhcCCCCC-----cccCcCCchHHHHHHhcch-hhhhhhhccccchhhcccccccCCCCc
Confidence            7777777777777776667777777666     5666777777777777776 7777766622    3356666677777


Q ss_pred             HHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCC
Q 004286          194 PLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGN  273 (763)
Q Consensus       194 pLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~  273 (763)
                      |||.|++.|+       ++.++.+++.|+....+..+                                           
T Consensus       228 pLhlAve~g~-------~e~lk~~L~n~~~~a~~~~~-------------------------------------------  257 (929)
T KOG0510|consen  228 PLHLAVEGGD-------IEMLKMCLQNGKKIADVQLD-------------------------------------------  257 (929)
T ss_pred             chhhhhhcCC-------HHHHHHHHhCccccchhhhH-------------------------------------------
Confidence            7777777663       56666666665443321100                                           


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhh
Q 004286          274 TKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKH  353 (763)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~  353 (763)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (929)
T KOG0510|consen  258 --------------------------------------------------------------------------------  257 (929)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccC
Q 004286          354 TWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNN  433 (763)
Q Consensus       354 ~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~  433 (763)
                        +.+-.+.|+.     ..|.+|+||||+|+..|+                      ...++.|+..|+           
T Consensus       258 --~~~q~kelv~-----~~d~dg~tpLH~a~r~G~----------------------~~svd~Ll~~Ga-----------  297 (929)
T KOG0510|consen  258 --AMQQEKELVN-----DEDNDGCTPLHYAARQGG----------------------PESVDNLLGFGA-----------  297 (929)
T ss_pred             --HHHHHHHHhh-----cccccCCchHHHHHHcCC----------------------hhHHHHHHHcCC-----------
Confidence              0112222322     357778888888887744                      334444444444           


Q ss_pred             CCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHH-hCCccccccccCCCchhHHHHHcCChHHHHHHHhc
Q 004286          434 GKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILK-SFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKT  512 (763)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~-~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~  512 (763)
                                    ..+.+++++.||||.||++|+.+.|+.||+ ..-...+..|-.|+||||+|+++||..++++|++.
T Consensus       298 --------------~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  298 --------------SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             --------------cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc
Confidence                          445567788888888888888888888888 44445666777888888888888888888888888


Q ss_pred             cchhhhhhc--cccCCCCchhhhHhhcCCCC
Q 004286          513 AIIQETVFR--KVDDQGNSALHLAATLGDHK  541 (763)
Q Consensus       513 ~~~~~~~~n--~~D~~G~TpLH~Aa~~g~~~  541 (763)
                      |+.   ..+  ..|.+|+||||+|++.|+.+
T Consensus       364 GA~---~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  364 GAL---FLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             Chh---hhcccccccCCchhhhHHHHhccHH
Confidence            874   233  45888888888888888744

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.6e-44  Score=391.68  Aligned_cols=356  Identities=16%  Similarity=0.125  Sum_probs=258.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHH--cCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVS--DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      +--+++.+...++.+.++.++...       ....+.++||.++.  .++.++|++|+++|      +++|.+|.+|+||
T Consensus         9 ~~~sl~~~~~~~n~~~~~~~l~~~-------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~G------advn~~d~~G~Tp   75 (446)
T PHA02946          9 YYLSLYAKYNSKNLDVFRNMLQAI-------EPSGNYHILHAYCGIKGLDERFVEELLHRG------YSPNETDDDGNYP   75 (446)
T ss_pred             HHHHHHHHHccCcHHHHHHHHhcc-------CCCCCChHHHHHHHhcCCCHHHHHHHHHCc------CCCCccCCCCCCH
Confidence            344677788888888888888651       12234789988774  34678999999988      6688889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH--KDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      ||+|+..|+.++|++|+++|++ ++.+|.+|.||||+|+..++  .+++++|+++|++++.    ..|..|.|||| |+.
T Consensus        76 Lh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~----~~d~~g~tpL~-aa~  149 (446)
T PHA02946         76 LHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN----SVDEEGCGPLL-ACT  149 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc----ccCCCCCcHHH-HHH
Confidence            9999999999999999999988 88899999999999887654  7889999999998872    35888999997 566


Q ss_pred             cCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccC
Q 004286          166 GYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQT  245 (763)
Q Consensus       166 ~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  245 (763)
                      .++. +++++|++ .|++++.+|..|+||||+|+..++.     +.+++++|+++|++++..+.              .+
T Consensus       150 ~~~~-~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~-----~~~~v~~Ll~~Gadin~~d~--------------~G  208 (446)
T PHA02946        150 DPSE-RVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNP-----KASTISWMMKLGISPSKPDH--------------DG  208 (446)
T ss_pred             CCCh-HHHHHHHh-ccccccccCCCCCCHHHHHHHhcCC-----CHHHHHHHHHcCCCCcccCC--------------CC
Confidence            6888 89999998 5889999999999999998876542     56889999999999987773              36


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHH
Q 004286          246 NYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFV  325 (763)
Q Consensus       246 ~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~  325 (763)
                      .+|+|++...+                                                                     
T Consensus       209 ~TpLH~Aa~~~---------------------------------------------------------------------  219 (446)
T PHA02946        209 NTPLHIVCSKT---------------------------------------------------------------------  219 (446)
T ss_pred             CCHHHHHHHcC---------------------------------------------------------------------
Confidence            67888774311                                                                     


Q ss_pred             hhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCC-ceeccCCCCCCCCCCCCcccccCcccccccCCCCC
Q 004286          326 KLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSL-YEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTD  404 (763)
Q Consensus       326 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~-~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~  404 (763)
                                                  ....++++.|++ +++ ...|.+|+||||+|+..++..+.+...+.+|++..
T Consensus       220 ----------------------------~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        220 ----------------------------VKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             ----------------------------CCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence                                        001256777775 443 34578888888888877553222222222443221


Q ss_pred             CCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCcccc
Q 004286          405 ADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAIL  484 (763)
Q Consensus       405 ~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~  484 (763)
                      ...      ..+....+. ..+..++...                  .+..|.||||+|+++|+.++|++||+++     
T Consensus       271 ~~~------~~~a~~~~~-~~~~e~l~~~------------------g~~~~~TpLh~Aa~~g~~eivk~Ll~~~-----  320 (446)
T PHA02946        271 DQT------VNICIFYDR-DDVLEIINDK------------------GKQYDSTDFKMAVEVGSIRCVKYLLDND-----  320 (446)
T ss_pred             CcH------HHHHHHcCc-hHHHHHHHHc------------------CcccCCCHHHHHHHcCCHHHHHHHHHCC-----
Confidence            100      000000000 0000111000                  1235889999999999999999999953     


Q ss_pred             ccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCC
Q 004286          485 DMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHK  541 (763)
Q Consensus       485 ~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~  541 (763)
                         .+|+||||+|+.+++.+++++|+.+++    ++|.+ .+|+||||+|++.++..
T Consensus       321 ---~~~~t~L~~A~~~~~~~~v~~Ll~~ga----~~n~~-~~G~t~l~~a~~~~~~~  369 (446)
T PHA02946        321 ---IICEDAMYYAVLSEYETMVDYLLFNHF----SVDSV-VNGHTCMSECVRLNNPV  369 (446)
T ss_pred             ---CccccHHHHHHHhCHHHHHHHHHHCCC----CCCCc-cccccHHHHHHHcCCHH
Confidence               358999999999999999999999998    68875 68999999999999844

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2e-42  Score=378.74  Aligned_cols=335  Identities=14%  Similarity=0.096  Sum_probs=266.2

Q ss_pred             hHHHHHHHH-c-CCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286           11 KKGLFKSAM-K-GKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus        11 ~~~L~~aa~-~-g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      .+.||.++. . ++.+.++.++..  |++++.+|.+|+||||+||..|+.++|++|+++|      ++++.+|..|+|||
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G------Adin~~d~~g~TpL  109 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHR--GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG------ADPNACDKQHKTPL  109 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHC--cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc------CCCCCCCCCCCCHH
Confidence            356676553 3 344566666666  8999999999999999999999999999999998      77999999999999


Q ss_pred             HHHHHcCC--HHHHHHHHhcCCCccC-CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           89 HIAAGLGN--VSMCKCIATADPRLIG-ERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        89 h~Aa~~g~--~~~v~~Ll~~~~~~~~-~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      |+|+..++  .+++++|+++|++ ++ ..|..|.|||| ||..|+.+++++|+++|++++     .+|..|+||||+|+.
T Consensus       110 h~A~~~~~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-----~~d~~G~t~Lh~A~~  182 (446)
T PHA02946        110 YYLSGTDDEVIERINLLVQYGAK-INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-----IVDKFGKNHIHRHLM  182 (446)
T ss_pred             HHHHHcCCchHHHHHHHHHcCCC-cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-----ccCCCCCCHHHHHHH
Confidence            99998764  8999999999999 66 47899999997 777899999999999999998     899999999999987


Q ss_pred             cC--ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccc
Q 004286          166 GY--YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKK  243 (763)
Q Consensus       166 ~g--~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  243 (763)
                      .+  +. +++++|++ .|++++.+|.+|.||||+|+..+..     ..+++++|++ |+++|..+.              
T Consensus       183 ~~~~~~-~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~-----~~~iv~lLl~-gadin~~d~--------------  240 (446)
T PHA02946        183 SDNPKA-STISWMMK-LGISPSKPDHDGNTPLHIVCSKTVK-----NVDIINLLLP-STDVNKQNK--------------  240 (446)
T ss_pred             hcCCCH-HHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCC-----cHHHHHHHHc-CCCCCCCCC--------------
Confidence            54  46 89999999 5999999999999999999987631     4789999985 899998874              


Q ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhh
Q 004286          244 QTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFE  323 (763)
Q Consensus       244 ~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~  323 (763)
                      .+.||++++...+...   .+++.+++.++.....                                         + .+
T Consensus       241 ~G~TpLh~A~~~~~~~---~~~~~Ll~~g~~~~~~-----------------------------------------~-~~  275 (446)
T PHA02946        241 FGDSPLTLLIKTLSPA---HLINKLLSTSNVITDQ-----------------------------------------T-VN  275 (446)
T ss_pred             CCCCHHHHHHHhCChH---HHHHHHHhCCCCCCCc-----------------------------------------H-HH
Confidence            4789999887653321   2233344443221100                                         0 11


Q ss_pred             HHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCC
Q 004286          324 FVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDT  403 (763)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~  403 (763)
                      .+.                          .....++++.+.+++.     ..|+||||+|+..++               
T Consensus       276 ~a~--------------------------~~~~~~~~e~l~~~g~-----~~~~TpLh~Aa~~g~---------------  309 (446)
T PHA02946        276 ICI--------------------------FYDRDDVLEIINDKGK-----QYDSTDFKMAVEVGS---------------  309 (446)
T ss_pred             HHH--------------------------HcCchHHHHHHHHcCc-----ccCCCHHHHHHHcCC---------------
Confidence            110                          0012256777777653     357899999999855               


Q ss_pred             CCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccc
Q 004286          404 DADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAI  483 (763)
Q Consensus       404 ~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~  483 (763)
                             .+++++|++++.                                +|.||||+|+.+|+.++|++|+. .+.++
T Consensus       310 -------~eivk~Ll~~~~--------------------------------~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~  349 (446)
T PHA02946        310 -------IRCVKYLLDNDI--------------------------------ICEDAMYYAVLSEYETMVDYLLF-NHFSV  349 (446)
T ss_pred             -------HHHHHHHHHCCC--------------------------------ccccHHHHHHHhCHHHHHHHHHH-CCCCC
Confidence                   457777776655                                58999999999999999999999 56677


Q ss_pred             cccccCCCchhHHHHHcCChHHHHHHHhccc
Q 004286          484 LDMNSEKKNVMLLAVENRQRHVYQLLLKTAI  514 (763)
Q Consensus       484 ~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~  514 (763)
                      +.. .+|.||||+|++.++.++++.|+.+.+
T Consensus       350 n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        350 DSV-VNGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             CCc-cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence            775 589999999999999999999998654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-42  Score=402.28  Aligned_cols=341  Identities=17%  Similarity=0.102  Sum_probs=292.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..+.++.++..|+.+.++.|+..  |++++.+|..|+||||+||..|+.++|++|+++|      ++++..+..|.||||
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G------ad~n~~~~~g~t~L~  216 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEG--GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYG------ADVNIIALDDLSVLE  216 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC------CCcCccCCCCCCHHH
Confidence            35677888889998888888877  8999999999999999999999999999999998      678899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.++++.|++.+++ ++    .+.++|+.|+..++.+++++|++.|++++     ..|..|.||||+|+..++.
T Consensus       217 ~A~~~~~~~ivk~Ll~~~~~-~~----~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-----~~d~~g~TpLh~Aa~~~~~  286 (682)
T PHA02876        217 CAVDSKNIDTIKAIIDNRSN-IN----KNDLSLLKAIRNEDLETSLLLYDAGFSVN-----SIDDCKNTPLHHASQAPSL  286 (682)
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CC----CCcHHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHhCCCH
Confidence            99999999999999998876 43    35689999999999999999999999998     8899999999999999997


Q ss_pred             HHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCc
Q 004286          170 VDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPE  249 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~  249 (763)
                      .+++++|++ .|++++.+|.+|.||||+|+..|.      ..++++.|+..|++++..+..              +.+|+
T Consensus       287 ~~iv~lLl~-~gadin~~d~~g~TpLh~Aa~~g~------~~~~v~~Ll~~gadin~~d~~--------------g~TpL  345 (682)
T PHA02876        287 SRLVPKLLE-RGADVNAKNIKGETPLYLMAKNGY------DTENIRTLIMLGADVNAADRL--------------YITPL  345 (682)
T ss_pred             HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCC------CHHHHHHHHHcCCCCCCcccC--------------CCcHH
Confidence            468888888 599999999999999999999874      369999999999999987743              56777


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhcc
Q 004286          250 NYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVS  329 (763)
Q Consensus       250 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~  329 (763)
                      +++...+                                                                         
T Consensus       346 h~A~~~~-------------------------------------------------------------------------  352 (682)
T PHA02876        346 HQASTLD-------------------------------------------------------------------------  352 (682)
T ss_pred             HHHHHhC-------------------------------------------------------------------------
Confidence            7774321                                                                         


Q ss_pred             chhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCcccccccCCCCCCCCC
Q 004286          330 KPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLE  408 (763)
Q Consensus       330 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~  408 (763)
                                               ...++++.|++.+++.+ .|..|+||||+|+..++                    
T Consensus       353 -------------------------~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~--------------------  387 (682)
T PHA02876        353 -------------------------RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN--------------------  387 (682)
T ss_pred             -------------------------CcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC--------------------
Confidence                                     11267888999998665 48899999999998754                    


Q ss_pred             CCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcCh-HHHHHHHHHhCCccccccc
Q 004286          409 GDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGI-TEIVEKILKSFPVAILDMN  487 (763)
Q Consensus       409 g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~-~eiv~~LL~~~~~~~~~~d  487 (763)
                        ..++++|+++|+                         +.+..+..|.||||+|+..++ .++++.|++ .+.+++.+|
T Consensus       388 --~~iv~~Ll~~ga-------------------------d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d  439 (682)
T PHA02876        388 --VVIINTLLDYGA-------------------------DIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKN  439 (682)
T ss_pred             --HHHHHHHHHCCC-------------------------CccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCC
Confidence              345566665555                         333467789999999998665 567898888 677889999


Q ss_pred             cCCCchhHHHHHcC-ChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          488 SEKKNVMLLAVENR-QRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       488 ~~G~T~LH~A~~~~-~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      .+|+||||+|+..+ +.+++++|++.|+    ++|.+|..|+||||+|+..+.
T Consensus       440 ~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga----d~n~~d~~g~tpl~~a~~~~~  488 (682)
T PHA02876        440 KDLSTPLHYACKKNCKLDVIEMLLDNGA----DVNAINIQNQYPLLIALEYHG  488 (682)
T ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHhCC
Confidence            99999999999977 6899999999998    799999999999999998653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.1e-42  Score=395.86  Aligned_cols=485  Identities=18%  Similarity=0.158  Sum_probs=327.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      .+|||.|+..|+.+.+..++..  ++.++..|..|.||||.|+..|+.+.+++|+.++      ++++.+|.+|.||+|+
T Consensus        88 ~~plh~a~~~~~a~~v~~ll~~--ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~------a~~~~k~~~g~t~l~~  159 (1143)
T KOG4177|consen   88 ITPLHVASKRGDAEMVKLLLCR--GAQIDARDRDGLTPLHCAARKGHVQVIELLLQHG------APINIKTKNGLSPLHM  159 (1143)
T ss_pred             ccHHHHHHhhcchhHHHHHHhc--cCchhhcccCCCcchhhhcccccHHHHHHHHHcc------CCCcccccCCCCchhh
Confidence            4567888888887777777777  7777777888888888888888888888888776      5566666666666655


Q ss_pred             HH-----------------------HcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 004286           91 AA-----------------------GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDG  147 (763)
Q Consensus        91 Aa-----------------------~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~  147 (763)
                      |+                       ..++.+++++|+...++ .+..+.+|.||||+||..+..+++++++.+|+++.  
T Consensus       160 a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~-~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~--  236 (1143)
T KOG4177|consen  160 AAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKAD-PNASALNGFTPLHIACKKNRIKVVELLLKHGADVS--  236 (1143)
T ss_pred             hcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCC-ccccccCCCCchhhhccccccceeeeeeeccCcCC--
Confidence            43                       23445555555555555 77778888888888888888888888888888887  


Q ss_pred             CccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCcc
Q 004286          148 YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKL  227 (763)
Q Consensus       148 ~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~  227 (763)
                         ..|..|.||||.|+..|+. +++.+|+. +++.++..+.+|.||||.|+..+       ..+++++|+++|+++...
T Consensus       237 ---a~d~~gl~~lh~a~~~g~~-~i~~~l~~-~ga~~~~~~vr~~tplh~AA~~~-------~~e~~~~ll~~ga~~~~~  304 (1143)
T KOG4177|consen  237 ---AKDESGLTPLHVAAFMGHL-DIVKLLLQ-HGASVNVSTVRGETPLHMAARAG-------QVEVCKLLLQNGADVLAK  304 (1143)
T ss_pred             ---cccccCccHHHHHHhccch-hHHHHHHh-cccccCcccccccCcchhhhccc-------hhhhHhhhhccCcccccc
Confidence               7888888888888888888 88888887 48888888888888888888877       358888888888888776


Q ss_pred             ccccccc-------c------------chhhhccccCCCCccHHHHHHHHHHHHHHHH------------------HHHh
Q 004286          228 QEETSYD-------Q------------HLFTTIKKQTNYPENYETCLNFIRLLKTMVI------------------VLFN  270 (763)
Q Consensus       228 ~~~~~~~-------~------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~------------------~l~~  270 (763)
                      ......-       +            .........+.+|+|++.+.........+..                  ....
T Consensus       305 ~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~  384 (1143)
T KOG4177|consen  305 ARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKS  384 (1143)
T ss_pred             cccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhccc
Confidence            6442100       0            0112223456789999888766552222211                  1112


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCC----CcccccccccCCccCCCC----CCCchhhHHhhccchhhhhhccchhH
Q 004286          271 RGNTKKEPTPRDAEDPERSKGNDGTGDQ----GEESRHNIGAQGHQFFPP----NYGTCFEFVKLVSKPMLVILGLGSTK  342 (763)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~g~~~  342 (763)
                      +..++.+.+...+.+++....++.+...    ....+....+.+.++.++    ++.+.++++.....            
T Consensus       385 g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~------------  452 (1143)
T KOG4177|consen  385 GRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGR------------  452 (1143)
T ss_pred             CchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhccc------------
Confidence            2223333445566666666666666222    222222333444555555    44555555543321            


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHhccCCcee-ccCCCCCCCCCCCCcccccCcccccc-cCCCCC------------CCCC
Q 004286          343 IRKIRDEKQKHTWSVQILDELLRRTSLYEY-DYVGGKPLRRPSSQVEEDETIPYAIV-DGGDTD------------ADLE  408 (763)
Q Consensus       343 l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~-d~~G~tpL~~a~~~~~~~~~~~~~~~-~g~~~~------------~~~~  408 (763)
                                   -.++...+++.+.+.+. -..|.||||.|+..++.+..  ..+. .+...+            ++..
T Consensus       453 -------------~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~--~llle~~~~~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  453 -------------YLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVV--QLLLEGGANDNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             -------------HhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHH--HHhhhcCCccCccchhccchhhhhhhh
Confidence                         12556666777775554 66788888888888765521  1111 111110            1111


Q ss_pred             CCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCcccccccc
Q 004286          409 GDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNS  488 (763)
Q Consensus       409 g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~  488 (763)
                      +...+.+.+++                         .+.+.+.++.+|.||||.||.+|+..+|++||+ .+++++.+|+
T Consensus       518 ~~v~~~~~l~~-------------------------~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~  571 (1143)
T KOG4177|consen  518 DTVKVAKILLE-------------------------HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDK  571 (1143)
T ss_pred             hhHHHHHHHhh-------------------------cCCceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCC
Confidence            22222222222                         344666788899999999999999999999999 6888899999


Q ss_pred             CCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCc
Q 004286          489 EKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPF  568 (763)
Q Consensus       489 ~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  568 (763)
                      .|+||||.||..|+.+|+.+|+++|+    ++|..|.+|.||||+|+..|+....+.             .+.+-.....
T Consensus       572 ~G~TPLH~Aa~~G~~~i~~LLlk~GA----~vna~d~~g~TpL~iA~~lg~~~~~k~-------------l~~~~~~~~~  634 (1143)
T KOG4177|consen  572 LGYTPLHQAAQQGHNDIAELLLKHGA----SVNAADLDGFTPLHIAVRLGYLSVVKL-------------LKVVTATPAA  634 (1143)
T ss_pred             CCCChhhHHHHcChHHHHHHHHHcCC----CCCcccccCcchhHHHHHhcccchhhH-------------HHhccCcccc
Confidence            99999999999999999999999999    799999999999999999999665432             0011101011


Q ss_pred             cccccccCCCCChhhhhhhh
Q 004286          569 HFFVRYNDQNKSAKDVFTET  588 (763)
Q Consensus       569 ~~~~~~n~~g~tp~d~~~~~  588 (763)
                      ......|..|.||.++.++.
T Consensus       635 ~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  635 TDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             ccchhhhhcccChhhHHHHh
Confidence            11337789999999987654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-41  Score=381.35  Aligned_cols=401  Identities=11%  Similarity=0.038  Sum_probs=281.2

Q ss_pred             hhHHHHHHHHc---CCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHH----HHHHHHHHhhhhccccccccCCC
Q 004286           10 LKKGLFKSAMK---GKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEE----IVEDLVRIIHEKQQLKVLKIGDE   82 (763)
Q Consensus        10 ~~~~L~~aa~~---g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~~~d~   82 (763)
                      .++|||.||..   |+.+.|+.||..  |++++..+..|+||||+|+..|+.+    +++.|++.+.      ..+..+ 
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~------~~n~~~-  102 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG------YSNIND-  102 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC------CCCCCC-
Confidence            47899997555   888988888887  8999999999999999999999954    5677877642      133333 


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCccccC---C---
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA--RHGHKDAFLCLHYLCASVDDGYNYSRR---K---  154 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~ga~~~~~~~~~~d---~---  154 (763)
                       ..+++|+|+..|+.++|++|+++|++ +|.+|.+|+||||.|+  ..|+.+++++|+++|++++     .+|   .   
T Consensus       103 -~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-----~~d~~~~~g~  175 (661)
T PHA02917        103 -FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-----YEDEDDEYGY  175 (661)
T ss_pred             -cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-----cccccccccc
Confidence             23788889999999999999999999 9999999999999654  5789999999999999997     333   2   


Q ss_pred             --------CCChHHHHHHH-----------cCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHH
Q 004286          155 --------NGETILHYAIS-----------GYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCT  215 (763)
Q Consensus       155 --------~G~TpLh~A~~-----------~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~  215 (763)
                              .+.||||+|+.           +++. +++++|++ .|+++|.+|.+|.||||+|+.+|+.     ..++++
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~-eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~-----~~eivk  248 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP-EVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHI-----DIDIVK  248 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcH-HHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCC-----cHHHHH
Confidence                    33699999986           4688 99999999 5999999999999999999999853     358999


Q ss_pred             HHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHH-----HHHHHHHHHHHhCCCCCCCCCCCCCCCCccCC
Q 004286          216 GIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFI-----RLLKTMVIVLFNRGNTKKEPTPRDAEDPERSK  290 (763)
Q Consensus       216 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  290 (763)
                      +|++ |++++.....          .+....+|++++...+..     ..-.++++.|++.|.+.........       
T Consensus       249 ~Li~-g~d~~~~~~~----------~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~-------  310 (661)
T PHA02917        249 LLMK-GIDNTAYSYI----------DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVP-------  310 (661)
T ss_pred             HHHh-CCcccccccc----------cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeec-------
Confidence            9985 8887653211          112334667777643211     1245677788888754211000000       


Q ss_pred             CCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHh-hhccHHHHHHHHHhccCC
Q 004286          291 GNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQ-KHTWSVQILDELLRRTSL  369 (763)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~~~~~iv~~Ll~~~~~  369 (763)
                                            ...++.+    .+.+..      ...|...+.+...... ......++++.|++.|++
T Consensus       311 ----------------------~~~~~~~----~~~~~~------~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAd  358 (661)
T PHA02917        311 ----------------------LWRNDKE----TISLIL------KTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAV  358 (661)
T ss_pred             ----------------------ccccchH----HHHHHH------HHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCC
Confidence                                  0000000    000000      0011111222222111 112245799999999997


Q ss_pred             cee-ccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCcccc-CccccccccccccCCCCCccccCCCCCC
Q 004286          370 YEY-DYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTD-HNVVTDTHKLSRNNGKNSEDRNEGGKTG  447 (763)
Q Consensus       370 ~~~-d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (763)
                      .+. +..|.++..    ...                      ..++++|+. .|+                         
T Consensus       359 vn~~~~~g~~~~~----~~~----------------------~~~i~~LL~~~ga-------------------------  387 (661)
T PHA02917        359 VNKEAIHGYFRNI----NID----------------------SYTMKYLLKKEGG-------------------------  387 (661)
T ss_pred             CCCCCccccchhh----cCC----------------------HHHHHHHHHhcCC-------------------------
Confidence            654 555665421    100                      111222221 121                         


Q ss_pred             CCCCCCCCCCcHHHHHHHcC-----------------------hHHHHHHHHHhCCccccccccCCCchhHHHHHcCChH
Q 004286          448 STIPDTVKRETPILIAAKNG-----------------------ITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRH  504 (763)
Q Consensus       448 ~~~~~d~~G~tpLh~Aa~~g-----------------------~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~  504 (763)
                      +.+..+.+|+||||.||+.+                       ..++|+.|+. .+++++.+|..|+||||+|+..++.+
T Consensus       388 ~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~  466 (661)
T PHA02917        388 DAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQS  466 (661)
T ss_pred             CccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHH
Confidence            22234557999999998543                       3567899999 67788999999999999999999999


Q ss_pred             HHHHHHhccchhhhhhccccCCCCchhhhHhh-cCC
Q 004286          505 VYQLLLKTAIIQETVFRKVDDQGNSALHLAAT-LGD  539 (763)
Q Consensus       505 iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~-~g~  539 (763)
                      ++++|++.|+    ++|.+|..|+||||+|+. .++
T Consensus       467 ~v~~Ll~~GA----din~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        467 LVSLLLESGS----DVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             HHHHHHHCcC----CCCCCCCCCCCHHHHHHHhCCC
Confidence            9999999998    799999999999999996 455

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-41  Score=370.88  Aligned_cols=423  Identities=11%  Similarity=0.033  Sum_probs=277.0

Q ss_pred             hhHHHHHHHHcCC---HHHHHHHHccCCCccccccCCCCChHHHHHHHcC--CHHHHHHHHHHhhhhccccccccCCCCC
Q 004286           10 LKKGLFKSAMKGK---WNEVVENYGKDDRIHEARITRSGGTALHIAVSDG--QEEIVEDLVRIIHEKQQLKVLKIGDERG   84 (763)
Q Consensus        10 ~~~~L~~aa~~g~---~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~d~~g   84 (763)
                      .+++||.|+..|+   .+.|+.||..  |++++.+|..|+||||+|+..|  +.|+|++|+++|++    ++++..|..+
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~--GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~----~~~~~~~~~~  114 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSR--GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN----ASNELTSNIN  114 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhC--CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC----CCcccccccC
Confidence            5799999999974   6766666665  9999999999999999999977  79999999999843    6678888889


Q ss_pred             chHHHHHHH--cCCHHHHHHHHhcCCCccCCCC-----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC--ccccCCC
Q 004286           85 STPLHIAAG--LGNVSMCKCIATADPRLIGERN-----HENETPFFLAARHGHKDAFLCLHYLCASVDDGY--NYSRRKN  155 (763)
Q Consensus        85 ~TpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~-----~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~--~~~~d~~  155 (763)
                      .+|||.++.  .++.+++++|++.+...++...     ..|.+|+++|...++.++|++|+++|++++.-.  .+..+..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            999999988  8899999999974443366553     279999999999999999999999999995210  1123334


Q ss_pred             C-ChHHHHHH------HcCChHHHHHHHHHhccccccccccCCCcHHHH--HhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          156 G-ETILHYAI------SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL--LATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       156 G-~TpLh~A~------~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~--A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      + .|.||+++      .+++. |++++|++ +|+++|.+|.+|.||||+  |+..+       +.+++++|++.-++...
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~-eiv~lLIs-~GadIN~kd~~G~TpLh~~~~~~~~-------~~eiv~~Li~~~~~~~~  265 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSK-DVIKCLID-NNVSIHGRDEGGSLPIQYYWSCSTI-------DIEIVKLLIKDVDTCSV  265 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCH-HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCcc-------cHHHHHHHHhccccccc
Confidence            4 45666444      45677 99999999 599999999999999996  33344       47999999983322221


Q ss_pred             cccccccccchhhhcc--ccCC-CCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 004286          227 LQEETSYDQHLFTTIK--KQTN-YPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESR  303 (763)
Q Consensus       227 ~~~~~~~~~~~~~~~~--~~~~-~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (763)
                      -+..+.+...+.+..-  ++-+ .|..         .-..+++.++..+....-.+.+  -.+  ....           
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~~--~~~--~~~~-----------  321 (672)
T PHA02730        266 YDDISQPYIRGVLADYLNKRFRVTPYN---------VDMEIVNLLIEGRHTLIDVMRS--ITS--YDSR-----------  321 (672)
T ss_pred             cccccchhhhhhHHHhhhhhhhcccCC---------cchHHHHHHhhccCcchhhhhc--ccc--cccc-----------
Confidence            1111000000000000  0000 0000         0012223333322210000000  000  0000           


Q ss_pred             cccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhc--cHHHHHHHHHhccCCceeccCCCCCCC
Q 004286          304 HNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHT--WSVQILDELLRRTSLYEYDYVGGKPLR  381 (763)
Q Consensus       304 ~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~--~~~~iv~~Ll~~~~~~~~d~~G~tpL~  381 (763)
                              +..   ....-...+.+       -....+.++.+...--...  -..++++.|+++|++.+.+..|.||||
T Consensus       322 --------~~n---~~~~~~i~~~~-------~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k~~G~TpLH  383 (672)
T PHA02730        322 --------EYN---HYIIDNILKRF-------RQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKTTDNNYPLH  383 (672)
T ss_pred             --------ccc---hhHHHHHHHhh-------hccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcCCCCCcHHH
Confidence                    000   00000000000       0001122333333222222  456999999999998888889999999


Q ss_pred             CCCCCcc--cccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcH
Q 004286          382 RPSSQVE--EDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETP  459 (763)
Q Consensus       382 ~a~~~~~--~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tp  459 (763)
                      +|+..+.  .+.                    +++++|+.+|+                       ..+.+.+|..|.||
T Consensus       384 ~Aa~~nnn~i~~--------------------eIvelLIs~Ga-----------------------~~dIN~kd~~G~T~  420 (672)
T PHA02730        384 DYFVNNNNIVDV--------------------NVVRFIVENNG-----------------------HMAINHVSNNGRLC  420 (672)
T ss_pred             HHHHHcCCcchH--------------------HHHHHHHHcCC-----------------------CccccccccCCCch
Confidence            9887643  121                    33444444432                       01234567789999


Q ss_pred             HHH---HHHcC---------hHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccC-C
Q 004286          460 ILI---AAKNG---------ITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDD-Q  526 (763)
Q Consensus       460 Lh~---Aa~~g---------~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~-~  526 (763)
                      ||.   |...+         ..+++++|+. .+++++.+|..|+||||+|+..++.+++++|++.|+    ++|.+|. .
T Consensus       421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GA----dIN~~d~~~  495 (672)
T PHA02730        421 MYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGA----SVNTTSRSI  495 (672)
T ss_pred             HhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCcC
Confidence            994   33332         2367999998 677889999999999999999999999999999998    7999997 5


Q ss_pred             CCchhhhHhhc
Q 004286          527 GNSALHLAATL  537 (763)
Q Consensus       527 G~TpLH~Aa~~  537 (763)
                      |+||||+|+..
T Consensus       496 g~TaL~~Aa~~  506 (672)
T PHA02730        496 INTAIQKSSYR  506 (672)
T ss_pred             CcCHHHHHHHh
Confidence            99999999975

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-40  Score=365.34  Aligned_cols=297  Identities=15%  Similarity=0.139  Sum_probs=233.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      ..|..|+..|+.+.++.++... +..++..+..|.||||.|+..|+.++|++|++.|      ++++..+..|.||||+|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~-~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G------a~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNK-GNCINISVDETTTPLIDAIRSGDAKIVELFIKHG------ADINHINTKIPHPLLTA   75 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHH
Confidence            4688999999999999999865 5667778889999999999999999999999998      67888999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHH
Q 004286           92 AGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVD  171 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~  171 (763)
                      +..|+.+++++|+++|++ +..          .+....+.++++.|++.|++++     .+|..|.||||+|+..|+. +
T Consensus        76 ~~~~~~~iv~~Ll~~g~~-~~~----------~~~~~~~~~~i~~ll~~g~d~n-----~~~~~g~T~Lh~A~~~~~~-~  138 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVD-TSI----------LPIPCIEKDMIKTILDCGIDVN-----IKDAELKTFLHYAIKKGDL-E  138 (434)
T ss_pred             HHcCCHHHHHHHHHCCCC-CCc----------chhccCCHHHHHHHHHCcCCCC-----CCCCCCccHHHHHHHCCCH-H
Confidence            999999999999999876 321          1233456677888888887777     6777788888888888887 8


Q ss_pred             HHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccH
Q 004286          172 LAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENY  251 (763)
Q Consensus       172 iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (763)
                      ++++|++ .|++++.+|.+|.||||+|+..++       .+++++|+++|++++..+..              +.+|+++
T Consensus       139 ~v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~-------~~iv~~Ll~~g~~~n~~~~~--------------g~tpL~~  196 (434)
T PHA02874        139 SIKMLFE-YGADVNIEDDNGCYPIHIAIKHNF-------FDIIKLLLEKGAYANVKDNN--------------GESPLHN  196 (434)
T ss_pred             HHHHHHh-CCCCCCCcCCCCCCHHHHHHHCCc-------HHHHHHHHHCCCCCCCCCCC--------------CCCHHHH
Confidence            8888877 477777778888888888887764       57888888888777765522              4455555


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccch
Q 004286          252 ETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKP  331 (763)
Q Consensus       252 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~  331 (763)
                      +...+                                                                           
T Consensus       197 A~~~g---------------------------------------------------------------------------  201 (434)
T PHA02874        197 AAEYG---------------------------------------------------------------------------  201 (434)
T ss_pred             HHHcC---------------------------------------------------------------------------
Confidence            52211                                                                           


Q ss_pred             hhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCC
Q 004286          332 MLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQ  411 (763)
Q Consensus       332 ~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~  411 (763)
                                              ..++++.|++.+++..                                        
T Consensus       202 ------------------------~~~iv~~Ll~~g~~i~----------------------------------------  217 (434)
T PHA02874        202 ------------------------DYACIKLLIDHGNHIM----------------------------------------  217 (434)
T ss_pred             ------------------------CHHHHHHHHhCCCCCc----------------------------------------
Confidence                                    1256666766643211                                        


Q ss_pred             CCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCC
Q 004286          412 QPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKK  491 (763)
Q Consensus       412 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~  491 (763)
                                                             .++..|.||||.|+..+. +.+++|+.  +..++.+|.+|+
T Consensus       218 ---------------------------------------~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~  255 (434)
T PHA02874        218 ---------------------------------------NKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGS  255 (434)
T ss_pred             ---------------------------------------CCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCC
Confidence                                                   135579999999999875 56777774  566788899999


Q ss_pred             chhHHHHHcC-ChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          492 NVMLLAVENR-QRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       492 T~LH~A~~~~-~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      ||||+|+..+ +.+++++|++.++    +++.+|..|+||||+|++.++
T Consensus       256 TpLh~A~~~~~~~~iv~~Ll~~ga----d~n~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        256 TPLHHAINPPCDIDIIDILLYHKA----DISIKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             CHHHHHHhcCCcHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHhCC
Confidence            9999999876 7899999999988    689999999999999998874

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-40  Score=375.49  Aligned_cols=423  Identities=12%  Similarity=0.030  Sum_probs=292.1

Q ss_pred             HHHHHHHHccCCCccccccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCH--
Q 004286           23 WNEVVENYGKDDRIHEARITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNV--   97 (763)
Q Consensus        23 ~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~--   97 (763)
                      .+.+++++.+  +..++.+|.+|+||||+||..   |+.++|++|+++|      ++++.+|..|+||||+|+..|+.  
T Consensus        12 ~~~~~~l~~~--~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g------a~v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917         12 LDELKQMLRD--RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG------TNPLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             HHHHHHHHhc--cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC------CCccccCCCCCCHHHHHHHcCChhH
Confidence            4567888875  777788899999999998665   8899999999998      67889999999999999999985  


Q ss_pred             --HHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH--HcCChHHHH
Q 004286           98 --SMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI--SGYYFVDLA  173 (763)
Q Consensus        98 --~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~--~~g~~~~iv  173 (763)
                        ++++.|++.+.. .+..+  ..+++|+|+..|+.++|++|+++|++++     .+|.+|+||||.|+  ..|+. +++
T Consensus        84 ~~~~~~~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-----~~d~~g~T~L~~~~a~~~~~~-eiv  154 (661)
T PHA02917         84 NKDIAMALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-----VKCENHRSVIENYVMTDDPVP-EII  154 (661)
T ss_pred             HHHHHHHHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-----ccCCCCccHHHHHHHccCCCH-HHH
Confidence              456788887654 44433  2377888999999999999999999999     89999999999654  57899 999


Q ss_pred             HHHHHhcccccccccc---CC-----------CcHHHHHhcCCCCcc----CCchHHHHHHHHHcCCCCCcccccccccc
Q 004286          174 FQIIHLYEKLVNFVNE---RG-----------VSPLHLLATKPNAFR----SGSHLGLCTGIIYHCISVDKLQEETSYDQ  235 (763)
Q Consensus       174 ~~LL~~~~~~~~~~d~---~G-----------~TpLh~A~~~~~~~~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  235 (763)
                      ++|++ .|++++.+|.   .|           .||||+|+..+....    ...+.+++++|+++|+++|..+.      
T Consensus       155 klLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~------  227 (661)
T PHA02917        155 DLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK------  227 (661)
T ss_pred             HHHHH-cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC------
Confidence            99999 5999987654   34           599999986321000    11268999999999999998874      


Q ss_pred             chhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCC
Q 004286          236 HLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFP  315 (763)
Q Consensus       236 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p  315 (763)
                              .+.+|++++...+..+  .++++.|.+ |+++...  ..-.++                             
T Consensus       228 --------~G~TpLh~A~~~g~~~--~eivk~Li~-g~d~~~~--~~~~~~-----------------------------  265 (661)
T PHA02917        228 --------NYCTALQYYIKSSHID--IDIVKLLMK-GIDNTAY--SYIDDL-----------------------------  265 (661)
T ss_pred             --------CCCcHHHHHHHcCCCc--HHHHHHHHh-CCccccc--ccccCc-----------------------------
Confidence                    4789999997766432  234444443 3332221  000000                             


Q ss_pred             CCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCccc
Q 004286          316 PNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPY  395 (763)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~  395 (763)
                       ...++..++..               +.+..  ........++++.|++.|++     .+.+++|++...+..+  +..
T Consensus       266 -~~~~~~~~a~y---------------l~~~~--~~~~~v~~~iv~~Li~~Ga~-----~~~~~~~~~~~~~~~~--~~~  320 (661)
T PHA02917        266 -TCCTRGIMADY---------------LNSDY--RYNKDVDLDLVKLFLENGKP-----HGIMCSIVPLWRNDKE--TIS  320 (661)
T ss_pred             -ccccchHHHHH---------------HHhhc--cccccchHHHHHHHHhCCCC-----CceeEeeecccccchH--HHH
Confidence             00011111110               00000  00012245899999999975     3557777777765432  111


Q ss_pred             ccc--cCCCCC------CCCCCC--CCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHH
Q 004286          396 AIV--DGGDTD------ADLEGD--QQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAK  465 (763)
Q Consensus       396 ~~~--~g~~~~------~~~~g~--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~  465 (763)
                      .++  .|.++.      ....|.  ..++++|+++|+                         +++.++..|.|+.    .
T Consensus       321 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GA-------------------------dvn~~~~~g~~~~----~  371 (661)
T PHA02917        321 LILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGA-------------------------VVNKEAIHGYFRN----I  371 (661)
T ss_pred             HHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCC-------------------------CCCCCCccccchh----h
Confidence            111  222221      111232  235666666666                         3445677788854    4


Q ss_pred             cChHHHHHHHHHhCCccccccccCCCchhHHHHHcCC-----------------------hHHHHHHHhccchhhhhhcc
Q 004286          466 NGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQ-----------------------RHVYQLLLKTAIIQETVFRK  522 (763)
Q Consensus       466 ~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~-----------------------~~iv~~Ll~~~~~~~~~~n~  522 (763)
                      ..+.+++++||.+.+.+++..+.+|+||||.|+++++                       .+++++|+++++    ++|.
T Consensus       372 ~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GA----dIN~  447 (661)
T PHA02917        372 NIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLK----DINM  447 (661)
T ss_pred             cCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCC----CCCC
Confidence            6678899999986566555556789999999986543                       567899999998    7999


Q ss_pred             ccCCCCchhhhHhhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCccccccccCCCCChhhhhhh
Q 004286          523 VDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTE  587 (763)
Q Consensus       523 ~D~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tp~d~~~~  587 (763)
                      +|..|+||||+|+..++.+.+.             +  .++...   ..+.+|..|.||+.++..
T Consensus       448 kd~~G~TpLh~Aa~~~~~~~v~-------------~--Ll~~GA---din~~d~~G~T~L~~A~~  494 (661)
T PHA02917        448 IDKRGETLLHKAVRYNKQSLVS-------------L--LLESGS---DVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCcCHHHHHHHcCCHHHHH-------------H--HHHCcC---CCCCCCCCCCCHHHHHHH
Confidence            9999999999999988633211             1  222222   345889999999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.5e-40  Score=373.13  Aligned_cols=205  Identities=16%  Similarity=0.086  Sum_probs=173.8

Q ss_pred             HcCCHHHHHHHHccCCC-cccccc-CCCCChHHHHHHH--cCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHc
Q 004286           19 MKGKWNEVVENYGKDDR-IHEARI-TRSGGTALHIAVS--DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGL   94 (763)
Q Consensus        19 ~~g~~~~v~~lL~~~~~-~~~~~~-d~~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~   94 (763)
                      ..++.+.++.|++.  | ++++.. |..|+||||+|+.  .++.+++++|+++|      ++++.+|..|+||||+|+..
T Consensus       151 ~~v~leiVk~LLe~--G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G------ADVN~kD~~G~TPLH~Aa~~  222 (764)
T PHA02716        151 RGIDLDLIKYMVDV--GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG------VNVNLQNNHLITPLHTYLIT  222 (764)
T ss_pred             cCCCHHHHHHHHHC--CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHc
Confidence            35777777777776  6 899988 8999999999875  46789999999998      77999999999999999999


Q ss_pred             CC--HHHHHHHHhcCCCccCCCCCCCChHHHHH-------------------------------------HHcCCHHHHH
Q 004286           95 GN--VSMCKCIATADPRLIGERNHENETPFFLA-------------------------------------ARHGHKDAFL  135 (763)
Q Consensus        95 g~--~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A-------------------------------------~~~g~~~~v~  135 (763)
                      |+  .++|++|+++|++ ++.+|..|+||||+|                                     ++.|+.++++
T Consensus       223 g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVk  301 (764)
T PHA02716        223 GNVCASVIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVY  301 (764)
T ss_pred             CCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHH
Confidence            95  5899999999999 999999999999975                                     4567889999


Q ss_pred             HHHHcCCCCCCCCccccCCCCChHHHHHHH--cCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC-------cc
Q 004286          136 CLHYLCASVDDGYNYSRRKNGETILHYAIS--GYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA-------FR  206 (763)
Q Consensus       136 ~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~--~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~-------~~  206 (763)
                      +|+++|++++     .+|.+|+||||+|+.  .++. +++++|++ .|++++.+|..|+||||+|+.....       ..
T Consensus       302 lLLe~GAdIN-----~kD~~G~TPLH~Aaa~~~~~~-eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~  374 (764)
T PHA02716        302 SFLQPGVKLH-----YKDSAGRTCLHQYILRHNIST-DIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETD  374 (764)
T ss_pred             HHHhCCCcee-----ccCCCCCCHHHHHHHHhCCCc-hHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhcccccccc
Confidence            9999999998     899999999999875  4678 99999998 5999999999999999998753110       00


Q ss_pred             CCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHH
Q 004286          207 SGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYET  253 (763)
Q Consensus       207 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  253 (763)
                      ...+.+++++|+++|++++..+..              +.+|++...
T Consensus       375 ~~~~~eVVklLL~~GADIn~kn~~--------------G~TPLh~y~  407 (764)
T PHA02716        375 NDIRLDVIQCLISLGADITAVNCL--------------GYTPLTSYI  407 (764)
T ss_pred             ccChHHHHHHHHHCCCCCCCcCCC--------------CCChHHHHH
Confidence            123689999999999999988843              778998543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=370.08  Aligned_cols=193  Identities=18%  Similarity=0.107  Sum_probs=173.8

Q ss_pred             HHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcC---CHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           15 FKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG---QEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        15 ~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      +.++..++.+.++.++..  |++++..+..|.||||+|+..|   +.+++++|+++|      +++|.+|..|+||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~--ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G------adin~~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA--GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG------ADVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc--CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC------CCCCCCCCCCCCHHHHH
Confidence            556788999999999988  8999999999999999999999   999999999998      77999999999999999


Q ss_pred             HHcC-CHHHHHHHHhcCCCccCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC-
Q 004286           92 AGLG-NVSMCKCIATADPRLIGERNHENETPFFLAA--RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY-  167 (763)
Q Consensus        92 a~~g-~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g-  167 (763)
                      +..| +.+++++|+++|++ ++.+|..|.||||+|+  ..++.+++++|+++|++++     .+|..|.||||+|+..+ 
T Consensus        91 ~~~~~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-----~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-----ALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCC
Confidence            9999 59999999999999 9999999999999999  5678999999999999998     89999999999999876 


Q ss_pred             -ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          168 -YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       168 -~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                       +. +++++|++ .|++++..|..|.||||+|+.....     ..++++.|+++|++++..+
T Consensus       165 ~~~-~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~~-----~~~i~~~Ll~~g~~~~~~d  219 (471)
T PHA03095        165 ANV-ELLRLLID-AGADVYAVDDRFRSLLHHHLQSFKP-----RARIVRELIRAGCDPAATD  219 (471)
T ss_pred             CCH-HHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCCC-----cHHHHHHHHHcCCCCcccC
Confidence             57 99999999 5999999999999999999975321     4688888888888887655

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.5e-41  Score=383.57  Aligned_cols=489  Identities=18%  Similarity=0.142  Sum_probs=311.8

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      ...+|+|.|+..|+.+....++..  ++.++..+.+|.||||.|+..|+.++++.|+..|      +.++.+|.+|.|||
T Consensus        53 ~~~~pl~~aa~~~~~~v~~~ll~~--~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~g------a~~~~~~~~~lTpL  124 (1143)
T KOG4177|consen   53 SGFTPLHIAAHYGNENVAELLLNR--GAIVNATARNGITPLHVASKRGDAEMVKLLLCRG------AQIDARDRDGLTPL  124 (1143)
T ss_pred             cccCHHHHHhhhhhhhhhhhhhcc--ccccCcccccCccHHHHHHhhcchhHHHHHHhcc------CchhhcccCCCcch
Confidence            456788888888887777777766  7788888888888888888888888888888887      66788888888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH-----------------------HcCCHHHHHHHHHcCCCCC
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA-----------------------RHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~-----------------------~~g~~~~v~~Ll~~ga~~~  145 (763)
                      |.|+..|+.+++++|+..+++ ++.+|+.|.||+|+|+                       ..++.+++++|+...++.+
T Consensus       125 h~aa~~g~~~~~~~ll~~~a~-~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~  203 (1143)
T KOG4177|consen  125 HCAARKGHVQVIELLLQHGAP-INIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPN  203 (1143)
T ss_pred             hhhcccccHHHHHHHHHccCC-CcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCcc
Confidence            888888888888888888866 8888888888876654                       3455666677777777776


Q ss_pred             CCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          146 DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       146 ~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                           ..+.+|.||||.||..+.. +++++++. +|++++..|+.|.||||.|+..|       +++++++|+++|+.++
T Consensus       204 -----a~~~~~~tpl~~a~~~nri-~~~eLll~-~gadv~a~d~~gl~~lh~a~~~g-------~~~i~~~l~~~ga~~~  269 (1143)
T KOG4177|consen  204 -----ASALNGFTPLHIACKKNRI-KVVELLLK-HGADVSAKDESGLTPLHVAAFMG-------HLDIVKLLLQHGASVN  269 (1143)
T ss_pred             -----ccccCCCCchhhhcccccc-ceeeeeee-ccCcCCcccccCccHHHHHHhcc-------chhHHHHHHhcccccC
Confidence                 8999999999999999999 99999999 59999999999999999999998       5899999999999999


Q ss_pred             ccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHH--------H--------HHHhC--CCCCCCCCCCCCCCCc
Q 004286          226 KLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMV--------I--------VLFNR--GNTKKEPTPRDAEDPE  287 (763)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll--------~--------~l~~~--~~~~~~~~~~~~~~~~  287 (763)
                      ..+..              +.+|+|.+...+..+....++        .        .+...  ...+......++..++
T Consensus       270 ~~~vr--------------~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~  335 (1143)
T KOG4177|consen  270 VSTVR--------------GETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPN  335 (1143)
T ss_pred             ccccc--------------ccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCcc
Confidence            87743              456666555444433222111        0        00000  0000111123333444


Q ss_pred             cCCCCCCCCCCCcccccc---cc-cCC----ccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHH
Q 004286          288 RSKGNDGTGDQGEESRHN---IG-AQG----HQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQI  359 (763)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~---~~-l~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~i  359 (763)
                      ...+.+.+..+.......   .. +..    .........++++++......                          ++
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~--------------------------~~  389 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRV--------------------------SV  389 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCch--------------------------hH
Confidence            444444442221111111   11 111    111111333444444432221                          45


Q ss_pred             HHHHHhccCCcee-ccCCCCCCCCCCCCcccccCcccccc-cCCCCCCCC-C-----------C-CCCCCCccccCcccc
Q 004286          360 LDELLRRTSLYEY-DYVGGKPLRRPSSQVEEDETIPYAIV-DGGDTDADL-E-----------G-DQQPDTSLTDHNVVT  424 (763)
Q Consensus       360 v~~Ll~~~~~~~~-d~~G~tpL~~a~~~~~~~~~~~~~~~-~g~~~~~~~-~-----------g-~~~~~~~L~~~~~~~  424 (763)
                      ++++++++++.+. ..+|.||||.|+..++.+  ....+. +|++..... .           | ..+....+++.+.. 
T Consensus       390 v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~--~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~-  466 (1143)
T KOG4177|consen  390 VELLLEAGADPNSAGKNGVTPLHVAAHYGNPR--VVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGAD-  466 (1143)
T ss_pred             HHhhhhccCCcccCCCCCcceeeehhhccCcc--eEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCC-
Confidence            5555555554332 445555555555554433  222222 343332111 1           1 11111122222210 


Q ss_pred             ccccccccCC-----------CCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCch
Q 004286          425 DTHKLSRNNG-----------KNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNV  493 (763)
Q Consensus       425 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~  493 (763)
                        .......+           .........+.....+...+.|.|+||+|+..+...+++.+++ .+..++.++.+|.||
T Consensus       467 --~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~-~ga~v~~~~~r~~Tp  543 (1143)
T KOG4177|consen  467 --PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE-HGANVDLRTGRGYTP  543 (1143)
T ss_pred             --cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh-cCCceehhcccccch
Confidence              00000000           0000000001112233344567777777777777777777777 566778899999999


Q ss_pred             hHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCcccccc
Q 004286          494 MLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVR  573 (763)
Q Consensus       494 LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  573 (763)
                      ||+||.+|+.++|++|+++++    +++.+|+.|+||||.||..|+..++.+               +++....+   +.
T Consensus       544 Lh~A~~~g~v~~VkfLLe~gA----dv~ak~~~G~TPLH~Aa~~G~~~i~~L---------------Llk~GA~v---na  601 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEHGA----DVNAKDKLGYTPLHQAAQQGHNDIAEL---------------LLKHGASV---NA  601 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhCCc----cccccCCCCCChhhHHHHcChHHHHHH---------------HHHcCCCC---Cc
Confidence            999999999999999999999    799999999999999999997443211               44444444   48


Q ss_pred             ccCCCCChhhhhhhh
Q 004286          574 YNDQNKSAKDVFTET  588 (763)
Q Consensus       574 ~n~~g~tp~d~~~~~  588 (763)
                      .+.+|.||+.++...
T Consensus       602 ~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRL  616 (1143)
T ss_pred             ccccCcchhHHHHHh
Confidence            899999999998765

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-40  Score=350.39  Aligned_cols=308  Identities=19%  Similarity=0.221  Sum_probs=268.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++||.|+....++.+..++..  |++....+.++.+|+|+|+..|+.++++.|+++|      +++|..|+.|.||||
T Consensus        88 ~n~~l~~a~~~~~~~~i~~Lls~--gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~------~dvnl~de~~~TpLh  159 (929)
T KOG0510|consen   88 DNTPLHAAVEYNQGDKIQVLLSY--GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYG------ADVNLEDENGFTPLH  159 (929)
T ss_pred             cCchhHHHhhcchHHHHHHHHhc--CCCCChhhhhccCchhhccccchHHHHHHHHHhc------CCccccccCCCchhh
Confidence            46799999999999999999998  8999999999999999999999999999999998      789999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCccccCCCCChHHHHHH
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHY-----LCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-----~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      +||..++.|..+.|++.|++ +...|.+|.+|+|.|++.|..++.+..+.     ++..+|     ..+..|.||||.|+
T Consensus       160 ~A~~~~~~E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-----~~~n~~~~pLhlAv  233 (929)
T KOG0510|consen  160 LAARKNKVEAKKELINKGAD-PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-----FDNNEKATPLHLAV  233 (929)
T ss_pred             HHHhcChHHHHHHHHhcCCC-CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-----cccCCCCcchhhhh
Confidence            99999999988999999999 89999999999999999999999999998     555555     89999999999999


Q ss_pred             HcCChHHHHHHHHHhccc--------------cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          165 SGYYFVDLAFQIIHLYEK--------------LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       165 ~~g~~~~iv~~LL~~~~~--------------~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                      ..|+. ++++.+|+....              .+|..|++|.||||+||+.|.       .+.++.|+..|++++.++. 
T Consensus       234 e~g~~-e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~-------~~svd~Ll~~Ga~I~~kn~-  304 (929)
T KOG0510|consen  234 EGGDI-EMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG-------PESVDNLLGFGASINSKNK-  304 (929)
T ss_pred             hcCCH-HHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC-------hhHHHHHHHcCCcccccCC-
Confidence            99999 999999985322              366779999999999999995       6999999999999998773 


Q ss_pred             cccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCC
Q 004286          231 TSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQG  310 (763)
Q Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (763)
                                   +..+|+|.+...+.+                                                    
T Consensus       305 -------------d~~spLH~AA~yg~~----------------------------------------------------  319 (929)
T KOG0510|consen  305 -------------DEESPLHFAAIYGRI----------------------------------------------------  319 (929)
T ss_pred             -------------CCCCchHHHHHcccH----------------------------------------------------
Confidence                         356777777554332                                                    


Q ss_pred             ccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccc
Q 004286          311 HQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEED  390 (763)
Q Consensus       311 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~  390 (763)
                                                                     ..++.||+. .+.                    
T Consensus       320 -----------------------------------------------ntv~rLL~~-~~~--------------------  331 (929)
T KOG0510|consen  320 -----------------------------------------------NTVERLLQE-SDT--------------------  331 (929)
T ss_pred             -----------------------------------------------HHHHHHHhC-cCc--------------------
Confidence                                                           345555552 000                    


Q ss_pred             cCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHH
Q 004286          391 ETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITE  470 (763)
Q Consensus       391 ~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~e  470 (763)
                                                                              ...+..|-.|+||||+|+++||.+
T Consensus       332 --------------------------------------------------------rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  332 --------------------------------------------------------RLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             --------------------------------------------------------cccccccccCCCchhhhhhcCHHH
Confidence                                                                    011224667999999999999999


Q ss_pred             HHHHHHHhCCcccc--ccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhh
Q 004286          471 IVEKILKSFPVAIL--DMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHL  533 (763)
Q Consensus       471 iv~~LL~~~~~~~~--~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~  533 (763)
                      +++.||+++....+  ..|++|.||||.|+++|+..+|++|+.+|+    .+..+|+.|.|++++
T Consensus       356 v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga----~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  356 VVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA----DIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC----ceeeccccccccccc
Confidence            99999997665554  459999999999999999999999999999    688999999999996

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.6e-39  Score=354.04  Aligned_cols=431  Identities=13%  Similarity=0.055  Sum_probs=273.6

Q ss_pred             HHHHHccCCCcccc-ccCCCCChHHHHHHHcC---CHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcC--CHHH
Q 004286           26 VVENYGKDDRIHEA-RITRSGGTALHIAVSDG---QEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG--NVSM   99 (763)
Q Consensus        26 v~~lL~~~~~~~~~-~~d~~g~TpLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~~   99 (763)
                      ++..++.  -++++ .+|..|+||||+|+..|   +.++|++||++|      ++++.+|..|+||||+|+..|  +.++
T Consensus        23 ~~~~~~~--~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G------Adin~kD~~G~TPLh~Aa~~~~~~~eI   94 (672)
T PHA02730         23 IKLEIET--CHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG------VERLCRNNEGLTPLGVYSKRKYVKSQI   94 (672)
T ss_pred             HHHHHHH--hcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC------CCCcccCCCCCChHHHHHHcCCCcHHH
Confidence            3344444  23455 78899999999999997   599999999999      779999999999999999977  7999


Q ss_pred             HHHHHhcCCCc-cCCCCCCCChHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCccccC-CCCChHHHHHHHcCChHHHHH
Q 004286          100 CKCIATADPRL-IGERNHENETPFFLAAR--HGHKDAFLCLHY-LCASVDDGYNYSRR-KNGETILHYAISGYYFVDLAF  174 (763)
Q Consensus       100 v~~Ll~~~~~~-~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~-~ga~~~~~~~~~~d-~~G~TpLh~A~~~g~~~~iv~  174 (763)
                      |++|+++|+.. ++..+..+.+|||.++.  .++.+++++|++ .+++++. ..+.++ ..|.+|+++|...++. |+|+
T Consensus        95 v~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~-eIvk  172 (672)
T PHA02730         95 VHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-NTNYYIHCLGLVDIYVTTPNPRP-EVLL  172 (672)
T ss_pred             HHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-hhhhhccccchhhhhHhcCCCch-HHHH
Confidence            99999996541 57778889999999998  899999999996 6778872 111222 3899999999999999 9999


Q ss_pred             HHHHhcccccc-------ccccCCC-cHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCC
Q 004286          175 QIIHLYEKLVN-------FVNERGV-SPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTN  246 (763)
Q Consensus       175 ~LL~~~~~~~~-------~~d~~G~-TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  246 (763)
                      +|++. |++++       ..+..+. |.||+....... ......+++++|+++||++|..+.              .+.
T Consensus       173 lLi~~-g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~-~~~n~~eiv~lLIs~GadIN~kd~--------------~G~  236 (672)
T PHA02730        173 WLLKS-ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRE-SESLSKDVIKCLIDNNVSIHGRDE--------------GGS  236 (672)
T ss_pred             HHHHc-CCcccccccccccccCCccchhHHHHHHhhhh-hhccCHHHHHHHHHCCCCCCCCCC--------------CCC
Confidence            99994 99985       2344444 566656655332 233468999999999999999884              478


Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHh
Q 004286          247 YPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVK  326 (763)
Q Consensus       247 ~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~  326 (763)
                      +|+||........  .++++.|++.-.+-..                .+..+                    ..|..   
T Consensus       237 TpLh~~~~~~~~~--~eiv~~Li~~~~~~~~----------------~~~~~--------------------~~~~~---  275 (672)
T PHA02730        237 LPIQYYWSCSTID--IEIVKLLIKDVDTCSV----------------YDDIS--------------------QPYIR---  275 (672)
T ss_pred             CHHHHHHHcCccc--HHHHHHHHhccccccc----------------ccccc--------------------chhhh---
Confidence            9999733322211  3445555442110000                00000                    00000   


Q ss_pred             hccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCc--------eeccCCCCCCCCC-CC--CcccccCcc-
Q 004286          327 LVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLY--------EYDYVGGKPLRRP-SS--QVEEDETIP-  394 (763)
Q Consensus       327 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~--------~~d~~G~tpL~~a-~~--~~~~~~~~~-  394 (763)
                                +.=...+.+-++.. .+.-..++|+.|++.+...        ..|..|.+-..+. ..  ....++.+. 
T Consensus       276 ----------~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q  344 (672)
T PHA02730        276 ----------GVLADYLNKRFRVT-PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQ  344 (672)
T ss_pred             ----------hhHHHhhhhhhhcc-cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHH
Confidence                      00000111111111 1122336777787754321        1122221100000 00  000000000 


Q ss_pred             cccc---cCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcCh---
Q 004286          395 YAIV---DGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGI---  468 (763)
Q Consensus       395 ~~~~---~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~---  468 (763)
                      ..+.   +.++     ....+++++|+++|+                         +++. +..|.||||+|+..++   
T Consensus       345 ~~l~~Y~~~~~-----~v~ieIvelLIs~GA-------------------------dIN~-k~~G~TpLH~Aa~~nnn~i  393 (672)
T PHA02730        345 AMLINYLHYGD-----MVSIPILRCMLDNGA-------------------------TMDK-TTDNNYPLHDYFVNNNNIV  393 (672)
T ss_pred             HHHHHHHhcCC-----cCcHHHHHHHHHCCC-------------------------CCCc-CCCCCcHHHHHHHHcCCcc
Confidence            0000   0000     011233344444443                         2333 3579999999999885   


Q ss_pred             -HHHHHHHHHhCCc-cccccccCCCchhHH---HHHcC---------ChHHHHHHHhccchhhhhhccccCCCCchhhhH
Q 004286          469 -TEIVEKILKSFPV-AILDMNSEKKNVMLL---AVENR---------QRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA  534 (763)
Q Consensus       469 -~eiv~~LL~~~~~-~~~~~d~~G~T~LH~---A~~~~---------~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~A  534 (763)
                       .+++++|+++++. +++.+|.+|+||||.   |...+         ..+++++|+++++    ++|.+|..|+||||+|
T Consensus       394 ~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA----DINakD~~G~TPLh~A  469 (672)
T PHA02730        394 DVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD----DIDMIDNENKTLLYYA  469 (672)
T ss_pred             hHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc----chhccCCCCCCHHHHH
Confidence             8999999996553 688899999999994   33332         2357999999998    7999999999999999


Q ss_pred             hhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCccccccccC-CCCChhhhhhh
Q 004286          535 ATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYND-QNKSAKDVFTE  587 (763)
Q Consensus       535 a~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~-~g~tp~d~~~~  587 (763)
                      +..++.+.+.             +  ++.....   .+.+|+ .|.||++.+..
T Consensus       470 a~~~~~eive-------------~--LI~~GAd---IN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        470 VDVNNIQFAR-------------R--LLEYGAS---VNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             HHhCCHHHHH-------------H--HHHCCCC---CCCCCCcCCcCHHHHHHH
Confidence            9998743321             1  1222222   347776 59999998865

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.1e-37  Score=350.17  Aligned_cols=344  Identities=10%  Similarity=0.024  Sum_probs=243.2

Q ss_pred             CCCChHHHHH-----HHcCCHHHHHHHHHHhhhhccccccccC-CCCCchHHHHHHH--cCCHHHHHHHHhcCCCccCCC
Q 004286           43 RSGGTALHIA-----VSDGQEEIVEDLVRIIHEKQQLKVLKIG-DERGSTPLHIAAG--LGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        43 ~~g~TpLh~A-----~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-d~~g~TpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      ..+..+++..     .+.++.++|++|++.|.     +++|.+ |..|.||||+|+.  .++.+++++|+++|++ ++.+
T Consensus       135 ~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~-----ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~k  208 (764)
T PHA02716        135 NGDMDILYTYFNSPNTRGIDLDLIKYMVDVGI-----VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQ  208 (764)
T ss_pred             cccchHHHHHHhhhcccCCCHHHHHHHHHCCC-----CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCC
Confidence            3455555544     34688999999999872     568888 8999999999865  4678999999999999 9999


Q ss_pred             CCCCChHHHHHHHcCC--HHHHHHHHHcCCCCCCCCccccCCCCChHHHHH-----------------------------
Q 004286          115 NHENETPFFLAARHGH--KDAFLCLHYLCASVDDGYNYSRRKNGETILHYA-----------------------------  163 (763)
Q Consensus       115 ~~~g~TpLh~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A-----------------------------  163 (763)
                      |..|.||||+|++.|+  .++|++|+++|++++     .+|..|+||||+|                             
T Consensus       209 D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN-----~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~  283 (764)
T PHA02716        209 NNHLITPLHTYLITGNVCASVIKKIIELGGDMD-----MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPM  283 (764)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchh
Confidence            9999999999999995  499999999999999     8999999999975                             


Q ss_pred             --------HHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCcccccccccc
Q 004286          164 --------ISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQ  235 (763)
Q Consensus       164 --------~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  235 (763)
                              +..|+. +++++|++ .|++++.+|.+|+||||+|+..++     .+.+++++|+++|++++..+..     
T Consensus       284 ~L~~~i~AA~~g~l-eiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~-----~~~eIVklLLe~GADIN~kD~~-----  351 (764)
T PHA02716        284 ILHSYITLARNIDI-SVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHN-----ISTDIIKLLHEYGNDLNEPDNI-----  351 (764)
T ss_pred             hhHHHHHHHHcCCH-HHHHHHHh-CCCceeccCCCCCCHHHHHHHHhC-----CCchHHHHHHHcCCCCccCCCC-----
Confidence                    345778 99999998 599999999999999999875432     1469999999999999987743     


Q ss_pred             chhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCC
Q 004286          236 HLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFP  315 (763)
Q Consensus       236 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p  315 (763)
                               +.+|+|++.....      .++.+ +.                                            
T Consensus       352 ---------G~TPLH~A~~~la------v~~~l-d~--------------------------------------------  371 (764)
T PHA02716        352 ---------GNTVLHTYLSMLS------VVNIL-DP--------------------------------------------  371 (764)
T ss_pred             ---------CCCHHHHHHHhhh------hhccc-cc--------------------------------------------
Confidence                     6788887632100      00000 00                                            


Q ss_pred             CCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCcc
Q 004286          316 PNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIP  394 (763)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~  394 (763)
                                                        ........++++.|+++|++.+ .|..|.||||.++....      
T Consensus       372 ----------------------------------~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~------  411 (764)
T PHA02716        372 ----------------------------------ETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQ------  411 (764)
T ss_pred             ----------------------------------cccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHH------
Confidence                                              0000113489999999999665 48999999994211100      


Q ss_pred             cccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHH
Q 004286          395 YAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEK  474 (763)
Q Consensus       395 ~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~  474 (763)
                                  ..++..++++|+..++.             .....+ ......+..|..+.. +|.++..++.++...
T Consensus       412 ------------n~~~~dIvklLis~~~~-------------~~~~~~-~~q~ll~~~d~~~~~-lhh~~a~~~~~~~~~  464 (764)
T PHA02716        412 ------------NYMYYDIIDCLISDKVL-------------NMVKHR-ILQDLLIRVDDTPCI-IHHIIAKYNIPTDLY  464 (764)
T ss_pred             ------------hcChHHHHHHHHhCcch-------------hhhhhh-hhhhhhhccCcchhh-HHHHHHhcCcchhhh
Confidence                        00223344454444330             000000 000001112222222 566665554443333


Q ss_pred             HHHh-----------------CCccccccccCCCchhHHHHHcCChH-----HHHHHHhccchhhhhhccccCCCCchhh
Q 004286          475 ILKS-----------------FPVAILDMNSEKKNVMLLAVENRQRH-----VYQLLLKTAIIQETVFRKVDDQGNSALH  532 (763)
Q Consensus       475 LL~~-----------------~~~~~~~~d~~G~T~LH~A~~~~~~~-----iv~~Ll~~~~~~~~~~n~~D~~G~TpLH  532 (763)
                      +.+.                 ....++..|..|+||||+|+.+|+.+     ++++|++.|+    ++|.+|++|+||||
T Consensus       465 ~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GA----DIN~~d~~G~TPLh  540 (764)
T PHA02716        465 TDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQY----NINIPTKNGVTPLM  540 (764)
T ss_pred             hhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCC----CCcccCCCCCCHHH
Confidence            2211                 12345778899999999999999874     4599999998    79999999999999


Q ss_pred             hHhhcCCC
Q 004286          533 LAATLGDH  540 (763)
Q Consensus       533 ~Aa~~g~~  540 (763)
                      +|+++|+.
T Consensus       541 ~A~~~g~~  548 (764)
T PHA02716        541 LTMRNNRL  548 (764)
T ss_pred             HHHHcCCc
Confidence            99999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-38  Score=353.41  Aligned_cols=182  Identities=16%  Similarity=0.155  Sum_probs=167.5

Q ss_pred             HHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH-----HHHcCCHH
Q 004286           24 NEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI-----AAGLGNVS   98 (763)
Q Consensus        24 ~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~-----Aa~~g~~~   98 (763)
                      ..+..++.+  +...+..+..+.||||+|+..|+.++|++|+++|      ++++..+..|.||||+     |+..|+.+
T Consensus        16 ~~~~~~~~~--~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g------~~~~~~~~~~~t~L~~~~~~~a~~~~~~~   87 (480)
T PHA03100         16 KNIKYIIME--DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNG------ADINSSTKNNSTPLHYLSNIKYNLTDVKE   87 (480)
T ss_pred             HHHHHHHhc--CccchhhhcccchhhhhhhccCCHHHHHHHHHcC------CCCCCccccCcCHHHHHHHHHHHhhchHH
Confidence            445556654  4555567889999999999999999999999998      6788899999999999     99999999


Q ss_pred             HHHHHHhcCCCccCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC--ChHHHHH
Q 004286           99 MCKCIATADPRLIGERNHENETPFFLAA--RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY--YFVDLAF  174 (763)
Q Consensus        99 ~v~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g--~~~~iv~  174 (763)
                      ++++|+++|++ ++..|..|.||||+|+  ..|+.+++++|+++|++++     ..|..|.||||+|+..|  +. ++++
T Consensus        88 iv~~Ll~~ga~-i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~-~iv~  160 (480)
T PHA03100         88 IVKLLLEYGAN-VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-----IKNSDGENLLHLYLESNKIDL-KILK  160 (480)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-----ccCCCCCcHHHHHHHcCCChH-HHHH
Confidence            99999999999 7999999999999999  9999999999999999998     89999999999999999  89 9999


Q ss_pred             HHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          175 QIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       175 ~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                      +|++ .|++++.+|..|.||||+|+..|+       .+++++|+++|++++..+
T Consensus       161 ~Ll~-~g~din~~d~~g~tpL~~A~~~~~-------~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        161 LLID-KGVDINAKNRYGYTPLHIAVEKGN-------IDVIKFLLDNGADINAGD  206 (480)
T ss_pred             HHHH-CCCCcccccCCCCCHHHHHHHhCC-------HHHHHHHHHcCCCccCCC
Confidence            9999 599999999999999999999985       799999999999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-37  Score=342.55  Aligned_cols=300  Identities=18%  Similarity=0.167  Sum_probs=233.6

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      +...+|||.|+..|+.+.|+.|+..  |++++..+..|.||||+|+..|+.+++++|+++|++      +..        
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~------~~~--------   96 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD------TSI--------   96 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCc--------
Confidence            3457899999999999999999987  899999999999999999999999999999998843      211        


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                        .+....+.++++.|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|
T Consensus        97 --~~~~~~~~~~i~~ll~~g~d-~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-----~~d~~g~tpLh~A~~~~  168 (434)
T PHA02874         97 --LPIPCIEKDMIKTILDCGID-VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-----IEDDNGCYPIHIAIKHN  168 (434)
T ss_pred             --chhccCCHHHHHHHHHCcCC-CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-----CcCCCCCCHHHHHHHCC
Confidence              12234567888888888887 88888888888888888888888888888888887     78888888888888888


Q ss_pred             ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCC
Q 004286          168 YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNY  247 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  247 (763)
                      +. +++++|++ .|++++..|..|.||||+|+..|+       .+++++|+++|++++..+..              +.+
T Consensus       169 ~~-~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~g~-------~~iv~~Ll~~g~~i~~~~~~--------------g~T  225 (434)
T PHA02874        169 FF-DIIKLLLE-KGAYANVKDNNGESPLHNAAEYGD-------YACIKLLIDHGNHIMNKCKN--------------GFT  225 (434)
T ss_pred             cH-HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCcCCCCC--------------CCC
Confidence            88 88888888 488888888888888888888874       68888888888887765522              345


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhh
Q 004286          248 PENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKL  327 (763)
Q Consensus       248 p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~  327 (763)
                      |++++...+                                                                       
T Consensus       226 pL~~A~~~~-----------------------------------------------------------------------  234 (434)
T PHA02874        226 PLHNAIIHN-----------------------------------------------------------------------  234 (434)
T ss_pred             HHHHHHHCC-----------------------------------------------------------------------
Confidence            555442110                                                                       


Q ss_pred             ccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCC
Q 004286          328 VSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADL  407 (763)
Q Consensus       328 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~  407 (763)
                                                   .+.++.|+.. +                                       
T Consensus       235 -----------------------------~~~i~~Ll~~-~---------------------------------------  245 (434)
T PHA02874        235 -----------------------------RSAIELLINN-A---------------------------------------  245 (434)
T ss_pred             -----------------------------hHHHHHHHcC-C---------------------------------------
Confidence                                         0223333321 1                                       


Q ss_pred             CCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcC-hHHHHHHHHHhCCcccccc
Q 004286          408 EGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNG-ITEIVEKILKSFPVAILDM  486 (763)
Q Consensus       408 ~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g-~~eiv~~LL~~~~~~~~~~  486 (763)
                                                              +.+.+|.+|.||||+|+..+ +.+++++|++ .+.+++.+
T Consensus       246 ----------------------------------------~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-~gad~n~~  284 (434)
T PHA02874        246 ----------------------------------------SINDQDIDGSTPLHHAINPPCDIDIIDILLY-HKADISIK  284 (434)
T ss_pred             ----------------------------------------CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-CcCCCCCC
Confidence                                                    11235678999999999976 8899999999 57778999


Q ss_pred             ccCCCchhHHHHHcC-ChHHHHHHHhccchhhhhhccccCCC-CchhhhHhhcCC
Q 004286          487 NSEKKNVMLLAVENR-QRHVYQLLLKTAIIQETVFRKVDDQG-NSALHLAATLGD  539 (763)
Q Consensus       487 d~~G~T~LH~A~~~~-~~~iv~~Ll~~~~~~~~~~n~~D~~G-~TpLH~Aa~~g~  539 (763)
                      |..|+||||+|++++ +.++++.|+..+.    .++..+..+ .+++..+....+
T Consensus       285 d~~g~TpL~~A~~~~~~~~~ik~ll~~~~----~~~~~~~~~~~~~~~~~~i~~~  335 (434)
T PHA02874        285 DNKGENPIDTAFKYINKDPVIKDIIANAV----LIKEADKLKDSDFLEHIEIKDN  335 (434)
T ss_pred             CCCCCCHHHHHHHhCCccHHHHHHHHhcC----chhhccccchhHHHHHHHHhcc
Confidence            999999999999998 7789999999886    344445544 556766655544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=347.65  Aligned_cols=203  Identities=18%  Similarity=0.142  Sum_probs=176.4

Q ss_pred             CCCCChhh----hhHHHHHHHHcC---CHHHHHHHHccCCCccccccCCCCChHHHHHHHcC-CHHHHHHHHHHhhhhcc
Q 004286            2 ATGIDIDQ----LKKGLFKSAMKG---KWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG-QEEIVEDLVRIIHEKQQ   73 (763)
Q Consensus         2 ~~~~d~~~----~~~~L~~aa~~g---~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g-~~~~v~~Ll~~g~~~~~   73 (763)
                      ..|+|++.    ..+|||.|+..|   +.+.++.++..  |++++.+|..|+||||+|+..| +.+++++|+++|     
T Consensus        35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g-----  107 (471)
T PHA03095         35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG-----  107 (471)
T ss_pred             HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC-----
Confidence            35666643    478999999998   77777777776  8999999999999999999999 599999999998     


Q ss_pred             ccccccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCc
Q 004286           74 LKVLKIGDERGSTPLHIAA--GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG--HKDAFLCLHYLCASVDDGYN  149 (763)
Q Consensus        74 ~~~~~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga~~~~~~~  149 (763)
                       ++++.+|..|+||||+|+  ..++.+++++|+++|++ ++.+|..|.||||+|+..+  +.+++++|+++|++++    
T Consensus       108 -a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~----  181 (471)
T PHA03095        108 -ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY----  181 (471)
T ss_pred             -CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc----
Confidence             779999999999999999  55689999999999999 9999999999999999876  6899999999999998    


Q ss_pred             cccCCCCChHHHHHHHc--CChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          150 YSRRKNGETILHYAISG--YYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       150 ~~~d~~G~TpLh~A~~~--g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                       ..|..|.||||+|+..  ++. ++++.|++ .|++++.+|..|.||||+|+..++.     ...+++.|+++|+++|
T Consensus       182 -~~d~~g~t~Lh~~~~~~~~~~-~i~~~Ll~-~g~~~~~~d~~g~tpLh~Aa~~~~~-----~~~~v~~ll~~g~din  251 (471)
T PHA03095        182 -AVDDRFRSLLHHHLQSFKPRA-RIVRELIR-AGCDPAATDMLGNTPLHSMATGSSC-----KRSLVLPLLIAGISIN  251 (471)
T ss_pred             -ccCCCCCCHHHHHHHHCCCcH-HHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCc-----hHHHHHHHHHcCCCCC
Confidence             6799999999999975  677 99999999 5999999999999999999998742     2345666666665554

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-37  Score=345.37  Aligned_cols=196  Identities=17%  Similarity=0.154  Sum_probs=182.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHH-----HHHcCCHHHHHHHHHHhhhhccccccccCCCCC
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHI-----AVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERG   84 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g   84 (763)
                      ..+|||.|+..|+.+.|+.+|..  |++++..+..|.||||+     |+..|+.+++++|+++|      ++++..|..|
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g------a~i~~~d~~g  106 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG------ANVNAPDNNG  106 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC------CCCCCCCCCC
Confidence            46899999999999999999988  89999999999999999     99999999999999998      6688999999


Q ss_pred             chHHHHHH--HcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCccccCCCCChHH
Q 004286           85 STPLHIAA--GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG--HKDAFLCLHYLCASVDDGYNYSRRKNGETIL  160 (763)
Q Consensus        85 ~TpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpL  160 (763)
                      .||||+|+  ..|+.+++++|+++|++ ++..+..|.||||+|+..|  +.+++++|+++|++++     .+|..|.|||
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-----~~d~~g~tpL  180 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-----AKNRYGYTPL  180 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-----cccCCCCCHH
Confidence            99999999  99999999999999998 9999999999999999999  9999999999999998     8899999999


Q ss_pred             HHHHHcCChHHHHHHHHHhccccccccccCC------CcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          161 HYAISGYYFVDLAFQIIHLYEKLVNFVNERG------VSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       161 h~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G------~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      |+|+..|+. +++++|++ .|++++..+..|      .||||.|+..++.     ..+++++|+++|++++.
T Consensus       181 ~~A~~~~~~-~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~-----~~~iv~~Ll~~g~din~  245 (480)
T PHA03100        181 HIAVEKGNI-DVIKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEI-----TLEVVNYLLSYGVPINI  245 (480)
T ss_pred             HHHHHhCCH-HHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcC-----cHHHHHHHHHcCCCCCC
Confidence            999999999 99999999 599999999999      8999999998841     25888888888877663

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-36  Score=338.63  Aligned_cols=302  Identities=15%  Similarity=0.081  Sum_probs=202.1

Q ss_pred             HHHHHHcCCHHHHHHHHccCC--CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           14 LFKSAMKGKWNEVVENYGKDD--RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        14 L~~aa~~g~~~~v~~lL~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      |+.+....+.+.+.+.+....  +...+..+..+.||||+||..|+.++|++|+++|      ++++.+|..|+||||+|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g------advn~~d~~g~TpLh~A   77 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRG------HNVNQPDHRDLTPLHII   77 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHH
Confidence            455555555555555554311  1111223456777777777777777777777776      56777777777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC--Ch
Q 004286           92 AGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY--YF  169 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g--~~  169 (763)
                      |..|+.++++.|++.+.. .+.  ..+.+|++.|+..|+.+++++|+..+.+..      .+.+ ...+..+...+  +.
T Consensus        78 ~~~g~~~~v~~Ll~~~~~-~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~------~~~~-~~~~~~~~~~~~~~~  147 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINK-CSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNI------QTID-LVYIDKKSKDDIIEA  147 (477)
T ss_pred             HHCccHhHHHHHHHHHhc-ccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCc------ccCc-HHHHhhccchhhHHH
Confidence            777777777777776554 222  456777777777777777777776654332      0000 01111111112  23


Q ss_pred             HHHHHHHHHhccccccccccC-CCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCC
Q 004286          170 VDLAFQIIHLYEKLVNFVNER-GVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYP  248 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~-G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p  248 (763)
                       +++++|++ .|++++..|.. |.||||+|+..|+       .+++++|+++|++++..+..              +.+|
T Consensus       148 -~iv~~Ll~-~gadin~~~~~~g~tpLh~A~~~~~-------~~iv~~Ll~~gad~n~~d~~--------------g~tp  204 (477)
T PHA02878        148 -EITKLLLS-YGADINMKDRHKGNTALHYATENKD-------QRLTELLLSYGANVNIPDKT--------------NNSP  204 (477)
T ss_pred             -HHHHHHHH-cCCCCCccCCCCCCCHHHHHHhCCC-------HHHHHHHHHCCCCCCCcCCC--------------CCCH
Confidence             47777777 47777777777 7777777777764       57777777777777765522              4455


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhc
Q 004286          249 ENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLV  328 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~  328 (763)
                      ++++...+                                                                        
T Consensus       205 Lh~A~~~~------------------------------------------------------------------------  212 (477)
T PHA02878        205 LHHAVKHY------------------------------------------------------------------------  212 (477)
T ss_pred             HHHHHHhC------------------------------------------------------------------------
Confidence            55442210                                                                        


Q ss_pred             cchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCC
Q 004286          329 SKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLE  408 (763)
Q Consensus       329 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~  408 (763)
                                                 ..++++.|++.|++.                                      
T Consensus       213 ---------------------------~~~iv~~Ll~~ga~i--------------------------------------  227 (477)
T PHA02878        213 ---------------------------NKPIVHILLENGAST--------------------------------------  227 (477)
T ss_pred             ---------------------------CHHHHHHHHHcCCCC--------------------------------------
Confidence                                       115666666654321                                      


Q ss_pred             CCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHc-ChHHHHHHHHHhCCccccccc
Q 004286          409 GDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKN-GITEIVEKILKSFPVAILDMN  487 (763)
Q Consensus       409 g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~-g~~eiv~~LL~~~~~~~~~~d  487 (763)
                                                               +.+|..|.||||+|+.. ++.+++++|++ .+.+++.++
T Consensus       228 -----------------------------------------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~  265 (477)
T PHA02878        228 -----------------------------------------DARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKS  265 (477)
T ss_pred             -----------------------------------------CCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccC
Confidence                                                     12466799999999976 79999999999 566677777


Q ss_pred             c-CCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          488 S-EKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       488 ~-~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      . .|+||||+|  .++.+++++|++.|+    ++|.+|.+|+||||+|++.+.
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~~ga----din~~d~~g~TpL~~A~~~~~  312 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLEYGA----DINSLNSYKLTPLSSAVKQYL  312 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHHcC
Confidence            5 799999999  578899999999998    799999999999999998653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=339.35  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=164.6

Q ss_pred             HHHHHHH---cCCHHHHHHHHccCCCccccccCCCCChHHHHHHHc--CCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286           13 GLFKSAM---KGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSD--GQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus        13 ~L~~aa~---~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      .||....   ..+.+.|+.||..  |+++|.. ..|.||||.++..  ++.++|++|+++|      +++|.++ .+.||
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~--GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G------Advn~~~-~~~tp   72 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRT--GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG------ADVNYKG-YIETP   72 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHc--CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC------CCccCCC-CCCCc
Confidence            4554433   4778888888877  8999987 6799999876654  3799999999999      6677776 57999


Q ss_pred             HHHHHHcC------CHHHHHHHHhcCCCccCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCccccCCCCC
Q 004286           88 LHIAAGLG------NVSMCKCIATADPRLIGERNHENETPFFLAARH---GHKDAFLCLHYLCASV-DDGYNYSRRKNGE  157 (763)
Q Consensus        88 Lh~Aa~~g------~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~ga~~-~~~~~~~~d~~G~  157 (763)
                      ||.|+..+      +.+++++|+++|++ +|.+|..|.||||.|+..   |+.+++++|+++|+++ +     .+|..|+
T Consensus        73 L~~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~-----~~d~~g~  146 (494)
T PHA02989         73 LCAVLRNREITSNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVND-----VKNSRGY  146 (494)
T ss_pred             HHHHHhccCcchhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccc-----ccCCCCC
Confidence            99998754      57899999999999 999999999999998765   6799999999999999 6     8999999


Q ss_pred             hHHHHHHHc--CChHHHHHHHHHhccccccc-cccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          158 TILHYAISG--YYFVDLAFQIIHLYEKLVNF-VNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       158 TpLh~A~~~--g~~~~iv~~LL~~~~~~~~~-~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                      ||||+|+..  ++. +++++|++ .|++++. .+..|.||||+|+..+.   ...+.+++++|+++|++++..+
T Consensus       147 tpLh~a~~~~~~~~-~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a~~~~~---~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        147 NLLHMYLESFSVKK-DVIKILLS-FGVNLFEKTSLYGLTPMNIYLRNDI---DVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             CHHHHHHHhccCCH-HHHHHHHH-cCCCccccccccCCChHHHHHhccc---ccccHHHHHHHHhCCCCccccC
Confidence            999999864  578 99999999 5999998 68899999999987641   1225799999999999999766

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.5e-36  Score=303.31  Aligned_cols=175  Identities=14%  Similarity=0.097  Sum_probs=151.0

Q ss_pred             HHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHH
Q 004286           24 NEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI  103 (763)
Q Consensus        24 ~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~L  103 (763)
                      .++.++|.+. ++  +..|.+|+||||+|+..|+.+++++|+++|      ++++..+  |+||||+|+..|+.+++++|
T Consensus        12 ~~~~~~Lis~-~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g------a~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791         12 KQLKSFLSSK-DA--FKADVHGHSALYYAIADNNVRLVCTLLNAG------ALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             HHHHHHHHhC-CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCc------CCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            3455555553 44  457999999999999999999999999998      4455544  78999999999999999999


Q ss_pred             HhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCC-hHHHHHHHcCChHHHHHHHHHhccc
Q 004286          104 ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHLYEK  182 (763)
Q Consensus       104 l~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~-TpLh~A~~~g~~~~iv~~LL~~~~~  182 (763)
                      +++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .++..|+ ||||+|+..|+. +++++|+++ +.
T Consensus        81 L~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-----~~~~~g~~TpL~~Aa~~g~~-eivk~LL~~-~~  152 (284)
T PHA02791         81 LFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDV-SIVSYFLSE-IP  152 (284)
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-----ccCCCCCcHHHHHHHHcCCH-HHHHHHHhc-CC
Confidence            999998 89999999999999999999999999999999998     7888884 899999999999 999999996 32


Q ss_pred             cccccc-cCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          183 LVNFVN-ERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       183 ~~~~~d-~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +  ..| ..|.||||+|+.+|+       .+++++|+++|++++.
T Consensus       153 ~--~~d~~~g~TpLh~Aa~~g~-------~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        153 S--TFDLAILLSCIHITIKNGH-------VDMMILLLDYMTSTNT  188 (284)
T ss_pred             c--ccccccCccHHHHHHHcCC-------HHHHHHHHHCCCCCCc
Confidence            2  223 358999999999995       7999999999988874

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-36  Score=304.17  Aligned_cols=142  Identities=15%  Similarity=0.086  Sum_probs=128.2

Q ss_pred             cCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHH
Q 004286           55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAF  134 (763)
Q Consensus        55 ~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v  134 (763)
                      .++.+++++|+++|        .+.+|.+|+||||+|+..|+.+++++|+++|++ ++.++  |+||||+|+..|+.+++
T Consensus         9 ~~~~~~~~~Lis~~--------a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-~n~~d--~~TpLh~Aa~~g~~eiV   77 (284)
T PHA02791          9 WKSKQLKSFLSSKD--------AFKADVHGHSALYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIV   77 (284)
T ss_pred             cCHHHHHHHHHhCC--------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-CcCCC--CCCHHHHHHHCCCHHHH
Confidence            46789999999987        256899999999999999999999999999987 67654  78999999999999999


Q ss_pred             HHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCC-cHHHHHhcCCCCccCCchHHH
Q 004286          135 LCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV-SPLHLLATKPNAFRSGSHLGL  213 (763)
Q Consensus       135 ~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~-TpLh~A~~~~~~~~~~~~~~i  213 (763)
                      ++|+++|++++     .+|..|+||||+|+..|+. +++++|++ .|++++.++..|+ ||||+|+..++       .++
T Consensus        78 ~lLL~~Gadvn-----~~d~~G~TpLh~Aa~~g~~-eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~-------~ei  143 (284)
T PHA02791         78 KILLFSGMDDS-----QFDDKGNTALYYAVDSGNM-QTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLND-------VSI  143 (284)
T ss_pred             HHHHHCCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCC-------HHH
Confidence            99999999998     8999999999999999999 99999999 5999999999985 89999999985       577


Q ss_pred             HHHHHHcC
Q 004286          214 CTGIIYHC  221 (763)
Q Consensus       214 v~~Ll~~g  221 (763)
                      +++|+++|
T Consensus       144 vk~LL~~~  151 (284)
T PHA02791        144 VSYFLSEI  151 (284)
T ss_pred             HHHHHhcC
Confidence            77776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-36  Score=268.42  Aligned_cols=199  Identities=25%  Similarity=0.196  Sum_probs=178.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      .+.+.++.......+.+++...+.....+.|.+|+||||+||+.|+.++|++|++.     .+..+|-+|..||||||+|
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-----~nv~~ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-----PNVKPDDKDDAGWTPLHIA   79 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-----CCCCCCCccccCCchhhhh
Confidence            34566677777778889998876444444456999999999999999999999973     2366888999999999999


Q ss_pred             HHcCCHHHHHHHHhc-CCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChH
Q 004286           92 AGLGNVSMCKCIATA-DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                      |..|+.++|+.|+.+ +++ +|..++.|+||||||+..|..+++++|+++|+.++     .+|..|.||||.|+..|.. 
T Consensus        80 ~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-----~kD~~~qtplHRAAavGkl-  152 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-----IKDKQGQTPLHRAAAVGKL-  152 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-----ccccccCchhHHHHhccch-
Confidence            999999999999999 777 99999999999999999999999999999999999     9999999999999999999 


Q ss_pred             HHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          171 DLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       171 ~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                      +++++|+. .++.+|..|+.|+||||.|...+       +.+...+|+++||+++..|.+
T Consensus       153 kvie~Li~-~~a~~n~qDk~G~TpL~~al~e~-------~~d~a~lLV~~gAd~~~edke  204 (226)
T KOG4412|consen  153 KVIEYLIS-QGAPLNTQDKYGFTPLHHALAEG-------HPDVAVLLVRAGADTDREDKE  204 (226)
T ss_pred             hhHHHHHh-cCCCCCcccccCccHHHHHHhcc-------CchHHHHHHHhccceeecccc
Confidence            99999999 58999999999999999996555       459999999999999998865

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-35  Score=323.10  Aligned_cols=161  Identities=22%  Similarity=0.156  Sum_probs=140.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      .+++||.|+..|+.+++++|+++|      ++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..+.||||+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g------~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~   74 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG------INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHD   74 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHH
Confidence            578999999999999999999988      66888888999999999999999999999999987 78888889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC
Q 004286          125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA  204 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~  204 (763)
                      |+..|+.+++++|++.|++.+.    ..+.+|.||||+|+..|+. +++++|++ .|++++..+..|.||||+|+..|+ 
T Consensus        75 A~~~g~~~~v~~Ll~~~~~~~~----~~~~~g~tpL~~A~~~~~~-~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~-  147 (413)
T PHA02875         75 AVEEGDVKAVEELLDLGKFADD----VFYKDGMTPLHLATILKKL-DIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGD-  147 (413)
T ss_pred             HHHCCCHHHHHHHHHcCCcccc----cccCCCCCHHHHHHHhCCH-HHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCC-
Confidence            9999999999999999887652    5567899999999999999 99999998 489999999999999999999885 


Q ss_pred             ccCCchHHHHHHHHHcCCCCC
Q 004286          205 FRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       205 ~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                            .+++++|+++|++++
T Consensus       148 ------~~~v~~Ll~~g~~~~  162 (413)
T PHA02875        148 ------IKGIELLIDHKACLD  162 (413)
T ss_pred             ------HHHHHHHHhcCCCCC
Confidence                  588888887776655

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-36  Score=264.11  Aligned_cols=162  Identities=23%  Similarity=0.330  Sum_probs=93.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE-RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      +.++.+.+|......-++.+++...     ..++.++. +|+|||||||..|+.+++++|++.....+|.+|..||||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~-----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP-----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh-----hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhh
Confidence            3455566666655555666655432     23455544 56666666666666666666664332235555666666666


Q ss_pred             HHHHcCCHHHHHHHHHc-CCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          124 LAARHGHKDAFLCLHYL-CASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      +||..|+.++|+.|+.+ |+++|     ..+..|+|+||||+.+|.. ||+++|++ .|+.++.+|..|.||||.|+..|
T Consensus        78 ia~s~g~~evVk~Ll~r~~advn-----a~tn~G~T~LHyAagK~r~-eIaqlLle-~ga~i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGADVN-----ATTNGGQTCLHYAAGKGRL-EIAQLLLE-KGALIRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCCcc-----eecCCCcceehhhhcCChh-hHHHHHHh-cCCCCcccccccCchhHHHHhcc
Confidence            66666666666666655 55555     5666666666666666666 66666666 35666666666666666666655


Q ss_pred             CCccCCchHHHHHHHHHcCCCCC
Q 004286          203 NAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      +       ++++++|++.|+.+|
T Consensus       151 k-------lkvie~Li~~~a~~n  166 (226)
T KOG4412|consen  151 K-------LKVIEYLISQGAPLN  166 (226)
T ss_pred             c-------hhhHHHHHhcCCCCC
Confidence            3       455555555554444

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=317.93  Aligned_cols=194  Identities=15%  Similarity=0.111  Sum_probs=181.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      +.+|+.|+..|+.+.++.|+..  |++++..+..|.||||+|+..|+.+++++|+++|      ++++..+..+.||||+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g------a~~~~~~~~~~t~L~~   74 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG------AIPDVKYPDIESELHD   74 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCccccCCCcccHHHH
Confidence            5789999999999999999987  8999999999999999999999999999999998      5677888899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChH
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                      |+..|+.++++.|++.|+...+..+.+|.||||+|+..|+.+++++|+++|++++     .++..|.||||+|+..|+. 
T Consensus        75 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-----~~~~~g~tpLh~A~~~~~~-  148 (413)
T PHA02875         75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-----IPNTDKFSPLHLAVMMGDI-  148 (413)
T ss_pred             HHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-----CCCCCCCCHHHHHHHcCCH-
Confidence            9999999999999999988566778889999999999999999999999999999     8999999999999999999 


Q ss_pred             HHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          171 DLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       171 ~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +++++|++ .|++++.+|..|.||||+|+..|+       .+++++|+++|++++.
T Consensus       149 ~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~-------~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        149 KGIELLID-HKACLDIEDCCGCTPLIIAMAKGD-------IAICKMLLDSGANIDY  196 (413)
T ss_pred             HHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCc
Confidence            99999999 599999999999999999999985       6999999999988874

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-35  Score=326.57  Aligned_cols=278  Identities=13%  Similarity=0.084  Sum_probs=212.2

Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCC
Q 004286           78 KIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE  157 (763)
Q Consensus        78 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~  157 (763)
                      +..+..+.||||+|+..|+.++|++|+++|++ ++.+|.+|.||||+||..|+.++++.|++.+.+.+     .  ..+.
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~-----~--~~~~  102 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS-----V--FYTL  102 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc-----c--ccch
Confidence            34466799999999999999999999999998 99999999999999999999999999999987654     2  5788


Q ss_pred             hHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccch
Q 004286          158 TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHL  237 (763)
Q Consensus       158 TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~  237 (763)
                      +|||.|+..++. ++++.|+.. +.+... +. ....+......+.     ...+++++|+++|++++..+..       
T Consensus       103 ~~l~~a~~~~~~-ei~~~Ll~~-~~~~~~-~~-~~~~~~~~~~~~~-----~~~~iv~~Ll~~gadin~~~~~-------  166 (477)
T PHA02878        103 VAIKDAFNNRNV-EIFKIILTN-RYKNIQ-TI-DLVYIDKKSKDDI-----IEAEITKLLLSYGADINMKDRH-------  166 (477)
T ss_pred             hhHHHHHHcCCH-HHHHHHHhC-cccCcc-cC-cHHHHhhccchhh-----HHHHHHHHHHHcCCCCCccCCC-------
Confidence            999999999999 999999985 322111 00 1111111111111     1246999999999999976622       


Q ss_pred             hhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCC
Q 004286          238 FTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPN  317 (763)
Q Consensus       238 ~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~  317 (763)
                            .+.+|+|++...+                                                             
T Consensus       167 ------~g~tpLh~A~~~~-------------------------------------------------------------  179 (477)
T PHA02878        167 ------KGNTALHYATENK-------------------------------------------------------------  179 (477)
T ss_pred             ------CCCCHHHHHHhCC-------------------------------------------------------------
Confidence                  2456777663211                                                             


Q ss_pred             CCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCccccc
Q 004286          318 YGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAI  397 (763)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~  397 (763)
                                                            ..++++.|++.|++.                           
T Consensus       180 --------------------------------------~~~iv~~Ll~~gad~---------------------------  194 (477)
T PHA02878        180 --------------------------------------DQRLTELLLSYGANV---------------------------  194 (477)
T ss_pred             --------------------------------------CHHHHHHHHHCCCCC---------------------------
Confidence                                                  126778888774432                           


Q ss_pred             ccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHH
Q 004286          398 VDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILK  477 (763)
Q Consensus       398 ~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~  477 (763)
                                                                          +..|..|.||||.|++.|+.++++.|++
T Consensus       195 ----------------------------------------------------n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        195 ----------------------------------------------------NIPDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             ----------------------------------------------------CCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence                                                                2256789999999999999999999999


Q ss_pred             hCCccccccccCCCchhHHHHHc-CChHHHHHHHhccchhhhhhccccC-CCCchhhhHhhcCCCCCcCCchhhhhhhhh
Q 004286          478 SFPVAILDMNSEKKNVMLLAVEN-RQRHVYQLLLKTAIIQETVFRKVDD-QGNSALHLAATLGDHKPWLIPGAALQMQWE  555 (763)
Q Consensus       478 ~~~~~~~~~d~~G~T~LH~A~~~-~~~~iv~~Ll~~~~~~~~~~n~~D~-~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~  555 (763)
                       .+.+++.+|..|+||||+|+.. ++.+++++|+++|+    ++|.+|. .|+||||+|+.  +.+.             
T Consensus       223 -~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga----dvn~~~~~~g~TpLh~A~~--~~~~-------------  282 (477)
T PHA02878        223 -NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV----DVNAKSYILGLTALHSSIK--SERK-------------  282 (477)
T ss_pred             -cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC----CCCccCCCCCCCHHHHHcc--CHHH-------------
Confidence             5778899999999999999976 78999999999998    6888886 89999999943  3111             


Q ss_pred             hHHHHHHhhcCCccccccccCCCCChhhhhhhh
Q 004286          556 LKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTET  588 (763)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~n~~g~tp~d~~~~~  588 (763)
                      +++  .++....   .+..|.+|.||++++.+.
T Consensus       283 v~~--Ll~~gad---in~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        283 LKL--LLEYGAD---INSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHH--HHHCCCC---CCCcCCCCCCHHHHHHHH
Confidence            111  2233333   458899999999998653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-35  Score=297.63  Aligned_cols=197  Identities=21%  Similarity=0.243  Sum_probs=167.7

Q ss_pred             HHHHHHcCCHHHHHHHHccCCCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHHH-hhhhccc--cccccCCCCCchH
Q 004286           14 LFKSAMKGKWNEVVENYGKDDRIH---EARITRSGGTALHIAVSDGQEEIVEDLVRI-IHEKQQL--KVLKIGDERGSTP   87 (763)
Q Consensus        14 L~~aa~~g~~~~v~~lL~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~--~~~~~~d~~g~Tp   87 (763)
                      .+.||..|+...+..++.......   .-..+.+|.|||-+||++||.++|++|+++ ++++...  ...+-....|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            447888999888888887643211   112357899999999999999999999995 3333221  2233345678999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      |-.|+..||.++|+.|+++|++ +|.......|||--||..||.++|++|+++|+|++     ..|..|.|.||+||.+|
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~-VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-----IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGAS-VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-----IANRHGHTCLMIACYKG  161 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCc-cccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-----ccccCCCeeEEeeeccC
Confidence            9999999999999999999988 99998899999999999999999999999999999     99999999999999999


Q ss_pred             ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          168 YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      +. +|+++|++. |+|+|.++..|.|+||.+++.|+       ++++++|+++|+.++
T Consensus       162 h~-~I~qyLle~-gADvn~ks~kGNTALH~caEsG~-------vdivq~Ll~~ga~i~  210 (615)
T KOG0508|consen  162 HV-DIAQYLLEQ-GADVNAKSYKGNTALHDCAESGS-------VDIVQLLLKHGAKID  210 (615)
T ss_pred             ch-HHHHHHHHh-CCCcchhcccCchHHHhhhhccc-------HHHHHHHHhCCceee
Confidence            99 999999995 99999999999999999999985       688887777776655

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=323.60  Aligned_cols=184  Identities=14%  Similarity=0.062  Sum_probs=157.4

Q ss_pred             CCCCChhh---hhHHHHHHHHcC--CHHHHHHHHccCCCccccccCCCCChHHHHHHHcC------CHHHHHHHHHHhhh
Q 004286            2 ATGIDIDQ---LKKGLFKSAMKG--KWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG------QEEIVEDLVRIIHE   70 (763)
Q Consensus         2 ~~~~d~~~---~~~~L~~aa~~g--~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g------~~~~v~~Ll~~g~~   70 (763)
                      ..|+|++.   ..++|++++..+  +.+.|+.||+.  |+++|..+ .+.||||.|+..+      +.+++++|+++|  
T Consensus        24 ~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~G--   98 (494)
T PHA02989         24 RTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFG--   98 (494)
T ss_pred             HcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCC--
Confidence            46788764   357887766654  45666666666  89999876 6799999998754      578999999998  


Q ss_pred             hccccccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCcc-CCCCCCCChHHHHHHHc--CCHHHHHHHHHcCCCC
Q 004286           71 KQQLKVLKIGDERGSTPLHIAAGL---GNVSMCKCIATADPRLI-GERNHENETPFFLAARH--GHKDAFLCLHYLCASV  144 (763)
Q Consensus        71 ~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~-~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~ga~~  144 (763)
                          +++|.+|..|.||||.|+..   |+.+++++|+++|++ + +.+|..|.||||+|+..  ++.+++++|+++|+++
T Consensus        99 ----adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989         99 ----ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             ----CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence                77999999999999998765   689999999999999 8 88999999999999864  6899999999999999


Q ss_pred             CCCCccc-cCCCCChHHHHHHHcC----ChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          145 DDGYNYS-RRKNGETILHYAISGY----YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       145 ~~~~~~~-~d~~G~TpLh~A~~~g----~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      +     . .+..|.||||+|++.+    +. +++++|++ .|++++..|..|.||||.++..+
T Consensus       174 ~-----~~~~~~g~tpL~~a~~~~~~~~~~-~iv~~Ll~-~Ga~vn~~~~~~~t~l~~~~~~~  229 (494)
T PHA02989        174 F-----EKTSLYGLTPMNIYLRNDIDVISI-KVIKYLIK-KGVNIETNNNGSESVLESFLDNN  229 (494)
T ss_pred             c-----ccccccCCChHHHHHhcccccccH-HHHHHHHh-CCCCccccCCccccHHHHHHHhc
Confidence            8     5 6889999999998765    88 99999999 59999999999999999988754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=291.18  Aligned_cols=188  Identities=22%  Similarity=0.230  Sum_probs=170.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCcccc--------ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCC
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEA--------RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGD   81 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~--------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d   81 (763)
                      ..+||..||++|+.+.|..+|++. ++++.        -....|-+||..|+..||.++|+.|+++|      +++|...
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g------a~VN~tT  114 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG------ASVNDTT  114 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc------Ccccccc
Confidence            368999999999999998888753 44333        33567899999999999999999999998      6788888


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHH
Q 004286           82 ERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH  161 (763)
Q Consensus        82 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh  161 (763)
                      ....|||.-||.-|+.++|++|+++|++ ++..|+.|.|.||+||.+||.+++++|++.|+|+|     .++..|+|+||
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-----~ks~kGNTALH  188 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-----AKSYKGNTALH  188 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-----hhcccCchHHH
Confidence            8899999999999999999999999999 99999999999999999999999999999999999     89999999999


Q ss_pred             HHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHc
Q 004286          162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYH  220 (763)
Q Consensus       162 ~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~  220 (763)
                      .|++.|+. |++++|++ +|+.++ +|..|.|||..|+..|       +.++|+.|++.
T Consensus       189 ~caEsG~v-divq~Ll~-~ga~i~-~d~~GmtPL~~Aa~tG-------~~~iVe~L~~~  237 (615)
T KOG0508|consen  189 DCAESGSV-DIVQLLLK-HGAKID-VDGHGMTPLLLAAVTG-------HTDIVERLLQC  237 (615)
T ss_pred             hhhhcccH-HHHHHHHh-CCceee-ecCCCCchHHHHhhhc-------chHHHHHHhcC
Confidence            99999999 99999999 587665 5777999999999998       46999999973

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-34  Score=319.19  Aligned_cols=197  Identities=15%  Similarity=0.125  Sum_probs=162.5

Q ss_pred             HHHHHHHHc---CCHHHHHHHHccCCCccccccCCCCChHHHHHHH--cCCHHHHHHHHHHhhhhccccccccCCCCCch
Q 004286           12 KGLFKSAMK---GKWNEVVENYGKDDRIHEARITRSGGTALHIAVS--DGQEEIVEDLVRIIHEKQQLKVLKIGDERGST   86 (763)
Q Consensus        12 ~~L~~aa~~---g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~T   86 (763)
                      .+|+..+..   =+.+.|+.+|..  + +++.. ..|.|+++.+..  .++.++|++|+++|      +++|.+|..|.|
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll~~--~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~G------advn~~d~~g~T   73 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLIKS--C-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLG------ANVNGLDNEYST   73 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHHhc--C-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCC------CCCCCCCCCCCC
Confidence            345555443   245577777754  3 33333 457788775554  44799999999998      779999999999


Q ss_pred             HHHHHHHc-----CCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCCCCccccCCCCCh
Q 004286           87 PLHIAAGL-----GNVSMCKCIATADPRLIGERNHENETPFFLAARHG---HKDAFLCLHYLCASVDDGYNYSRRKNGET  158 (763)
Q Consensus        87 pLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g---~~~~v~~Ll~~ga~~~~~~~~~~d~~G~T  158 (763)
                      |||.|+..     ++.+++++|+++|++ +|.+|..|+||||+|+..+   +.+++++|+++|++++     .+|.+|.|
T Consensus        74 pL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-----~~d~~g~t  147 (489)
T PHA02798         74 PLCTILSNIKDYKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-----LLDKDGFT  147 (489)
T ss_pred             hHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-----ccCCCCCc
Confidence            99999864     679999999999999 9999999999999999986   7899999999999999     89999999


Q ss_pred             HHHHHHHcCC---hHHHHHHHHHhccccccccc-cCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCcccc
Q 004286          159 ILHYAISGYY---FVDLAFQIIHLYEKLVNFVN-ERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQE  229 (763)
Q Consensus       159 pLh~A~~~g~---~~~iv~~LL~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  229 (763)
                      |||+|++.++   . +++++|+++ |++++..+ ..|.||||.++....   ...+.+++++|+++|++++..+.
T Consensus       148 pL~~a~~~~~~~~~-~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~---~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        148 MLQVYLQSNHHIDI-EIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNI---DRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             HHHHHHHcCCcchH-HHHHHHHHh-CCCcccccCcCCCcHHHHHHHhcc---ccCCHHHHHHHHHCCCCcccCCc
Confidence            9999999998   8 999999995 99999885 579999999987531   12257999999999999987663

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=307.83  Aligned_cols=169  Identities=14%  Similarity=0.044  Sum_probs=148.4

Q ss_pred             HHHHHHHH--cCCHHHHHHHHccCCCccccccCCCCChHHHHHHHc-----CCHHHHHHHHHHhhhhccccccccCCCCC
Q 004286           12 KGLFKSAM--KGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSD-----GQEEIVEDLVRIIHEKQQLKVLKIGDERG   84 (763)
Q Consensus        12 ~~L~~aa~--~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g   84 (763)
                      ++++.+..  .++.+.|+.|+..  |++++..|..|.||||.|+..     ++.+++++|+++|      +++|.+|..|
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G------adiN~~d~~G  109 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG------ADINKKNSDG  109 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC------CCCCCCCCCc
Confidence            44443433  3467777777776  899999999999999999864     6799999999998      7799999999


Q ss_pred             chHHHHHHHcC---CHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCCCCCcccc-CCCCC
Q 004286           85 STPLHIAAGLG---NVSMCKCIATADPRLIGERNHENETPFFLAARHGH---KDAFLCLHYLCASVDDGYNYSR-RKNGE  157 (763)
Q Consensus        85 ~TpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~-d~~G~  157 (763)
                      +||||+|+..|   +.+++++|+++|++ ++.+|..|.||||+|++.|+   .+++++|+++|++++     .+ +..|.
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin-----~~~~~~~~  183 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN-----THNNKEKY  183 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc-----cccCcCCC
Confidence            99999999976   78999999999999 99999999999999999998   999999999999998     55 46799


Q ss_pred             hHHHHHHHc----CChHHHHHHHHHhccccccccccCCCcHHH
Q 004286          158 TILHYAISG----YYFVDLAFQIIHLYEKLVNFVNERGVSPLH  196 (763)
Q Consensus       158 TpLh~A~~~----g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh  196 (763)
                      ||||.++..    ++. +++++|++ .|++++..+..|.|+++
T Consensus       184 t~Lh~~~~~~~~~~~~-~ivk~Li~-~Ga~i~~~~~~~~~~~~  224 (489)
T PHA02798        184 DTLHCYFKYNIDRIDA-DILKLFVD-NGFIINKENKSHKKKFM  224 (489)
T ss_pred             cHHHHHHHhccccCCH-HHHHHHHH-CCCCcccCCccccchHH
Confidence            999998765    478 99999999 59999999999999987

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-32  Score=296.92  Aligned_cols=387  Identities=11%  Similarity=0.078  Sum_probs=265.9

Q ss_pred             HHHHHHHcCCHHHHH--HHHccCCCccccccCCCCChHHHHHHHcCCH-HHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           13 GLFKSAMKGKWNEVV--ENYGKDDRIHEARITRSGGTALHIAVSDGQE-EIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        13 ~L~~aa~~g~~~~v~--~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      -|+..|..-+.+.+.  .||..  |+++-. ..+|.||||.-.-..|. .=++.++..|      ..++..+.+|.+|+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~~--g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~------~~~~~~n~~~~~~~~   76 (631)
T PHA02792          6 ILYDSCKTFNIDACSAQSLIES--GANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLL------SSVDYKNINDFDIFE   76 (631)
T ss_pred             HHHhHhhccchhHHHHHHHHHc--CCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHH------hCCCcCccCCccHHH
Confidence            355556666555554  34444  887766 57788999988766653 2334555555      447788899999998


Q ss_pred             HH-HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCCC---------------------
Q 004286           90 IA-AGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR-HGHKDAFLCLHYLCASVDD---------------------  146 (763)
Q Consensus        90 ~A-a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~-~g~~~~v~~Ll~~ga~~~~---------------------  146 (763)
                      +- +..|+.|+|++|+++|++ +|.++..|.||+|+|+. .++.|++++|+++||++..                     
T Consensus        77 ~~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch
Confidence            85 567899999999999998 99999999999999966 6999999999999998531                     


Q ss_pred             ----------CCccccCCCCChHHHHHHHcC-------ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCc
Q 004286          147 ----------GYNYSRRKNGETILHYAISGY-------YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGS  209 (763)
Q Consensus       147 ----------~~~~~~d~~G~TpLh~A~~~g-------~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~  209 (763)
                                -.++..|..|.||||+|+.++       +. |+++.|++ +|++++..|.+|.||||+|+.+...     
T Consensus       156 ~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~-~v~k~Li~-~g~~~~~~d~~g~t~l~~~~~~~~i-----  228 (631)
T PHA02792        156 DDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL-DVINYLIS-HEKEMRYYTYREHTTLYYYVDKCDI-----  228 (631)
T ss_pred             hhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH-HHHHHHHh-CCCCcCccCCCCChHHHHHHHcccc-----
Confidence                      023567888999999999999       78 99999999 5999999999999999999998732     


Q ss_pred             hHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHH---------HHHHHHHHHHhCCC--CCCCC
Q 004286          210 HLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIR---------LLKTMVIVLFNRGN--TKKEP  278 (763)
Q Consensus       210 ~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---------~~~~ll~~l~~~~~--~~~~~  278 (763)
                      ..+++++|+...-+-..                       .......++.         +-..++..|++.+.  ++-..
T Consensus       229 ~~ei~~~L~~~~~~~~~-----------------------~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~  285 (631)
T PHA02792        229 KREIFDALFDSNYSGNE-----------------------LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILEL  285 (631)
T ss_pred             hHHHHHHHHhccccccc-----------------------hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhh
Confidence            46999999884221110                       0001111111         11234455555433  11100


Q ss_pred             CCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHh-hhccHH
Q 004286          279 TPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQ-KHTWSV  357 (763)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~~~~  357 (763)
                      .....                                 +.++-+...+...           ..++.+...-. ...-..
T Consensus       286 ~~~~~---------------------------------~~~~~~~~~~~~~-----------~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        286 CNSLR---------------------------------NNIIISSILKRYT-----------DSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             hhhhh---------------------------------hhhHHHHHHHHHh-----------HHHHHHHHHHHhcCCccH
Confidence            00000                                 0011111111111           12333322221 123466


Q ss_pred             HHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCC
Q 004286          358 QILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNS  437 (763)
Q Consensus       358 ~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~  437 (763)
                      +++++|++.|++... ..+.++++.|+..                      |+.+++++|+.+|+               
T Consensus       322 eiIK~LId~Ga~~~r-~~~~n~~~~Aa~~----------------------gn~eIVelLIs~GA---------------  363 (631)
T PHA02792        322 NVIKCMIDEGATLYR-FKHINKYFQKFDN----------------------RDPKVVEYILKNGN---------------  363 (631)
T ss_pred             HHHHHHHHCCCcccc-CCcchHHHHHHHc----------------------CCHHHHHHHHHcCC---------------
Confidence            899999999987532 1233345555444                      44556677776666               


Q ss_pred             ccccCCCCCCCCCCCCCC--CCcHHHHHHHcChH---HHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhc
Q 004286          438 EDRNEGGKTGSTIPDTVK--RETPILIAAKNGIT---EIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKT  512 (763)
Q Consensus       438 ~~~~~~~~~~~~~~~d~~--G~tpLh~Aa~~g~~---eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~  512 (763)
                                +.+.+|.+  |.||||.|+.....   ++++.|++ .+++++.+|..|+||||+|+..++.+++++|+++
T Consensus       364 ----------DIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~  432 (631)
T PHA02792        364 ----------VVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN  432 (631)
T ss_pred             ----------chhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence                      33345555  46999998887654   45788888 6778899999999999999999999999999999


Q ss_pred             cchhhhhhccccCCCCchhhhHhh
Q 004286          513 AIIQETVFRKVDDQGNSALHLAAT  536 (763)
Q Consensus       513 ~~~~~~~~n~~D~~G~TpLH~Aa~  536 (763)
                      |+    ++|.+|..|+||||+|+.
T Consensus       433 GA----DIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        433 GA----DINITTKYGSTCIGICVI  452 (631)
T ss_pred             CC----CCCCcCCCCCCHHHHHHH
Confidence            98    799999999999999987

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=274.14  Aligned_cols=126  Identities=19%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhc-CCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccC-CCCChHHHH
Q 004286           85 STPLHIAAGLGNVSMCKCIATA-DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR-KNGETILHY  162 (763)
Q Consensus        85 ~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d-~~G~TpLh~  162 (763)
                      .+-++.|++.|..+.|+.|++. +.+ ++..|.+|.|+|||||.+++.+++++|+++|+++|     +.+ .-|.||||+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~-v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn-----~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES-VNNPDREGVTLLHWAAINNRLDVARYLISHGADVN-----AIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC-CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcc-----ccCCCCCCCcchH
Confidence            4566777777777777777777 555 77777777777777777777777777777777777     444 556777777


Q ss_pred             HHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          163 AISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       163 A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |+++|+. .+|.+|++ +|||++.+|.+|.||||+|++.++       .-++-+|+.+|+|+|
T Consensus       119 Aar~G~~-~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~-------~~~vayll~~~~d~d  172 (600)
T KOG0509|consen  119 AARNGHI-SVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGH-------TALVAYLLSKGADID  172 (600)
T ss_pred             HHHcCcH-HHHHHHHH-cCCCCceecCCCCcHHHHHHHhCc-------hHHHHHHHHhcccCC
Confidence            7777777 77777777 477777777777777777777764       456666666554444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5.4e-31  Score=277.79  Aligned_cols=213  Identities=22%  Similarity=0.242  Sum_probs=193.9

Q ss_pred             hhhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCC-CCCc
Q 004286            7 IDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGD-ERGS   85 (763)
Q Consensus         7 ~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~   85 (763)
                      .|.....++.|+..|+.+.|+.+++.+ +.+++..|.+|.|+||+||.+++.+++++|+++|      +++|..+ .-|.
T Consensus        41 ~d~~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g------advn~~gG~l~s  113 (600)
T KOG0509|consen   41 EDSSLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHG------ADVNAIGGVLGS  113 (600)
T ss_pred             cchhhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcC------CCccccCCCCCC
Confidence            345567889999999999999999987 8889999999999999999999999999999999      6788888 6789


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      ||||||+++|+..+|++|+++|++ ++.+|.+|.||||+|++.||.-.|-+|+.+|+++|     .+|.+|+||||+|+.
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-----~~D~~grTpLmwAay  187 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-----LRDNNGRTPLMWAAY  187 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-----CcCCCCCCHHHHHHH
Confidence            999999999999999999999999 99999999999999999999999999999999999     999999999999999


Q ss_pred             cCChHHHHHHHHHhccccccccc-cCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhcccc
Q 004286          166 GYYFVDLAFQIIHLYEKLVNFVN-ERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQ  244 (763)
Q Consensus       166 ~g~~~~iv~~LL~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  244 (763)
                      +|+. ..+..||+ .++.++..| +.|.||||+|+..||       +.++.+|++.|++.+..+..              
T Consensus       188 kg~~-~~v~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN-------~~~v~Ll~~g~~~~d~~~~~--------------  244 (600)
T KOG0509|consen  188 KGFA-LFVRRLLK-FGASLLLTDDNHGNTPLHWAVVGGN-------LTAVKLLLEGGADLDKTNTN--------------  244 (600)
T ss_pred             hccc-HHHHHHHH-hcccccccccccCCchHHHHHhcCC-------cceEehhhhcCCcccccccC--------------
Confidence            9998 66899998 698999988 899999999999997       58888777888998887743              


Q ss_pred             CCCCccHHHHH
Q 004286          245 TNYPENYETCL  255 (763)
Q Consensus       245 ~~~p~~~~~~~  255 (763)
                      +.+|...+...
T Consensus       245 g~tp~~LA~~~  255 (600)
T KOG0509|consen  245 GKTPFDLAQER  255 (600)
T ss_pred             CCCHHHHHHHh
Confidence            56777766544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=265.54  Aligned_cols=326  Identities=9%  Similarity=-0.048  Sum_probs=227.1

Q ss_pred             hHHHHHHHHcCCHHH-HHHHHccCCCccccccCCCCChHHHHHH-HcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286           11 KKGLFKSAMKGKWNE-VVENYGKDDRIHEARITRSGGTALHIAV-SDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~-v~~lL~~~~~~~~~~~d~~g~TpLh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      .+||+...-+.+... +.-++.-  +..++..+-+|.+|+|+-| ..|+.|+|++|+++|      +++|.++..|.|||
T Consensus        38 ~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G------AdvN~~~n~~~~~l  109 (631)
T PHA02792         38 ETPLKAYVTKKNNNIKNDVVILL--LSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKG------LEINSIKNGINIVE  109 (631)
T ss_pred             CccHHHHHhhhhhhHHHHHHHHH--HhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcC------CCcccccCCCCcce
Confidence            477777655444222 1222222  3445567778888998755 578899999999998      67888898899999


Q ss_pred             HHHHH-cCCHHHHHHHHhcCCC-----------------------------------ccCCCCCCCChHHHHHHHcC---
Q 004286           89 HIAAG-LGNVSMCKCIATADPR-----------------------------------LIGERNHENETPFFLAARHG---  129 (763)
Q Consensus        89 h~Aa~-~g~~~~v~~Ll~~~~~-----------------------------------~~~~~~~~g~TpLh~A~~~g---  129 (763)
                      |+|+. .|+.|++++|+++|++                                   .+|..|..|.||||+|+..+   
T Consensus       110 ~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~  189 (631)
T PHA02792        110 KYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQD  189 (631)
T ss_pred             eEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcc
Confidence            99976 6999999999999975                                   14466778999999999999   


Q ss_pred             ----CHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC--ChHHHHHHHHHhcccccc------------c-----
Q 004286          130 ----HKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY--YFVDLAFQIIHLYEKLVN------------F-----  186 (763)
Q Consensus       130 ----~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g--~~~~iv~~LL~~~~~~~~------------~-----  186 (763)
                          +.|++++|+++|++++     .+|..|.||||+|+.+.  +. |++++|++..-.-..            .     
T Consensus       190 ~~~~~~~v~k~Li~~g~~~~-----~~d~~g~t~l~~~~~~~~i~~-ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~  263 (631)
T PHA02792        190 GYATSLDVINYLISHEKEMR-----YYTYREHTTLYYYVDKCDIKR-EIFDALFDSNYSGNELMNILSNYLRKQYRNKNH  263 (631)
T ss_pred             cccCCHHHHHHHHhCCCCcC-----ccCCCCChHHHHHHHcccchH-HHHHHHHhccccccchHhHHHHHHHHHhccCcc
Confidence                8999999999999999     89999999999999999  77 999999873110000            0     


Q ss_pred             -cc-------cCCCcH------------------------------HHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          187 -VN-------ERGVSP------------------------------LHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       187 -~d-------~~G~Tp------------------------------Lh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                       .|       -.|.+|                              ||.=.+++     --+.+++++|+++|++.+...
T Consensus       264 ~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~-----~v~ieiIK~LId~Ga~~~r~~  338 (631)
T PHA02792        264 KIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYH-----TVYINVIKCMIDEGATLYRFK  338 (631)
T ss_pred             CccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcC-----CccHHHHHHHHHCCCccccCC
Confidence             01       012221                              11111111     147899999999999975211


Q ss_pred             cccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccccccc
Q 004286          229 EETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGA  308 (763)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (763)
                       .                    ....          +.                                          
T Consensus       339 -~--------------------~n~~----------~~------------------------------------------  345 (631)
T PHA02792        339 -H--------------------INKY----------FQ------------------------------------------  345 (631)
T ss_pred             -c--------------------chHH----------HH------------------------------------------
Confidence             0                    0000          00                                          


Q ss_pred             CCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCcee-ccCC--CCCCCCCCC
Q 004286          309 QGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEY-DYVG--GKPLRRPSS  385 (763)
Q Consensus       309 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~-d~~G--~tpL~~a~~  385 (763)
                                                                .......++++.|+++|++.+. |.+|  .||||.|..
T Consensus       346 ------------------------------------------Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        346 ------------------------------------------KFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             ------------------------------------------HHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHH
Confidence                                                      0111233899999999997765 5554  688887654


Q ss_pred             CcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHH
Q 004286          386 QVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAK  465 (763)
Q Consensus       386 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~  465 (763)
                      ....+  .                 ..++++|+.+|+                         +.+.+|..|.||||+|+.
T Consensus       384 n~~~~--v-----------------~~IlklLIs~GA-------------------------DIN~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        384 IHESD--V-----------------LSILKLCKPYID-------------------------DINKIDKHGRSILYYCIE  419 (631)
T ss_pred             hccHh--H-----------------HHHHHHHHhcCC-------------------------ccccccccCcchHHHHHH
Confidence            32211  0                 011222222222                         445678899999999999


Q ss_pred             cChHHHHHHHHHhCCccccccccCCCchhHHHHH---cC-------ChHHHHHHHhccch
Q 004286          466 NGITEIVEKILKSFPVAILDMNSEKKNVMLLAVE---NR-------QRHVYQLLLKTAII  515 (763)
Q Consensus       466 ~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~---~~-------~~~iv~~Ll~~~~~  515 (763)
                      .|+.+++++|++ .+++++.+|..|+||||+|+.   .+       ..+++++|+++++.
T Consensus       420 ~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        420 SHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999 577889999999999999986   22       24568888888763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=234.27  Aligned_cols=174  Identities=12%  Similarity=0.033  Sum_probs=156.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcC--CHHHHHHHHHHhhhhccccccccCC-CCCch
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG--QEEIVEDLVRIIHEKQQLKVLKIGD-ERGST   86 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~T   86 (763)
                      ..+||+.|+..|+.+.|+.++..     .+..|..|.||||+|+..+  +.+++++|+++|      ++++.++ ..|.|
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g------advn~~~~~~g~T   89 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENG------ADVNFKTRDNNLS   89 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCC------CCCCccCCCCCCC
Confidence            47899999999999999998864     3567889999999999855  899999999998      6788887 58999


Q ss_pred             HHHHHHHc---CCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCCccccCCCCChHHH
Q 004286           87 PLHIAAGL---GNVSMCKCIATADPRLIGERNHENETPFFLAAR--HGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH  161 (763)
Q Consensus        87 pLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh  161 (763)
                      |||+|+..   ++.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++++|+++|++++     .+|.+|.||||
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-----~~d~~g~t~Lh  163 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-----NKDFDNNNILY  163 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-----cccCCCCcHHH
Confidence            99998864   479999999999999 99999999999999986  468999999999999999     89999999999


Q ss_pred             H-HHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          162 Y-AISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       162 ~-A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      . |+..++. +++++|++ .|++++.+|..|.||||+|..++
T Consensus       164 ~~a~~~~~~-~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        164 SYILFHSDK-KIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHhcCCH-HHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            5 5678888 99999999 59999999999999999999874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.7e-27  Score=246.60  Aligned_cols=208  Identities=17%  Similarity=0.067  Sum_probs=175.8

Q ss_pred             CCCChhhhhHHHHHHHHcCCHHHHHHHHccCCCcccc------ccCCCCChHHHHHHH--cCCHHHHHHHHHHhhhhccc
Q 004286            3 TGIDIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEA------RITRSGGTALHIAVS--DGQEEIVEDLVRIIHEKQQL   74 (763)
Q Consensus         3 ~~~d~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~------~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~   74 (763)
                      .|+++++.-..= .||..+..+.+..++..  +++++      ..+..++|+||+|+.  .|+.++|++|+++|      
T Consensus        71 ~~~~i~~~~~~~-~~~~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G------  141 (437)
T PHA02795         71 HRDNIDQYIVDR-LFAYITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG------  141 (437)
T ss_pred             cCcchhhhhhhh-HHhhcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCC------
Confidence            456665431111 56666666666655555  88877      778899999999999  89999999999999      


Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC-----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCc
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN-----HENETPFFLAARHGHKDAFLCLHYLCASVDDGYN  149 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-----~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~  149 (763)
                      ++++..  ++.||||+|+..|+.+++++|+++|++..+..+     ..|.||+|.|+..++.+++++|+++|++++    
T Consensus       142 ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN----  215 (437)
T PHA02795        142 AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN----  215 (437)
T ss_pred             CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC----
Confidence            556653  458999999999999999999999986444432     348899999999999999999999999999    


Q ss_pred             cccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC-ccCCchHHHHHHHHHcCCCCCccc
Q 004286          150 YSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA-FRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       150 ~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~-~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                       .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||||+|+..|+. +.++.+.+++++|+++|++++...
T Consensus       216 -~kD~~G~TpLh~Aa~~g~~-eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        216 -QLDAGGRTLLYRAIYAGYI-DLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             -cCCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence             8999999999999999999 99999999 5999999999999999999999864 455667899999999999998755

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=2e-25  Score=262.95  Aligned_cols=184  Identities=19%  Similarity=0.120  Sum_probs=148.8

Q ss_pred             hhhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHH-HHHHcCCHHHHHHHHHHhhhhccccccccCCCCCc
Q 004286            7 IDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALH-IAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGS   85 (763)
Q Consensus         7 ~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~   85 (763)
                      ....++.++.||..|+.+.++.++.+.++.++|..|..|+|||| .|+..++.+++++|+++|      +    .+..|.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g------~----~~~~G~   83 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLS------C----RGAVGD   83 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCC------C----CCCcCh
Confidence            34568899999999999999999988667889999999999999 888999999999999986      2    678899


Q ss_pred             hHHHHHHHcC---CHHHHHHHHhcCCC-----ccC----CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCcc---
Q 004286           86 TPLHIAAGLG---NVSMCKCIATADPR-----LIG----ERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNY---  150 (763)
Q Consensus        86 TpLh~Aa~~g---~~~~v~~Ll~~~~~-----~~~----~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~---  150 (763)
                      ||||.|+..+   ...+++.+...+..     .++    ..+..|.||||+||..|+.++|++|+++|++++.....   
T Consensus        84 T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~  163 (743)
T TIGR00870        84 TLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFF  163 (743)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh
Confidence            9999998732   22334444444322     011    12356999999999999999999999999999821100   


Q ss_pred             ------ccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          151 ------SRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       151 ------~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                            .....|+||||.|+..|+. +++++|++ +|+|++.+|..|+||||+|+..+
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~~~-~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLGSP-SIVALLSE-DPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhCCH-HHHHHHhc-CCcchhhHhhhhhHHHHHHHhhh
Confidence                  0123699999999999999 99999998 59999999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=228.28  Aligned_cols=178  Identities=11%  Similarity=0.046  Sum_probs=156.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCccCCCC-CCC
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG--NVSMCKCIATADPRLIGERN-HEN  118 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~-~~g  118 (763)
                      ...++||||+|+..|+.++|+.|++.         ++..|..|.||||+|+..+  +.+++++|+++|++ ++.++ ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCCCCC
Confidence            45789999999999999999999975         4567899999999999854  89999999999999 89887 489


Q ss_pred             ChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH--cCChHHHHHHHHHhccccccccccCCCc
Q 004286          119 ETPFFLAARH---GHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS--GYYFVDLAFQIIHLYEKLVNFVNERGVS  193 (763)
Q Consensus       119 ~TpLh~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~--~g~~~~iv~~LL~~~~~~~~~~d~~G~T  193 (763)
                      .||||+|+..   ++.+++++|+++|++++     .+|..|.||||+|+.  .++. +++++|++ .|++++.+|.+|.|
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-----~~d~~G~TpLh~a~~~~~~~~-~iv~~Li~-~gadin~~d~~g~t  160 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSSIT-----EEDEDGKNLLHMYMCNFNVRI-NVIKLLID-SGVSFLNKDFDNNN  160 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCCCC-----CcCCCCCCHHHHHHHhccCCH-HHHHHHHH-cCCCcccccCCCCc
Confidence            9999998864   57999999999999999     899999999999986  4678 99999998 59999999999999


Q ss_pred             HHHHH-hcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHH
Q 004286          194 PLHLL-ATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNF  257 (763)
Q Consensus       194 pLh~A-~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  257 (763)
                      |||.+ +..+       +.+++++|+++|++++..+.              .+.+|++++...+.
T Consensus       161 ~Lh~~a~~~~-------~~~iv~~Ll~~Gadi~~~d~--------------~g~tpl~la~~~~~  204 (209)
T PHA02859        161 ILYSYILFHS-------DKKIFDFLTSLGIDINETNK--------------SGYNCYDLIKFRNL  204 (209)
T ss_pred             HHHHHHHhcC-------CHHHHHHHHHcCCCCCCCCC--------------CCCCHHHHHhhhhh
Confidence            99964 4454       47999999999999998774              47899998866543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=242.35  Aligned_cols=183  Identities=9%  Similarity=-0.039  Sum_probs=153.7

Q ss_pred             cCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccc------cCCCCCchHHHHHHH
Q 004286           20 KGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLK------IGDERGSTPLHIAAG   93 (763)
Q Consensus        20 ~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~------~~d~~g~TpLh~Aa~   93 (763)
                      +.-.+.+-+++..+ |++++..+.+|     +|+..+..|++++|+.+|      ++++      .++..++|+||+|+.
T Consensus        58 ~~~~~~~~~~~~~~-~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~------~~~~~~~~~~~~~~~~~~~L~~~~~  125 (437)
T PHA02795         58 CDPVDVLYDYFRIH-RDNIDQYIVDR-----LFAYITYKDIISALVSKN------YMEDIFSIIIKNCNSVQDLLLYYLS  125 (437)
T ss_pred             CCHHHHHHHHHHHc-Ccchhhhhhhh-----HHhhcchHHHHHHHHhcc------cccchhhhhhhccccccHHHHHHHH
Confidence            33444555555554 77888777777     999999999999999998      5555      688889999999999


Q ss_pred             --cCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CCccccCCCCChHHHHHHHcCChH
Q 004286           94 --LGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDD-GYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        94 --~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                        .|+.++|++|+++|++ ++..  ++.||||.|+..|+.+++++|+++|++.+. .+....+..|.|++|.|...++. 
T Consensus       126 n~~n~~eiV~~LI~~GAD-In~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~-  201 (437)
T PHA02795        126 NAYVEIDIVDFMVDHGAV-IYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVL-  201 (437)
T ss_pred             hcCCCHHHHHHHHHCCCC-CCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHH-
Confidence              8999999999999999 7774  458999999999999999999999985431 11112234588999999999999 


Q ss_pred             HHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          171 DLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       171 ~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      |++++|++ +|+++|.+|..|.||||+|+..|+       .+++++|+++|++++.
T Consensus       202 eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~-------~eiVelLL~~GAdIN~  249 (437)
T PHA02795        202 EIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGY-------IDLVSWLLENGANVNA  249 (437)
T ss_pred             HHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCCC
Confidence            99999999 699999999999999999999985       6999999999988874

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=9.4e-27  Score=253.67  Aligned_cols=319  Identities=22%  Similarity=0.225  Sum_probs=265.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      .+-.|+|-.||..||.|.|++|+.+|      +++..+|..|.+||-+|+..||..+|+.|+.+.+++--..|+.++|+|
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rg------aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRG------ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhc------ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            55689999999999999999999998      779999999999999999999999999999999984445688999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccc--cCCCcHHHHHhc
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVN--ERGVSPLHLLAT  200 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d--~~G~TpLh~A~~  200 (763)
                      -+||..|+.++|++||.+|++-.     .++-...|||-+|...|+. +++..||. .|+.+|.+.  +.|.+||++|..
T Consensus       829 Slacsggr~~vvelLl~~ganke-----hrnvsDytPlsla~Sggy~-~iI~~llS-~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKE-----HRNVSDYTPLSLARSGGYT-KIIHALLS-SGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhcccc-----ccchhhcCchhhhcCcchH-HHHHHHhh-cccccccccccccCcchhhhhhh
Confidence            99999999999999999999888     8899999999999999999 99999999 598888764  569999999999


Q ss_pred             CCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 004286          201 KPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTP  280 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~  280 (763)
                      +|+       -..++.|++.|-|+|+..+.                                                  
T Consensus       902 ngh-------~~at~~ll~~gsdiNaqIeT--------------------------------------------------  924 (2131)
T KOG4369|consen  902 NGH-------QAATLSLLQPGSDINAQIET--------------------------------------------------  924 (2131)
T ss_pred             ccc-------cHHHHHHhcccchhcccccc--------------------------------------------------
Confidence            995       59999999999999976532                                                  


Q ss_pred             CCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHH
Q 004286          281 RDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQIL  360 (763)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv  360 (763)
                                                          |..+.+.++.+          .|+.                +++
T Consensus       925 ------------------------------------NrnTaltla~f----------qgr~----------------evv  942 (2131)
T KOG4369|consen  925 ------------------------------------NRNTALTLALF----------QGRP----------------EVV  942 (2131)
T ss_pred             ------------------------------------ccccceeeccc----------cCcc----------------hHH
Confidence                                                11111211111          1222                788


Q ss_pred             HHHHhccCCce-eccCCCCCCCCCCCCcccccCcccccc-cCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCc
Q 004286          361 DELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAIV-DGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSE  438 (763)
Q Consensus       361 ~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  438 (763)
                      .+||...+... .-..|-|||+-++..|+.+  +.+.++ .|+|+++.                                
T Consensus       943 ~lLLa~~anvehRaktgltplme~AsgGyvd--vg~~li~~gad~nas--------------------------------  988 (2131)
T KOG4369|consen  943 FLLLAAQANVEHRAKTGLTPLMEMASGGYVD--VGNLLIAAGADTNAS--------------------------------  988 (2131)
T ss_pred             HHHHHHhhhhhhhcccCCcccchhhcCCccc--cchhhhhcccccccC--------------------------------
Confidence            88888877544 4667999999998887655  333333 44433221                                


Q ss_pred             cccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhh
Q 004286          439 DRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQET  518 (763)
Q Consensus       439 ~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~  518 (763)
                                  -.-....|+|-+++..||...|+.||. +.+.+..++.+|.|+|-+|+..|+...+.+|+++.+    
T Consensus       989 ------------Pvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a---- 1051 (2131)
T KOG4369|consen  989 ------------PVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA---- 1051 (2131)
T ss_pred             ------------CCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhccCCccccchHHhhccc----
Confidence                        012246789999999999999999998 666788899999999999999999999999999998    


Q ss_pred             hhccccCCCCchhhhHhhcCCCCCcC
Q 004286          519 VFRKVDDQGNSALHLAATLGDHKPWL  544 (763)
Q Consensus       519 ~~n~~D~~G~TpLH~Aa~~g~~~~~~  544 (763)
                      +.+.+|+.-+|++.-|.+.|++++++
T Consensus      1052 d~d~qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1052 DADQQDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred             ChhhhhcccccccHHHHHhchhheec
Confidence            68899999999999999999988765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.5e-26  Score=211.05  Aligned_cols=185  Identities=19%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             HHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCC
Q 004286           17 SAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGN   96 (763)
Q Consensus        17 aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~   96 (763)
                      +...|+.+.+...+.-++.+.++ .+.+|+.++|.|+-.|+.+.+..+|.+|      +..|..+..+++|+.+++...+
T Consensus        69 ~~~s~nsd~~v~s~~~~~~~~~~-t~p~g~~~~~v~ap~~s~~k~sttltN~------~rgnevs~~p~s~~slsVhql~  141 (296)
T KOG0502|consen   69 AVRSGNSDVAVQSAQLDPDAIDE-TDPEGWSALLVAAPCGSVDKVSTTLTNG------ARGNEVSLMPWSPLSLSVHQLH  141 (296)
T ss_pred             hhhcCCcHHHHHhhccCCCCCCC-CCchhhhhhhhcCCCCCcceeeeeeccc------ccCCccccccCChhhHHHHHHH
Confidence            33444544444444433333322 3455666666666666666666666655      3345555566666666666665


Q ss_pred             HHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHH
Q 004286           97 VSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQI  176 (763)
Q Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~L  176 (763)
                      .+.+..+.++   .+|..|..|.|||.||+.+||.++|++|++.|++++     ...+...|+|.+|++.|.. ++|++|
T Consensus       142 L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-----~lgk~resALsLAt~ggyt-diV~lL  212 (296)
T KOG0502|consen  142 LDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-----ALGKYRESALSLATRGGYT-DIVELL  212 (296)
T ss_pred             HHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-----hhhhhhhhhHhHHhcCChH-HHHHHH
Confidence            5555555443   255666666666666666666666666666666665     5556666666666666666 666666


Q ss_pred             HHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          177 IHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       177 L~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |.+ +.|+|..|-+|-|||-+|++.+       |.++++.|+..||+++
T Consensus       213 L~r-~vdVNvyDwNGgTpLlyAvrgn-------hvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  213 LTR-EVDVNVYDWNGGTPLLYAVRGN-------HVKCVESLLNSGADVT  253 (296)
T ss_pred             Hhc-CCCcceeccCCCceeeeeecCC-------hHHHHHHHHhcCCCcc
Confidence            664 5566666666666666666554       4566666666665554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=4.7e-25  Score=235.09  Aligned_cols=227  Identities=20%  Similarity=0.208  Sum_probs=182.1

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK  154 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~  154 (763)
                      ...|.+|.+|.|+||.|+.+|+.+++++|+++.+- ++..+.+|.+|||+|+..|+.+++++|+.++..+|     ..+.
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-----a~~~  113 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-----AVNI  113 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-----cccc
Confidence            44677788888888888888888888888888876 77788888888888888888888888888887777     7888


Q ss_pred             CCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccc
Q 004286          155 NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYD  234 (763)
Q Consensus       155 ~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  234 (763)
                      .|.||||.|+++||. |++.+||. +++|+-.+|+++.|+|.+|++.|.       .++++.|++....+-         
T Consensus       114 e~~tplhlaaqhgh~-dvv~~Ll~-~~adp~i~nns~~t~ldlA~qfgr-------~~Vvq~ll~~~~~~~---------  175 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHL-EVVFYLLK-KNADPFIRNNSKETVLDLASRFGR-------AEVVQMLLQKKFPVQ---------  175 (854)
T ss_pred             cCcCccchhhhhcch-HHHHHHHh-cCCCccccCcccccHHHHHHHhhh-------hHHHHHHhhhccchh---------
Confidence            888888888888888 88888888 588888888888888888888884       577777766510000         


Q ss_pred             cchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCC
Q 004286          235 QHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFF  314 (763)
Q Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (763)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (854)
T KOG0507|consen  176 --------------------------------------------------------------------------------  175 (854)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcc
Q 004286          315 PPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIP  394 (763)
Q Consensus       315 p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~  394 (763)
                                                                     .+...         |                  
T Consensus       176 -----------------------------------------------~~~~~---------~------------------  181 (854)
T KOG0507|consen  176 -----------------------------------------------SSLRV---------G------------------  181 (854)
T ss_pred             -----------------------------------------------hcccC---------C------------------
Confidence                                                           00000         0                  


Q ss_pred             cccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHH
Q 004286          395 YAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEK  474 (763)
Q Consensus       395 ~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~  474 (763)
                                                                            ...++-.+-+|||.|+++|+.++++.
T Consensus       182 ------------------------------------------------------~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  182 ------------------------------------------------------DIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             ------------------------------------------------------CCCCCCCCcCCcchhhhcchHHHHHH
Confidence                                                                  00123368899999999999999999


Q ss_pred             HHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          475 ILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       475 LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      |++ .+.+++.... .-|+||.|+..|..++|.+|++.+.    ....+|..|.|+|.+-...-.
T Consensus       208 ll~-ag~din~~t~-~gtalheaalcgk~evvr~ll~~gi----n~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  208 LLE-AGFDINYTTE-DGTALHEAALCGKAEVVRFLLEIGI----NTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             HHh-cCCCcccccc-cchhhhhHhhcCcchhhhHHHhhcc----ccccccccchHHHHHHHhcch
Confidence            999 6888887666 4599999999999999999999997    688999999999998877654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-24  Score=231.06  Aligned_cols=196  Identities=26%  Similarity=0.282  Sum_probs=174.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCC-----------ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDR-----------IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI   79 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~-----------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~   79 (763)
                      .+.+..|+..|+.+.+..+|....+           ...+..|.+|.|+||.||.+|+.+++++|+++-      +.++.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e------a~ldl   77 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE------ALLDL   77 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch------hhhhh
Confidence            5678999999999999999985422           346667889999999999999999999999975      77999


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChH
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI  159 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~Tp  159 (763)
                      .|..|.+|||+|+..|+.+++++|+.++.. +|..+..|.||||.|+++||.+++.+|+.+|+++-     .+|..+.|+
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-----i~nns~~t~  151 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-----IRNNSKETV  151 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-----ccCcccccH
Confidence            999999999999999999999999999955 99999999999999999999999999999999998     899999999


Q ss_pred             HHHHHHcCChHHHHHHHHHhcccc--------ccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCcc
Q 004286          160 LHYAISGYYFVDLAFQIIHLYEKL--------VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKL  227 (763)
Q Consensus       160 Lh~A~~~g~~~~iv~~LL~~~~~~--------~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~  227 (763)
                      |-.|++.|.. ++++.|+.. .-.        -..++-.+-+|||.|+++|       |.++++.|++.|.++|..
T Consensus       152 ldlA~qfgr~-~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakng-------h~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  152 LDLASRFGRA-EVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNG-------HVECMQALLEAGFDINYT  218 (854)
T ss_pred             HHHHHHhhhh-HHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcc-------hHHHHHHHHhcCCCcccc
Confidence            9999999999 999999985 221        1234567889999999998       579999999999888753

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=1.3e-24  Score=190.21  Aligned_cols=109  Identities=35%  Similarity=0.579  Sum_probs=98.0

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHhhhccccCCCCCCCC---CCCccccCCc-ccchhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 004286          597 GQWLTQTSEACTVMAALIATVAFTSSSNVPGGVNGE---TGDPNLKDQL-AFNVFAFSSLVALSFSMTALVVFFAIKTSR  672 (763)
Q Consensus       597 ~~~~~~~~~~~~vva~Liatvtfaa~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~  672 (763)
                      +||+++++++++|||+|||||||||+||||||++|+   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999875   5999999887 999999999999999999999877322   


Q ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 004286          673 FQEQDFRKDLPEKLLLGLTSLFVSIASMMISFWAGHFLV  711 (763)
Q Consensus       673 ~~~~~~~~~l~~~~~~~~~~l~~s~~~m~~af~~~~~~~  711 (763)
                         .++.+.+++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               445566677889999999999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1e-24  Score=199.09  Aligned_cols=74  Identities=22%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhh
Q 004286          453 TVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALH  532 (763)
Q Consensus       453 d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH  532 (763)
                      |-+|.|||.+|++.|+.++|+.||+ .+++++..|..|.+++-.|+..|+. +|+..+++..    +.+.+|+.-+||||
T Consensus       223 DwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~----lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  223 DWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA----LKLCQDSEKRTPLH  296 (296)
T ss_pred             ccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH----HHHhhcccCCCCCC
Confidence            4468888888888888888888888 5666677788888888888888887 8888887766    57778888888876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.7e-23  Score=247.72  Aligned_cols=174  Identities=23%  Similarity=0.199  Sum_probs=161.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ...+|+.||..|+.+.++.++..  |++++..|..|+||||+||..|+.+++++|+++|      ++++.+|.+|+||||
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g------adin~~d~~G~TpL~  596 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA------CNVHIRDANGNTALW  596 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC------CCCCCcCCCCCCHHH
Confidence            46889999999999999999987  8999999999999999999999999999999998      779999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|++.++. .+  ...|.+|||.|+..|+.+++++|+++|++++     .+|.+|+||||+|+..|+.
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-----~~d~~G~TpLh~A~~~g~~  668 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-----SEDHQGATALQVAMAEDHV  668 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHCCcH
Confidence            99999999999999987765 33  3457899999999999999999999999999     8999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccCC-CcHHHHHhcC
Q 004286          170 VDLAFQIIHLYEKLVNFVNERG-VSPLHLLATK  201 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~G-~TpLh~A~~~  201 (763)
                       +++++|++ .|++++..|..| .||++.+...
T Consensus       669 -~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        669 -DMVRLLIM-NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             -HHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHH
Confidence             99999999 599999999998 9999887553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=4.3e-22  Score=234.72  Aligned_cols=88  Identities=25%  Similarity=0.269  Sum_probs=72.1

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcC---------ChHHHHHHHhccch---hhhhhcc
Q 004286          455 KRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENR---------QRHVYQLLLKTAII---QETVFRK  522 (763)
Q Consensus       455 ~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~---------~~~iv~~Ll~~~~~---~~~~~n~  522 (763)
                      .|.||||.|+..|+.+++++|++ .|++++.+|..|+||||+|+..+         ...+.+++++.++.   .....+.
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i  252 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI  252 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhh
Confidence            59999999999999999999999 67788999999999999999987         23455666655432   1223377


Q ss_pred             ccCCCCchhhhHhhcCCCCCc
Q 004286          523 VDDQGNSALHLAATLGDHKPW  543 (763)
Q Consensus       523 ~D~~G~TpLH~Aa~~g~~~~~  543 (763)
                      +|++|.||||+|++.|+.+++
T Consensus       253 ~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       253 LNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             cCCCCCCchhhhhhcCCccHH
Confidence            899999999999999986653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=4.7e-23  Score=243.93  Aligned_cols=167  Identities=20%  Similarity=0.260  Sum_probs=155.2

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        41 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      .+..+.++||.||..|+.++++.|++.|      +++|.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G------~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~T  593 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAK------LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNT  593 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCC
Confidence            4556789999999999999999999988      67899999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |||+|+..||.+++++|++.++..+       ...|.++||.|+.+|+. ++++.|++ .|+++|.+|.+|.||||+|+.
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~~~~~-------~~~~~~~L~~Aa~~g~~-~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFASISD-------PHAAGDLLCTAAKRNDL-TAMKELLK-QGLNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcCcccC-------cccCchHHHHHHHhCCH-HHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999998887554       35678999999999999 99999999 599999999999999999999


Q ss_pred             CCCCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          201 KPNAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                      .|+       .+++++|+++|++++..+..
T Consensus       665 ~g~-------~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        665 EDH-------VDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             CCc-------HHHHHHHHHcCCCCCCCCCC
Confidence            985       79999999999999988754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=6.4e-24  Score=231.79  Aligned_cols=322  Identities=15%  Similarity=0.119  Sum_probs=257.9

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-CCCCCchH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI-GDERGSTP   87 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~d~~g~Tp   87 (763)
                      .++++|-.||..|+.+++..++.+  |+++..+|+.|.+||.+|+..||..+|+.|+.+-+      +++. .|..+.|+
T Consensus       756 n~~t~LT~acaggh~e~vellv~r--ganiehrdkkgf~plImaatagh~tvV~~llk~ha------~veaQsdrtkdt~  827 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVR--GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHA------DVEAQSDRTKDTM  827 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHh--cccccccccccchhhhhhcccCchHHHHHHHhhhh------hhhhhcccccCce
Confidence            357889999999999999988888  89999999999999999999999999999999864      4444 47889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      |-+||..|+.++|++||..|++ -..+|....|||.+|...|..++++.|+.+|+.+|..   .-.+.|-.||++|..+|
T Consensus       828 lSlacsggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr---tgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR---TGSKLGISPLMLATMNG  903 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcccccccc---cccccCcchhhhhhhcc
Confidence            9999999999999999999998 6788999999999999999999999999999988821   33467899999999999


Q ss_pred             ChHHHHHHHHHhcccccccc-ccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCC
Q 004286          168 YFVDLAFQIIHLYEKLVNFV-NERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTN  246 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~~-d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  246 (763)
                      |. +.++.||+. |.|+|.. .-+-+|+|-+|+-.|.       .+++.+|+...+++..+-              +.+.
T Consensus       904 h~-~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr-------~evv~lLLa~~anvehRa--------------ktgl  960 (2131)
T KOG4369|consen  904 HQ-AATLSLLQP-GSDINAQIETNRNTALTLALFQGR-------PEVVFLLLAAQANVEHRA--------------KTGL  960 (2131)
T ss_pred             cc-HHHHHHhcc-cchhccccccccccceeeccccCc-------chHHHHHHHHhhhhhhhc--------------ccCC
Confidence            99 999999994 8888874 4567899999999985       599999999988887544              3445


Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHh
Q 004286          247 YPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVK  326 (763)
Q Consensus       247 ~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~  326 (763)
                      +|+.-....++                                                                     
T Consensus       961 tplme~AsgGy---------------------------------------------------------------------  971 (2131)
T KOG4369|consen  961 TPLMEMASGGY---------------------------------------------------------------------  971 (2131)
T ss_pred             cccchhhcCCc---------------------------------------------------------------------
Confidence            55532211111                                                                     


Q ss_pred             hccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceec---cCCCCCCCCCCCCcccccCcccccccCCCC
Q 004286          327 LVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYD---YVGGKPLRRPSSQVEEDETIPYAIVDGGDT  403 (763)
Q Consensus       327 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d---~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~  403 (763)
                                                    +++=+.|+..|++.+..   ..-.|.|.+++..                 
T Consensus       972 ------------------------------vdvg~~li~~gad~nasPvp~T~dtalti~a~k----------------- 1004 (2131)
T KOG4369|consen  972 ------------------------------VDVGNLLIAAGADTNASPVPNTWDTALTIPANK----------------- 1004 (2131)
T ss_pred             ------------------------------cccchhhhhcccccccCCCCCcCCccceeecCC-----------------
Confidence                                          14455667777765541   1223445555444                 


Q ss_pred             CCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccc
Q 004286          404 DADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAI  483 (763)
Q Consensus       404 ~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~  483 (763)
                           |+...+..|+...+                         .+..++++|+|+|-+||..|++..+..|++ ..+++
T Consensus      1005 -----Gh~kfv~~lln~~a-------------------------tv~v~NkkG~T~Lwla~~Gg~lss~~il~~-~~ad~ 1053 (2131)
T KOG4369|consen 1005 -----GHTKFVPKLLNGDA-------------------------TVRVPNKKGCTVLWLASAGGALSSCPILVS-SVADA 1053 (2131)
T ss_pred             -----CchhhhHHhhCCcc-------------------------ceecccCCCCcccchhccCCccccchHHhh-cccCh
Confidence                 44445555444333                         233478899999999999999999999999 56677


Q ss_pred             cccccCCCchhHHHHHcCChHHHHHHHhc
Q 004286          484 LDMNSEKKNVMLLAVENRQRHVYQLLLKT  512 (763)
Q Consensus       484 ~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~  512 (763)
                      +..|+...++++-|.+.|+.+||++....
T Consensus      1054 d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1054 DQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             hhhhcccccccHHHHHhchhheeccccCc
Confidence            88999999999999999999999988754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=4.1e-23  Score=202.39  Aligned_cols=179  Identities=17%  Similarity=0.171  Sum_probs=156.0

Q ss_pred             CCHHHHHHHHccCCC-------ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHH
Q 004286           21 GKWNEVVENYGKDDR-------IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAG   93 (763)
Q Consensus        21 g~~~~v~~lL~~~~~-------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~   93 (763)
                      -+.+.|.++|.....       ..+|..|.+|+|+||||+.+++.++|+.||+.|.     ++++.+|.-|.||+++|+.
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv-----C~VD~qNrAGYtpiMLaAL  311 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGV-----CDVDQQNRAGYTPVMLAAL  311 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCc-----ccccccccccccHHHHHHH
Confidence            355666666643321       4577889999999999999999999999999985     8899999999999999985


Q ss_pred             c-----CCHHHHHHHHhcCCCccCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           94 L-----GNVSMCKCIATADPRLIGERN-HENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        94 ~-----g~~~~v~~Ll~~~~~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      .     .+.++|..|.+.|.  +|.+- ..|+|+|++|+.+|+.++|+.||..|+|+|     .+|.+|-|+|++||++|
T Consensus       312 A~lk~~~d~~vV~~LF~mgn--VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-----iQDdDGSTALMCA~EHG  384 (452)
T KOG0514|consen  312 AKLKQPADRTVVERLFKMGD--VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN-----IQDDDGSTALMCAAEHG  384 (452)
T ss_pred             HhhcchhhHHHHHHHHhccC--cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-----cccCCccHHHhhhhhhC
Confidence            3     46789999998764  66654 479999999999999999999999999999     99999999999999999


Q ss_pred             ChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHH
Q 004286          168 YFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIY  219 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~  219 (763)
                      |. |++++||...++|+...|.+|.|+|.+|...|.       -+|.-+|..
T Consensus       385 hk-EivklLLA~p~cd~sLtD~DgSTAl~IAleagh-------~eIa~mlYa  428 (452)
T KOG0514|consen  385 HK-EIVKLLLAVPSCDISLTDVDGSTALSIALEAGH-------REIAVMLYA  428 (452)
T ss_pred             hH-HHHHHHhccCcccceeecCCCchhhhhHHhcCc-------hHHHHHHHH
Confidence            99 999999999999999999999999999999995       476665543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=7.5e-22  Score=187.00  Aligned_cols=145  Identities=14%  Similarity=0.074  Sum_probs=129.4

Q ss_pred             CccccccCCCCChHHHHHHHcCCH----HHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHH---HHHHHhcC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQE----EIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM---CKCIATAD  107 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~---v~~Ll~~~  107 (763)
                      +++++..+.++.++||.||+.|+.    +++++|++.|      ++++.+|..|+||||+|+..|+.+.   +++|++.|
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g------~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G   83 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG------HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG   83 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc------hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence            567777888999999999999998    5666777776      5688899999999999999988654   89999999


Q ss_pred             CCccCCCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccc
Q 004286          108 PRLIGERN-HENETPFFLAARHGHKDAFLCLHY-LCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN  185 (763)
Q Consensus       108 ~~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~  185 (763)
                      ++ ++.++ ..|.||||+|+..|+.+++++|++ .|++++     .+|..|.||||+|+..++. +++++|++ +|++++
T Consensus        84 ad-in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-----~~d~~g~tpL~~A~~~~~~-~iv~~Ll~-~ga~~~  155 (166)
T PHA02743         84 AD-INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-----AINYQHETAYHIAYKMRDR-RMMEILRA-NGAVCD  155 (166)
T ss_pred             CC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-----CcCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCC
Confidence            98 89998 589999999999999999999995 799998     8999999999999999999 99999999 599999


Q ss_pred             ccccCCCc
Q 004286          186 FVNERGVS  193 (763)
Q Consensus       186 ~~d~~G~T  193 (763)
                      .++..|.+
T Consensus       156 ~~~~~~~~  163 (166)
T PHA02743        156 DPLSIGLS  163 (166)
T ss_pred             CcccCCcc
Confidence            99888753

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=2.7e-22  Score=207.51  Aligned_cols=206  Identities=24%  Similarity=0.273  Sum_probs=176.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      -.++.|+..|+.+++..+|..  ++.++..+.+|.|+||-+|...+.+||++|+++|      +++|..|..||||||.|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~g------a~Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVENG------ANVNAQDNEGWTPLHAA  113 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHHhc------CCccccccccCCcchhh
Confidence            357788999999999999998  7888999999999999999999999999999998      78999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCH--------------------------HHHHHHHHcCCCCC
Q 004286           92 AGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHK--------------------------DAFLCLHYLCASVD  145 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~--------------------------~~v~~Ll~~ga~~~  145 (763)
                      +..||..++++|+.+|++ +...|.+|..|+-+|...-..                          +=++..+..|...+
T Consensus       114 ascg~~~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d  192 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD  192 (527)
T ss_pred             cccccHHHHHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence            999999999999999998 667777877775544321111                          11344455788777


Q ss_pred             CCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          146 DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       146 ~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                           ..+..|.|.||.|+.+|.. ++.++|++ .|.+++.+|.+|+||||.|+.-|       +.+++++|+++|++.+
T Consensus       193 -----~~~~rG~T~lHvAaa~Gy~-e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg-------~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  193 -----ARHARGATALHVAAANGYT-EVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWG-------QEDACELLVEHGADMD  258 (527)
T ss_pred             -----ccccccchHHHHHHhhhHH-HHHHHHHH-hccCcccccccCCCcccHHHHhh-------hHhHHHHHHHhhcccc
Confidence                 7777799999999999999 99999999 59999999999999999999998       4699999999999999


Q ss_pred             ccccccccccchhhhccccCCCCccHHHH
Q 004286          226 KLQEETSYDQHLFTTIKKQTNYPENYETC  254 (763)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  254 (763)
                      ...              +.+.+|+.++..
T Consensus       259 ~~t--------------~~g~~p~dv~de  273 (527)
T KOG0505|consen  259 AKT--------------KMGETPLDVADE  273 (527)
T ss_pred             hhh--------------hcCCCCccchhh
Confidence            877              345677766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9e-22  Score=186.44  Aligned_cols=144  Identities=15%  Similarity=0.105  Sum_probs=129.6

Q ss_pred             cccccccCCCCCchHHHHHHHcCCH----HHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHH---HHHHHHcCCCCC
Q 004286           73 QLKVLKIGDERGSTPLHIAAGLGNV----SMCKCIATADPRLIGERNHENETPFFLAARHGHKDA---FLCLHYLCASVD  145 (763)
Q Consensus        73 ~~~~~~~~d~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~---v~~Ll~~ga~~~  145 (763)
                      ++.+++..+.++.++||.||+.|+.    +++++|++.++. ++.+|..|+||||+|+..|+.+.   +++|+++|++++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            3467778888999999999999998    667788888887 89999999999999999998654   899999999998


Q ss_pred             CCCccccC-CCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCC
Q 004286          146 DGYNYSRR-KNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISV  224 (763)
Q Consensus       146 ~~~~~~~d-~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~  224 (763)
                           .+| ..|.||||+|+..++. +++++|+++.+++++.+|..|.||||+|+..++       .+++++|+++|+++
T Consensus        88 -----~~d~~~g~TpLh~A~~~g~~-~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~-------~~iv~~Ll~~ga~~  154 (166)
T PHA02743         88 -----ARELGTGNTLLHIAASTKNY-ELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD-------RRMMEILRANGAVC  154 (166)
T ss_pred             -----CCCCCCCCcHHHHHHHhCCH-HHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence                 788 5899999999999999 999999965699999999999999999999985       69999999999999


Q ss_pred             Cccccc
Q 004286          225 DKLQEE  230 (763)
Q Consensus       225 ~~~~~~  230 (763)
                      +..+..
T Consensus       155 ~~~~~~  160 (166)
T PHA02743        155 DDPLSI  160 (166)
T ss_pred             CCcccC
Confidence            987754

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=3.1e-21  Score=183.78  Aligned_cols=136  Identities=18%  Similarity=0.189  Sum_probs=119.5

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCccCCC
Q 004286           39 ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGN----VSMCKCIATADPRLIGER  114 (763)
Q Consensus        39 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~  114 (763)
                      +.+|..|.||||+||+.|+.++++.|+........+++++.+|..|+||||+|+..|+    .+++++|++.|++ ++.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCC
Confidence            3467899999999999999999999875421111236789999999999999999999    5899999999999 8998


Q ss_pred             CC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccc
Q 004286          115 NH-ENETPFFLAARHGHKDAFLCLHY-LCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEK  182 (763)
Q Consensus       115 ~~-~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~  182 (763)
                      +. .|+||||+|+..++.+++++|++ .|++++     .+|.+|+||||+|+..++. +++++|++. ++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-----~~n~~g~tpL~~A~~~~~~-~iv~~L~~~-~~  156 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-----FCNADNKSPFELAIDNEDV-AMMQILREI-VA  156 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-----cCCCCCCCHHHHHHHCCCH-HHHHHHHHH-HH
Confidence            85 89999999999999999999998 599888     8999999999999999999 999999984 54

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2.5e-21  Score=190.01  Aligned_cols=51  Identities=25%  Similarity=0.386  Sum_probs=45.8

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH
Q 004286           77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR  127 (763)
Q Consensus        77 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~  127 (763)
                      +|..|.+|+|+||||+.++++++|+.||+.|...++.+|+.|.||+++|+.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaAL  311 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAAL  311 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHH
Confidence            788899999999999999999999999999988899999999999998875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=5.1e-21  Score=198.20  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             CCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchh
Q 004286          452 DTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSAL  531 (763)
Q Consensus       452 ~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpL  531 (763)
                      .+..|.|.||+|+.+|..++.++||+ .+.+++.+|.+||||||.|+..|+.++.++|+++++    .++.....|.||+
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga----~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA----DMDAKTKMGETPL  268 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc----ccchhhhcCCCCc
Confidence            34459999999999999999999999 677789999999999999999999999999999998    6888899999999


Q ss_pred             hhHhhc
Q 004286          532 HLAATL  537 (763)
Q Consensus       532 H~Aa~~  537 (763)
                      .+|..-
T Consensus       269 dv~dee  274 (527)
T KOG0505|consen  269 DVADEE  274 (527)
T ss_pred             cchhhh
Confidence            999864

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=5e-21  Score=182.30  Aligned_cols=136  Identities=17%  Similarity=0.172  Sum_probs=121.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhc------CCCccCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCC
Q 004286           77 LKIGDERGSTPLHIAAGLGNVSMCKCIATA------DPRLIGERNHENETPFFLAARHGH----KDAFLCLHYLCASVDD  146 (763)
Q Consensus        77 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~ga~~~~  146 (763)
                      ++.+|..|.||||+|++.|+.++++.|+..      +++ ++.+|..|+||||+|+..|+    .+++++|+++|++++ 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Confidence            445688999999999999999999998642      455 89999999999999999999    589999999999998 


Q ss_pred             CCccccCC-CCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          147 GYNYSRRK-NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       147 ~~~~~~d~-~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                          .++. +|+||||+|+..++. +++++|++..+++++.+|.+|.||||+|+..++       .++++.|++.++...
T Consensus        92 ----~~~~~~g~TpLh~A~~~~~~-~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~-------~~iv~~L~~~~~~~~  159 (169)
T PHA02741         92 ----AQEMLEGDTALHLAAHRRDH-DLAEWLCCQPGIDLHFCNADNKSPFELAIDNED-------VAMMQILREIVATSR  159 (169)
T ss_pred             ----CCCcCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC-------HHHHHHHHHHHHHhc
Confidence                7885 999999999999999 999999985689999999999999999999985       699999999876654


Q ss_pred             c
Q 004286          226 K  226 (763)
Q Consensus       226 ~  226 (763)
                      .
T Consensus       160 ~  160 (169)
T PHA02741        160 G  160 (169)
T ss_pred             C
Confidence            3

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=191.93  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=132.7

Q ss_pred             ccCCCCChH-HHHHHHcCCHHHHHHHHHHhhhhccccccccC----CCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004286           40 RITRSGGTA-LHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG----DERGSTPLHIAAGLGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        40 ~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~----d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      .+|..|+|+ ||.|+..|+.+++++|+++|      ++++.+    +..|.||||+|+..|+.+++++|+++|++ ++.+
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~G------AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~   99 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLG------ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRY   99 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCC------CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcc
Confidence            457777765 66677779999999999999      567776    46899999999999999999999999998 8986


Q ss_pred             -CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCc
Q 004286          115 -NHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVS  193 (763)
Q Consensus       115 -~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~T  193 (763)
                       +..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++. +++..+.   +.   ..+..+.+
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-----~kd~~G~TpL~~A~~~~~~-~~~~~~~---~~---~~~~~~~~  167 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADIN-----IQTNDMVTPIELALMICNN-FLAFMIC---DN---EISNFYKH  167 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHhCCh-hHHHHhc---CC---cccccccC
Confidence             4679999999999999999999999999999     8999999999999999998 8775554   22   25777889


Q ss_pred             HHHHHhcCCCCccCCchHHHHHHHHHcCC
Q 004286          194 PLHLLATKPNAFRSGSHLGLCTGIIYHCI  222 (763)
Q Consensus       194 pLh~A~~~~~~~~~~~~~~iv~~Ll~~ga  222 (763)
                      |++++.   +       .++++.|+++++
T Consensus       168 ~~~~~~---n-------~ei~~~Lish~v  186 (300)
T PHA02884        168 PKKILI---N-------FDILKILVSHFI  186 (300)
T ss_pred             hhhhhc---c-------HHHHHHHHHHHH
Confidence            999763   2       599999999987

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=8.2e-21  Score=178.32  Aligned_cols=139  Identities=12%  Similarity=0.011  Sum_probs=115.3

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhc-cccccccCCCCCchHHHHHHHcCCH---HHHHHHHhcCCCccC
Q 004286           37 HEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQ-QLKVLKIGDERGSTPLHIAAGLGNV---SMCKCIATADPRLIG  112 (763)
Q Consensus        37 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~~d~~g~TpLh~Aa~~g~~---~~v~~Ll~~~~~~~~  112 (763)
                      ..+..|.+|+||||+||+.|+.  ++++...+...+ ....++.+|..|+||||+|+..|+.   +++++|++.|++ ++
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-IN   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-cc
Confidence            3456788999999999999983  444444332111 1223556799999999999999987   468999999998 89


Q ss_pred             CCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccc
Q 004286          113 ERN-HENETPFFLAARHGHKDAFLCLHY-LCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN  185 (763)
Q Consensus       113 ~~~-~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~  185 (763)
                      .++ ..|+||||+|+..|+.+++++|++ .|++++     .+|..|.||||+|+..|+. +++++|++ .|++++
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-----~~~~~g~tpL~~A~~~~~~-~i~~~Ll~-~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-----ILNYAFKTPYYVACERHDA-KMMNILRA-KGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-----cccCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCC
Confidence            988 489999999999999999999998 499988     8999999999999999999 99999998 577654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.1e-20  Score=177.58  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=116.1

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC------CccCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCCC
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADP------RLIGERNHENETPFFLAARHGHK---DAFLCLHYLCASVD  145 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~------~~~~~~~~~g~TpLh~A~~~g~~---~~v~~Ll~~ga~~~  145 (763)
                      ...+.+|.+|.||||+|++.|+.  ++++...+.      ..++.+|.+|+||||+|+..|+.   +++++|+++|++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            34667889999999999999983  344433221      12455789999999999999987   46899999999998


Q ss_pred             CCCccccC-CCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCC
Q 004286          146 DGYNYSRR-KNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISV  224 (763)
Q Consensus       146 ~~~~~~~d-~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~  224 (763)
                           .+| .+|+||||+|+..|+. +++++|+++.+++++.+|..|.||||+|+..++       .+++++|+++|++.
T Consensus        86 -----~~~~~~g~T~Lh~A~~~~~~-~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~-------~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 -----GKERVFGNTPLHIAVYTQNY-ELATWLCNQPGVNMEILNYAFKTPYYVACERHD-------AKMMNILRAKGAQC  152 (154)
T ss_pred             -----ccCCCCCCcHHHHHHHhCCH-HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence                 787 5999999999999999 999999986689999999999999999999885       69999999999987


Q ss_pred             C
Q 004286          225 D  225 (763)
Q Consensus       225 ~  225 (763)
                      +
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            6

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=5.3e-20  Score=162.14  Aligned_cols=145  Identities=19%  Similarity=0.122  Sum_probs=131.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      -.+.+|+..+....|+.||+.-+     .-+|.+|.+|.||||-|+++||.+||+.|+..|++ .+.+...|+||||-||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~a-----n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKA-----NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcc-----ccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhh
Confidence            35678999999999999998754     45899999999999999999999999999999999 9999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          127 RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      ...+.+++.+|+.+|+|+|     +......||||.||...+.-..+.+||......+-.++..+.||+.+|-+.+
T Consensus       139 kWnN~~va~~LLqhgaDVn-----A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADVN-----AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cccchhHHHHHHhccCccc-----ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999999999999999     8888889999999988776577888887667788889999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.2e-20  Score=177.40  Aligned_cols=138  Identities=23%  Similarity=0.208  Sum_probs=103.7

Q ss_pred             HHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHH
Q 004286           13 GLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAA   92 (763)
Q Consensus        13 ~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa   92 (763)
                      .+|..|+.|+.-.|+-.|.+. .-+.|.-|..|.+|||+||+.||..+|+.|+.+|      +-+|..+....||||+|+
T Consensus         3 dif~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rg------arvn~tnmgddtplhlaa   75 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG------ARVNSTNMGDDTPLHLAA   75 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcc------cccccccCCCCcchhhhh
Confidence            356777777776666666654 5566777777788888888888888888888777      446677777777888888


Q ss_pred             HcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHH
Q 004286           93 GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA  163 (763)
Q Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A  163 (763)
                      ..||.++|+.|++..++ +|..|..|.|||||||..|...+.+-|+..|+-++     ..+++|.|||..|
T Consensus        76 ahghrdivqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~-----icnk~g~tpldka  140 (448)
T KOG0195|consen   76 AHGHRDIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-----ICNKKGMTPLDKA  140 (448)
T ss_pred             hcccHHHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceee-----ecccCCCCchhhh
Confidence            88888888777777777 77777778888888888777777777777777777     7777777777665

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=4e-19  Score=156.66  Aligned_cols=146  Identities=21%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      ..-+..|+..+...+|+++|.+. .-.+|.+|.+|.||||-|+.+||.++|+.|+..|      ++++.+...||||||-
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g------An~~a~T~~GWTPLhS  136 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG------ANKEAKTNEGWTPLHS  136 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHcc------CCcccccccCccchhh
Confidence            34578899999999999999985 4668999999999999999999999999999998      7789999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCH-HHHHHHH-HcCCCCCCCCccccCCCCChHHHHHHHcCC
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHK-DAFLCLH-YLCASVDDGYNYSRRKNGETILHYAISGYY  168 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll-~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~  168 (763)
                      ||.+++.+++-.||++|++ +|+......||||+||...+. ..+.+|+ ..+..+.     .++..+.||+.+|-+.+-
T Consensus       137 AckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-----~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-----LKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChh-----hhcCccchHHHHHHHhhh
Confidence            9999999999999999999 999999999999999987665 4566665 4465655     788999999999987754


Q ss_pred             h
Q 004286          169 F  169 (763)
Q Consensus       169 ~  169 (763)
                      .
T Consensus       211 s  211 (228)
T KOG0512|consen  211 S  211 (228)
T ss_pred             h
Confidence            4

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.9e-19  Score=171.08  Aligned_cols=141  Identities=30%  Similarity=0.412  Sum_probs=124.8

Q ss_pred             cccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCcccc
Q 004286           73 QLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSR  152 (763)
Q Consensus        73 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~  152 (763)
                      ...|+|.-|..|.+||||||+.|+..+|+.|+.+|+. +|..|....||||+|+.+||.++|+.|++..+|+|     +.
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kadvn-----av   96 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-----AV   96 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-----hh
Confidence            3477999999999999999999999999999999999 99999999999999999999999999999999999     99


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          153 RKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       153 d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                      +..|.|||||||..|+. .+++-|+. .|+.++..|++|.|||..|--.-       .-.+.+.--++|-++|...
T Consensus        97 nehgntplhyacfwgyd-qiaedli~-~ga~v~icnk~g~tpldkakp~l-------~~~l~e~aek~gq~~nrip  163 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYD-QIAEDLIS-CGAAVNICNKKGMTPLDKAKPML-------KNTLLEIAEKHGQSPNRIP  163 (448)
T ss_pred             hccCCCchhhhhhhcHH-HHHHHHHh-ccceeeecccCCCCchhhhchHH-------HHHHHHHHHHhCCCCCccc
Confidence            99999999999999999 99999999 69999999999999999875421       1123333335888888655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.9e-18  Score=176.16  Aligned_cols=151  Identities=13%  Similarity=-0.004  Sum_probs=129.2

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCccccccC----CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccC-CC
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARIT----RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG-DE   82 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d----~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-d~   82 (763)
                      +...++|+.|+..|+.+.++.|+..  |++++.++    ..|.||||+|+..|+.+++++|+++|      ++++.+ +.
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G------ADVN~~~~~  102 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG------ADVNRYAEE  102 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCcCcccCC
Confidence            3445677778888899988888887  89998864    58999999999999999999999998      678886 46


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHH
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY  162 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~  162 (763)
                      .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|++.++.+++..+.  |.        ..+..+.+|+++
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~  171 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMIC--DN--------EISNFYKHPKKI  171 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhc--CC--------cccccccChhhh
Confidence            899999999999999999999999999 9999999999999999999999886664  32        345677889987


Q ss_pred             HHHcCChHHHHHHHHHhccc
Q 004286          163 AISGYYFVDLAFQIIHLYEK  182 (763)
Q Consensus       163 A~~~g~~~~iv~~LL~~~~~  182 (763)
                      +   ++. |++++|+.+ +.
T Consensus       172 ~---~n~-ei~~~Lish-~v  186 (300)
T PHA02884        172 L---INF-DILKILVSH-FI  186 (300)
T ss_pred             h---ccH-HHHHHHHHH-HH
Confidence            6   367 999999985 54

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=7.6e-16  Score=167.85  Aligned_cols=85  Identities=26%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhH
Q 004286          455 KRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA  534 (763)
Q Consensus       455 ~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~A  534 (763)
                      -|+.||-.||.-++.|+|++|++ ++++++.+|++|+|.||..+.+-..++.+++++.++.  .+...+|++|-|||-+|
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHH
Confidence            49999999999999999999999 7889999999999999999999999999999999984  35788999999999999


Q ss_pred             hhcCCCCC
Q 004286          535 ATLGDHKP  542 (763)
Q Consensus       535 a~~g~~~~  542 (763)
                      |+.|..++
T Consensus       316 aklGk~em  323 (782)
T KOG3676|consen  316 AKLGKKEM  323 (782)
T ss_pred             HHhhhHHH
Confidence            99998443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=9.2e-17  Score=174.89  Aligned_cols=194  Identities=19%  Similarity=0.228  Sum_probs=162.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCC-------CccccccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcccccccc-
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDD-------RIHEARITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQLKVLKI-   79 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~-------~~~~~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~-   79 (763)
                      +.+++.+..+++.++...++....       ..+++.+...|.|.||.|..+   ++.++++.|++.-++--  .++-. 
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~li--nd~~~~  179 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLI--NDIYTS  179 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHh--hhhhhh
Confidence            478888999999888877776521       155666778899999999974   56799999998754210  11111 


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC---------C--------------CCCChHHHHHHHcCCHHHHHH
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER---------N--------------HENETPFFLAARHGHKDAFLC  136 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~---------~--------------~~g~TpLh~A~~~g~~~~v~~  136 (763)
                      ....|+||||+|..+.+.++|++|++.|+| ++.+         |              ..|+.||-.||-.++.|++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            235699999999999999999999999998 5543         1              138899999999999999999


Q ss_pred             HHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc--ccccccCCCcHHHHHhcCCCCccCCchHHHH
Q 004286          137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL--VNFVNERGVSPLHLLATKPNAFRSGSHLGLC  214 (763)
Q Consensus       137 Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~--~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv  214 (763)
                      |+++|||++     ++|.+|+|.||..+.+-.. ++..++|+ +|++  ...+|+.|.|||.+|+.-|.       .++.
T Consensus       259 Ll~~gAd~~-----aqDS~GNTVLH~lVi~~~~-~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk-------~emf  324 (782)
T KOG3676|consen  259 LLAHGADPN-----AQDSNGNTVLHMLVIHFVT-EMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGK-------KEMF  324 (782)
T ss_pred             HHhcCCCCC-----ccccCCChHHHHHHHHHHH-HHHHHHHh-cCCCccccccccCCCChHHHHHHhhh-------HHHH
Confidence            999999999     9999999999999999888 99999999 5888  88899999999999999995       6999


Q ss_pred             HHHHHcC
Q 004286          215 TGIIYHC  221 (763)
Q Consensus       215 ~~Ll~~g  221 (763)
                      +.+++..
T Consensus       325 ~~ile~~  331 (782)
T KOG3676|consen  325 QHILERR  331 (782)
T ss_pred             HHHHHhh
Confidence            9999874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=2.8e-16  Score=141.72  Aligned_cols=124  Identities=31%  Similarity=0.458  Sum_probs=114.4

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        41 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      .|.+|.||||+|+..|+.++++.|++.|      .+.+..+..|.||||+|+..++.++++.|++.++. ++..+..|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~------~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENG------ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcC------CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCC
Confidence            4678999999999999999999999988      44578899999999999999999999999999987 7888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHH
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQII  177 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL  177 (763)
                      |+|+|+..++.+++++|++++.+.+     ..|..|.||+|+|...++. +++++|+
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~~~Ll  126 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVN-----ARDKDGRTPLHLAAKNGHL-EVVKLLL  126 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHhcCCH-HHHHHhC
Confidence            9999999999999999999998887     7889999999999999999 9998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=1.9e-16  Score=133.61  Aligned_cols=86  Identities=29%  Similarity=0.393  Sum_probs=45.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHc
Q 004286           49 LHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARH  128 (763)
Q Consensus        49 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  128 (763)
                      ||+||+.|+.+++++|++.+      .+++.    |+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~------~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG------ADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT------STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCc------CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHc
Confidence            45555555555555555544      22222    55555555555555555555555555 555555555555555555


Q ss_pred             CCHHHHHHHHHcCCCCC
Q 004286          129 GHKDAFLCLHYLCASVD  145 (763)
Q Consensus       129 g~~~~v~~Ll~~ga~~~  145 (763)
                      |+.+++++|+++|++++
T Consensus        70 ~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             THHHHHHHHHHTTT-TT
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            55555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.6e-16  Score=132.74  Aligned_cols=89  Identities=30%  Similarity=0.368  Sum_probs=81.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      ||+|++.|+.++++.|++.+.+ ++.    |+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+|+.+|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADIN-----SQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT------BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-----ccCCCCCCHHHHHHHcC
Confidence            7999999999999999998877 555    8999999999999999999999999999     89999999999999999


Q ss_pred             ChHHHHHHHHHhccccccccc
Q 004286          168 YFVDLAFQIIHLYEKLVNFVN  188 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~~d  188 (763)
                      +. +++++|++ +|++++.+|
T Consensus        71 ~~-~~~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   71 NL-EIVKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HH-HHHHHHHH-TTT-TTSS-
T ss_pred             CH-HHHHHHHH-cCCCCCCcC
Confidence            99 99999999 499998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2.1e-15  Score=136.01  Aligned_cols=125  Identities=30%  Similarity=0.459  Sum_probs=115.1

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCCh
Q 004286           79 IGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGET  158 (763)
Q Consensus        79 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~T  158 (763)
                      .+|.+|.||||+|+..|+.++++.|++.+.. .+.++..|.||||+|+..++.+++++|++.|++++     ..+..|.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-----ARDKDGNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCC
Confidence            3567899999999999999999999999988 68899999999999999999999999999998877     78899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHH
Q 004286          159 ILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGII  218 (763)
Q Consensus       159 pLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll  218 (763)
                      |+|+|+..++. +++++|+++ +.+++..+..|.||+++|...++       .+++++|+
T Consensus        76 ~l~~a~~~~~~-~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~Ll  126 (126)
T cd00204          76 PLHLAARNGNL-DVVKLLLKH-GADVNARDKDGRTPLHLAAKNGH-------LEVVKLLL  126 (126)
T ss_pred             HHHHHHHcCcH-HHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCC-------HHHHHHhC
Confidence            99999999999 999999994 78899999999999999999874       68888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=2.6e-14  Score=143.74  Aligned_cols=131  Identities=30%  Similarity=0.332  Sum_probs=120.5

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCC-----HHHHHHHHhcCC--C
Q 004286           37 HEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGN-----VSMCKCIATADP--R  109 (763)
Q Consensus        37 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~-----~~~v~~Ll~~~~--~  109 (763)
                      .....+..+.+++|.|+..+..+++++++..|      .+++.+|..|.||||+|+..|+     .++++.|++.|+  +
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~  138 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASG------ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD  138 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcC------CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC
Confidence            34445677999999999999999999999988      6689999999999999999999     999999999999  5


Q ss_pred             ccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          110 LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       110 ~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      ..+.+|..|.||||+|+..|+.+++++|++.|++++     .++..|.|+++.|+..++. ++++.+++.
T Consensus       139 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-----~~~~~g~t~l~~a~~~~~~-~~~~~l~~~  202 (235)
T COG0666         139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN-----SRNSYGVTALDPAAKNGRI-ELVKLLLDK  202 (235)
T ss_pred             CccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-----ccccCCCcchhhhcccchH-HHHHHHHhc
Confidence            588889999999999999999999999999999998     8899999999999999999 999999984

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=2.6e-14  Score=112.72  Aligned_cols=100  Identities=23%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHH
Q 004286           13 GLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAA   92 (763)
Q Consensus        13 ~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa   92 (763)
                      ...++..+|..++|++...+  +.++|..- .|+||||||+-.|+.+++++|+..|      ++++.+|+.|-|||.-|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iG------A~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIG------ANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHHhc------cccCCccccCCcHHHHHH
Confidence            45566677777777777776  56666533 6777777777777777777777776      557777777777777777


Q ss_pred             HcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           93 GLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      ..||.++|++|++.|++ -..+..+|.+.+
T Consensus        76 wEGH~~cVklLL~~GAd-rt~~~PdG~~~~  104 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGAD-RTIHAPDGTALI  104 (117)
T ss_pred             HHhhHHHHHHHHHcCcc-cceeCCCchhHH
Confidence            77777777777777776 455555565543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=5.8e-13  Score=133.90  Aligned_cols=130  Identities=25%  Similarity=0.287  Sum_probs=120.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCC
Q 004286           77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH-----KDAFLCLHYLCA---SVDDGY  148 (763)
Q Consensus        77 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---~~~~~~  148 (763)
                      ....+..+.+++|.++..+..++++.++..+.+ ++.+|..|.||||+|+..|+     .+++++|++.|+   ..+   
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~---  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN---  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc---
Confidence            455677799999999999999999999999999 69999999999999999999     999999999999   444   


Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC
Q 004286          149 NYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       149 ~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                        .+|..|.||||+|+..|+. +++++|++. +++++..+..|.|+++.|+..+.       .++++.+++.+
T Consensus       142 --~~~~~g~tpl~~A~~~~~~-~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~-------~~~~~~l~~~~  203 (235)
T COG0666         142 --LRDEDGNTPLHWAALNGDA-DIVELLLEA-GADPNSRNSYGVTALDPAAKNGR-------IELVKLLLDKG  203 (235)
T ss_pred             --ccCCCCCchhHHHHHcCch-HHHHHHHhc-CCCCcccccCCCcchhhhcccch-------HHHHHHHHhcC
Confidence              6799999999999999999 999999994 99999999999999999999985       69999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=7.8e-14  Score=110.07  Aligned_cols=100  Identities=23%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH
Q 004286           48 ALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR  127 (763)
Q Consensus        48 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~  127 (763)
                      -+.+++.+|..+-|+..+..|      .++|-. ..|+||||+|+-.|..+++++|+..|++ ++.+|+.|-|||.-|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g------~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG------LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc------ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHH
Confidence            345666666666666666555      223222 2566666666666666666666666666 66666666666666666


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCccccCCCCChHH
Q 004286          128 HGHKDAFLCLHYLCASVDDGYNYSRRKNGETIL  160 (763)
Q Consensus       128 ~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpL  160 (763)
                      .||.++|++|++.|++-.     .+..+|.+.+
T Consensus        77 EGH~~cVklLL~~GAdrt-----~~~PdG~~~~  104 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRT-----IHAPDGTALI  104 (117)
T ss_pred             HhhHHHHHHHHHcCcccc-----eeCCCchhHH
Confidence            666666666666666655     5555555544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=8.2e-13  Score=126.32  Aligned_cols=123  Identities=23%  Similarity=0.221  Sum_probs=104.4

Q ss_pred             hhhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-CCCCCc
Q 004286            7 IDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI-GDERGS   85 (763)
Q Consensus         7 ~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~d~~g~   85 (763)
                      .++.+++|+.+..+|+.+....||..  --.+|.+|.+|+|+|..|+..|+.++|++||+.|+|      +|. ++..+.
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD------vN~~qhg~~Y   80 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD------VNDKQHGTLY   80 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC------cCcccccccc
Confidence            45678899999999999999999887  455778899999999999999999999999999854      443 567788


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLH  138 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  138 (763)
                      ||||+||.+|+.++.++|++.|+. ....|.-|+|+-.+|+.-||.++|..+-
T Consensus        81 TpLmFAALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   81 TPLMFAALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cHHHHHHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999999988 7888888999999999999988887664

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=1.1e-12  Score=151.22  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=98.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      +.||.|+..|+.++++.|++.|++ +|.+|..|.||||+||..|+.+++++|+++|++++     .+|.+|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-----~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-----LLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHH
Confidence            458899999999999999999998 99999999999999999999999999999999999     899999999999999


Q ss_pred             cCChHHHHHHHHHh------ccccccccccCCCcHHHHHh
Q 004286          166 GYYFVDLAFQIIHL------YEKLVNFVNERGVSPLHLLA  199 (763)
Q Consensus       166 ~g~~~~iv~~LL~~------~~~~~~~~d~~G~TpLh~A~  199 (763)
                      .|+. +++++|++.      .+++++..+..|.+|+..+.
T Consensus       158 ~g~~-~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        158 NGFR-EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCcH-HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999 999999983      27788888888888877665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4.9e-13  Score=137.58  Aligned_cols=118  Identities=19%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHc
Q 004286           49 LHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARH  128 (763)
Q Consensus        49 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  128 (763)
                      |.-|+..|..++|+..+..-      .|+...|+.|-|+||-|+..||.+||++|++.|++ +|..|.+||||||+|+..
T Consensus       554 LLDaaLeGEldlVq~~i~ev------~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV------TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh------cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhc
Confidence            34466677777777777654      45666677777777777777777777777777777 777777777777777777


Q ss_pred             CCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH--HcCChHHHHHHHHH
Q 004286          129 GHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI--SGYYFVDLAFQIIH  178 (763)
Q Consensus       129 g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~--~~g~~~~iv~~LL~  178 (763)
                      ++..+++.|+++|+-+-.    ..-.++.|+.--+-  +.|+. ++.++|-.
T Consensus       627 Nnv~~ckqLVe~GaavfA----sTlSDmeTa~eKCee~eeGY~-~CsqyL~~  673 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFA----STLSDMETAAEKCEEMEEGYD-QCSQYLYG  673 (752)
T ss_pred             CchHHHHHHHhccceEEe----eecccccchhhhcchhhhhHH-HHHHHHHH
Confidence            777777777777776652    33356667765543  45666 77777764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=3.4e-13  Score=101.74  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             HHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhH
Q 004286          475 ILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA  534 (763)
Q Consensus       475 LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~A  534 (763)
                      ||+.++.+++.+|..|+||||+||++|+.+++++|++.+.    +++.+|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~----d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA----DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC----CCCCCcCCCCCHHHhC
Confidence            4665667788888888888888888888888888887776    6888888888888887

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=2.7e-12  Score=147.88  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=97.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      +.||.|+..|+.+.++.|++.|      +++|.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G------adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG------ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            3588999999999999999988      67899999999999999999999999999999999 9999999999999999


Q ss_pred             HcCCHHHHHHHHHc-------CCCCCCCCccccCCCCChHHHHHH
Q 004286          127 RHGHKDAFLCLHYL-------CASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~-------ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      ..|+.+++++|+++       |++.+     ..+..|.+|+..+.
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~ga~~~-----~~~~~g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELGANAK-----PDSFTGKPPSLEDS  196 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccCCCCC-----ccccCCCCccchhh
Confidence            99999999999998       77776     67788888876554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=8.8e-13  Score=99.47  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=11.2

Q ss_pred             cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286          111 IGERNHENETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus       111 ~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      ++.+|..|.||||+||.+|+.+++++|++.|++++
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~   43 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN   43 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC
Confidence            34444444444444444444444444444444433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.5e-12  Score=96.51  Aligned_cols=18  Identities=44%  Similarity=0.553  Sum_probs=6.0

Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 004286           48 ALHIAVSDGQEEIVEDLV   65 (763)
Q Consensus        48 pLh~A~~~g~~~~v~~Ll   65 (763)
                      |||+||+.|+.+++++|+
T Consensus         4 ~lh~A~~~g~~~~~~~Ll   21 (54)
T PF13637_consen    4 PLHWAARSGNLEIVKLLL   21 (54)
T ss_dssp             HHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHH
Confidence            333333333333333333

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.8e-12  Score=95.53  Aligned_cols=53  Identities=34%  Similarity=0.550  Sum_probs=22.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHH
Q 004286           84 GSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL  137 (763)
Q Consensus        84 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~L  137 (763)
                      |+||||+|++.|+.++++.|++++.+ ++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444444444 444444444444444444444444444

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.30  E-value=1.8e-11  Score=117.27  Aligned_cols=122  Identities=19%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      -..||.-+...|..+-...||+.-      ..+|.+|..|.|||..|+..|+.++|++|++.|++.-..++..+.||||.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v------r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV------RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh------hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHH
Confidence            357899999999999999998864      45899999999999999999999999999999999555567789999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHH
Q 004286          125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH  178 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~  178 (763)
                      |+.+|+.++.++|++.|+...     ..|.-|+|+-..|+.-|+. ++|..+=.
T Consensus        86 AALSGn~dvcrllldaGa~~~-----~vNsvgrTAaqmAAFVG~H-~CV~iINN  133 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMY-----LVNSVGRTAAQMAAFVGHH-ECVAIINN  133 (396)
T ss_pred             HHHcCCchHHHHHHhccCccc-----cccchhhhHHHHHHHhcch-HHHHHHhc
Confidence            999999999999999999998     8899999999999999999 98877643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1e-11  Score=128.08  Aligned_cols=117  Identities=27%  Similarity=0.321  Sum_probs=64.4

Q ss_pred             HHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHH
Q 004286           14 LFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAG   93 (763)
Q Consensus        14 L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~   93 (763)
                      |+.|+..|..+.|++++.+  -.|+...+..|-|+||-|+..||.+||++|++.|      +++|..|.+||||||+||.
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g------anVNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFG------ANVNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcC------CcccCccCCCCchhhhhhh
Confidence            3445555655555555555  4555555555666666666666666666666555      4555556666666666666


Q ss_pred             cCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH--HcCCHHHHHHHH
Q 004286           94 LGNVSMCKCIATADPRLIGERNHENETPFFLAA--RHGHKDAFLCLH  138 (763)
Q Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll  138 (763)
                      .+++.+++.|++.|+...-..=.++.|+..-+-  +.|..+|.+||.
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            666666666666555533333344555544332  245555555554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.92  E-value=3.2e-09  Score=110.43  Aligned_cols=123  Identities=21%  Similarity=0.264  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..+.++.|+..++.-.+++.-..  |.+.-.++.+..|.||+|+..|+-|+|+++|++|+.    ..++..|+.|.|+||
T Consensus       866 iseeil~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----elld~~de~get~lh  939 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----ELLDMADETGETALH  939 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----HHHHHHhhhhhHHHH
Confidence            34567888888887777777666  455556677888888888888888888888888853    567778888888888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHY  139 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~  139 (763)
                      -|+..++..++++|++.|+. +...|..|.||-..|-+.|..+...||-.
T Consensus       940 kaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            88888888888888888887 77788888888888888888888887754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=1.8e-08  Score=103.35  Aligned_cols=94  Identities=20%  Similarity=0.142  Sum_probs=81.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      +.++..++++|+..|....++.+.-.|      .|++.+|.+.+|+||.||..|+.+++++|++....+++.+|+.|+||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g------~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG------MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP  576 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc------ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence            355677889999999999888887777      67889999999999999999999999999998777788999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC
Q 004286          122 FFLAARHGHKDAFLCLHYLC  141 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~g  141 (763)
                      |--|...+|.+++++|-+.-
T Consensus       577 lDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHh
Confidence            99999999999999987753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.67  E-value=1.3e-08  Score=110.83  Aligned_cols=101  Identities=25%  Similarity=0.255  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCC-CCchHHHHHHHcCCHHH
Q 004286           21 GKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE-RGSTPLHIAAGLGNVSM   99 (763)
Q Consensus        21 g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~   99 (763)
                      +....++.++.+..+-..|..|..|+|+||+|+..|..+++++||++|      .+++.+|. .|+||||-|...|+.++
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhG------idv~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHG------IDVFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcC------ceeeeccccccchHhhHhhhhchHHH
Confidence            444457777877766667888999999999999999999999999998      67888885 59999999999999999


Q ss_pred             HHHHHhcCCCccCCCCCCCChHHHHHHHc
Q 004286          100 CKCIATADPRLIGERNHENETPFFLAARH  128 (763)
Q Consensus       100 v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  128 (763)
                      +-.||++|.. +..+|++|.+||..-++-
T Consensus       102 a~lLL~~g~S-L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  102 ASLLLSKGRS-LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHHHHhcCCc-eEEecccCCCHHHHHhhc
Confidence            9999999988 889999999999887773

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.67  E-value=6.1e-08  Score=101.18  Aligned_cols=118  Identities=23%  Similarity=0.117  Sum_probs=99.0

Q ss_pred             HHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CccCCCCCCCChHHHHHHHc
Q 004286           50 HIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADP-RLIGERNHENETPFFLAARH  128 (763)
Q Consensus        50 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~g~TpLh~A~~~  128 (763)
                      .-|+..++.--++.+-..|      .++-.++.+..|.||+|+..|+-++|++++++++ .+++..|..|+|+||-|+..
T Consensus       871 l~av~~~D~~klqE~h~~g------g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNG------GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcC------CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence            3444444433333333334      5688889999999999999999999999999997 45778889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          129 GHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       129 g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      ++..+.++|++.|+...     ..|..|.||-..|-+.|+. |++-+|-.+
T Consensus       945 ~~r~vc~~lvdagasl~-----ktd~kg~tp~eraqqa~d~-dlaayle~r  989 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASLR-----KTDSKGKTPQERAQQAGDP-DLAAYLESR  989 (1004)
T ss_pred             cchHHHHHHHhcchhhe-----ecccCCCChHHHHHhcCCc-hHHHHHhhh
Confidence            99999999999999998     8999999999999999999 999988764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.66  E-value=1.4e-08  Score=110.60  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC
Q 004286           76 VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH-ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK  154 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~  154 (763)
                      ..|++|..|+|+||+|+..|..++++.|+++|.+ ++.+|. .|+||||.|+..|+.+++-.|+++|+...     .+|+
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~-----i~Dk  117 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR-----IKDK  117 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCceE-----Eecc
Confidence            3777888888888888888888888888888887 666665 68888888888888888888888887776     7888


Q ss_pred             CCChHHHHHHHc
Q 004286          155 NGETILHYAISG  166 (763)
Q Consensus       155 ~G~TpLh~A~~~  166 (763)
                      +|.+||..-++-
T Consensus       118 eglsplq~~~r~  129 (1267)
T KOG0783|consen  118 EGLSPLQFLSRV  129 (1267)
T ss_pred             cCCCHHHHHhhc
Confidence            888888777763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.66  E-value=2.3e-08  Score=102.60  Aligned_cols=90  Identities=21%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      --++++||..|+...+++++..  +.+.+..|.+.+|+||+||..|+.+++++|++.-     +.+++.+|.+|+|||--
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~-----kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC-----KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHH-----cCCCChhhccCCCcchH
Confidence            4578999999999999999999  8999999999999999999999999999999974     47899999999999999


Q ss_pred             HHHcCCHHHHHHHHhcC
Q 004286           91 AAGLGNVSMCKCIATAD  107 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~  107 (763)
                      |-..+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.60  E-value=5.1e-08  Score=62.41  Aligned_cols=29  Identities=31%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      +|+||||+||+.|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777776665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.56  E-value=2e-07  Score=96.25  Aligned_cols=84  Identities=23%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHc
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERN-HENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISG  166 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~  166 (763)
                      ||-.++.|+.+..-.|+..|++ +|..+ ..|.||||.|++.|+..-+++|.-+|||++     ..|.+|.||+.+|-..
T Consensus       137 LhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-----a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-----AQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-----CCCCCCCcHHHHHHhc
Confidence            5555555555555555555555 33332 245555555555555555555555555555     5555555555555555


Q ss_pred             CChHHHHHHHHH
Q 004286          167 YYFVDLAFQIIH  178 (763)
Q Consensus       167 g~~~~iv~~LL~  178 (763)
                      ||. ++++.|++
T Consensus       211 gH~-~laeRl~e  221 (669)
T KOG0818|consen  211 GHH-ELAERLVE  221 (669)
T ss_pred             Cch-HHHHHHHH
Confidence            555 55555554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=2.1e-07  Score=97.60  Aligned_cols=88  Identities=25%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH
Q 004286           48 ALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR  127 (763)
Q Consensus        48 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~  127 (763)
                      |||+++.....+-.+.++..-.    ...++.+|..|+||||+|+..|+.+.++.|+.+|++ +..+|++|++|||.|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~----~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKV----SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhh----hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHH
Confidence            4666666555444433222211    134556666666666666666666666666666666 56666666666666666


Q ss_pred             cCCHHHHHHHHHc
Q 004286          128 HGHKDAFLCLHYL  140 (763)
Q Consensus       128 ~g~~~~v~~Ll~~  140 (763)
                      .|+.+++..++.+
T Consensus        98 ~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   98 TGNEQIITEVLRH  110 (560)
T ss_pred             cCCHHHHHHHHHH
Confidence            6666665555544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.49  E-value=1.6e-07  Score=60.15  Aligned_cols=26  Identities=38%  Similarity=0.671  Sum_probs=12.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCC
Q 004286           84 GSTPLHIAAGLGNVSMCKCIATADPR  109 (763)
Q Consensus        84 g~TpLh~Aa~~g~~~~v~~Ll~~~~~  109 (763)
                      |+||||+||+.|+.+++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            44555555555555555555554444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.46  E-value=2.3e-07  Score=61.29  Aligned_cols=28  Identities=32%  Similarity=0.440  Sum_probs=16.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286          118 NETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus       118 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      |.||||+|+..|+.+++++|+++|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            5555555555555555555555555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.46  E-value=5.5e-07  Score=93.03  Aligned_cols=86  Identities=27%  Similarity=0.342  Sum_probs=71.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhccccccccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           48 ALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGD-ERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        48 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      -||..++.|+.+..-.||..|      +++|..+ +.|.||||.|++.|+..-+++|+-+|++ ++..|.+|.||+.+|-
T Consensus       136 QLhasvRt~nlet~LRll~lG------A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLG------AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcc------cccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHH
Confidence            488888889988888888888      4566655 5688999999999988888999888988 8888999999999998


Q ss_pred             HcCCHHHHHHHHHc
Q 004286          127 RHGHKDAFLCLHYL  140 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~  140 (763)
                      ..||-++.+.|++.
T Consensus       209 ~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 QGGHHELAERLVEI  222 (669)
T ss_pred             hcCchHHHHHHHHH
Confidence            88888887777664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.46  E-value=3.9e-07  Score=95.90  Aligned_cols=96  Identities=15%  Similarity=0.017  Sum_probs=83.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcC
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK  201 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~  201 (763)
                      |.-|+.......+-+|+.+|.... .+....+.+|+|+||+||+.|++ .+.++|+- ||+|+-.+|..|.|||.||-+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e-~~~t~~~~~grt~LHLa~~~gnV-vl~QLLiW-yg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE-VNETCGEGDGRTALHLAARKGNV-VLAQLLIW-YGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh-hhccccCCCCcchhhhhhhhcch-hHHHHHHH-hCccceecccCCchhhhhHhhc
Confidence            667777778888999999998765 45556778899999999999999 99999996 8999999999999999999999


Q ss_pred             CCCccCCchHHHHHHHHHcCCCCCcc
Q 004286          202 PNAFRSGSHLGLCTGIIYHCISVDKL  227 (763)
Q Consensus       202 ~~~~~~~~~~~iv~~Ll~~ga~~~~~  227 (763)
                      |.       -+++..|+++|+..+..
T Consensus       705 ~s-------qec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  705 GS-------QECIDVLLQYGCPDECG  723 (749)
T ss_pred             cc-------HHHHHHHHHcCCCcccc
Confidence            96       49999999999877643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.45  E-value=4.2e-07  Score=95.43  Aligned_cols=89  Identities=25%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             HHHHHHHcCCHHHHHH-HHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           87 PLHIAAGLGNVSMCKC-IATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        87 pLh~Aa~~g~~~~v~~-Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      |||+++.....+-... |...-+..++.+|..|.||||+|+..||.+.++.|+.+|+++.     .+|.+|++|||.|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-----~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-----IKNNEGWSPLHEAVS   97 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-----ccccccccHHHHHHH
Confidence            4666665554443332 2222222355666666666666666666666666666666665     566666666666666


Q ss_pred             cCChHHHHHHHHHhcc
Q 004286          166 GYYFVDLAFQIIHLYE  181 (763)
Q Consensus       166 ~g~~~~iv~~LL~~~~  181 (763)
                      .|+. +++..+|.++.
T Consensus        98 ~g~~-q~i~~vlr~~~  112 (560)
T KOG0522|consen   98 TGNE-QIITEVLRHLK  112 (560)
T ss_pred             cCCH-HHHHHHHHHhH
Confidence            6666 55555555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.42  E-value=3.5e-07  Score=60.44  Aligned_cols=31  Identities=35%  Similarity=0.554  Sum_probs=15.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCccCCCC
Q 004286           84 GSTPLHIAAGLGNVSMCKCIATADPRLIGERN  115 (763)
Q Consensus        84 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  115 (763)
                      |+||||+|+..|+.+++++|+++|++ ++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD-INARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence            45555555555555555555555554 44443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.38  E-value=7.5e-07  Score=93.82  Aligned_cols=83  Identities=19%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             HHHHcCCHHHHHHHHhcCCCc-cC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHc
Q 004286           90 IAAGLGNVSMCKCIATADPRL-IG--ERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISG  166 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~-~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~  166 (763)
                      -|+...++..+-+||.+|... +|  ..+.+|+|+||+||+.|++.+.++|+=+|+|+.     .+|.+|+|+|.||-+.
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-----~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-----ARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-----ecccCCchhhhhHhhc
Confidence            344444444455555544320 11  122234555555555555555555555555554     5555555555555555


Q ss_pred             CChHHHHHHHHH
Q 004286          167 YYFVDLAFQIIH  178 (763)
Q Consensus       167 g~~~~iv~~LL~  178 (763)
                      |.- |++..||.
T Consensus       705 ~sq-ec~d~llq  715 (749)
T KOG0705|consen  705 GSQ-ECIDVLLQ  715 (749)
T ss_pred             ccH-HHHHHHHH
Confidence            555 55555555

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=1.2e-06  Score=97.51  Aligned_cols=124  Identities=19%  Similarity=0.200  Sum_probs=92.8

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCC--ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCch
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDR--IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGST   86 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~--~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~T   86 (763)
                      ..+...+.|+..|+...|++.|.....  .++|..|.-|+++||+|+.+.+.|++++|+++.        +..     ..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~--------~~~-----gd   90 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS--------SEE-----GD   90 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc--------ccc-----ch
Confidence            345677889999999999999987644  678889999999999999999999999999864        111     46


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCc---------cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286           87 PLHIAAGLGNVSMCKCIATADPRL---------IGERNHENETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus        87 pLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      +|.+|...|..++|+.++.+....         ....-.-+.|||.+||..++.||+++|+.+|+.+.
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            888999999999999999875431         01112235567777777777777777776666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.14  E-value=3e-06  Score=96.49  Aligned_cols=134  Identities=16%  Similarity=0.038  Sum_probs=106.4

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHH-hhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCC
Q 004286           38 EARITRSGGTALHIAVSDGQEEIVEDLVRI-IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH  116 (763)
Q Consensus        38 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  116 (763)
                      .......|+|.+|.++..++...++.+++- |      ......|.+|.-.+|+ |..++.+.+-+|+......++.+|.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~------~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~  639 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAG------SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR  639 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccc------cCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC
Confidence            344567899999999999999999999985 4      3456677788888888 5567777777777665555999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDD-GYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      .|+||||+|+.+|+..++..|++.|++... .+....+..|.|+-..|-.+|+. .+..+|-+.
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~-gia~~lse~  702 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK-GIAGYLSEK  702 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc-chHHHHhhh
Confidence            999999999999999999999998887762 12334556799999999999998 888887763

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.04  E-value=4.3e-06  Score=96.17  Aligned_cols=78  Identities=21%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHH
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLH  196 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh  196 (763)
                      .|.|+||.|+..|..-++++|+++|+++|     .+|..|+||||.+...|+. ..+.+|+++ |++.++.+.+|.+||+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-----~~d~~g~~plh~~~~~g~~-~~~~~ll~~-~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVN-----ALDSKGRTPLHHATASGHT-SIACLLLKR-GADPNAFDPDGKLPLD  727 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcch-----hhhccCCCcchhhhhhccc-chhhhhccc-cccccccCccCcchhh
Confidence            35556666666666666666666666555     5566666666666666665 555555553 5566666666666666


Q ss_pred             HHhcC
Q 004286          197 LLATK  201 (763)
Q Consensus       197 ~A~~~  201 (763)
                      +|...
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            65443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=3e-05  Score=86.69  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=105.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      .+.--...||..|+.-.|+..++....  ..-++|.+|.-|+++||+|..+.+.+++++|++++.. .       ..+|.
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~--~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-~-------gdALL   93 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV--SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-E-------GDALL   93 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc--cccchhccChHhhhceecccccccHHHHHHHhcCccc-c-------chHHH
Confidence            445566789999999999999987543  3466888999999999999999999999999998755 2       45899


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCC-----CCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccc
Q 004286          124 LAARHGHKDAFLCLHYLCASVDD-----GYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNF  186 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~-----~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~  186 (763)
                      +|+..|..++|+.++.+-.....     ......-..+-|||.+||..+++ ||++.||.+ |+.+..
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nny-Eil~~Ll~k-g~~i~~  159 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNF-EILQCLLTR-GHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcch-HHHHHHHHc-CCCCCC
Confidence            99999999999999987544320     01113445678999999999999 999999996 666544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.90  E-value=2.3e-05  Score=78.78  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=45.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      --|..||+.|..+.|+.|++.|.+ +|.+|....+||.+|+..||.++|++|+++||-.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            456777888888888888887776 77788777788888888888888888888877665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.87  E-value=2.8e-05  Score=71.03  Aligned_cols=68  Identities=18%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA  142 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  142 (763)
                      .++|.+|..|||||++|+..|+.+.|.+|+.+|+..+...|..|.+++.+|-+.|+.++++.|-+.-.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            45677777777777777777777777777777744477777777777777777777777777766533

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=1e-05  Score=93.12  Aligned_cols=116  Identities=18%  Similarity=0.171  Sum_probs=95.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      ..++.+++-.|...-+..++.+..              +-..|.|+||.|+..|..-++++|+++|++ +|.+|..|+||
T Consensus       628 ~~~~~~~~~~~~~~~~~~~~n~~~--------------~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~p  692 (785)
T KOG0521|consen  628 SSDGECLPRIATALAHGCCENWPV--------------VLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTP  692 (785)
T ss_pred             ccCccchhhhhhhhcchhhhccch--------------hhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCc
Confidence            345666666665555444443332              234689999999999999999999999999 99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHH
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH  178 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~  178 (763)
                      ||.+...|+...+..|+++|++.+     +.+.+|.+||++|....+. +++-++.-
T Consensus       693 lh~~~~~g~~~~~~~ll~~~a~~~-----a~~~~~~~~l~~a~~~~~~-d~~~l~~l  743 (785)
T KOG0521|consen  693 LHHATASGHTSIACLLLKRGADPN-----AFDPDGKLPLDIAMEAANA-DIVLLLRL  743 (785)
T ss_pred             chhhhhhcccchhhhhcccccccc-----ccCccCcchhhHHhhhccc-cHHHHHhh
Confidence            999999999999999999999999     9999999999999887666 66666554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.81  E-value=3.9e-05  Score=70.15  Aligned_cols=70  Identities=20%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPR  109 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~  109 (763)
                      +.++|.+|..|||||+.|+..|+.+.+.+|+.+|.     +.+...|..|.+++.+|-+.|+.++++.|-+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-----a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-----AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCc-----ccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45788999999999999999999999999999985     67899999999999999999999999999987554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.59  E-value=0.00015  Score=73.22  Aligned_cols=84  Identities=18%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA  125 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A  125 (763)
                      .--|..||+.|..+.|+.|++.|      .++|.+|....+||.+|+..||.++|++|+++|+. -..-.-+|.-. |++
T Consensus        37 f~elceacR~GD~d~v~~LVetg------vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC-~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG------VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRC-HYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC------CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchh-hhh
Confidence            34588999999999999999987      77999999999999999999999999999999984 33333355544 444


Q ss_pred             HHcCCHHHHHHHHH
Q 004286          126 ARHGHKDAFLCLHY  139 (763)
Q Consensus       126 ~~~g~~~~v~~Ll~  139 (763)
                      +.+.  .+=+.|++
T Consensus       109 aLnd--~IR~mlls  120 (516)
T KOG0511|consen  109 ALND--RIRRMLLS  120 (516)
T ss_pred             hhhH--HHHHHHHH
Confidence            4432  23344444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.42  E-value=0.00027  Score=80.99  Aligned_cols=129  Identities=16%  Similarity=0.033  Sum_probs=99.1

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCccCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCccccC
Q 004286           76 VLKIGDERGSTPLHIAAGLGNVSMCKCIATA-DPRLIGERNHENETPFFLAARHGHKDAFLCLHY-LCASVDDGYNYSRR  153 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~d  153 (763)
                      ........|+|.||+++..++.-.++.+++- +.. ....|.+|.--+|. |..++.+.+-+|+. .|..++     .+|
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~-----i~D  638 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAID-----IRD  638 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeecccccc-----ccc
Confidence            3455667899999999999999999999995 443 45566677777777 66667777766664 466666     999


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHHhcccc------ccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHc
Q 004286          154 KNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYH  220 (763)
Q Consensus       154 ~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~------~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~  220 (763)
                      .+|+||||+|+.+|+. .++..|++. |++      +...+-.|.|+-..|..+|..       ++..+|-+.
T Consensus       639 ~~G~tpL~wAa~~G~e-~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s~g~~-------gia~~lse~  702 (975)
T KOG0520|consen  639 RNGWTPLHWAAFRGRE-KLVASLIEL-GADPGAVTDPSPETPGGKTAADLARANGHK-------GIAGYLSEK  702 (975)
T ss_pred             CCCCcccchHhhcCHH-HHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhccccc-------chHHHHhhh
Confidence            9999999999999999 999999973 553      444456799999999988853       555555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.36  E-value=0.005  Score=64.84  Aligned_cols=63  Identities=10%  Similarity=-0.005  Sum_probs=36.8

Q ss_pred             HHHHHHHHhcCCCc-----cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH
Q 004286           97 VSMCKCIATADPRL-----IGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus        97 ~~~v~~Ll~~~~~~-----~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      ...+++|.+++...     +...+.---|+||+|+..|..++|.+||+.|+|+.     .+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-----~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-----TKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch-----hcccCCCCcccccc
Confidence            34455555554431     11122234566777777777777777777776666     66777777766665

>smart00248 ANK ankyrin repeats

Probab=96.32  E-value=0.0063  Score=37.69  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=15.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q 004286          118 NETPFFLAARHGHKDAFLCLHYLCASV  144 (763)
Q Consensus       118 g~TpLh~A~~~g~~~~v~~Ll~~ga~~  144 (763)
                      |.||+|+|+..++.+++++|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.86  E-value=0.014  Score=36.03  Aligned_cols=24  Identities=38%  Similarity=0.512  Sum_probs=11.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHh
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRII   68 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g   68 (763)
                      |.||+|+|+..|+.++++.|++.|
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            444555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.50  E-value=0.018  Score=60.83  Aligned_cols=67  Identities=18%  Similarity=-0.001  Sum_probs=55.9

Q ss_pred             HHHHHHHHHcCCCCCCCCc--cccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          131 KDAFLCLHYLCASVDDGYN--YSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       131 ~~~v~~Ll~~ga~~~~~~~--~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      ...+++|.+++.+.| .++  ...+..--|+||||+..|.- ++|.+||+. |+|+..+|..|.||..++..
T Consensus       404 p~~ie~lken~lsgn-f~~~pe~~~~ltsT~LH~aa~qg~~-k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGN-FDVTPEANDYLTSTFLHYAAAQGAR-KCVKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCccc-ccccccccccccchHHHHHHhcchH-HHHHHHHHh-cCCchhcccCCCCccccccc
Confidence            567889999988886 222  23444567999999999999 999999996 79999999999999999883

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.73  E-value=0.91  Score=43.51  Aligned_cols=114  Identities=9%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCC----CCchHH
Q 004286           13 GLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE----RGSTPL   88 (763)
Q Consensus        13 ~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~----~g~TpL   88 (763)
                      .|-.|+..-+.+++..+....         .+-.+++-+|..++..+++.+|+..-       ....+|-    .+.--+
T Consensus       156 sledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f-------~ft~~dv~~~~~~~ydi  219 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF-------NFTKQDVASMEKELYDI  219 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc-------ceecchhhhcCcchhhH
Confidence            345567777777776666552         12357888888888888888888752       1222221    122233


Q ss_pred             HHHHH--cCCHHHHHHHHhcCCCccCC---CCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 004286           89 HIAAG--LGNVSMCKCIATADPRLIGE---RNHENETPFFLAARHGHKDAFLCLHYLCA  142 (763)
Q Consensus        89 h~Aa~--~g~~~~v~~Ll~~~~~~~~~---~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  142 (763)
                      -++..  .-+..+++..+++|-..+|.   +-+.|.|-|--|..+++.+++.+|+++||
T Consensus       220 eY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  220 EYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            34432  22466777777777544543   34568888888888888888888888877

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.67  E-value=4.6  Score=37.77  Aligned_cols=106  Identities=18%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHH----HHHhcCCCccCCCCCCCC
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK----CIATADPRLIGERNHENE  119 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~----~Ll~~~~~~~~~~~~~g~  119 (763)
                      ..++..-.||+..+.|+|++.-+.         +..  .+-.+-+-+|....+.++..    ++.++.-.    .  .+.
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qn---------L~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~----~--~~~  137 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQN---------LHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS----E--HNE  137 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhc---------cCC--CCchhhhhhhhhccchhHHHHHHHHHHhhccc----c--ccc
Confidence            456777788888888888888432         211  22345666777777766521    22222111    1  122


Q ss_pred             -------hHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHH
Q 004286          120 -------TPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH  178 (763)
Q Consensus       120 -------TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~  178 (763)
                             --|..|+..|-...+...+++|.+++           .++|-.|+.+++. .++.+++.
T Consensus       138 d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-----------~~vls~Av~ynhR-kIL~yfi~  191 (192)
T PF03158_consen  138 DPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-----------IIVLSQAVKYNHR-KILDYFIR  191 (192)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-----------HHHHHHHHHhhHH-HHHHHhhc
Confidence                   22678888999998888888888775           2889999999888 88877764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.84  E-value=1.4  Score=35.21  Aligned_cols=49  Identities=20%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcc
Q 004286          120 TPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE  181 (763)
Q Consensus       120 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~  181 (763)
                      .-+..|+.+|+.|+++.+++.+. ++           ...+..|+...+. |++++|++++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~~-----------~~~l~~AI~~H~n-~i~~~l~~~y~   56 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-PD-----------NDCLEYAIKSHNN-EIADWLIENYN   56 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-cH-----------HHHHHHHHHHhhH-HHHHHHHHhcC
Confidence            34677777777777777775441 11           3457777777777 77777777643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.74  E-value=1.8  Score=34.58  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhcc
Q 004286          457 ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTA  513 (763)
Q Consensus       457 ~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~  513 (763)
                      ..-+..|+..|+.||++.+++....     +   ...+..|+.+.+-+++++|++.-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4568999999999999999985311     1   56799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=80.39  E-value=9.9  Score=36.75  Aligned_cols=117  Identities=11%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC----CChHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE----NETPF  122 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~----g~TpL  122 (763)
                      -.|--|+...+.+-+.-++..-             ..-.+++-+|...+..+++-+|+.+=.  ...+|.-    +.--+
T Consensus       155 isledAV~AsN~~~i~~~VtdK-------------kdA~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydi  219 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK-------------KDAHQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDI  219 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch-------------HHHHHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhH
Confidence            3455677777766666555421             124689999998899999999997522  1222211    22233


Q ss_pred             HHHHH--cCCHHHHHHHHHcCC-CCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccc
Q 004286          123 FLAAR--HGHKDAFLCLHYLCA-SVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEK  182 (763)
Q Consensus       123 h~A~~--~g~~~~v~~Ll~~ga-~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~  182 (763)
                      -++..  ..+..++++.+++|- ++|  ....+-..|.|-|--|+.+++. +++.+||+ +|+
T Consensus       220 eY~LS~h~a~~kvL~~Fi~~Glv~vN--~~F~~~NSGdtMLDNA~Ky~~~-emi~~Llk-~GA  278 (284)
T PF06128_consen  220 EYLLSEHSASYKVLEYFINRGLVDVN--KKFQKVNSGDTMLDNAMKYKNS-EMIAFLLK-YGA  278 (284)
T ss_pred             HHHHhhcCCcHHHHHHHHhccccccc--hhhhccCCcchHHHhHHhcCcH-HHHHHHHH-cCc
Confidence            34433  446788899998875 333  1224567899999999999999 99999999 586

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	763
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
           +G T LH+A  +G  E+V+ L+    +      +   D+ G TPLH+AA  G++ + K +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 104 --ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
             A AD   +  ++    TP  LAAR+GH +    L    A V+     ++ KNG T LH
Sbjct: 55  LEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLH 106
Query: 162 YA 163
            A
Sbjct: 107 LA 108

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 1   MATGIDIDQLKKG----LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
           MA G D++   K     L  +A +G     EV+   G D    +    + G T LH+A  
Sbjct: 22  MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 77
Query: 55  DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER 114
           +G  EIVE L++   +      +   D+ G TPLH+AA  G++ + + +  A    +  +
Sbjct: 78  EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQ 130
Query: 115 NHENETPFFLAARHGHKD 132
           +   +TPF LA R GH+D
Sbjct: 131 DKFGKTPFDLAIREGHED 148

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 10  LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
           L K L ++A  G+ +EV  +   G D    +    + G T LH+A  +G  EIVE L++ 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLA 125
             +      +   D+ G TPLH+AA  G++ + + +  A AD   +  ++ +  TP  LA
Sbjct: 70  GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 120
Query: 126 ARHGH 130
           AR GH
Sbjct: 121 AREGH 125

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 10  LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
           L K L ++A  G+ +EV  +   G D    +    + G T LH+A  +G  EIVE L++ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR 127
             +      +   D+ G TPLH+AA  G++ + + +  A    +  ++ +  TP  LAAR
Sbjct: 58  GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 110
Query: 128 HGH 130
            GH
Sbjct: 111 EGH 113

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 25  EVVENYGKDDRIHE-----ARITRS---GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV 76
           E  EN G  DR+ +     A +  S   G T LH+A  +G +E+V+ L+       Q   
Sbjct: 10  EAAEN-GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL------SQGAD 62
Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAF 134
               D  G TPLH+AA  G+  + K + +  ADP     ++ + +TP  LAA +GHK+  
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV 119
Query: 135 LCL 137
             L
Sbjct: 120 KLL 122

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           T +G T LHIA  +G  E V  L+    E  Q  + K    +G TPLH+AA  G V + +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLE--KEASQACMTK----KGFTPLHVAAKYGKVRVAE 163
Query: 102 CIATAD--PRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI 159
            +   D  P   G+      TP  +A  H + D    L         G  +S   NG T 
Sbjct: 164 LLLERDAHPNAAGKN---GLTPLHVAVHHNNLDIVKLL-----LPRGGSPHSPAWNGYTP 215
Query: 160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA 204
           LH A +    V++A  ++  Y    N  + +GV+PLHL A + +A
Sbjct: 216 LHIA-AKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHA 258

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 10  LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
           L K L ++A  G+ +EV  +   G D   ++      G T LH+A + G  EIVE L+R 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAYD----HYGRTPLHMAAAVGHLEIVEVLLRN 57
Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
             +   +      D  G+TPLH+AA LG++ + + +    AD   +  ++    TP +LA
Sbjct: 58  GADVNAV------DTNGTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLA 108
Query: 126 ARHGH 130
           A  GH
Sbjct: 109 AYWGH 113

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
           +G T LH+A  +G  E+V+ L+    +      +   D+ G TPLH+AA  G++ + K +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 104 --ATADPRLIGERNHENETPFFLAARHGH 130
             A AD   +  ++    TP  LAAR+GH
Sbjct: 55  LEAGAD---VNAKDKNGRTPLHLAARNGH 80

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 25/113 (22%)
Query: 31  GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
           G+DD   E RI  + G           T LH+A S+G  EIVE L++   +      +  
Sbjct: 25  GQDD---EVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD------VNA 75
Query: 80  GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
            D  G TPLH+AA  G++ + + +    AD   +   +++  TP  LAA++GH
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGH 125

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
           A  GK  E+ E+   D  +   R  +   TALH A S G  EIVE L+++   +++K   
Sbjct: 14  AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75  KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
                 D+ G +PLHIAA  G   + K +     + +   N    TP  + A+++ H+ A
Sbjct: 70  ------DDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHL---YEKLVNFVNE 189
            + L       + G N   + + E T +H A +         ++IH+   Y+   N  + 
Sbjct: 123 VMLL-------EGGANPDAKDHYEATAMHRAAAKGN-----LKMIHILLYYKASTNIQDT 170
Query: 190 RGVSPLHL 197
            G +PLHL
Sbjct: 171 EGNTPLHL 178

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
           A  GK  E+ E+   D  +   R  +   TALH A S G  EIVE L+++   +++K   
Sbjct: 15  AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 70
Query: 75  KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
                 D+ G +PLHIAA  G   + K +     + +   N    TP  + A+++ H+ A
Sbjct: 71  ------DDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIA 123
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHL---YEKLVNFVNE 189
            + L       + G N   + + E T +H A +         ++IH+   Y+   N  + 
Sbjct: 124 VMLL-------EGGANPDAKDHYEATAMHRAAAKGN-----LKMIHILLYYKASTNIQDT 171
Query: 190 RGVSPLHL 197
            G +PLHL
Sbjct: 172 EGNTPLHL 179

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40  RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
           +IT  G T LH+AV     E+ + L+      +    ++I D+    PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
            + +       +  ++ +  TP F A   GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 36  IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG 95
           I++ R  +SGGTALH+A + G  E+++ L++  ++      + I D  G TPLH AA  G
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWG 243
Query: 96  NVSMCKCI 103
               C+ +
Sbjct: 244 KEEACRIL 251

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40  RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
           +IT  G T LH+AV     E+ + L+      +    ++I D+    PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
            + +       +  ++ +  TP F A   GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40  RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
           +IT  G T LH+AV     E+ + L+      +    ++I D+    PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
            + +       +  ++ +  TP F A   GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
           A  GK +E+ E    D  +   R  +   TALH A S G  EIVE L+++   +++K   
Sbjct: 14  AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75  KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
                 D+ G +PLHIAA  G   + K +       +   N    TP  + A+++ H+ A
Sbjct: 70  ------DDAGWSPLHIAASAGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV 192
            + L       + G N   + + + T +H A +          I+  Y+   N  +  G 
Sbjct: 123 VMLL-------EGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGN 173
Query: 193 SPLHL 197
           +PLHL
Sbjct: 174 TPLHL 178

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG-----NVSMCK 101
           T LH+AV   Q EI E L+    + +      + D RG+TPLH+A   G      V    
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
           C       ++   N+   T   LA+ HG    +L +  L  S+    N     NG T LH
Sbjct: 98  CTTPHLHSILKATNYNGHTCLHLASIHG----YLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 162 YAISGYYFVDLAF-QIIHLYEKL---VNFVNERGVSPLHLLATKPNAFRSGSHLGLCT 215
            A      VDL    ++ L  K    VN V  +G SP  L   +P+  R    LG  T
Sbjct: 154 LA------VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-RIQQQLGQLT 204

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
           A  GK +E+ E    D  +   R  +   TALH A S G  EIVE L+++   +++K   
Sbjct: 14  AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75  KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
                 D+ G +PLHIAA  G   + K +       +   N    TP  + A+++ H+ A
Sbjct: 70  ------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV 192
            + L       + G N   + + + T +H A +          I+  Y+   N  +  G 
Sbjct: 123 VMLL-------EGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGN 173
Query: 193 SPLHL 197
           +PLHL
Sbjct: 174 TPLHL 178

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC-----K 101
           T LH+AV   Q EI E L+    + +      + D RG+TPLH+A   G ++        
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
           C       ++   N+   T   LA+ HG    +L +  L  S+    N     NG T LH
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHG----YLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 162 YAISGYYFVDLAF-QIIHLYEKL---VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGI 217
            A      VDL    ++ L  K    VN V  +G SP  L   +P+  R    LG  T  
Sbjct: 157 LA------VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-RIQQQLGQLT-- 207
Query: 218 IYHCISVDKLQEETSYD 234
           + +   + + ++E SYD
Sbjct: 208 LENLQMLPESEDEESYD 224

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 31  GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
           G+DD   E RI  + G           T LH+ V++G  EI+E L++   +      +  
Sbjct: 25  GQDD---EVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD------VNA 75
Query: 80  GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
            D+ G TPLH+AA  G++ + + +    AD   +   +++  TP  LAA  GH
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGH 125

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 56  GQEEIVEDLVRIIHEKQQLKV----------LKIGDERGSTPLHIAAGLGNVSMCKCIAT 105
           G  E ++D+     E   + V          L  GD+ G +PLH A   G  ++ + +  
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 106 ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS 165
              R I   N  ++TP  LAA HGH+D    L    A ++     +  ++G   LHYA  
Sbjct: 61  RGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYAC- 113
Query: 166 GYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
            ++  D   + +     LV+  N+ G  P+
Sbjct: 114 -FWGQDQVAEDLVANGALVSICNKYGEMPV 142

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 10  LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
           L K L ++A  G+ +EV  +   G D    +A    SG T LH+A  +G  EIVE L++ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
             +   +      D  G TPL +AA  G++ + + +    AD   +   + E  TP  LA
Sbjct: 70  GADVNAV------DHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLA 120
Query: 126 ARHGH 130
           A  GH
Sbjct: 121 AMFGH 125

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC 136
           L  GD+ G +PLH A   G  ++ + +     R I   N  ++TP  LAA HGH+D    
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
           L    A ++     +  ++G   LHYA   ++  D   + +     LV+  N+ G  P+
Sbjct: 86  LLQYKADIN-----AVNEHGNVPLHYAC--FWGQDQVAEDLVANGALVSICNKYGEMPV 137

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 10  LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
           L K L ++A  G+ +EV  +   G D    +A    SG T LH+A + G  EIVE L++ 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDA----SGLTPLHLAATYGHLEIVEVLLKH 69
Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
             +   + ++      GSTPLH+AA +G++ + + +    AD   +   +   +TP  LA
Sbjct: 70  GADVNAIDIM------GSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLA 120
Query: 126 ARHGH 130
           A  GH
Sbjct: 121 AIMGH 125

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 10  LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
           L K L ++A  G+ +EV         ++ A +   G T LH+A   G  EIVE L++   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAADVV--GWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 70  EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAAR 127
           +      +   D  GSTPLH+AA  G++ + + +    AD   +  ++    TP  LAA 
Sbjct: 72  D------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAAN 122
Query: 128 HGH 130
            GH
Sbjct: 123 RGH 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	763
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	5e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	6e-15
2rfa_A	232	Transient receptor potential cation channel subfa	6e-13
2rfa_A	232	Transient receptor potential cation channel subfa	3e-12
2rfa_A	232	Transient receptor potential cation channel subfa	6e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	9e-14
2etb_A	256	Transient receptor potential cation channel subfam	3e-12
2etb_A	256	Transient receptor potential cation channel subfam	7e-12
2etb_A	256	Transient receptor potential cation channel subfam	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 33/196 (16%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHE 70
           L ++ M+ ++ +V E   +      + +    + G   LH +VS    EI   L   + +
Sbjct: 6   LHQACMENEFFKVQELLHSKPSL--LLQK--DQDGRIPLHWSVSFQAHEITSFL---LSK 58

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC----IATADPRLIGERNHENETPFFLAA 126
            + + +    D+ G TP HIA  +GN+ + K         D   + +  ++  T   LA 
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD---LNKITNQGVTCLHLAV 115

Query: 127 RHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLV 184
                +   FL  +   ASV       + K  +  LH A +    + L   +        
Sbjct: 116 GKKWFEVSQFLIEN--GASVR-----IKDKFNQIPLHRA-ASVGSLKLIELLC---GLGK 164

Query: 185 NFVNER---GVSPLHL 197
           + VN +   G +PL  
Sbjct: 165 SAVNWQDKQGWTPLFH 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 45  GGTALHIAVSDGQ-EEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
               LH A  + +  ++ E L      + +K         D+ G  PLH +       + 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK---------DQDGRIPLHWSVSFQAHEIT 52

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
             + +   +  L    +    TPF +A   G+ +    L    L   ++          G
Sbjct: 53  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQG 107

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
            T LH A  G  + +++       + L      V   ++    PLH 
Sbjct: 108 VTCLHLA-VGKKWFEVS-------QFLIENGASVRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 36/187 (19%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI-----IHEKQQLKV 76
           E+     +  ++  + +     SG T  HIA S G  E+V+ L        +++      
Sbjct: 50  EITSFLLSKMENVNLDDYP-DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI----- 103

Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA- 133
                 +G T LH+A G     + + +    A    +  ++  N+ P   AA  G     
Sbjct: 104 ----TNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLI 156

Query: 134 -FLCLHYLCASVDDGYNY--SRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER 190
             LC          G +    + K G T L +A       D A  ++  Y    + V+ +
Sbjct: 157 ELLCGL--------GKSAVNWQDKQGWTPLFHA-LAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 191 GVSPLHL 197
           G     +
Sbjct: 208 GAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
           T  G T LH+AV     E+ + L+     +  K         D+    PLH AA +G++ 
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK---------DKFNQIPLHRAASVGSLK 154

Query: 99  MCKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
           + + +       +  ++ +  TP F A   GH DA   L +    A  D          G
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL-VEKYGAEYD-----LVDNKG 208

Query: 157 ETILHYA 163
                 A
Sbjct: 209 AKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 1e-08
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 19/98 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR----IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
               LH A S G  +++E L       ++ +         D++G TPL  A   G+    
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQ---------DKQGWTPLFHALAEGHGDAA 190

Query: 101 KC-IAT--ADPRLIGERNHENETPFFLAARHGHKDAFL 135
              +    A+       +++      +A     K  FL
Sbjct: 191 VLLVEKYGAE---YDLVDNKGAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 24/100 (24%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
           G  +    K     L ++A  G   +++E     GK   ++     + G T L  A+++G
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGS-LKLIELLCGLGKSA-VNWQ--DKQGWTPLFHALAEG 185

Query: 57  QEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAA 92
             +    LV                   D +G+    +A 
Sbjct: 186 HGDAAVLLVEKYGAEYDLV---------DNKGAKAEDVAL 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.9 bits (188), Expect = 9e-16
 Identities = 34/149 (22%), Positives = 52/149 (34%), Gaps = 32/149 (21%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
            V +        D +        G T L +A     E ++EDL+     ++         
Sbjct: 72  GVFQILIRNRATD-LDAR--MHDGTTPLILAARLAVEGMLEDLINSHADVNAV------- 121

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--F 134
             D+ G + LH AA + NV     +    A+      +N+  ETP FLAAR G  +    
Sbjct: 122 --DDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKV 176

Query: 135 LCLHYLCASVDDGYNYSRRKNGETILHYA 163
           L  H+  A+ D                 A
Sbjct: 177 LLDHF--ANRD-----ITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.3 bits (176), Expect = 4e-14
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 41/167 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR----IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           G T LH AVS   + + + L+R     +  +            G+TPL +AA L    M 
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDAR---------MHDGTTPLILAARLAVEGML 108

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
           + +    AD   +   +   ++    AA   + DA   L  +   A+ D      +    
Sbjct: 109 EDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKD-----MQNNRE 158

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           ET L  A +     + A       + L       +  +     P  +
Sbjct: 159 ETPLFLA-AREGSYETA-------KVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.7 bits (172), Expect = 1e-13
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 35/166 (21%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
           R+G TALH+A    + +  + L+      + +         D  G TPLH A       +
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASADANIQ---------DNMGRTPLHAAVSADAQGV 73

Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            + +       +  R H+  TP  LAAR   +     L      A V+     +    G+
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVN-----AVDDLGK 126

Query: 158 TILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           + LH+A +    VD A         L       +  N R  +PL L
Sbjct: 127 SALHWA-AAVNNVDAA-------VVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 8e-11
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR---IIHEKQQLKVLK 78
            ++E   N   D  ++       G +ALH A +    +    L++       +       
Sbjct: 106 GMLEDLINSHAD--VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ------- 154

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--F 134
             + R  TPL +AA  G+    K +    A+       +H +  P  +A    H D    
Sbjct: 155 --NNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 135 LCLH 138
           L  +
Sbjct: 210 LDEY 213

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 51/203 (25%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
            +V+    +G D  +H     + G   LH A S G  E+ E L++    ++         
Sbjct: 72  RIVQLLLQHGAD--VHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNAM------- 120

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD--AF 134
             D    TPLH AA    V +C  + +  AD       N   ++   +A     ++   +
Sbjct: 121 --DLWQFTPLHEAASKNRVEVCSLLLSHGAD---PTLVNCHGKSAVDMAPTPELRERLTY 175

Query: 135 L----CLHYLCASVD----------DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLY 180
                 L       D          +  N+ + ++ ET LH A++  +      Q+    
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK--QVA--- 230

Query: 181 EKL------VNFVNERGVSPLHL 197
           E L      VN  N+  ++PLH+
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHV 253

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 3e-13
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 33/160 (20%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI--- 67
           L ++A  G   +++        +   H +       T LH+A    +  IV+ L++    
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVN--CHAS--DGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLA 125
           +H K         D+ G  PLH A   G+  + +  +   A    +   +    TP   A
Sbjct: 84  VHAK---------DKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLHEA 131

Query: 126 ARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYA 163
           A     +    L  H   A            +G++ +  A
Sbjct: 132 ASKNRVEVCSLLLSH--GADPT-----LVNCHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 1e-12
 Identities = 38/172 (22%), Positives = 59/172 (34%), Gaps = 43/172 (25%)

Query: 45  GGTALHIAVSDG-QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
               L  A   G +E+++  L  +    H           D R STPLH+AAG   V + 
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHAS---------DGRKSTPLHLAAGYNRVRIV 74

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
           + +    AD   +  ++     P   A  +GH +    L  H   A V+     +     
Sbjct: 75  QLLLQHGAD---VHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVN-----AMDLWQ 124

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL-------VNFVNERGVSPLHLLATK 201
            T LH A +    V++          L          VN  G S + +  T 
Sbjct: 125 FTPLHEA-ASKNRVEVC--------SLLLSHGADPTLVNCHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.1 bits (139), Expect = 7e-09
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 41/173 (23%)

Query: 4   GIDIDQLKKG---LFKSAMKGKWN--EVVE---NYGKDDRIHEARITRSGGTALHIAVSD 55
            I+  Q +     L  +         +V E     G +  ++E    +   T LH+A   
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN--VNEK--NKDFMTPLHVAAER 257

Query: 56  GQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRL 110
              +++E L +    ++           D  G T LH AA  G++  C+ + +  +D   
Sbjct: 258 AHNDVMEVLHKHGAKMNAL---------DSLGQTALHRAALAGHLQTCRLLLSYGSD--- 305

Query: 111 IGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA 163
               + +  T   +      +   +        +          + +  L  A
Sbjct: 306 PSIISLQGFTAAQMGNEAVQQ---ILSES--TPMRT-------SDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 37/132 (28%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIAT------ADPRLIGERNHENETPFFLAARHGHKDA- 133
            E     L  AA  GN    + +         +       +    TP  LAA +      
Sbjct: 21  GEYKKDELLEAARSGN---EEKLMALLTPLNVN---CHASDGRKSTPLHLAAGYNRVRIV 74

Query: 134 -FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL-------VN 185
             L  H   A V      ++ K G   LH A   Y   ++         +L       VN
Sbjct: 75  QLLLQH--GADVH-----AKDKGGLVPLHNA-CSYGHYEVT--------ELLLKHGACVN 118

Query: 186 FVNERGVSPLHL 197
            ++    +PLH 
Sbjct: 119 AMDLWQFTPLHE 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 3e-15
 Identities = 52/214 (24%), Positives = 75/214 (35%), Gaps = 52/214 (24%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
               +   K G   L  +       ++V+     G     H      +G T LHIA    
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNN-LDIVKLLLPRGGS--PHSP--AWNGYTPLHIAAKQN 223

Query: 57  QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLI 111
           Q E+   L++     + +           +G TPLH+AA  G+  M   + +  A+    
Sbjct: 224 QVEVARSLLQYGGSANAE---------SVQGVTPLHLAAQEGHAEMVALLLSKQAN---G 271

Query: 112 GERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF 169
              N    TP  L A+ GH      L  H     VD     +  + G T LH A S Y  
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVD-----ATTRMGYTPLHVA-SHYGN 323

Query: 170 VDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           + L        + L      VN   + G SPLH 
Sbjct: 324 IKLV-------KFLLQHQADVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.0 bits (188), Expect = 1e-14
 Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 43/177 (24%)

Query: 37  HEARI---TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHI 90
             A          T LH+A   G  E+ + L++    ++ K          +   TPLH 
Sbjct: 36  RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK---------AKDDQTPLHC 86

Query: 91  AAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDD 146
           AA +G+ +M K +    A+            TP  +AAR GH +    L      AS   
Sbjct: 87  AARIGHTNMVKLLLENNAN---PNLATTAGHTPLHIAAREGHVETVLALLEK--EASQA- 140

Query: 147 GYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
                  K G T LH A + Y  V +A       E L       N   + G++PLH+
Sbjct: 141 ----CMTKKGFTPLHVA-AKYGKVRVA-------ELLLERDAHPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 42/170 (24%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
             SG T LH+A   G   IV++L++     +           + +  TPLH+AA  G+  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVS---------NVKVETPLHMAARAGHTE 61

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRR 153
           + K +    A    +  +  +++TP   AAR GH +    +  L    A+ +        
Sbjct: 62  VAKYLLQNKAK---VNAKAKDDQTPLHCAARIGHTN---MVKLLLENNANPN-----LAT 110

Query: 154 KNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
             G T LH A +    V+           L         + ++G +PLH+
Sbjct: 111 TAGHTPLHIA-AREGHVETV-------LALLEKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.0 bits (175), Expect = 4e-13
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 40/180 (22%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
           G   +    +G   L  +A +G   E+V    +   +   +     +SG T LH+   +G
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGH-AEMVALLLSKQAN--GNLG--NKSGLTPLHLVAQEG 289

Query: 57  QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLI 111
              + + L++    +               G TPLH+A+  GN+ + K +    AD   +
Sbjct: 290 HVPVADVLIKHGVMVDAT---------TRMGYTPLHVASHYGNIKLVKFLLQHQAD---V 337

Query: 112 GERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNGETILHYAISGYY 168
             +     +P   AA+ GH D    +  L    AS +         +G T L  A    Y
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTD---IVTLLLKNGASPN-----EVSSDGTTPLAIAKRLGY 389

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 9e-13
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
           TR G T LH+A   G  ++V+ L++    ++ K          + G +PLH AA  G+  
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK---------TKLGYSPLHQAAQQGHTD 358

Query: 99  MCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR-KN 155
           +    +   A      E + +  TP  +A R G+         L    D+        K+
Sbjct: 359 IVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYIS---VTDVLKVVTDETSFVLVSDKH 412

Query: 156 GETILHYA 163
             +     
Sbjct: 413 RMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 4e-06
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 24/109 (22%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
           G+ +D   + G   L  ++  G   ++V+    +  D  ++    T+ G + LH A   G
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNI-KLVKFLLQHQAD--VNAK--TKLGYSPLHQAAQQG 355

Query: 57  QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
             +IV  L++     +E             G+TPL IA  LG +S+   
Sbjct: 356 HTDIVTLLLKNGASPNEV---------SSDGTTPLAIAKRLGYISVTDV 395

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 43/177 (24%)

Query: 41  ITRSGGTALHIAVSDGQEEIVEDLVRI-------IHEKQQLKVLKIGDERGSTPLHIAAG 93
           +T  G + LH+A+   ++ +  +++R        ++ +         +    TPLH+A  
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ---------NNLQQTPLHLAVI 54

Query: 94  LGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL---CASVDDGY 148
                + + +  A  D      R+    TP  LA   G       +  L   C +     
Sbjct: 55  TNQPEIAEALLGAGCD---PELRDFRGNTPLHLACEQGCLA---SVGVLTQSCTTPHLHS 108

Query: 149 NYSRR-KNGETILHYAISGYYFVDLAFQIIHLYEKLVNF---VNER----GVSPLHL 197
                  NG T LH A S + ++ +        E LV+    VN +    G + LHL
Sbjct: 109 ILKATNYNGHTCLHLA-SIHGYLGIV-------ELLVSLGADVNAQEPCNGRTALHL 157

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.4 bits (181), Expect = 9e-15
 Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 39/169 (23%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR---IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
             T LH+AV   Q EI E L+        +         D RG+TPLH+A   G ++   
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPELR---------DFRGNTPLHLACEQGCLASVG 95

Query: 102 CI--ATADPRL---IGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
            +  +   P L   +   N+   T   LA+ HG+      L      A V    N     
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL--GADV----NAQEPC 149

Query: 155 NGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           NG T LH A       DL          L      VN V  +G SP  L
Sbjct: 150 NGRTALHLA-VDLQNPDLV-------SLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
              G T LH+A   G    V  L +         +LK  +  G T LH+A+  G + + +
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 102 CIAT--ADPRLIGERNHEN-ETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
            + +  AD   +  +   N  T   LA    + D    L      A V+          G
Sbjct: 135 LLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVN-----RVTYQG 184

Query: 157 ETILHYA 163
            +     
Sbjct: 185 YSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.7 bits (143), Expect = 8e-10
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 17/95 (17%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
            +G TALH+AV     ++V  L++    ++             +G +P  +  G  +  +
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRV---------TYQGYSPYQLTWGRPSTRI 199

Query: 100 CKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
            + +   T +     +   E+E            +
Sbjct: 200 QQQLGQLTLE---NLQMLPESEDEESYDTESEFTE 231

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 4e-15
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 44/185 (23%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---------NYGKDDRIHEARITRSGGTALH 50
           G D+++    G     ++A+ GK  + ++         N  +  +  + R+ + G TAL 
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGK-VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 51  IAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT- 105
            A   G  E+++ L+      ++           D  G   L  A    + S  + I   
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNAC---------DNMGRNALIHALLSSDDSDVEAITHL 204

Query: 106 -----ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGET 158
                AD   +  R    +TP  LA    H      L        ++         +G+T
Sbjct: 205 LLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEIN-----DTDSDGKT 255

Query: 159 ILHYA 163
            L  A
Sbjct: 256 ALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 41/172 (23%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH AV   +E+IVE L+R       +          + G+TP  +AA  G+V + K
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLR---------KKNGATPFLLAAIAGSVKLLK 89

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNY-----SR 152
             ++  AD   + E +    T F  AA +G   A  FL      A+V+            
Sbjct: 90  LFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERL 144

Query: 153 RKNGETILHYAISGYYFVDLAFQIIHLYEKL-------VNFVNERGVSPLHL 197
           RK G T L  A +    V++        + L       VN  +  G + L  
Sbjct: 145 RKGGATALMDA-AEKGHVEVL-------KILLDEMGADVNACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 4e-11
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 25/126 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
               L  AV +   ++V+ L+     ++ +         +E G TPLH A  +    + +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------EEEGGWTPLHNAVQMSREDIVE 56

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
             +   AD      R     TPF LAA  G              A V+          G 
Sbjct: 57  LLLRHGAD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVN-----ECDFYGF 106

Query: 158 TILHYA 163
           T    A
Sbjct: 107 TAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 24/109 (22%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI-------IHEKQQLKVLKIGDERGSTPLHIAAGL 94
              G  AL  A+    +  VE +  +       ++ +          ERG TPL +A   
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR---------GERGKTPLILAVEK 229

Query: 95  GNVSMCKCI---ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLH 138
            ++ + + +      +   I + + + +T   LA     K     LC  
Sbjct: 230 KHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.4 bits (184), Expect = 5e-15
 Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 42/191 (21%)

Query: 25  EVVENYGKDDRIHEARI---TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
             V       +     +        T LH+AV      +V  LV                
Sbjct: 23  PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL------- 75

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCI----ATADPRLIGERNHENETPFFLAARHGHKDA- 133
             D  G T  H+A    + +  + +    A      +  RN++  T   +A     ++  
Sbjct: 76  --DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETV 132

Query: 134 -FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNF 186
             L      A +    +    K+G + L +A      + +        + L      VN 
Sbjct: 133 QLLLER--GADI----DAVDIKSGRSPLIHA-VENNSLSMV-------QLLLQHGANVNA 178

Query: 187 VNERGVSPLHL 197
               G S LH 
Sbjct: 179 QMYSGSSALHS 189

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 26/130 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI-------IHEKQQLKVLKIGDERGSTPLHIAAGLGNV 97
           G T LHIAV  G    V  LV +       +            +    TPLH+A      
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY---------NNLRQTPLHLAVITTLP 59

Query: 98  SMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRR 153
           S+ + + T  A        +   +T   LA  H        L      A        +R 
Sbjct: 60  SVVRLLVTAGAS---PMALDRHGQTAAHLACEHRSPTCLRALLDS--AAPGTLDLE-ARN 113

Query: 154 KNGETILHYA 163
            +G T LH A
Sbjct: 114 YDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.9 bits (162), Expect = 3e-12
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 38  EARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGL 94
           +A   +SG + L  AV +    +V+ L++    ++ +            GS+ LH A+G 
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ---------MYSGSSALHSASGR 193

Query: 95  GNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
           G + + + +    AD      +N  N+TP  +A      D
Sbjct: 194 GLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVID 230

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
              G TALH+AV+   +E V+ L+     I             + G +PL  A    ++S
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAV--------DIKSGRSPLIHAVENNSLS 164

Query: 99  MCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
           M + +    A+   +  + +   +    A+  G       L      A         +  
Sbjct: 165 MVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS--GADSS-----LKNC 214

Query: 155 NGETILHYA 163
           + +T L  A
Sbjct: 215 HNDTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.2 bits (142), Expect = 1e-09
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 22/128 (17%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIAT------ADPRLIGERNHENETPFFLAARHGHKDA- 133
           DE G TPLHIA   GN+     +         +   +   N+  +TP  LA         
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVV 62

Query: 134 -FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH---LYEKLVNFVNE 189
             L      AS       +  ++G+T  H A   +        ++         +   N 
Sbjct: 63  RLLVTA--GASPM-----ALDRHGQTAAHLA-CEHRSPTCLRALLDSAAPGTLDLEARNY 114

Query: 190 RGVSPLHL 197
            G++ LH+
Sbjct: 115 DGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 4   GIDIDQ--LKKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSD 55
           G DID   +K G   L  +        +V+    +G +  ++      SG +ALH A   
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNS-LSMVQLLLQHGAN--VNAQ--MYSGSSALHSASGR 193

Query: 56  GQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
           G   +V  LVR       K         +    TPL +A     + + + 
Sbjct: 194 GLLPLVRTLVRSGADSSLK---------NCHNDTPLMVARSRRVIDILRG 234

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 75.2 bits (185), Expect = 5e-15
 Identities = 28/134 (20%), Positives = 39/134 (29%), Gaps = 30/134 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGN-------- 96
           G   L +A    Q  IV+ L   +    Q   +   D  G+T LH    + +        
Sbjct: 148 GELPLSLAACTNQLAIVKFL---LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204

Query: 97  -VSMCKCIATADPRLIGE------RNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYN 149
             SM   I     +L          N +  TP  LAA  G         Y+         
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL---AYIL-------- 253

Query: 150 YSRRKNGETILHYA 163
             R  +     H A
Sbjct: 254 -QREIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 49/228 (21%)

Query: 14  LFKSAMKGKWN------EVVENYGKDDRIHEARITRSGGTALHIAV---SDGQEEIVEDL 64
           +F +  +            ++   K     E +   +G T L  A+    +GQ + +  L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 65  VRIIHEKQQLKVL-----KIGDERGSTPLHIAAGLGNVSMCK-------------CIATA 106
           + +  +   LK            +G T LHIA    N+++                    
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 107 DPRLIGERNHENETPFFLAARHGHKDA--FLCLH-YLCASVDDGYNYSRRKNGETILHYA 163
                    +  E P  LAA         FL  + +  A +      +R   G T+LH  
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS-----ARDSVGNTVLHAL 191

Query: 164 --------------ISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
                          S Y  + +    +H   KL    N +G++PL L
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 36/177 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEK-----QQLKVLKIGDERGSTPLHIAAGLGN 96
           G TALHIA+      +V  LV     +         +    + G   G  PL +AA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 97  VSMCKC-----IATADPRLIGERNHENETPFFLAARHGHKD---------AFLCLHYLCA 142
           +++ K         AD      R+    T                      +  +  L A
Sbjct: 161 LAIVKFLLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 143 SVDDGYNYSRRKN--GETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
            +          N  G T L  A +    + +     ++ ++ ++          H 
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALA-ASSGKIGVLA---YILQREIH-----EPECRHA 265

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVE-----DLV 65
           L  +A   +   +V+             AR    G T LH  V      +        + 
Sbjct: 152 LSLAACTNQL-AIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 66  RIIHEK-----QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET 120
             I          LK+ +I + +G TPL +AA  G + +          ++ +R      
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY-------IL-QREIHEPE 261

Query: 121 PFFLAARHGHKD 132
               AA H H  
Sbjct: 262 CRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 53/200 (26%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRII--HEKQQLKVLKIGDERGSTPLHIA---AGLGNV 97
                ++  AV+    + +E L+  +   +K+         E G T L  A      G  
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 98  SMCKCIA------TADPRLIG----ERNHENETPFFLAARHGHKDA--FLCLHYLCASVD 145
                +        +  + +     +  ++ +T   +A    +      L  +   A V 
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQ 128

Query: 146 ---------DGYNYSRRKNGETILHYAIS-------------GYYFVDLAFQIIHLYEKL 183
                              GE  L  A                +   D            
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------------ 176

Query: 184 VNFVNERGVSPLHLLATKPN 203
           ++  +  G + LH L    +
Sbjct: 177 ISARDSVGNTVLHALVEVAD 196

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.8 bits (182), Expect = 6e-15
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVR---IIHEK----QQLKVLKIGDERGSTPLHIAAGL 94
              G TALHIAV +    +V  L+     +  +                G  PL  AA +
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 95  GNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYN--- 149
           G+  + + +    AD   I  ++    T   +     +K     ++ L  S D G +   
Sbjct: 132 GSEEIVRLLIEHGAD---IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188

Query: 150 --YSRRKNGETILHYA 163
                   G T    A
Sbjct: 189 LELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 47/214 (21%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR---- 66
           L  +A +     + +     G +  +H+      G TALHIA      E    L+     
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCE--VHQR--GAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 67  IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC------------KCIATADPRLIGER 114
           ++ E    +        G T LHIA    NV++             +   +         
Sbjct: 63  LVFEPMTSE-----LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 115 NHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDL 172
            +  E P   AA  G ++    L  H   A +      ++   G T+LH  I        
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEH--GADIR-----AQDSLGNTVLHILIL-QPNKTF 169

Query: 173 AFQIIHL---------YEKLVNFVNERGVSPLHL 197
           A Q+ +L          + L    N +G++P  L
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 45/184 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI-----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
             + L +A  +   + +  L+       +H++            G T LHIAA   N+  
Sbjct: 3   WESPLLLAAKENDVQALSKLL-KFEGCEVHQR---------GAMGETALHIAALYDNLEA 52

Query: 100 CKCI----ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVD-------- 145
              +           +    +E +T   +A  + + +    L      ASV         
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR--GASVSARATGSVF 110

Query: 146 DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHLLA 199
               ++    GE  L +A +     ++          L      +   +  G + LH+L 
Sbjct: 111 HYRPHNLIYYGEHPLSFA-ACVGSEEIV-------RLLIEHGADIRAQDSLGNTVLHILI 162

Query: 200 TKPN 203
            +PN
Sbjct: 163 LQPN 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 28/120 (23%), Positives = 36/120 (30%), Gaps = 25/120 (20%)

Query: 29  NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI-----IHEKQQLKVLKIGDER 83
             G         +   G   L  A   G EEIV  L  I     I  +         D  
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL--IEHGADIRAQ---------DSL 153

Query: 84  GSTPLHIAAGLGNVSMCKCIAT------ADP---RLIGERNHENETPFFLAARHGHKDAF 134
           G+T LHI     N +    +               L    N++  TPF LA   G+   F
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI-------IHEKQQLKVLKIGDERGSTPLHIAAGLGNV 97
           G T LHI +    +     +  +        H K       + + +G TP  +A   GN+
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL---VPNNQGLTPFKLAGVEGNI 210

Query: 98  SMCK 101
            M +
Sbjct: 211 VMFQ 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L +A     E ++EDL+     ++           D+ G + LH AA + NV    
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAV---------DDLGKSALHWAAAVNNVDAAV 174

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
             +   A+      +N+  ETP FLAAR G  +    L  H+  A+ D            
Sbjct: 175 VLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRD-----ITDHMDR 224

Query: 158 TILHYA 163
                A
Sbjct: 225 LPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 41/167 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR----IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           G T LH AVS   + + + L+R     +  +            G+TPL +AA L    M 
Sbjct: 90  GRTPLHAAVSADAQGVFQILIRNRATDLDAR---------MHDGTTPLILAARLAVEGML 140

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
           + +    AD   +   +   ++    AA   + DA   L  +   A+ D      +    
Sbjct: 141 EDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKD-----MQNNRE 190

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           ET L  A +     + A       + L       +  +     P  +
Sbjct: 191 ETPLFLA-AREGSYETA-------KVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.4 bits (171), Expect = 3e-13
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 35/166 (21%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
           R+G TALH+A    + +  + L+      + +         D  G TPLH A       +
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASADANIQ---------DNMGRTPLHAAVSADAQGV 105

Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            + +       +  R H+  TP  LAAR   +     L      A V+     +    G+
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVN-----AVDDLGK 158

Query: 158 TILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           + LH+A +    VD A         L       +  N R  +PL L
Sbjct: 159 SALHWA-AAVNNVDAA-------VVLLKNGANKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
            ++E   N   D  ++       G +ALH A +    +    L++       +       
Sbjct: 138 GMLEDLINSHAD--VNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ------- 186

Query: 79  IGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--F 134
             + R  TPL +AA  G+    K  +   A+       +H +  P  +A    H D    
Sbjct: 187 --NNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 135 LCLH 138
           L L 
Sbjct: 242 LDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 45/176 (25%)

Query: 45  GGTALHIAVSDGQ-------------EEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA 91
           G T L IA   G                ++ D +      Q   +    D  G T LH+A
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-----YQGASLHNQTDRTGETALHLA 64

Query: 92  AGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDG 147
           A        K +  A+AD      +++   TP   A     +     L  +     +D  
Sbjct: 65  ARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLD-- 118

Query: 148 YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
              +R  +G T L  A +      +        E L      VN V++ G S LH 
Sbjct: 119 ---ARMHDGTTPLILA-ARLAVEGML-------EDLINSHADVNAVDDLGKSALHW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 8e-08
 Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPR------LIG-------ERNHENETPFFLAAR 127
              G TPL IA+  G           +         I        + +   ET   LAAR
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 128 HGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN 185
           +   DA   L      A  +      +   G T LH A        +   +I      ++
Sbjct: 67  YSRSDAAKRLLEA--SADAN-----IQDNMGRTPLHAA-VSADAQGVFQILIRNRATDLD 118

Query: 186 FVNERGVSPLHL 197
                G +PL L
Sbjct: 119 ARMHDGTTPLIL 130

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 49/231 (21%)

Query: 11  KKGLFKSAMKG---KWNEVVE---NYGKDDRIHEARITRSGGTALHIAV---SDGQEEIV 61
           +  LF    +G       ++     + K     E R   +G T L  A+   S G+ + +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 62  EDLVRIIHEKQQLKVLKI-----GDERGSTPLHIAAGLGNVSMCK-------------CI 103
             L+ I  +   ++            RG T LHIA         +               
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 104 ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLH-YLCASVDDGYNYSRRKNGETIL 160
               P+  G   +  E P  LAA         +L  + +  A +       +   G T+L
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR-----RQDSRGNTVL 180

Query: 161 HYAIS-GYYFVDLAFQIIHLYEKLV-------------NFVNERGVSPLHL 197
           H  ++      +    +  +Y+ L+               +N  G+SPL +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 32/143 (22%), Positives = 43/143 (30%), Gaps = 27/143 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR---IIHEK-----QQLKVLKIGDERGSTPLHIAAGLGN 96
           G TALHIA+    +  VE LV     +H +      Q K        G  PL +AA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 97  VSMCKC-----IATADPRLIGERNHENETPFFLAARHGHKD----AFLCLHY-----LCA 142
             +           AD R    ++    T                 F+   Y      CA
Sbjct: 153 PHIVHYLTENGHKQADLR---RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 143 SVDDGYNYSRRKN--GETILHYA 163
            +    N     N  G + L  A
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMA 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGN-------- 96
           G   L +A    Q  IV  L    +  +Q  + +  D RG+T LH    + +        
Sbjct: 140 GELPLSLAACTNQPHIVHYL--TENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKF 196

Query: 97  -VSMCKCI------ATADPRLIGERNHENETPFFLAARHGHKDAF 134
              M   +         D  L    N++  +P  +AA+ G    F
Sbjct: 197 VTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 30/198 (15%), Positives = 47/198 (23%), Gaps = 53/198 (26%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR--IIHEKQQLKVLKIGDERGSTPLHIAA---GLGNVSM 99
               L   VS G  + +E L+   + H+K+           G T L  A      G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 100 CKCIATADPRL----------IGERNHENETPFFLAARHGHKDA--FLCLHYLCASVD-- 145
              +     +             +  +  +T   +A     K     L      A V   
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK--GADVHAQ 122

Query: 146 -------DGYNYSRRKNGETILHYAIS-------------GYYFVDLAFQIIHLYEKLVN 185
                            GE  L  A               G+   D            + 
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------------LR 170

Query: 186 FVNERGVSPLHLLATKPN 203
             + RG + LH L    +
Sbjct: 171 RQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 45  GGTALHIAVS--DGQEEIVEDLVRIIH--------EKQQLKVLKIGDERGSTPLHIAAGL 94
           G T LH  V+  D   E  + + ++                +  + +  G +PL +AA  
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 95  GNVSMCKCI 103
           G + + + I
Sbjct: 236 GKIGIFQHI 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 29/173 (16%)

Query: 41  ITRSGGTALHIAVSDGQEEIVEDLV------RIIHEKQQLKVLKIGDERGSTPLHIAAGL 94
           +T  G TALH+AV    E  ++ L+        +  +         ++ G T LH+AA L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ---------NDLGQTALHLAAIL 55

Query: 95  GNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLH--YLCASVDDGY 148
           G  S  + +  A A    +        T   LA R         L            D Y
Sbjct: 56  GEASTVEKLYAAGAG---VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 149 ----NYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
                                     +   +      + +   N  G +PLH+
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 32/156 (20%)

Query: 18  AMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR---IIHEK 71
           +     NE      ++     +        G T LH+AV     E+V  L      +++ 
Sbjct: 132 SQPNPENEEEPRDEDWRLQ--LEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 72  QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHG 129
                       G TPLH+A      S+ + +  A AD      R +   TP   A    
Sbjct: 188 --------EPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRP 236

Query: 130 HKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYA 163
           +      L  H   A            +  +    +
Sbjct: 237 NPILARLLRAH--GAPEP-----EDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 17/94 (18%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
            G T LH+AV      ++E L++       +            G TPL  A    N  + 
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTAR---------MYGGRTPLGSALLRPNPILA 241

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKD 132
           +   A  A      E   +  +P   +      D
Sbjct: 242 RLLRAHGAP---EPEDGGDKLSPCSSSGSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 11/78 (14%), Positives = 17/78 (21%), Gaps = 19/78 (24%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR---IIHEKQQLKVLK 78
            V+E     G D           G T L  A+      +   L        E        
Sbjct: 206 SVLELLLKAGAD--PTAR--MYGGRTPLGSALLRPNPILARLLRAHGAPEPED------- 254

Query: 79  IGDERGSTPLHIAAGLGN 96
                  +P   +    +
Sbjct: 255 --GGDKLSPCSSSGSDSD 270

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 37/165 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLV----RIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
               +     +G    V   +      +++          D+ G +PLH A   G  ++ 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQG---------DDHGFSPLHWACREGRSAVV 55

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL---CASVDDGYNYSRRKN 155
           +  I   A    I   N  ++TP  LAA HGH+D    +  L    A ++     +  ++
Sbjct: 56  EMLIMRGAR---INVMNRGDDTPLHLAASHGHRD---IVQKLLQYKADIN-----AVNEH 104

Query: 156 GETILHYA-ISGYYFVDLAFQIIHLYEK--LVNFVNERGVSPLHL 197
           G   LHYA   G   V        L     LV+  N+ G  P+  
Sbjct: 105 GNVPLHYACFWGQDQV-----AEDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 5e-13
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 20/104 (19%)

Query: 37  HEARI---TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHI 90
             ARI    R   T LH+A S G  +IV+ L++    I+           +E G+ PLH 
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV---------NEHGNVPLHY 111

Query: 91  AAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
           A   G   + + +    A    +   N   E P   A     + 
Sbjct: 112 ACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLREL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.7 bits (164), Expect = 7e-13
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G + LH A  +G+  +VE L+     I+           +    TPLH+AA  G+  + +
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVM---------NRGDDTPLHLAASHGHRDIVQ 89

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
             +   AD   I   N     P   A   G       L  +   A V         K GE
Sbjct: 90  KLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVS-----ICNKYGE 139

Query: 158 TILHYA 163
             +  A
Sbjct: 140 MPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 26/112 (23%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR---IIHEKQQLKVLK 78
           ++V+    Y  D  I+       G   LH A   GQ+++ EDLV    ++          
Sbjct: 86  DIVQKLLQYKAD--INAV--NEHGNVPLHYACFWGQDQVAEDLVANGALVSIC------- 134

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH 130
             ++ G  P+  A       + +              + N  P+      G 
Sbjct: 135 --NKYGEMPVDKAKAPLRELLRER-------AEKMGQNLNRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 23/126 (18%)

Query: 80  GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCL 137
           G       +      GN    +         + + +    +P   A R G       L +
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 138 HYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERG 191
               A ++        +  +T LH A + +   D+        +KL      +N VNE G
Sbjct: 61  R--GARIN-----VMNRGDDTPLHLA-ASHGHRDIV-------QKLLQYKADINAVNEHG 105

Query: 192 VSPLHL 197
             PLH 
Sbjct: 106 NVPLHY 111

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 23/115 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
            +       G     +      SG + +H A   G  + ++ LV     ++         
Sbjct: 49  AIALELLKQGAS--PNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP------- 97

Query: 79  IGDERGSTPLHIAAGLGNVSMCKC-IATADPRLIGERNHENETPFFLAARHGHKD 132
             D  G+ P+H+A   G+ ++     A +D   +  R+    TP  LA + G +D
Sbjct: 98  --DGTGALPIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQD 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.5 bits (161), Expect = 9e-13
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 35/160 (21%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI--- 67
           L  +A +G   EV                   R G TAL +    G   I  +L++    
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVH--PDAL--NRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLA 125
            + +         D  G++P+H AA  G +   K  +   AD   +   +     P  LA
Sbjct: 61  PNVQ---------DTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLA 108

Query: 126 ARHGHKD--AFLCLHYLCASVDDGYNYSRRKNGETILHYA 163
            + GH    +FL      + +       R   G T L  A
Sbjct: 109 VQEGHTAVVSFLAAE---SDLH-----RRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.9 bits (149), Expect = 4e-11
 Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 43/167 (25%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
            G  L  A + G  + V  L+                   +  G T L +    G+ ++ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---------NRFGKTALQVMM-FGSTAIA 51

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
             +    A       ++    +P   AAR G  D    L  H   A V+          G
Sbjct: 52  LELLKQGAS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVN-----VPDGTG 101

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
              +H A        +                 ++  + RG++PL L
Sbjct: 102 ALPIHLA-VQEGHTAVV--------SFLAAESDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 4e-06
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 18/83 (21%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI--IHEKQQLKVLKI 79
           + ++    +G D  ++      +G   +H+AV +G   +V  L     +H +        
Sbjct: 82  DTLKVLVEHGAD--VNVP--DGTGALPIHLAVQEGHTAVVSFLAAESDLHRR-------- 129

Query: 80  GDERGSTPLHIAAGLGNVSMCKC 102
            D RG TPL +A   G   +   
Sbjct: 130 -DARGLTPLELALQRGAQDLVDI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 24/123 (19%)

Query: 83  RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYL 140
           R    L  AA  G+V   + +   +       N   +T   +    G       L     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-- 57

Query: 141 CASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSP 194
            AS +      +  +G + +H A +   F+D         + L      VN  +  G  P
Sbjct: 58  GASPN-----VQDTSGTSPVHDA-ARTGFLDTL-------KVLVEHGADVNVPDGTGALP 104

Query: 195 LHL 197
           +HL
Sbjct: 105 IHL 107

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.1 bits (178), Expect = 3e-14
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 38/175 (21%)

Query: 37  HEARI---TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHI 90
             A I   +    T L  A  +   E V+ L++    +  K         D  GST LH+
Sbjct: 33  AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK---------DAEGSTCLHL 83

Query: 91  AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGY 148
           AA  G+  + + + +     +  ++    TP   A  + H D    L      + ++   
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK--GSDIN--- 138

Query: 149 NYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
              R       LH+A +    VD+A       E L      ++ VN  G SPLH+
Sbjct: 139 --IRDNEENICLHWA-AFSGCVDIA-------EILLAAKCDLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 41/170 (24%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
            ++  + LH A   G  +I   LV+    I             E   TPL  AA   ++ 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---------SEDQRTPLMEAAENNHLE 58

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCAS-VDDGYNYSRR 153
             K +    A    +  ++ E  T   LAA+ GH +   +L  +      V+      + 
Sbjct: 59  AVKYLIKAGAL---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN--GQMDVN-----CQD 108

Query: 154 KNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
             G T + +A + Y  VDL        + L      +N  +      LH 
Sbjct: 109 DGGWTPMIWA-TEYKHVDLV-------KLLLSKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.9 bits (162), Expect = 3e-12
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 24/122 (19%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
           ++V+   + G D  I+           LH A   G  +I E L+     +H         
Sbjct: 125 DLVKLLLSKGSD--INIR--DNEENICLHWAAFSGCVDIAEILLAAKCDLHAV------- 173

Query: 79  IGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLC 136
             +  G +PLHIAA           ++  +D   +  +N E ETP   A+ +    + L 
Sbjct: 174 --NIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 137 LH 138
           + 
Sbjct: 229 MS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.5 bits (161), Expect = 5e-12
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 37/174 (21%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
           G  +D    +G   L  +A KG   EVV+   + G+ D ++       G T +  A    
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGH-YEVVQYLLSNGQMD-VNCQ--DDGGWTPMIWATEYK 122

Query: 57  QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLI 111
             ++V+ L+     I+ +         D   +  LH AA  G V + + +  A  D   +
Sbjct: 123 HVDLVKLLLSKGSDINIR---------DNEENICLHWAAFSGCVDIAEILLAAKCD---L 170

Query: 112 GERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYA 163
              N   ++P  +AAR    D           + V       + K GET L  A
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVT-----LKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.0 bits (131), Expect = 4e-08
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 78  KIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA-- 133
           K+  +   +PLH AA  G+V +C   +   A+   I   + +  TP   AA + H +A  
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 134 FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVS 193
           +L      A VD      +   G T LH A +     ++   ++   +  VN  ++ G +
Sbjct: 62  YLIKA--GALVD-----PKDAEGSTCLHLA-AKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113

Query: 194 PLHL 197
           P+  
Sbjct: 114 PMIW 117

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 27/203 (13%), Positives = 52/203 (25%), Gaps = 41/203 (20%)

Query: 6   DIDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
            I   +  L +++  G                                 +G + + +   
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDFNH 81

Query: 66  RIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFF 123
                   L++    +      LH  A  G+ ++ + I     +   I +  H N T   
Sbjct: 82  ------TNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVN---IIDPRH-NRTVLH 130

Query: 124 LAARHGHKDA--FLCLHYLCASVDDGYNYSRR-KNGETILHYAISGYYFVDLAFQIIHLY 180
             A +   +    L +H     +  G + +    +  T L  A        L        
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA-VLARRRRLV------- 182

Query: 181 EKL------VNFVNERGVSPLHL 197
             L          N+   S LH 
Sbjct: 183 AYLMKAGADPTIYNKSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 9e-13
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 32/173 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG------DERGSTPLHIAAGLGNVS 98
             T LH   S+   E  EDL  I+HE ++   +  G      D   +TPL +A       
Sbjct: 125 NRTVLHWIASNSSAEKSEDL--IVHEAKEC--IAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 99  MCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLC-ASVDDGYNYSRR 153
           +   +  A AD       N    +    AA +       ++         ++        
Sbjct: 181 LVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELD 232

Query: 154 KNGETILHYAISGYYFVDLAF---------QIIHLYEKLVNFVNERGVSPLHL 197
           +NG T L           +A          ++ +      +    +G + LH 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 33/138 (23%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI------IHEKQQLKVLKIGDERGSTPLHIAA---GL 94
           S  +ALH A ++    ++  ++        I E          D  G T L I A   G 
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL---------DRNGMTALMIVAHNEGR 248

Query: 95  GNVSMCKC-------IATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVD 145
             V+  K        +            ++  T    AA+  +     +L      ++ D
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-GSNKD 307

Query: 146 DGYNYSRRKNGETILHYA 163
                 + ++G+T +  A
Sbjct: 308 -----KQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 37/184 (20%)

Query: 23  WNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE 82
           W   +EN  K+ + H++    S   +L  A  DG  +   + +                 
Sbjct: 17  WMPPMENEEKNRKNHQS--ITSSQHSLLEASYDGYIKRQRNEL---------------QH 59

Query: 83  RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYL 140
               P     G GN  +     T   ++  E   E+       A  G       +     
Sbjct: 60  YSLYPNPQGYGNGNDFLGDFNHTNL-QIPTEPEPESPIKLHTEA-AGSYAITEPITRE-- 115

Query: 141 CASVDDGYNYSRRKNGETILHYAISGYYFVDLA-FQIIHLYEKL------VNFVNERGVS 193
                   N    ++  T+LH+  +     + +   I+H  ++       VN ++    +
Sbjct: 116 ------SVNIIDPRHNRTVLHWI-ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 194 PLHL 197
           PL L
Sbjct: 169 PLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 45  GGTALHIAVSDGQEE---IVEDLVRIIH----EKQQLKVLKIGDERGSTPLHIAAGLGNV 97
           G TAL I   +   +     + L  +      +            +G T LH AA + N+
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLL--VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 98  SMCKC-IAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSR 152
            + K  +    ++     +++ + +TP  LAA+ G  +   +L      ASV+     + 
Sbjct: 293 PIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASVE-----AV 342

Query: 153 RKNGETILHYA 163
                T    A
Sbjct: 343 DATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 18/95 (18%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
            G TALH A       IV+ LV        ++         DE G TP+ +AA  G + +
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ---------DEDGKTPIMLAAQEGRIEV 328

Query: 100 CKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
              +    A    +   +  + T   LA  + H +
Sbjct: 329 VMYLIQQGAS---VEAVDATDHTARQLAQANNHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T + +A  +G+ E+V  L++    +            D    T   +A    + ++  
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAV---------DATDHTARQLAQANNHHNIVD 363

Query: 102 C 102
            
Sbjct: 364 I 364

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 18/156 (11%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            + G   +  A+   +    ++L   I E   + +     +   T        G   +  
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDEL--YIEEGDIIYI----TDMSDTNWWKGTSKGRTGLIP 62

Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
                    + E+    + P   AA+ G+             V+        K G T L+
Sbjct: 63  SN------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-----GLDKAGSTALY 111

Query: 162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
           +A       D+   +       +N  N+ G + LH 
Sbjct: 112 WA-CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 40/205 (19%)

Query: 4   GIDIDQLKK----GLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEE 59
             DI  +        +K   KG+   ++ +    ++        S    LH A   G   
Sbjct: 35  EGDIIYITDMSDTNWWKGTSKGR-TGLIPSNYVAEQ------AESIDNPLHEAAKRGNLS 87

Query: 60  IVEDLVR---IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI---ATADPRLIGE 113
            + + +     ++           D+ GST L+ A   G+  + + +      +   + +
Sbjct: 88  WLRECLDNRVGVNGL---------DKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQ 135

Query: 114 RNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVD 171
           +N   +T    AA  G+ D    L      A  D      R    +     A +      
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAK--GARTD-----LRNIEKKLAFDMA-TNAACAS 187

Query: 172 LAFQIIHLYEKLVNFVNERGVSPLH 196
           L  +     + +    N        
Sbjct: 188 LL-KKKQGTDAVRTLSNAEDYLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 43/202 (21%)

Query: 9   QLKKG---LFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
            +K G   +F++    +     E Y ++  I    IT    T      S G+  ++    
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKGRTGLIPSN- 64

Query: 66  RIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK-CIAT-ADPRLIGERNHENETPFF 123
             + E+          E    PLH AA  GN+S  + C+        +   +    T  +
Sbjct: 65  -YVAEQ---------AESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALY 111

Query: 124 LAARHGHKD--AFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE 181
            A   GHKD    L        ++      + K G+T LH A +   + D+        +
Sbjct: 112 WACHGGHKDIVEMLFTQP-NIELN-----QQNKLGDTALHAA-AWKGYADIV-------Q 157

Query: 182 KL------VNFVNERGVSPLHL 197
            L       +  N        +
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           G TAL+ A   G ++IVE L       ++++         ++ G T LH AA  G   + 
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQ---------NKLGDTALHAAAWKGYADIV 156

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVD----DGYNYSRRK 154
           +  +A  A       RN E +  F +A                A       + Y      
Sbjct: 157 QLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

Query: 155 NGETILHY 162
           + E   H+
Sbjct: 214 DLEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 29/129 (22%)

Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAF 134
                + G   +  A           +     D   I      ++T ++     G     
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGD---IIYITDMSDTNWWKGTSKGRTGL- 60

Query: 135 LCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVN 188
                    +   Y   + ++ +  LH A +    +           +       VN ++
Sbjct: 61  ---------IPSNYVAEQAESIDNPLHEA-AKRGNLSWL-------RECLDNRVGVNGLD 103

Query: 189 ERGVSPLHL 197
           + G + L+ 
Sbjct: 104 KAGSTALYW 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 9e-14
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 18  AMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEK 71
           A  GK +E+ E                 +   TALH A S G  EIVE L+++   +++K
Sbjct: 14  AYSGKLDELKERILADKSL--ATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 72  QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHK 131
                    D+ G +PLHIAA  G   + K +       +   N    TP   AA     
Sbjct: 70  ---------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH 119

Query: 132 DAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERG 191
           +  + L    A+ D     ++     T +H A +      +   + +      N  +  G
Sbjct: 120 EIAVMLLEGGANPD-----AKDHYDATAMHRAAAKGNLKMVHILLFYKAS--TNIQDTEG 172

Query: 192 VSPLHLLATKPN 203
            +PLHL   +  
Sbjct: 173 NTPLHLACDEER 184

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 8e-13
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           S     ++A S   +E+ E ++                  D+   T LH A   G+  + 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRT---------DQDSRTALHWACSAGHTEIV 56

Query: 101 KCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGET 158
           + +         + +++    +P  +AA  G  +    L    A V+     +  +NG T
Sbjct: 57  EFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-----AVNQNGCT 108

Query: 159 ILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPN 203
            LHYA S          +        +  +    + +H  A K N
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGAN--PDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            ++G T LH A S  + EI   L+      +        D   +T +H AA  GN+ M  
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLL------EGGANPDAKDHYDATAMHRAAAKGNLKMVH 156

Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
            +          ++ E  TP  LA      +    L    AS+         K  +T L 
Sbjct: 157 ILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-----IENKEEKTPLQ 210

Query: 162 YA 163
            A
Sbjct: 211 VA 212

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 9e-14
 Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 50/228 (21%)

Query: 14  LFKSAMKGKWNEV------VENYGKDDRIHEARITRSGGTALHIAV---SDGQEEIVEDL 64
           LF    +G   E+      +    K           +G T L  AV    DG    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 65  VRIIHEKQQLKVLK-----IGDERGSTPLHIAAGLGNVSM------------CKCIATAD 107
           ++I  +    K L          +G + LHIA    ++               +      
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 108 PRLIGERNHENETPFFLAARHGHKDAFLCL---HYLCASVDDGYNYSRRKNGETILHYAI 164
            +  G   +  E P  LAA     D    L    +  AS++     +    G T+LH  +
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE-----ATDSLGNTVLHALV 180

Query: 165 ---------------SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
                               + +  ++     +L    N +G++PL L
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 29  NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI------IHEKQQ-------LK 75
             G+  + H+      G   L +A    Q ++V  L+        +              
Sbjct: 120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

Query: 76  VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFL 135
           V+   +   ++ L I    G + M   +      L    NH+  TP  LAA+ G  + F 
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLTPLKLAAKEGKIEIF- 237

Query: 136 CLHYLCASVDDGYNYSRRKNGETILHYA 163
              ++           R  +G    H+ 
Sbjct: 238 --RHIL---------QREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 24/144 (16%), Positives = 37/144 (25%), Gaps = 30/144 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR---IIHEK----QQLKVLKIGDERGSTPLHIAAGLGNV 97
           G +ALHIA+     + V+ LV     +H +       K        G  PL +AA     
Sbjct: 90  GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149

Query: 98  SMCKC-----IATADPR-------------LIGERNHENETPFFLAARHGHKDAFLCLHY 139
            +           A                ++   N    +   +    G       L  
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 140 LCASVDDGYNYSRRKNGETILHYA 163
                +          G T L  A
Sbjct: 210 TVQLEE-----ISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 29/187 (15%), Positives = 47/187 (25%), Gaps = 40/187 (21%)

Query: 47  TALHIAVSDGQEEIVEDLVR--IIHEKQQLKVLKIGDERGSTPLHIAAGL---GNVSMCK 101
             L   VS G  E +  L+     + K            G T L  A      G  +   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 102 CIATADPRL----------IGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVD--- 145
            +   D               +  ++  +   +A          C+  L    A V    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ---CVKLLVENGADVHLRA 120

Query: 146 -----DGYNYSRRKNGETILHYA-ISGY-----YFVDLAFQIIHLYEKLVNFVNERGVSP 194
                  +  +    GE  L  A  +       Y ++   Q   L        +  G + 
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-----DSLGNTV 175

Query: 195 LHLLATK 201
           LH L   
Sbjct: 176 LHALVMI 182

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 70.7 bits (174), Expect = 9e-14
 Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 41/183 (22%)

Query: 31  GKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG---DERGSTP 87
           G+ ++I  +R    G     I   DG                      I         TP
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS------------SYIAADVVSEYETP 48

Query: 88  LHIAAGLGNVSMCKC-IATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASV 144
              AA   +       +   D   +   +    T     A  G       L      A +
Sbjct: 49  WWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADL 103

Query: 145 DDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHLL 198
               ++   + G T LH A +GY   ++        E L      +   +ERG++ L L 
Sbjct: 104 ----DHRDMRGGLTALHMA-AGYVRPEVV-------EALVELGADIEVEDERGLTALELA 151

Query: 199 ATK 201
              
Sbjct: 152 REI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 29/129 (22%)

Query: 38  EARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGL 94
           + R  R G TALH+A    + E+VE LV +   I  +         DERG T L +A  +
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELAREI 154

Query: 95  GNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK 154
              +          R+      E            + +    +              +R 
Sbjct: 155 LKTTPKGNPMQFGRRI----GLEKVINVLEGQVFEYAEVDEIV-------------EKRG 197

Query: 155 NGETILHYA 163
            G+ + +  
Sbjct: 198 KGKDVEYLV 206

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
              LI  K+G +               D+ SE +     A           LL+   +  
Sbjct: 17  MEYLIEWKDGHSPSWV-PSSY---IAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA 72

Query: 518 TVFRKVDDQGNSALHLAATLGDHK 541
                 D+ G +AL   A LG   
Sbjct: 73  V-----DENGRTALLFVAGLG-SD 90

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 23/105 (21%)

Query: 45  GGTALHIAVSDGQEEIVEDLV---RIIHEKQQLKVLK-------------IGDERGSTPL 88
           G TAL +A    +     + +   R I  ++ + VL+                 +G    
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203

Query: 89  HIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHK 131
           ++                 A+      ++   E     A      
Sbjct: 204 YLVRWKDGGDCEWVKGVHVAE---DVAKD--YEDGLEYAVAESVI 243

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 68.6 bits (169), Expect = 1e-13
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 29/128 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR----IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
              ++H   + G+ + +++ +R    ++++          DERG TPL  A+  G +   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP---------DERGFTPLIWASAFGEIETV 52

Query: 101 KCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKN 155
           + +    AD         E E+   LA+  G+ D    +  L      ++         N
Sbjct: 53  RFLLEWGAD---PHILAKERESALSLASTGGYTD---IVGLLLERDVDIN-----IYDWN 101

Query: 156 GETILHYA 163
           G T L YA
Sbjct: 102 GGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 24/116 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
           E V     +G D   H     +   +AL +A + G  +IV  L+     I+         
Sbjct: 50  ETVRFLLEWGAD--PHIL--AKERESALSLASTGGYTDIVGLLLERDVDINIY------- 98

Query: 79  IGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKD 132
             D  G TPL  A    +V   +  +A  AD   +        TP  LA   G++ 
Sbjct: 99  --DWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRK 149

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.8 bits (154), Expect = 1e-11
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 28/127 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L  A + G+ E V  L+      H            +   + L +A+  G   +  
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHIL---------AKERESALSLASTGGYTDIVG 86

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNG 156
             +    D   I   +    TP   A R  H     C+  L    A +      +   +G
Sbjct: 87  LLLERDVD---INIYDWNGGTPLLYAVRGNHVK---CVEALLARGADLT-----TEADSG 135

Query: 157 ETILHYA 163
            T +  A
Sbjct: 136 YTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 46.6 bits (112), Expect = 4e-06
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           GGT L  AV     + VE L+     +  +          + G TP+ +A  LG   + +
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLARGADLTTE---------ADSGYTPMDLAVALGYRKVQQ 152

Query: 102 C 102
            
Sbjct: 153 V 153

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 38/167 (22%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
           T    T L  A   G  + V  L++    +            +   ++P+H AA  G+V 
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQP----------ESDLASPIHEAARRGHVE 171

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNG 156
               +     +   I  +     TP +LA  +  +    C+  L   ++ G + ++ K  
Sbjct: 172 CVNSLIAYGGN---IDHKISHLGTPLYLACENQQRA---CVKKL---LESGADVNQGKGQ 222

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
           ++ LH         +LA         L          N  G  P+ L
Sbjct: 223 DSPLHAV-VRTASEELA-------CLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 37/167 (22%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
             S  + +H A   G +  + +L+     ++                +PLH A   G++S
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII---------TADHVSPLHEACLGGHLS 106

Query: 99  MCKCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNG 156
             K +    A    +     +  TP F A   G  D   C++ L   +  G +     + 
Sbjct: 107 CVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWD---CVNLL---LQHGASVQPESDL 157

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
            + +H A +    V+           L      ++       +PL+L
Sbjct: 158 ASPIHEA-ARRGHVECV-------NSLIAYGGNIDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 44/164 (26%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI--- 67
           LF + + G W + V     +G    +          + +H A   G  E V  L+     
Sbjct: 129 LFNACVSGSW-DCVNLLLQHGAS--VQP---ESDLASPIHEAARRGHVECVNSLIAYGGN 182

Query: 68  IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIG-----ERNHENETPF 122
           I  K              TPL++A      +  K        L+       +    ++P 
Sbjct: 183 IDHK---------ISHLGTPLYLACENQQRACVKK-------LLESGADVNQGKGQDSPL 226

Query: 123 FLAARHGHKDAFLCLHYL---CASVDDGYNYSRRKNGETILHYA 163
               R   ++       L    A        ++   G+  +   
Sbjct: 227 HAVVRTASEE---LACLLMDFGADTQ-----AKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 33/145 (22%)

Query: 4   GIDIDQLKKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQ 57
           G  +         + ++A +G   E V     YG +  I         GT L++A  + Q
Sbjct: 148 GASVQPESDLASPIHEAARRGH-VECVNSLIAYGGN--IDHK--ISHLGTPLYLACENQQ 202

Query: 58  EEIVEDLVRIIHEKQQLKVLKIG-----DERGSTPLHIAAGLGNVSMCKC-IAT-ADPRL 110
              V+ L            L+ G      +   +PLH      +  +    +   AD   
Sbjct: 203 RACVKKL------------LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGAD--- 247

Query: 111 IGERNHENETPFFLAARHGHKDAFL 135
              +N E + P  L           
Sbjct: 248 TQAKNAEGKRPVELVPPESPLAQLF 272

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 33/148 (22%)

Query: 25  EVVE---NYGKD-DRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG 80
                    G     +   +    G          G   +   L+               
Sbjct: 9   HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLM-------------GD 55

Query: 81  DERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLH 138
                +P+H AA  G+    +  I+       +     ++ +P   A   GH     C+ 
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLS---CVK 109

Query: 139 YLC---ASVDDGYNYSRRKNGETILHYA 163
            L    A V+         +  T L  A
Sbjct: 110 ILLKHGAQVN-----GVTADWHTPLFNA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 38/173 (21%), Positives = 56/173 (32%), Gaps = 41/173 (23%)

Query: 39  ARITRSGGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGL 94
           A         L  A   G  E V+ L  +      +          + R STPLH AAG 
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI---------EGRQSTPLHFAAGY 52

Query: 95  GNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNY 150
             VS+ + +    AD   +  ++     P   A  +GH +    L  H   A V+     
Sbjct: 53  NRVSVVEYLLQHGAD---VHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVN----- 102

Query: 151 SRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
                  T LH A +     ++        + L          N  G +PL L
Sbjct: 103 VADLWKFTPLHEA-AAKGKYEIC-------KLLLQHGADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.0 bits (165), Expect = 3e-13
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 26/130 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
             T LH A    +  +VE L++    +H K         D+ G  PLH A   G+  + +
Sbjct: 42  QSTPLHFAAGYNRVSVVEYLLQHGADVHAK---------DKGGLVPLHNACSYGHYEVAE 92

Query: 102 CI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    A    +   +    TP   AA  G  +    L  H   A         + ++G 
Sbjct: 93  LLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPT-----KKNRDGN 142

Query: 158 TILHYAISGY 167
           T L     G 
Sbjct: 143 TPLDLVKDGD 152

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 1e-13
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 26/128 (20%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
           ++ G T LH A  +G  E V+ L+     ++ +          + G+TPLH+AA  G+  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR---------SKDGNTPLHLAAKNGHAE 56

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
           + K +    AD   +  R+ +  TP  LA ++GH +    L      A V+     +R  
Sbjct: 57  IVKLLLAKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLLDAK--GADVN-----ARSW 106

Query: 155 NGETILHY 162
                 H+
Sbjct: 107 GSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.8 bits (123), Expect = 5e-08
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 14/90 (15%)

Query: 78  KIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA-- 133
             G + G+TPLH AA  G+    K  ++  AD   +  R+ +  TP  LAA++GH +   
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 134 FLCLHYLCASVDDGYNYSRRKNGETILHYA 163
            L      A V+     +R K+G T  H A
Sbjct: 60  LLLAK--GADVN-----ARSKDGNTPEHLA 82

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 27/130 (20%)

Query: 41  ITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNV 97
           +    G  L  A + G  E +  L++    ++ +         +  G T L +   LGN 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQ---------NGFGRTALQVMK-LGNP 50

Query: 98  SMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRR 153
            + + +    A+      ++         AAR G  D    L      A V+        
Sbjct: 51  EIARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVN-----IED 100

Query: 154 KNGETILHYA 163
             G   LH A
Sbjct: 101 NEGNLPLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.6 bits (156), Expect = 5e-12
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G   +H A   G  + ++ L+     ++ +         D  G+ PLH+AA  G++ + +
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIE---------DNEGNLPLHLAAKEGHLRVVE 120

Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKD 132
            +       +G RNH+ +T   LA  +G  +
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNE 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.3 bits (145), Expect = 2e-10
 Identities = 34/127 (26%), Positives = 45/127 (35%), Gaps = 28/127 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G TAL +    G  EI   L+        K         D  G   +H AA  G +   +
Sbjct: 38  GRTALQVM-KLGNPEIARRLLLRGANPDLK---------DRTGFAVIHDAARAGFLDTLQ 87

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCAS-VDDGYNYSRRKNG 156
            +    AD   +   ++E   P  LAA+ GH     FL  H   AS V       R   G
Sbjct: 88  TLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH--TASNVG-----HRNHKG 137

Query: 157 ETILHYA 163
           +T    A
Sbjct: 138 DTACDLA 144

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 31/176 (17%), Positives = 49/176 (27%), Gaps = 41/176 (23%)

Query: 34  DRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG---DERGSTPLHI 90
           ++I  +R    G     I   DG                      I         TP   
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS------------SYIAADVVSEYETPWWT 50

Query: 91  AAGLGNVSMCKC-IATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDG 147
           AA   +       +   D   +   +    T     A  G       L      A +   
Sbjct: 51  AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADL--- 102

Query: 148 YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
            ++   + G T LH A +GY   ++        E L      +   +ERG++ L L
Sbjct: 103 -DHRDMRGGLTALHMA-AGYVRPEVV-------EALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 5e-13
 Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 26/134 (19%)

Query: 37  HEARITRSGGTALHIAVSDGQEEIVEDLV--RIIHEKQQLKVLKIGDERGSTPLHIAAGL 94
             A +     T    A     E+ +  L+  R +            DE G T L   AGL
Sbjct: 36  IAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAV---------DENGRTALLFVAGL 86

Query: 95  GNVSMCKCIAT--ADPRLIGERNHEN-ETPFFLAARHGHKDA--FLCLHYLCASVDDGYN 149
           G+    + +A   AD   +  R+     T   +AA +   +    L      A ++    
Sbjct: 87  GSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVEL--GADIE---- 137

Query: 150 YSRRKNGETILHYA 163
               + G T L  A
Sbjct: 138 -VEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 30/99 (30%)

Query: 38  EARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGL 94
           + R  R G TALH+A    + E+VE LV +   I  +         DERG T L +A  +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELAREI 153

Query: 95  GNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA 133
              +                      P     R G +  
Sbjct: 154 LKTTPK------------------GNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
              LI  K+G +               D+ SE +     A           LL+   +  
Sbjct: 16  MEYLIEWKDGHSPSWV-PSSY---IAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA 71

Query: 518 TVFRKVDDQGNSALHLAATLGDHK 541
                VD+ G +AL   A LG   
Sbjct: 72  -----VDENGRTALLFVAGLG-SD 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 45/168 (26%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG-----DERGSTPLHIAAGLGNVSM 99
            G  L  A   GQ++ V  L            +  G     D  G++PLH+AA  G+ S 
Sbjct: 2   LGKKLLEAARAGQDDEVRIL------------MANGAPFTTDWLGTSPLHLAAQYGHFST 49

Query: 100 CKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKN 155
            +  +           R   + TP  +AA  GH +    L  H   A V+     ++   
Sbjct: 50  TEVLLRAGVS---RDARTKVDRTPLHMAASEGHANIVEVLLKH--GADVN-----AKDML 99

Query: 156 GETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
             T LH+A + +   ++        E L      V+  ++   +   +
Sbjct: 100 KMTALHWA-TEHNHQEVV-------ELLIKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.3 bits (163), Expect = 5e-13
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 26/127 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVR---IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G + LH+A   G     E L+R       +          +   TPLH+AA  G+ ++ +
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDAR---------TKVDRTPLHMAASEGHANIVE 84

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    AD   +  ++    T    A  H H++    L  +   A V      ++ K  +
Sbjct: 85  VLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVH-----TQSKFCK 134

Query: 158 TILHYAI 164
           T    +I
Sbjct: 135 TAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 63.6 bits (156), Expect = 4e-12
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 28/140 (20%)

Query: 4   GIDIDQLKKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQ 57
           G        G   L  +A  G      E     G          T+   T LH+A S+G 
Sbjct: 25  GAPFTTDWLGTSPLHLAAQYGH-FSTTEVLLRAGVS--RDAR--TKVDRTPLHMAASEGH 79

Query: 58  EEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIG 112
             IVE L++    ++ K         D    T LH A    +  + + +    AD   + 
Sbjct: 80  ANIVEVLLKHGADVNAK---------DMLKMTALHWATEHNHQEVVELLIKYGAD---VH 127

Query: 113 ERNHENETPFFLAARHGHKD 132
            ++   +T F ++  +G++D
Sbjct: 128 TQSKFCKTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
             TALH A     +E+VE L++    +H +          +   T   I+   GN  + +
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQ---------SKFCKTAFDISIDNGNEDLAE 150

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.8 bits (167), Expect = 2e-13
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            G  L  A   G+++ V  L+     ++ +         D  G TPLH+AA  G++ + +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAE---------DASGWTPLHLAAFNGHLEIVE 64

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    AD   +   +H   TP  LAA  GH +    L  +   A V+     +    G 
Sbjct: 65  VLLKNGAD---VNAVDHAGMTPLRLAALFGHLEIVEVLLKN--GADVN-----ANDMEGH 114

Query: 158 TILHYA 163
           T LH A
Sbjct: 115 TPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.7 bits (159), Expect = 3e-12
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH+A  +G  EIVE L++    ++           D  G TPL +AA  G++ + +
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLLKNGADVNAV---------DHAGMTPLRLAALFGHLEIVE 97

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    AD   +   + E  TP  LAA  GH +    L  +   A V+     ++ K G+
Sbjct: 98  VLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVN-----AQDKFGK 147

Query: 158 TILHYA 163
           T    +
Sbjct: 148 TAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 6e-11
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 24/116 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
           E+VE     G D  ++      +G T L +A   G  EIVE L++    ++         
Sbjct: 61  EIVEVLLKNGAD--VNAV--DHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN------- 109

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
             D  G TPLH+AA  G++ + + +    AD   +  ++   +T F ++  +G++D
Sbjct: 110 --DMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNED 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.4 bits (109), Expect = 9e-06
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH+A   G  EIVE L++    ++ +         D+ G T   I+   GN  + +
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQ---------DKFGKTAFDISIDNGNEDLAE 163

Query: 102 C 102
            
Sbjct: 164 I 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 28/128 (21%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           +   ++H   + G+   +   +     I+           DE G TPL  AA  G +++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT---------DEEGFTPLMWAAAHGQIAVV 52

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKN 155
           +  +   AD           E+   LA   G+ D    +  L      V+         N
Sbjct: 53  EFLLQNGAD---PQLLGKGRESALSLACSKGYTD---IVKMLLDCGVDVN-----EYDWN 101

Query: 156 GETILHYA 163
           G T L YA
Sbjct: 102 GGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.8 bits (154), Expect = 1e-11
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
            VVE     G D         +   +AL +A S G  +IV+ L+     ++E        
Sbjct: 50  AVVEFLLQNGAD--PQLL--GKGRESALSLACSKGYTDIVKMLLDCGVDVNEY------- 98

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
             D  G TPL  A    +V   K +  + AD                LA   G++ 
Sbjct: 99  --DWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRS 149

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.0 bits (152), Expect = 2e-11
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 28/127 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L  A + GQ  +VE L++                  +   + L +A   G   + K
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLL---------GKGRESALSLACSKGYTDIVK 86

Query: 102 CI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNG 156
            +     D   + E +    TP   A    H     C+  L    A            +G
Sbjct: 87  MLLDCGVD---VNEYDWNGGTPLLYAVHGNHVK---CVKMLLESGADPT-----IETDSG 135

Query: 157 ETILHYA 163
              +  A
Sbjct: 136 YNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           GGT L  AV     + V+ L+        +          + G   + +A  LG  S+ +
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIE---------TDSGYNSMDLAVALGYRSVQQ 152

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.2 bits (163), Expect = 3e-13
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 28/128 (21%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           +G T LH+A  +G  E+V+ L+     ++ K         D+ G TPLH+AA  G++ + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVV 51

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKN 155
           K  +   AD   +  ++    TP  LAAR+GH +    +  L    A V+     ++ KN
Sbjct: 52  KLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE---VVKLLLEAGADVN-----AKDKN 100

Query: 156 GETILHYA 163
           G T LH A
Sbjct: 101 GRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 5e-11
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 17/93 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH+A  +G  E+V+ L+     ++ K         D+ G TPLH+AA  G++ + K
Sbjct: 35  GRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVVK 85

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
            +    AD   +  ++    TP  LAAR+GH +
Sbjct: 86  LLLEAGAD---VNAKDKNGRTPLHLAARNGHLE 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 12/60 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH+A  +G  E+V+ L+     ++ K         D+ G TPLH+AA  G++ + K
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVVK 118

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.8 bits (172), Expect = 4e-13
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 37/181 (20%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLK 78
           E V      G D  I+ A     G TALH A  D   ++V+ LV     I++        
Sbjct: 54  EEVLRLLERGAD--INYA--NVDGLTALHQACIDDNVDMVKFLVENGANINQP------- 102

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLC 136
             D  G  PLH AA  G + + + + +  A    +G  N E +TP  +A     ++    
Sbjct: 103 --DNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEE---L 154

Query: 137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLH 196
           L                 + E                +              + G + LH
Sbjct: 155 LQNEVNRQG--------VDIEAARKEEERIMLRDARQWLNSGHIN--DVRHAKSGGTALH 204

Query: 197 L 197
           +
Sbjct: 205 V 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 35/144 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLV----------RIIHEKQQLK-VLKI----------GDER 83
           G T L IA  +  EE++++ V          R   E+  L+   +             + 
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 84  GSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHY 139
           G T LH+AA  G   + K +  A  D   +  ++++  TP   AA  G ++A   L  + 
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN- 254

Query: 140 LCASVDDGYNYSRRKNGETILHYA 163
               ++     +  K G+T    A
Sbjct: 255 -LCDME-----AVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 2e-11
 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
             G     A S G  E V  L+     I+           +  G T LH A    NV M 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYA---------NVDGLTALHQACIDDNVDMV 89

Query: 101 KCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
           K +    A+   I + ++E   P   AA  G+ D   +L      A V      +    G
Sbjct: 90  KFLVENGAN---INQPDNEGWIPLHAAASCGYLDIAEYLISQ--GAHVG-----AVNSEG 139

Query: 157 ETILHYA 163
           +T L  A
Sbjct: 140 DTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 28/136 (20%)

Query: 4   GIDIDQLKKGLFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEI 60
           G+DI+  +K       +    +  +   +   +D  H     +SGGTALH+A + G  E+
Sbjct: 163 GVDIEAARK----EEERIMLRDARQWLNSGHINDVRH----AKSGGTALHVAAAKGYTEV 214

Query: 61  VEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERN 115
           ++ L++    ++ K         D  G TPLH AA  G    C+ +     D   +   N
Sbjct: 215 LKLLIQARYDVNIK---------DYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVN 262

Query: 116 HENETPFFLAARHGHK 131
              +T F +A      
Sbjct: 263 KVGQTAFDVADEDILG 278

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 37/164 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
                 +    G E  +E    ++  K+     K+  + G      A   G+      + 
Sbjct: 8   QKRNEQLKRWIGSETDLEPP--VVKRKK----TKVKFDDG-AVFLAACSSGDTEEVLRLL 60

Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETIL 160
              AD   I   N +  T    A    + D   FL  +   A+++          G   L
Sbjct: 61  ERGAD---INYANVDGLTALHQACIDDNVDMVKFLVEN--GANIN-----QPDNEGWIPL 110

Query: 161 HYAISGYYFVDLAFQIIHLYEKL-------VNFVNERGVSPLHL 197
           H A +   ++D+A        +        V  VN  G +PL +
Sbjct: 111 HAA-ASCGYLDIA--------EYLISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER-----NHENETPFFLAARHGHK 131
           +K+ D +      +   +G+ +  +         + +R       ++   F  A   G  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEP-------PVVKRKKTKVKFDDGAVFLAACSSGDT 53

Query: 132 DAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNF---VN 188
           +  L L    A ++         +G T LH A      VD+        + LV     +N
Sbjct: 54  EEVLRLLERGADIN-----YANVDGLTALHQA-CIDDNVDMV-------KFLVENGANIN 100

Query: 189 ER---GVSPLHLLATK 201
           +    G  PLH  A+ 
Sbjct: 101 QPDNEGWIPLHAAASC 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 26/128 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LHIA   G    VE L++     + K         D  G TPLH A   G++ + +
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVK---------DHAGWTPLHEACNHGHLKVVE 60

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    A    +    ++N++P   AA++GH D    L  +   AS +     +    G 
Sbjct: 61  LLLQHKAL---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--GASRN-----AVNIFGL 110

Query: 158 TILHYAIS 165
             + Y   
Sbjct: 111 RPVDYTDD 118

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 28/145 (19%)

Query: 4   GIDIDQLKKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQ 57
           GID     +G   L  +++KG     VE     G D   +      +G T LH A + G 
Sbjct: 1   GIDPFTNHRGETLLHIASIKGD-IPSVEYLLQNGSD--PNVK--DHAGWTPLHEACNHGH 55

Query: 58  EEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIG 112
            ++VE L++    ++             +  +PLH AA  G+V + K  ++  A      
Sbjct: 56  LKVVELLLQHKALVNTT---------GYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RN 103

Query: 113 ERNHENETPFFLAARHGHKDAFLCL 137
             N     P         K   L  
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.3 bits (132), Expect = 5e-09
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 38/132 (28%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPRLIG------ERNHENETPFFLAARHGHKDA- 133
           + RG T LHIA+  G++   +        L+        ++H   TP   A  HGH    
Sbjct: 7   NHRGETLLHIASIKGDIPSVEY-------LLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 134 -FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL-------VN 185
             L  H   A V+           ++ LH A +    VD+         KL        N
Sbjct: 60  ELLLQH--KALVNT-----TGYQNDSPLHDA-AKNGHVDIV--------KLLLSYGASRN 103

Query: 186 FVNERGVSPLHL 197
            VN  G+ P+  
Sbjct: 104 AVNIFGLRPVDY 115

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 6e-13
 Identities = 24/170 (14%), Positives = 42/170 (24%), Gaps = 24/170 (14%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH   S    E+V+ LV+                 D  G + L  A    N     
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYG---------DNMGESCLVKAVKSVNNYDSG 181

Query: 102 CIATADPRL---IGERNHENETPFFLAARHGH-KDAFLCLHYLCASV------DDGYNYS 151
                   L   +   +  N T                   Y    +             
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 152 RRKNGETILHYAISGYYFVDLAFQIIHLY--EKLVNFVNERGVSPLHLLA 199
              N +       +G     +   +   +    ++N  +  G + L++ A
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 19/208 (9%)

Query: 17  SAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV 76
             +  +  E+  +   D     +    S     H++     +E+ +          QL +
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP-----NTQLNL 123

Query: 77  LKIGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGH---- 130
               DE G+TPLH    + N+ + K  +   ++       ++  E+    A +  +    
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYDS 180

Query: 131 KDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER 190
                 L YL   +             TILH+ I        +    +  + L+ ++ ++
Sbjct: 181 GTFEALLDYLYPCLIL-----EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 191 GVSPLHLLATKPNAFRSGSHLGLCTGII 218
              P+     +  +  +  +      I+
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSIL 263

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 13/131 (9%), Positives = 28/131 (21%), Gaps = 14/131 (10%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG------DERGSTPLHIAAGLGN 96
               T LH  +            +   +     ++K                        
Sbjct: 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258

Query: 97  VSMCKCIAT---ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR 153
                           ++  ++   +T   +AAR G+      L    A           
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF-----IAN 313

Query: 154 KNGETILHYAI 164
           K+G   + +  
Sbjct: 314 KSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGL 94
           G T L+IA   G   IV+ L+                  ++ G  P+   AGL
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIA---------NKSGLRPVDFGAGL 326

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            G  L  A   GQ++ V  L+     ++ K         DE G TPL++A   G++ + +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAK---------DEYGLTPLYLATAHGHLEIVE 64

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
            +    AD   +   +    TP  LAA  GH +    L  H   A V+     ++ K G+
Sbjct: 65  VLLKNGAD---VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH--GADVN-----AQDKFGK 114

Query: 158 TILHYA 163
           T    +
Sbjct: 115 TAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 17/93 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L++A + G  EIVE L++    ++           D  G TPLH+AA +G++ + +
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKNGADVNAV---------DAIGFTPLHLAAFIGHLEIAE 97

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
            +    AD   +  ++   +T F ++  +G++D
Sbjct: 98  VLLKHGAD---VNAQDKFGKTAFDISIGNGNED 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 32/173 (18%), Positives = 49/173 (28%), Gaps = 43/173 (24%)

Query: 40  RITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGN 96
           R   +    L  A   G+ E+V+  V+      +          +E G T LH A    N
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---------NEEGITALHNAICGAN 66

Query: 97  VSMCKCIATADPRLIG------ERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGY 148
            S+          LI         +    TP   AA          L  H   A++    
Sbjct: 67  YSIVDF-------LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH--GAAI---- 113

Query: 149 NYSRRKNGETILHYAIS---GYYFVDLAFQIIHLYEK--LVNFVNERGVSPLH 196
             +   +G T          GY          +L +    +  +N   V  L 
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADC-----ATYLADVEQSMGLMNSGAVYALW 161

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 28/161 (17%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G TALH A+      IV+ L+     ++           D  G TPLH AA   +  +C 
Sbjct: 54  GITALHNAICGANYSIVDFLITAGANVNSP---------DSHGWTPLHCAASCNDTVICM 104

Query: 102 CIAT--ADPRLIGERNHEN-ETPFFLAA--RHGHKDAFLCLHYLCASVDDGYNYSRRKNG 156
            +    A    I      +  T F      R G+ D    L  +  S+            
Sbjct: 105 ALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-----NSGA 156

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
              L    + +                V   +    +    
Sbjct: 157 VYALWDYSAEFGDE---LSFREGESVTVLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 18/114 (15%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIA--VSDGQEEIVEDLVRIIHEKQQLKVLKI 79
            +      +G       A     G TA        +G  +    L  +  +      + +
Sbjct: 101 VICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADV-EQS-----MGL 151

Query: 80  GDERGSTPLHIAA-GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKD 132
            +      L   +   G+    +   +     +  R+   ET ++ AA HG + 
Sbjct: 152 MNSGAVYALWDYSAEFGDELSFREGESVT---VLRRDGPEETDWWWAALHGQEG 202

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 50/188 (26%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVR-----------IIHEKQQLKVLKIG----DERGST 86
              G   +H+AV   + ++V  LV            +++E  + +V +IG      +G T
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT 140

Query: 87  PLHIAAGLGNVSMCKCIAT------ADPRLIGERNHENETPFFLAARHGHKDA--FLCLH 138
            LH   GLG       +        A       ++  +ETP   A    +++A   +   
Sbjct: 141 ALHWCVGLGPEY--LEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 139 YLC---ASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNE 189
                   +D        K G + LH+A     + D+A        +       VN  + 
Sbjct: 196 VPSKSSLRLD-----YANKQGNSHLHWA-ILINWEDVA-------MRFVEMGIDVNMEDN 242

Query: 190 RGVSPLHL 197
               PL+L
Sbjct: 243 EHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 6e-12
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 38/161 (23%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
                  +H+A   GQ + V  L+        +         +  G T LH+A   G V 
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ---------NRFGCTALHLACKFGCVD 67

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNG 156
             K +A+           +   + P  LA      D    +  L     +         G
Sbjct: 68  TAKYLASVGEV---HSLWH--GQKPIHLAVMANKTD---LVVALVEGAKE--------RG 111

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
           +       +     ++        E   +  + +G + LH 
Sbjct: 112 QMPESLL-NECDEREVN-------EIGSHVKHCKGQTALHW 144

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 25/227 (11%), Positives = 52/227 (22%), Gaps = 60/227 (26%)

Query: 4   GIDID-QLKKG---LFKSAMKGKWNEVVENY--GKDDRIHEARI---TRSGGTALHIAVS 54
           G     + K     L ++       E ++             R+    + G + LH A+ 
Sbjct: 163 GASPTAKDKADETPLMRAMEFRN-REALD-LMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220

Query: 55  DGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPR 109
              E++    V +   ++ +         D   + PL+++     V + K +   T    
Sbjct: 221 INWEDVAMRFVEMGIDVNME---------DNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271

Query: 110 LIGERNH----------ENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNG 156
           +     H                  AA    ++    L  L      V           G
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE---VLQLLQEKLDEVV-----RSLNTG 323

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
                          +                 V   +        +
Sbjct: 324 AGGAVKR-KKKAAPAVK-------RMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 17/178 (9%), Positives = 45/178 (25%), Gaps = 33/178 (18%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
            + +D   K+G   L  + +     +V       G D  ++           L+++V   
Sbjct: 201 SLRLDYANKQGNSHLHWAILINW-EDVAMRFVEMGID--VNME--DNEHTVPLYLSVRAA 255

Query: 57  QEEIVEDLV-RIIHEKQQLKVLKIG------DERGSTPLHIAAGLGNVSMCKCIAT--AD 107
              + ++L+ +      Q      G             +  AA      + + +     +
Sbjct: 256 MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE 315

Query: 108 PRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGETILHYA 163
              +    +          +                A V      +R ++       +
Sbjct: 316 ---VVRSLNTGAGGAVKRKKKAAPAVKRMKLAP--SAPVR-----TRSRSRARSSAVS 363

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 35/167 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L+IAV +   EI + L+     I+ +         +    +P   A   G   +  
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDRGADINLQ---------NSISDSPYLYAGAQGRTEILA 89

Query: 102 C---IATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNG 156
                AT D   + + N         AA  GH D    L        +D      +   G
Sbjct: 90  YMLKHATPD---LNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-REDID-----FQNDFG 140

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
            T L  A+       L   I+ L   L       +  +  G + +  
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKL---LMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.4 bits (158), Expect = 7e-12
 Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 43/179 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            G  L  A     +++ E L      + E          D  G+TPL+IA    ++ + K
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEV---------DTEGNTPLNIAVHNNDIEIAK 56

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKD--AFLCLHYLCASVDDGYN-YSRRKNG 156
             I   AD   I  +N  +++P+  A   G  +  A++  H          +     + G
Sbjct: 57  ALIDRGAD---INLQNSISDSPYLYAGAQGRTEILAYMLKH-------ATPDLNKHNRYG 106

Query: 157 ETILHYAISGYYFVDLAFQIIHLYEKL-------VNFVNERGVSPLHLLATKPNAFRSG 208
              L  A +    +D         + L       ++F N+ G + L   A         
Sbjct: 107 GNALIPA-AEKGHIDNV-------KLLLEDGREDIDFQNDFGYTALI-EAVGLREGNQL 156

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 7e-10
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVL 77
           E++     +   D +++    R GG AL  A   G  + V+ L+      I  +      
Sbjct: 86  EILAYMLKHATPD-LNKH--NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ------ 136

Query: 78  KIGDERGSTPLHIAAGLGNVS-MCKCIAT------ADPRLIGERNHENETPFFLAARHGH 130
              ++ G T L  A GL   + + + I        AD      +++   T    A + G+
Sbjct: 137 ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGY 190

Query: 131 KD 132
            +
Sbjct: 191 TE 192

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 33/133 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI----IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
             +    A + G+ EI+  +++     +++          +  G   L  AA  G++   
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKH---------NRYGGNALIPAAEKGHIDNV 122

Query: 101 KC---IATADPRLIGERNHENETPFFLAA-----RHGHKD--AFLCLHYLCASVDDGYNY 150
           K        D   I  +N    T    A         ++D    L  +   A        
Sbjct: 123 KLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN--GADQS----- 172

Query: 151 SRRKNGETILHYA 163
            +  +G T + YA
Sbjct: 173 IKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 14/89 (15%)

Query: 79  IGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--F 134
           +        L  A       + + +         + E + E  TP  +A  +   +    
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ---VDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 135 LCLHYLCASVDDGYNYSRRKNGETILHYA 163
           L      A ++      +    ++   YA
Sbjct: 58  LIDR--GADIN-----LQNSISDSPYLYA 79

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 23/88 (26%)

Query: 25  EVVE---NYGKDDRIHEARITRSGGTALHIAV-----SDGQEEIVEDLVRI---IHEKQQ 73
           + V+     G++D I        G TAL  AV     +   ++IV+ L+        K  
Sbjct: 120 DNVKLLLEDGRED-IDFQ--NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-- 174

Query: 74  LKVLKIGDERGSTPLHIAAGLGNVSMCK 101
                  D  G T +  A   G   + K
Sbjct: 175 -------DNSGRTAMDYANQKGYTEISK 195

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 28/170 (16%)

Query: 12  KGLFKSAMKGKWNEVVE--NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR--- 66
           + +  +AM G + + +E    G +D+    + +      L     + + +I   L+    
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLK-SNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 67  IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--------ADPRLIGERNHEN 118
            I  +          + G+T        G   +              AD   I       
Sbjct: 67  DIKSR---------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPY 114

Query: 119 ETPFFLAARHGHKDAFLCLHYLCASVDD-GYNYSRR-KNGETILHYAISG 166
           +   F    +   D    +          G     + K G T L +    
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 26/169 (15%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
            S    +  A   G  E   +L    +E ++           S  L+      N      
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKE-------SVLKSNILYDVLRNNNDEARYK 56

Query: 103 IAT------ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR-KN 155
           I+       AD   I  R  E  T FF   + G  D           ++ G + +   K 
Sbjct: 57  ISMFLINKGAD---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113

Query: 156 GETILHYAISGYYFVDLAFQIIHLYEKL-------VNFVNERGVSPLHL 197
            + ++   I  Y+  +   ++I LY+ +       +   ++ G++ L  
Sbjct: 114 YKIVVFKNIFNYFVDEN--EMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 10/104 (9%), Positives = 20/104 (19%), Gaps = 20/104 (19%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVL-------KIGDERGSTPLHIAAGL 94
           T+ G T        G  +I           +  K+            +     +      
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTT-------ELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 95  GNVSMCKCIATADPRL------IGERNHENETPFFLAARHGHKD 132
             V   + I             +  ++    T      R     
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 43  RSGGTALHIAVSDGQEEIVE--DLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           +     +   + +   +  E   L ++I  +  L++  I D+ G T L            
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIAL 170

Query: 101 K 101
           K
Sbjct: 171 K 171

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 16/93 (17%)

Query: 117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQI 176
                   AA  G  + FL L       + GY          IL+  +      +  ++I
Sbjct: 5   SEYRTVSAAAMLGTYEDFLEL------FEKGYEDKESVLKSNILYDVLR-NNNDEARYKI 57

Query: 177 IHLYEKL------VNFVNERGVSPLHLLATKPN 203
                 L      +    + G +    L     
Sbjct: 58  SMF---LINKGADIKSRTKEGTTLFFPLFQGGG 87

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.9 bits (162), Expect = 4e-12
 Identities = 30/171 (17%), Positives = 49/171 (28%), Gaps = 49/171 (28%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
               +  A   G  E   +LV     + +          D+   T LH AA    + + K
Sbjct: 9   STWDIVKATQYGIYERCRELVEAGYDVRQP---------DKENVTLLHWAAINNRIDLVK 59

Query: 102 CIATADPRLIG-------ERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSR 152
                    I             N TP   A R GH      L  +   A          
Sbjct: 60  Y-------YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG--ADPS-----LI 105

Query: 153 RKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
              G + +H A + +    +          L      V+ +++ G++PL  
Sbjct: 106 DGEGCSCIHLA-AQFGHTSIV-------AYLIAKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 40/169 (23%), Positives = 58/169 (34%), Gaps = 42/169 (24%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
              T LH A   G   +V  L++                 D  G + +H+AA  G+ S+ 
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLI---------DGEGCSCIHLAAQFGHTSIV 125

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKN 155
              IA   D   +   +    TP   AA   H         L     SV+ G  Y    +
Sbjct: 126 AYLIAKGQD---VDMMDQNGMTPLMWAAYRTHS--VDPTRLLLTFNVSVNLGDKY----H 176

Query: 156 GETILHYA-ISGYYFVDLAFQIIHLYEKL------VNFVNERGVSPLHL 197
             T LH+A ++G         +I     L      V+  N +G S L L
Sbjct: 177 KNTALHWAVLAGN------TTVI---SLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.1 bits (147), Expect = 4e-10
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 34/131 (25%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G + +H+A   G   IV  L+     +            D+ G TPL  AA   +     
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMM---------DQNGMTPLMWAAYRTH---SV 156

Query: 102 CIAT------ADPRLIGERNHEN-ETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSR 152
                          +   +  +  T    A   G+      L      A+VD     ++
Sbjct: 157 DPTRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVD-----AQ 206

Query: 153 RKNGETILHYA 163
              GE+ L  A
Sbjct: 207 NIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 2e-08
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 17/94 (18%)

Query: 45  GGTALHIAVSDG-QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           G T L  A       +    L+     ++               +T LH A   GN ++ 
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG--------DKYHKNTALHWAVLAGNTTVI 193

Query: 101 KCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
             +  A A+   +  +N + E+   LA +  +  
Sbjct: 194 SLLLEAGAN---VDAQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 9e-08
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 4   GIDIDQL-KKG---LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDG 56
           G D+D + + G   L  +A +    +       +                TALH AV  G
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHWAVLAG 188

Query: 57  QEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
              ++  L+     +  +         + +G + L +A    NV M  
Sbjct: 189 NTTVISLLLEAGANVDAQ---------NIKGESALDLAKQRKNVWMIN 227

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 1e-07
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 27/127 (21%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDA--FLC 136
           D+  +  +  A   G    C+ +  A  D   + + + EN T    AA +   D   +  
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------VNFVNER 190
                A VD            T LH+A +    + +         +L       + ++  
Sbjct: 63  SK--GAIVDQLGG----DLNSTPLHWA-TRQGHLSMV-------VQLMKYGADPSLIDGE 108

Query: 191 GVSPLHL 197
           G S +HL
Sbjct: 109 GCSCIHL 115

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 28/127 (22%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
                  A+ +G  + V+D V     ++            E G  PLH AA  G + + +
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRT---------LEGGRKPLHYAADCGQLEILE 57

Query: 102 CI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNG 156
            +    AD   I   +  + TP   A   GH     C+  L    A         +  +G
Sbjct: 58  FLLLKGAD---INAPDKHHITPLLSAVYEGHVS---CVKLLLSKGADKT-----VKGPDG 106

Query: 157 ETILHYA 163
            T     
Sbjct: 107 LTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G   LH A   GQ EI+E L+     I+           D+   TPL  A   G+VS  K
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAP---------DKHHITPLLSAVYEGHVSCVK 90

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKD 132
             ++  AD      +  +  T F        K 
Sbjct: 91  LLLSKGAD---KTVKGPDGLTAFEATDNQAIKA 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 5e-12
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
             T L +A   G E  ++ LV     + +K         D  GST L  A     + + +
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDKLEDK---------DIEGSTALIWAVKNNRLGIAE 85

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
             ++  ++   +  ++   +TP   +   G+ +   FL  H   A+V+      R   GE
Sbjct: 86  KLLSKGSN---VNTKDFSGKTPLMWSIIFGYSEMSYFLLEH--GANVN-----DRNLEGE 135

Query: 158 TILHYA 163
           T L  A
Sbjct: 136 TPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 9e-12
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G TAL  AV + +  I E L+     ++ K         D  G TPL  +   G   M  
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTK---------DFSGKTPLMWSIIFGYSEMSY 118

Query: 102 C-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGE 157
             +   A+   + +RN E ETP  +A+++G  +    L      A +      +R   G 
Sbjct: 119 FLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADIS-----ARDLTGL 168

Query: 158 TILHYA 163
           T    A
Sbjct: 169 TAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.3 bits (145), Expect = 2e-10
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 39  ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
           + + ++G     I       + ++ L    + +         D    TPL +A  LG  +
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL---RNYR---------DSYNRTPLMVACMLGMEN 49

Query: 99  MCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
                +        + +++ E  T    A ++        L      ++V+     ++  
Sbjct: 50  AIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVN-----TKDF 99

Query: 155 NGETILHYA 163
           +G+T L ++
Sbjct: 100 SGKTPLMWS 108

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 17/93 (18%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T L  ++  G  E+   L+     ++++         +  G TPL +A+  G   + K
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDR---------NLEGETPLIVASKYGRSEIVK 151

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
            +    AD   I  R+    T    A   G ++
Sbjct: 152 KLLELGAD---ISARDLTGLTAEASARIFGRQE 181

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 32/129 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
               LH A +    +IV+ L+       +          D++G+T L+ A   GN+   K
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQF---------DDKGNTALYYAVDSGNMQTVK 112

Query: 102 CIATADPRLIGER-------NHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK 154
                    + +            +T F+ A                  + +  +     
Sbjct: 113 L-------FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF------LSEIPSTFDLA 159

Query: 155 NGETILHYA 163
              + +H  
Sbjct: 160 ILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 29/130 (22%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
              G +A + A++D    +V  L+      +           +     PLH AA L +  
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---------E--NEFPLHQAATLEDTK 76

Query: 99  MCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
           + K  + +  D     + + +  T  + A   G+               +         K
Sbjct: 77  IVKILLFSGLD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLM-----FYGK 126

Query: 155 NG-ETILHYA 163
            G +T  ++A
Sbjct: 127 TGWKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 17/120 (14%), Positives = 27/120 (22%), Gaps = 25/120 (20%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT- 105
           T+ + AV      IV   +                    + +HI    G+V M   +   
Sbjct: 131 TSFYHAVMLNDVSIVSYFL-------SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 106 -ADPRLIGERNHENETP-FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA 163
                     N     P   LA  +   +    L  L              N  +     
Sbjct: 184 MTS---TNTNNSLLFIPDIKLAIDNKDIE---MLQALF---------KYDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 9/125 (7%), Positives = 32/125 (25%), Gaps = 30/125 (24%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTP-LHIAAGLGNVSMC 100
             + +HI + +G  +++  L+      +           +     P + +A    ++ M 
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTN---------NSLLFIPDIKLAIDNKDIEML 211

Query: 101 KCIATADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRKNGET 158
           +        L  + +    +           +    +   +           S     + 
Sbjct: 212 QA-------LF-KYDINIYSANLENVLLDDAEIAKMIIEKH--VEYK-----SDSYTKDL 256

Query: 159 ILHYA 163
            +   
Sbjct: 257 DIVKN 261

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.4 bits (148), Expect = 1e-11
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 17/94 (18%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
           +G T LH+A  +G  E+V+ L+     ++ K         D+ G TPLH+AA  G++ + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVV 51

Query: 101 KC-IAT-ADPRLIGERNHENETPFFLAARHGHKD 132
           K  +   AD   +  ++    TP  LAAR+GH +
Sbjct: 52  KLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE 82

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.0 bits (108), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G T LH+A  +G  E+V+ L+     ++ K         D+ G TPLH+AA  G++ + K
Sbjct: 35  GRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVVK 85

Query: 102 C 102
            
Sbjct: 86  L 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)

Query: 84  GSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC 141
           G TPLH+AA  G++ + K +  A AD   +  ++    TP  LAAR+GH +    +  L 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE---VVKLLL 55

Query: 142 ---ASVDDGYNYSRRKNGETILHYA 163
              A V+     ++ KNG T LH A
Sbjct: 56  EAGADVN-----AKDKNGRTPLHLA 75

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 30/131 (22%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
                  L  A + G+ E V  L+      +           +  G  P+ +   +G+  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAP---------NSYGRRPIQVMM-MGSAR 58

Query: 99  MCKCI--ATADPRLIGERNHENET-PFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSR 152
           + + +    A+       +    T P   AAR G  D    L  L    A +D      R
Sbjct: 59  VAELLLLHGAE---PNCADPATLTRPVHDAAREGFLD---TLVVLHRAGARLD-----VR 107

Query: 153 RKNGETILHYA 163
              G   +  A
Sbjct: 108 DAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 31/124 (25%)

Query: 18  AMKGKWNEVVE---NYGKDDRIHEARITRSGGT-ALHIAVSDGQEEIVEDLVRI---IHE 70
            M G    V E    +G +   + A    +  T  +H A  +G  + +  L R    +  
Sbjct: 52  MMMGSA-RVAELLLLHGAE--PNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARH 128
           +         D  G  P+ +A  LG+  + + +  A                   + A  
Sbjct: 107 R---------DAWGRLPVDLAEELGHRDVARYLRAAAGGT--------RGSNHARIDAAE 149

Query: 129 GHKD 132
           G  D
Sbjct: 150 GPSD 153

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 30/130 (23%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
            S    L  A + GQ E V  L+      +           +  G  P+ +   +G+  +
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNAL---------NRFGRRPIQVMM-MGSAQV 59

Query: 100 CKCI--ATADPRLIGERNHENET-PFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRR 153
            + +    A+       +    T P   AAR G  D    L  L    A +D        
Sbjct: 60  AELLLLHGAE---PNCADPATLTRPVHDAAREGFLD---TLVVLHRAGARLD-----VCD 108

Query: 154 KNGETILHYA 163
             G   +  A
Sbjct: 109 AWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 43  RSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGST-PLHIAAGLGNVS 98
           R G   + +    G  ++ E L+      +           D    T P+H AA  G + 
Sbjct: 43  RFGRRPIQVM-MMGSAQVAELLLLHGAEPNCA---------DPATLTRPVHDAAREGFLD 92

Query: 99  MCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
               +  A A    +   +     P  LA   GH+D
Sbjct: 93  TLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRD 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 21/92 (22%)

Query: 18  AMKGKWNEVVE---NYGKDDRIHEARITRSGGT-ALHIAVSDGQEEIVEDLVRI---IHE 70
            M G   +V E    +G +   + A    +  T  +H A  +G  + +  L R    +  
Sbjct: 52  MMMGSA-QVAELLLLHGAE--PNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
                     D  G  P+ +A   G+  + + 
Sbjct: 107 C---------DAWGRLPVDLAEEQGHRDIARY 129

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 32/131 (24%)

Query: 79  IGDERGSTPLHIAAGLGNVSMCKC-IAT-ADPRLIGERNHENETPFFLAARHGHKDAFLC 136
           +        L  AA  G V   +  +   AD       N     P  +    G       
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQ---V 59

Query: 137 LHYLC---ASVDDGYNYSRRKNGETI-LHYAISGYYFVDLAFQIIHLYEKL------VNF 186
              L    A  +            T  +H A +   F+D           L      ++ 
Sbjct: 60  AELLLLHGAEPN-----CADPATLTRPVHDA-AREGFLDTL-------VVLHRAGARLDV 106

Query: 187 VNERGVSPLHL 197
            +  G  P+ L
Sbjct: 107 CDAWGRLPVDL 117

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           G TALH AV  G  EIV+ LV+    ++           D  G TPLH AA   NV +CK
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAA---------DSDGWTPLHCAASCNNVQVCK 120

Query: 102 CIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI 159
            +    A    +   + +           G+      L+ +   +               
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK-----GVIYA 175

Query: 160 LHYA 163
           L   
Sbjct: 176 LWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 33/140 (23%)

Query: 37  HEARI--TRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIA 91
           H  R+         L  +  +G+ ++V+ ++                  ++ G T LH A
Sbjct: 27  HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP---------NDEGITALHNA 77

Query: 92  AGLGNVSMCKCIATADPRLIG------ERNHENETPFFLAARHGHKDA--FLCLHYLCAS 143
              G+  + K        L+         + +  TP   AA   +     FL      A+
Sbjct: 78  VCAGHTEIVKF-------LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAA 128

Query: 144 VDDGYNYSRRKNGETILHYA 163
           V                   
Sbjct: 129 VFAMTYSD--MQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 31/129 (24%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG-----DERGSTPLHIAAGLGNVS 98
           +G  +L         +   +             +  G     +      L  ++  G   
Sbjct: 4   TGQVSLPPGKRTNLRKTGSER------------IAHGMRVKFNPLPLALLLDSSLEGEFD 51

Query: 99  MCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDA--FLCLHYLCASVDDGYNYSRRK 154
           + + I     D       N E  T    A   GH +   FL       +V+     +   
Sbjct: 52  LVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVN-----AADS 101

Query: 155 NGETILHYA 163
           +G T LH A
Sbjct: 102 DGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 12/88 (13%), Positives = 17/88 (19%), Gaps = 17/88 (19%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPRLIG-----ERNHENETPFFLAARHGHKDAFL 135
           +  G   L                      I      + N         ++  G  D   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSE-------RIAHGMRVKFNPLPLALLLDSSLEGEFDLVQ 54

Query: 136 CLHYLCASVDDGYNYSRRKNGETILHYA 163
            + Y                G T LH A
Sbjct: 55  RIIYEVDDPS-----LPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA 106
                 + +G  +  + L  +  +        I ++     L       +  +   +   
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKM------GIMNKGVIYALWDYEPQNDDEL--PMKEG 192

Query: 107 DPRLIGERNHENETPFFLAARHGHKDAFLCLHYL 140
           D   I  R  E+E   +  AR   K+ ++  + L
Sbjct: 193 DCMTIIHREDEDEIE-WWWARLNDKEGYVPRNLL 225

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 17/107 (15%)

Query: 37  HEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDERGSTPLHIAAG 93
             + +    G  L  A   GQ++ V  L+     +  K         D+ GSTPLH+AA 
Sbjct: 16  RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK---------DKNGSTPLHLAAR 66

Query: 94  LGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKDAFLCLH 138
            G++ + K +  A AD   +  ++   +T F ++  +G++D    L 
Sbjct: 67  NGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 36  IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG 95
           I  A       TALH+AV       +  +  ++     L        +GST LH      
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ---TGKGSTALHYCCLTD 216

Query: 96  NVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
           N    K +    A   +    N   ETP  +A R  H+ 
Sbjct: 217 NAECLKLLLRGKASIEI---ANESGETPLDIAKRLKHEH 252

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 36  IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEK--QQLKVLKIGDERGSTPLHIAAG 93
           +        G   L   +    E +++D+  ++     + L          +  L +A  
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328

Query: 94  LGNVSMCKC-IATADPRLIGERNHENETPFFLAARHGHKD 132
           LGN   C   ++      + + N      +++    G  D
Sbjct: 329 LGNQGACALLLSIPSVLALTKAN-----NYYINETGGRLD 363

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 35/196 (17%)

Query: 25  EVVEN-YGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDER 83
            V+            A I      A  +A  +G   ++  L  +   +    +       
Sbjct: 142 HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI----QAE 197

Query: 84  GSTPLHIAA-GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA 142
                  AA G G+ ++   +      L     H           +G K     +     
Sbjct: 198 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH--------EFEYGEKYVNPFIARHVN 249

Query: 143 SVDDGYN---------------YSRRKNGETILHYAI--SGYYFVDLAFQIIHLYEKL-- 183
            + + ++                S    G  +L   I  +    +D    ++ +      
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309

Query: 184 --VNFVNERGVSPLHL 197
                +       L L
Sbjct: 310 APTATIPGDANELLRL 325

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
                LH+AV    +  +  +  II     L         G+T LH AA        K +
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK---AADGNTALHYAALYNQPDCLKLL 245

Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
               A        N   ET   +A +  HK+
Sbjct: 246 LKGRALVGT---VNEAGETALDIARKKHHKE 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 41/348 (11%), Positives = 98/348 (28%), Gaps = 79/348 (22%)

Query: 465 KNGITEIVEKILKSFPVA-ILDM------NSEKKNVMLLA-VENRQRHVYQLLLKTAIIQ 516
           K+ ++   +  + +F    + DM        E  ++++     +    ++  LL     +
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--E 76

Query: 517 ETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYND 576
           E V + V++           L  +  +L+  + ++        E  + SM    ++   D
Sbjct: 77  EMVQKFVEE----------VLRINYKFLM--SPIK-------TEQRQPSMMTRMYIEQRD 117

Query: 577 QNKSAKDVFTETH---KKLVQAGGQWLTQTSEACTV----MA-----ALIATVAFTSS-- 622
           +  +   VF + +    +      Q L +   A  V    +       +   V  +    
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 623 SNVPGGVN----GETGDPN--LKDQLAFNVFAFSSLVALSFSMTALVVFFAIKTSRFQEQ 676
             +   +          P   L+           +  + S   + + +      +  +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 677 DFRKDLPEKLL---------------LG----LTSLFVSIASMMISFWAGHFLVV----- 712
              K     LL               L     LT+ F  +   + +    H  +      
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 713 --RDKLKS--AAFPVYAVTCLPVTLFAIARFPLYYYLIWAIFKKVPQR 756
              D++KS    +       LP     +   P    +I    +     
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLAT 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 69/215 (32%)

Query: 414 DTSLTDHNVVTDTHKLSRNNGKNSEDRNEG--------GKTGSTIPDTVKRETPILIAAK 465
              +TD      T  +S ++   +   +E               +P  V    P  ++  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-- 331

Query: 466 NGITEIVEKILKSFPVAI---LDMNSEK-KNVMLLAVEN----RQRHVYQLLLKTAIIQE 517
                I+ + ++           +N +K   ++  ++        R ++  L   ++   
Sbjct: 332 -----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPP 383

Query: 518 TVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQ 577
           +                          IP   L + W       V   +  +   +Y+  
Sbjct: 384 SA------------------------HIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLV 417

Query: 578 NKSAK-------DVFTET----------HKKLVQA 595
            K  K        ++ E           H+ +V  
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 31/211 (14%), Positives = 64/211 (30%), Gaps = 59/211 (27%)

Query: 75  KVLKI--GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG--- 129
            +L +   D   S  + +   L   S+ +                 E+   +        
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-------------QPKESTISI---PSIYL 433

Query: 130 ----HKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL-----Y 180
                 +    LH    S+ D YN  +  + + ++   +  Y++  +     HL      
Sbjct: 434 ELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHP 487

Query: 181 EKLVNF----VNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQH 236
           E++  F    ++         L  K    R  S     +G I     ++ LQ+   Y  +
Sbjct: 488 ERMTLFRMVFLD------FRFLEQK---IRHDSTAWNASGSI-----LNTLQQLKFYKPY 533

Query: 237 LFTTIKKQTNYPENY-ETCLNFIRLLKTMVI 266
               I       E      L+F+  ++  +I
Sbjct: 534 ----ICDNDPKYERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 84/654 (12%), Positives = 176/654 (26%), Gaps = 193/654 (29%)

Query: 53  VSDGQEEIVEDLVRIIHEKQQLK-VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLI 111
           V +   + V+D+ + I  K+++  ++   D    T                      RL 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---------------------RLF 68

Query: 112 G--ERNHENETPFFLAARHGHKDAFLC--LHYLC---ASVDDGYNYSRRKNGETILHYAI 164
                  E     F+         FL   +       + +   Y   R +     L+   
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDN 123

Query: 165 SGY--YFVDLAFQIIHLYEKLVNFVNERGVSPLH--------LLATKPNAFRSGS-HLGL 213
             +  Y V      + L + L+     + V  +          +A   +   S      +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVAL--DVCLSYKVQCKM 180

Query: 214 CTGIIY----HCISVDKLQEETSYDQHLFTTIKKQ--------TNYPENYETCLNFIRLL 261
              I +    +C S + + E     Q L   I           +N      +    +R L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 262 ------KTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFP 315
                 +  ++VL             + ++ +     +            +  +      
Sbjct: 238 LKSKPYENCLLVL------------LNVQNAKAWNAFN------------LSCK------ 267

Query: 316 PNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYV 375
                    + L ++   V   L +     I  +    T +   +  LL +       Y+
Sbjct: 268 ---------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-------YL 311

Query: 376 GGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLT-------DHNVVTDTHK 428
             +P   P    E   T P  +         +  +   D   T       + + +T   +
Sbjct: 312 DCRPQDLPR---EVLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 429 LSRNNGKNSEDRNEGGKTGSTIPDTVKRETPIL-IAAKNGITEIVEKILKSFPVAIL--- 484
            S N  + +E R +     S  P +    T +L +   + I   V  ++       L   
Sbjct: 361 SSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 485 DMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSAL------------- 531
                  ++  + +E + +   +  L  +I+      K  D  +                
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 532 HLAATLGDHK-----------------------PWLIPGAALQMQWELKWYE-FVRDSMP 567
           HL       +                        W   G+ L    +LK+Y+ ++ D+ P
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 568 ---------FHFFVRYNDQNKSAKDVFTETHKKLVQAGGQWLTQTSEACTVMAA 612
                      F  +  +    +K      +  L++     L    EA    A 
Sbjct: 540 KYERLVNAILDFLPKIEENLICSK------YTDLLRIA---LMAEDEAIFEEAH 584

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
              T L  A +       E L+      Q    +   D  G  PLH A  LG+  +    
Sbjct: 234 DNATPLIQATAANSLLACEFLL------QNGANVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 104 --ATADPRLIGERNHENETPFFLAARHGHKD 132
               AD      R+ E   P  +A    + D
Sbjct: 288 LKRGADLGA---RDSEGRDPLTIAMETANAD 315

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 36  IHEARITRSGGTALHIAV---SDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAA 92
           +            LH+AV   +     +V+ ++      Q    L      G+T LH AA
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFII------QNGGHLDAKAADGNTALHYAA 215

Query: 93  GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKD 132
                   K +       +G  N   ET   +A +  HK+
Sbjct: 216 LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKE 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	763
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-54  Score=478.82  Aligned_cols=381  Identities=19%  Similarity=0.186  Sum_probs=314.3

Q ss_pred             CCCChh----hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccc
Q 004286            3 TGIDID----QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLK   78 (763)
Q Consensus         3 ~~~d~~----~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~   78 (763)
                      +|++++    ...+|||.||..|+.+.|+.|+..  +++++..|..|.||||+||..|+.+++++|+++|      ++++
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~   74 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK------AKVN   74 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT------CCSS
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCC
Confidence            456654    357899999999999999999988  8899999999999999999999999999999998      6789


Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCCh
Q 004286           79 IGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGET  158 (763)
Q Consensus        79 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~T  158 (763)
                      .+|..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++++++.+     ..+..|.|
T Consensus        75 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~g~t  148 (437)
T 1n11_A           75 AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFT  148 (437)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-----CCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-----CCCCCCCC
Confidence            9999999999999999999999999999998 89999999999999999999999999999999988     88999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchh
Q 004286          159 ILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLF  238 (763)
Q Consensus       159 pLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~  238 (763)
                      |||+|+..|+. +++++|+++ +++++..+.+|.||||+|+..++       .+++++|+++|++++..+..        
T Consensus       149 ~L~~A~~~g~~-~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~--------  211 (437)
T 1n11_A          149 PLHVAAKYGKV-RVAELLLER-DAHPNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWN--------  211 (437)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTT--------
T ss_pred             HHHHHHHcCCH-HHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCC--------
Confidence            99999999999 999999994 99999999999999999999985       79999999999998876532        


Q ss_pred             hhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCC
Q 004286          239 TTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNY  318 (763)
Q Consensus       239 ~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~  318 (763)
                            +.+|++++...+.                                                             
T Consensus       212 ------g~t~L~~A~~~~~-------------------------------------------------------------  224 (437)
T 1n11_A          212 ------GYTPLHIAAKQNQ-------------------------------------------------------------  224 (437)
T ss_dssp             ------CCCHHHHHHHTTC-------------------------------------------------------------
T ss_pred             ------CCCHHHHHHHcCC-------------------------------------------------------------
Confidence                  4566666643211                                                             


Q ss_pred             CchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCccccc
Q 004286          319 GTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAI  397 (763)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~  397 (763)
                                                            .++++.|++.+.+.+ .|..|.||||+|+..++.        
T Consensus       225 --------------------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--------  258 (437)
T 1n11_A          225 --------------------------------------VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA--------  258 (437)
T ss_dssp             --------------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------
T ss_pred             --------------------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCH--------
Confidence                                                  267888888877544 377788888888877443        


Q ss_pred             ccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHH
Q 004286          398 VDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILK  477 (763)
Q Consensus       398 ~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~  477 (763)
                                    +++++|++++.                         +.+..|..|.||||+|++.|+.+++++|++
T Consensus       259 --------------~~v~~Ll~~~~-------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          259 --------------EMVALLLSKQA-------------------------NGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             --------------HHHHHHHTTTC-------------------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------HHHHHHHhcCC-------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                          34444444443                         233467789999999999999999999998


Q ss_pred             hCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCCCcCCchhhhhhhhhhH
Q 004286          478 SFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELK  557 (763)
Q Consensus       478 ~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~  557 (763)
                      . +.+++.+|..|+||||+|+.+|+.++|++|++.++    ++|.+|..|+||||+|++.|+.+++             +
T Consensus       300 ~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~n~~~~~g~t~L~~A~~~g~~~iv-------------~  361 (437)
T 1n11_A          300 H-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPLHQAAQQGHTDIV-------------T  361 (437)
T ss_dssp             H-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHH-------------H
T ss_pred             C-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHCChHHHH-------------H
Confidence            5 66678888899999999999999999999999887    6888899999999999998873332             2


Q ss_pred             HHHHHhhcCCccccccccCCCCChhhhhhhhh
Q 004286          558 WYEFVRDSMPFHFFVRYNDQNKSAKDVFTETH  589 (763)
Q Consensus       558 ~~~~~~~~~~~~~~~~~n~~g~tp~d~~~~~~  589 (763)
                      |  +++....+   +.+|.+|.||++++.+..
T Consensus       362 ~--Ll~~ga~~---~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          362 L--LLKNGASP---NEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             H--HHHTTCCS---CCCCSSSCCHHHHHHHTT
T ss_pred             H--HHHCcCCC---CCCCCCCCCHHHHHHHcC
Confidence            2  22333333   478889999999887553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-50  Score=449.54  Aligned_cols=342  Identities=20%  Similarity=0.198  Sum_probs=305.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..+|||.||..|+.+.++.|+..  +++++..|..|+||||+|+..|+.++|++|+++|      ++++..|..|.||||
T Consensus        47 ~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t~L~  118 (437)
T 1n11_A           47 VETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN------ANPNLATTAGHTPLH  118 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT------CCTTCCCTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC------CCCCCCCCCCCcHHH
Confidence            46899999999999999999988  8899999999999999999999999999999998      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.++++.|++++++ .+..+..|.||||+|+..|+.+++++|+++|++++     ..+..|.||||+|+..|+.
T Consensus       119 ~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~  192 (437)
T 1n11_A          119 IAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-----AAGKNGLTPLHVAVHHNNL  192 (437)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCSSCCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----CCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999998 88899999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCc
Q 004286          170 VDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPE  249 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~  249 (763)
                       +++++|+++ +++++..+.+|.||||+|+..++       .++++.|+++|++++..+..              +.+|+
T Consensus       193 -~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~~--------------g~t~L  249 (437)
T 1n11_A          193 -DIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAESVQ--------------GVTPL  249 (437)
T ss_dssp             -HHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTT--------------CCCHH
T ss_pred             -HHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCCCC--------------CCCHH
Confidence             999999995 88999999999999999999985       79999999999999876633              55677


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhcc
Q 004286          250 NYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVS  329 (763)
Q Consensus       250 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~  329 (763)
                      +++...+                                                                         
T Consensus       250 ~~A~~~g-------------------------------------------------------------------------  256 (437)
T 1n11_A          250 HLAAQEG-------------------------------------------------------------------------  256 (437)
T ss_dssp             HHHHHTT-------------------------------------------------------------------------
T ss_pred             HHHHHCC-------------------------------------------------------------------------
Confidence            6663321                                                                         


Q ss_pred             chhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCcccccccCCCCCCCCC
Q 004286          330 KPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLE  408 (763)
Q Consensus       330 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~  408 (763)
                                                ..++++.|++++++.+ .|..|.||||+|+..++.                   
T Consensus       257 --------------------------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~-------------------  291 (437)
T 1n11_A          257 --------------------------HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV-------------------  291 (437)
T ss_dssp             --------------------------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH-------------------
T ss_pred             --------------------------CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH-------------------
Confidence                                      1278888998888654 488899999999887543                   


Q ss_pred             CCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCcccccccc
Q 004286          409 GDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNS  488 (763)
Q Consensus       409 g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~  488 (763)
                         .++++|+++++                         +.+..|..|.||||+|+..|+.++|++|++ .+.+++.+|.
T Consensus       292 ---~~~~~Ll~~g~-------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~  342 (437)
T 1n11_A          292 ---PVADVLIKHGV-------------------------MVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTK  342 (437)
T ss_dssp             ---HHHHHHHHHTC-------------------------CTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCT
T ss_pred             ---HHHHHHHhCCc-------------------------cCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCC
Confidence               34445444444                         334567789999999999999999999999 5777899999


Q ss_pred             CCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          489 EKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       489 ~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      .|+||||+|+.+|+.++|++|++.++    +++.+|.+|+||||+|++.|+
T Consensus       343 ~g~t~L~~A~~~g~~~iv~~Ll~~ga----~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          343 LGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHCChHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999998    689999999999999999998

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-43  Score=378.15  Aligned_cols=204  Identities=22%  Similarity=0.146  Sum_probs=175.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCC-CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITR-SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      ..++||.|+..|+.+.|+.||+.  |+++|.++. .|+||||+||..|+.++|++|+++|      ++++.+|..+.+|+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g------a~~~~~~~~~~~~~   96 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATPF   96 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC------CchhhhccCCCchh
Confidence            46789999999999999999988  899988765 5999999999999999999999998      67889999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CccccCCCCChHHHHH
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDG-----YNYSRRKNGETILHYA  163 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~-----~~~~~d~~G~TpLh~A  163 (763)
                      +.++..++..++..+++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++++..     +....+..|.||||+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A  175 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  175 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred             HHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence            999999999999999999998 8999999999999999999999999999999988731     2234567799999999


Q ss_pred             HHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          164 ISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       164 ~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +..|+. +++++||++.|++++.+|..|.||||.++..+..   +....++++|+++|+++|.
T Consensus       176 ~~~g~~-~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~---~~~~~i~~lLl~~gad~n~  234 (337)
T 4g8k_A          176 AEKGHV-EVLKILLDEMGADVNACDNMGRNALIHALLSSDD---SDVEAITHLLLDHGADVNV  234 (337)
T ss_dssp             HHHTCH-HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT---TTHHHHHHHHHHTTCCTTC
T ss_pred             HHCCCH-HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc---ccHHHHHHHHHHCCCCCCC
Confidence            999999 9999999878999999999999999988765431   1223566667777766654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.3e-42  Score=356.15  Aligned_cols=199  Identities=23%  Similarity=0.180  Sum_probs=177.7

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCcccccc-CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARI-TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      +..++|+.|+..|+.+.++.++..  +.+++.. +..|+||||+|+..|+.+++++|+++|      ++++.+|..|.||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~   75 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCH
Confidence            346899999999999999999988  7777776 788999999999999999999999998      6788999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCcccc----------CCCCC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSR----------RKNGE  157 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~----------d~~G~  157 (763)
                      ||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     ..          +..|.
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-----LRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCCCCHHHHHTTCCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-----cccccHHHHHhhccCCC
Confidence            9999999999999999999998 89999999999999999999999999999999988     44          78899


Q ss_pred             hHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          158 TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       158 TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      ||||+|+..|+. +++++|++..|++++..|..|.||||+|+..++.   ....+++++|+++|++++
T Consensus       150 t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~i~~~Ll~~g~~~~  213 (285)
T 1wdy_A          150 TALMDAAEKGHV-EVLKILLDEMGADVNACDNMGRNALIHALLSSDD---SDVEAITHLLLDHGADVN  213 (285)
T ss_dssp             CHHHHHHHHTCH-HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT---TTHHHHHHHHHHTTCCSS
T ss_pred             cHHHHHHHcCCH-HHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc---chHHHHHHHHHHcCCCCC
Confidence            999999999999 9999999977999999999999999999998742   111456666666555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-41  Score=361.04  Aligned_cols=279  Identities=16%  Similarity=0.134  Sum_probs=238.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      ...++||.||..|+.+.++.+|.+. +.+++..|..|+||||+||..|+.++|++|+++|      ++++.+|..|+|||
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L   95 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG------ADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCcHH
Confidence            3578999999999999999999874 7888899999999999999999999999999998      67899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH----
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI----  164 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~----  164 (763)
                      |+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     ..+..|.||+|+|+    
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~~~l~~a~~~~~  169 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-----LVNCHGKSAVDMAPTPEL  169 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCSSHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-----cccCCCCcchHHHhhhhh
Confidence            999999999999999999998 99999999999999999999999999999999998     89999999988764    


Q ss_pred             -----------------HcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCcc
Q 004286          165 -----------------SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKL  227 (763)
Q Consensus       165 -----------------~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~  227 (763)
                                       ..++. +.++.++.. +......+..|.||||+|+..+..    ...+++++|+++|++++. 
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~t~L~~A~~~~~~----~~~~~~~~Ll~~g~~~~~-  242 (351)
T 3utm_A          170 RERLTYEFKGHSLLQAAREADL-AKVKKTLAL-EIINFKQPQSHETALHCAVASLHP----KRKQVAELLLRKGANVNE-  242 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCH-HHHHHHTTT-CCTTCCCTTTCCCHHHHHHHCCST----THHHHHHHHHHTTCCTTC-
T ss_pred             HHHHHhhhcccHHHHHHHhccH-HHHHHHHHh-hcccccCCCCCCCHHHHHHHHhCc----cHHHHHHHHHHcCCCcCC-
Confidence                             44555 555555553 323334566777788877776421    134555555555554442 


Q ss_pred             ccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccc
Q 004286          228 QEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIG  307 (763)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (763)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (351)
T 3utm_A          243 --------------------------------------------------------------------------------  242 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCc
Q 004286          308 AQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQV  387 (763)
Q Consensus       308 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~  387 (763)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (351)
T 3utm_A          243 --------------------------------------------------------------------------------  242 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcC
Q 004286          388 EEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNG  467 (763)
Q Consensus       388 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g  467 (763)
                                                                                      +|..|.||||+|++.|
T Consensus       243 ----------------------------------------------------------------~~~~g~t~L~~A~~~g  258 (351)
T 3utm_A          243 ----------------------------------------------------------------KNKDFMTPLHVAAERA  258 (351)
T ss_dssp             ----------------------------------------------------------------CCTTCCCHHHHHHHTT
T ss_pred             ----------------------------------------------------------------cCCCCCCHHHHHHHcC
Confidence                                                                            3456999999999999


Q ss_pred             hHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhh
Q 004286          468 ITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAAT  536 (763)
Q Consensus       468 ~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~  536 (763)
                      +.++|++|++ .+.+++.+|..|+||||+|+.+|+.+++++|++.++    +++.+|.+|+||||+|..
T Consensus       259 ~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          259 HNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS----DPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHSCH
T ss_pred             CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCCCCCChhhhhhH
Confidence            9999999999 577889999999999999999999999999999998    689999999999999943

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-40  Score=344.12  Aligned_cols=165  Identities=19%  Similarity=0.140  Sum_probs=153.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG-DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      .+|.||||.|+..|+.+++++|++.|      .+++.+ +..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~   75 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            35889999999999999999999998      567777 78899999999999999999999999998 89999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccccc----------ccCC
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFV----------NERG  191 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~----------d~~G  191 (763)
                      ||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++. |++++..          +..|
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g  148 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKV-KALKFLYKR-GANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTCCBHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCCCCHHHHHTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-----ccCcccCCHHHHHHHhCCH-HHHHHHHHh-CCCcccccccHHHHHhhccCC
Confidence            999999999999999999999998     8999999999999999999 999999994 8888887          7889


Q ss_pred             CcHHHHHhcCCCCccCCchHHHHHHHHHc-CCCCCccc
Q 004286          192 VSPLHLLATKPNAFRSGSHLGLCTGIIYH-CISVDKLQ  228 (763)
Q Consensus       192 ~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~  228 (763)
                      .||||+|+..++       .+++++|+++ |++++..+
T Consensus       149 ~t~L~~A~~~~~-------~~~v~~Ll~~~~~~~~~~~  179 (285)
T 1wdy_A          149 ATALMDAAEKGH-------VEVLKILLDEMGADVNACD  179 (285)
T ss_dssp             CCHHHHHHHHTC-------HHHHHHHHHTSCCCTTCCC
T ss_pred             CcHHHHHHHcCC-------HHHHHHHHHhcCCCCCccC
Confidence            999999999985       7999999987 88887655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-41  Score=368.84  Aligned_cols=289  Identities=16%  Similarity=0.183  Sum_probs=225.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCC----------------------ccccccCCCCChHHHHHHHcCCHHHHHHHHHHh
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDR----------------------IHEARITRSGGTALHIAVSDGQEEIVEDLVRII   68 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~----------------------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g   68 (763)
                      ..+|+.++..|+.+.++.++.....                      ...+..|..|+||||+|+..|+ +++++|+.  
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~--  114 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITR--  114 (373)
T ss_dssp             --------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST--
T ss_pred             ccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhcc--
Confidence            4566777766666655554422110                      1123567889999999999665 78887764  


Q ss_pred             hhhccccccccCC-CCCchHHHHHHHcCCHHHHHHHH--------hcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 004286           69 HEKQQLKVLKIGD-ERGSTPLHIAAGLGNVSMCKCIA--------TADPRLIGERNHENETPFFLAARHGHKDAFLCLHY  139 (763)
Q Consensus        69 ~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~  139 (763)
                            .+++.+| ..|+||||+|+..|+.++++.|+        +.|++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus       115 ------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~  187 (373)
T 2fo1_E          115 ------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMK  187 (373)
T ss_dssp             ------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHH
Confidence                  4588888 78999999999999988877776        78888 99999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcc---ccccccccCCCcHHHHHhcCCCCccCCchHHHHHH
Q 004286          140 LCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE---KLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTG  216 (763)
Q Consensus       140 ~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~---~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~  216 (763)
                      +|++++     .+|..|.||||+|+..|+. +++++|++. +   ++++..|.+|.||||+|+..+.    ..+.+++++
T Consensus       188 ~ga~~~-----~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A~~~~~----~~~~~~v~~  256 (373)
T 2fo1_E          188 AGADPT-----IYNKSERSALHQAAANRDF-GMMVYMLNS-TKLKGDIEELDRNGMTALMIVAHNEG----RDQVASAKL  256 (373)
T ss_dssp             TTCCSC-----CCCTTCCCHHHHHHHTTCH-HHHHHHTTS-HHHHHTTSCCCTTSCCHHHHHHHSCS----TTHHHHHHH
T ss_pred             CCCCCc-----ccCCCCCCHHHHHHHCCCH-HHHHHHHhc-CccccChhhcCCCCCCHHHHHHHhCC----cchHHHHHH
Confidence            999998     8999999999999999999 999999985 5   7999999999999999998762    124789999


Q ss_pred             HHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCC
Q 004286          217 IIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTG  296 (763)
Q Consensus       217 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (763)
                      |+++|++++.....                                                                  
T Consensus       257 Ll~~g~~~~~~~~~------------------------------------------------------------------  270 (373)
T 2fo1_E          257 LVEKGAKVDYDGAA------------------------------------------------------------------  270 (373)
T ss_dssp             HHHHTCCSSCCSGG------------------------------------------------------------------
T ss_pred             HHHCCCCccccccc------------------------------------------------------------------
Confidence            99999888753311                                                                  


Q ss_pred             CCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCC
Q 004286          297 DQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVG  376 (763)
Q Consensus       297 ~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G  376 (763)
                                                                                                      
T Consensus       271 --------------------------------------------------------------------------------  270 (373)
T 2fo1_E          271 --------------------------------------------------------------------------------  270 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCC
Q 004286          377 GKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKR  456 (763)
Q Consensus       377 ~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G  456 (763)
                                                                                             ..+..|..|
T Consensus       271 -----------------------------------------------------------------------~~~~~d~~g  279 (373)
T 2fo1_E          271 -----------------------------------------------------------------------RKDSEKYKG  279 (373)
T ss_dssp             -----------------------------------------------------------------------GTSSSSCCC
T ss_pred             -----------------------------------------------------------------------ccCcccccC
Confidence                                                                                   000145679


Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhh
Q 004286          457 ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAAT  536 (763)
Q Consensus       457 ~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~  536 (763)
                      .||||+||..|+.++|++|++..+.+++.+|.+|+||||+|+.+|+.++|++|++.++    +++.+|..|+||||+|+.
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQA  355 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccCCCCCCCCHHHHHHH
Confidence            9999999999999999999998888999999999999999999999999999999998    699999999999999999


Q ss_pred             cCCCC
Q 004286          537 LGDHK  541 (763)
Q Consensus       537 ~g~~~  541 (763)
                      .|+.+
T Consensus       356 ~g~~~  360 (373)
T 2fo1_E          356 NNHHN  360 (373)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            99844

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4e-41  Score=361.40  Aligned_cols=314  Identities=18%  Similarity=0.158  Sum_probs=252.5

Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      +++.+..+..|.|+||.||..|+.+.++.|+...     +.+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus        14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~   87 (351)
T 3utm_A           14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-----NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAK   87 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTT-----TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred             ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhc-----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcc
Confidence            5666667788999999999999999999998752     367899999999999999999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcH
Q 004286          115 NHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSP  194 (763)
Q Consensus       115 ~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~Tp  194 (763)
                      |..|.||||+|+..|+.+++++|+++|++++     ..|..|.||||+|+..|+. +++++|++ .|++++..+..|.||
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACVN-----AMDLWQFTPLHEAASKNRV-EVCSLLLS-HGADPTLVNCHGKSA  160 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCccccCCCCcc
Confidence            9999999999999999999999999999998     8999999999999999999 99999999 599999999999999


Q ss_pred             HHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCC
Q 004286          195 LHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNT  274 (763)
Q Consensus       195 Lh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~  274 (763)
                      +|+|+..+.       .+.+++.....                                         .++....     
T Consensus       161 l~~a~~~~~-------~~~~~~~~~~~-----------------------------------------~~~~~~~-----  187 (351)
T 3utm_A          161 VDMAPTPEL-------RERLTYEFKGH-----------------------------------------SLLQAAR-----  187 (351)
T ss_dssp             HHHCSSHHH-------HHHHHHHHHHH-----------------------------------------HHHHHHH-----
T ss_pred             hHHHhhhhh-------HHHHHhhhccc-----------------------------------------HHHHHHH-----
Confidence            999987642       23333221100                                         0000000     


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhc
Q 004286          275 KKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHT  354 (763)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~  354 (763)
                                                                                                     .
T Consensus       188 -------------------------------------------------------------------------------~  188 (351)
T 3utm_A          188 -------------------------------------------------------------------------------E  188 (351)
T ss_dssp             -------------------------------------------------------------------------------T
T ss_pred             -------------------------------------------------------------------------------h
Confidence                                                                                           0


Q ss_pred             cHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCC
Q 004286          355 WSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNG  434 (763)
Q Consensus       355 ~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~  434 (763)
                      ...+.++.++.....                                                                 
T Consensus       189 ~~~~~~~~~l~~~~~-----------------------------------------------------------------  203 (351)
T 3utm_A          189 ADLAKVKKTLALEII-----------------------------------------------------------------  203 (351)
T ss_dssp             TCHHHHHHHTTTCCT-----------------------------------------------------------------
T ss_pred             ccHHHHHHHHHhhcc-----------------------------------------------------------------
Confidence            011334444443110                                                                 


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCcHHHHHHHc---ChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHh
Q 004286          435 KNSEDRNEGGKTGSTIPDTVKRETPILIAAKN---GITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLK  511 (763)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~---g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~  511 (763)
                                    ....+..|.||||+|+..   +..+++++|++ .+.+++.+|.+|+||||+|+.+|+.+++++|++
T Consensus       204 --------------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  268 (351)
T 3utm_A          204 --------------NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK  268 (351)
T ss_dssp             --------------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                          001355799999999999   67899999999 567788999999999999999999999999999


Q ss_pred             ccchhhhhhccccCCCCchhhhHhhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCccccccccCCCCChhhhhhhhhHH
Q 004286          512 TAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTETHKK  591 (763)
Q Consensus       512 ~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tp~d~~~~~~~~  591 (763)
                      .+.    ++|.+|..|+||||+|++.|+.+++             ++  +++...+   .+.+|++|.||++++.+.-.+
T Consensus       269 ~ga----~~n~~d~~g~t~L~~A~~~~~~~~v-------------~~--Ll~~gad---~~~~~~~g~tal~~a~~~~~~  326 (351)
T 3utm_A          269 HGA----KMNALDSLGQTALHRAALAGHLQTC-------------RL--LLSYGSD---PSIISLQGFTAAQMGNEAVQQ  326 (351)
T ss_dssp             TTC----CTTCCCTTSCCHHHHHHHHTCHHHH-------------HH--HHHTTCC---TTCCCTTSCCHHHHSCHHHHH
T ss_pred             CCC----CCCCcCCCCCCHHHHHHHcCcHHHH-------------HH--HHHcCCC---CCCcCCCCCChhhhhhHHHHH
Confidence            998    7999999999999999999984332             22  2333333   348999999999999776555


Q ss_pred             HHHh
Q 004286          592 LVQA  595 (763)
Q Consensus       592 l~~~  595 (763)
                      ++.+
T Consensus       327 ~l~~  330 (351)
T 3utm_A          327 ILSE  330 (351)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=343.66  Aligned_cols=195  Identities=18%  Similarity=0.146  Sum_probs=153.5

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCC---------ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDR---------IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI   79 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~---------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~   79 (763)
                      +..++||+||..|+.+++.+++...+.         ...+..|..|+||||+||..|+.+++++|++.|      ++++.
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~   87 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG------WAVNI   87 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT------CCSCE
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC------CCCCC
Confidence            457899999999999988886554211         224567899999999999999999999999988      67889


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChH
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI  159 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~Tp  159 (763)
                      +|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++      .+.+|.||
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~g~t~  160 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ------PESDLASP  160 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS------CSCTTSCH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC------CCCCCCCH
Confidence            999999999999999999999999999998 99999999999999999999999999999999987      34569999


Q ss_pred             HHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       160 Lh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      ||+|+..|+. +++++|++ .|++++.+|..|.||||+|+..++       .+++++|+++|++++
T Consensus       161 L~~A~~~g~~-~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          161 IHEAARRGHV-ECVNSLIA-YGGNIDHKISHLGTPLYLACENQQ-------RACVKKLLESGADVN  217 (285)
T ss_dssp             HHHHHHHTCH-HHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTC-------HHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCH-HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCc-------HHHHHHHHHCCCCCC
Confidence            9999999999 99999999 589999999999999999999985       688888888877665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.3e-40  Score=340.47  Aligned_cols=249  Identities=16%  Similarity=0.123  Sum_probs=196.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhc-----cccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCC
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQ-----QLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH  116 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  116 (763)
                      ...|.|+||+|+..|+.+.+..++..+++.-     ....++.+|..|+||||+|+..|+.++++.|++.|++ ++.+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCC
Confidence            5679999999999999877777776654311     1234677899999999999999999999999999998 999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHH
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLH  196 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh  196 (763)
                      .|+||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .+++++.. .+|.||||
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~g~~~~~~-~~g~t~L~  162 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVN-----GVTADWHTPLFNACVSGSW-DCVNLLLQ-HGASVQPE-SDLASPIH  162 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSS-----CCCTTCCCHHHHHHHHTCH-HHHHHHHH-TTCCSSCS-CTTSCHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCHH-HHHHHHHH-CCCCCCCC-CCCCCHHH
Confidence            99999999999999999999999999998     8999999999999999999 99999999 58888764 45999999


Q ss_pred             HHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 004286          197 LLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKK  276 (763)
Q Consensus       197 ~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~  276 (763)
                      +|+..|+       .+++++|+++|++++.                                                  
T Consensus       163 ~A~~~g~-------~~~v~~Ll~~g~~~~~--------------------------------------------------  185 (285)
T 3d9h_A          163 EAARRGH-------VECVNSLIAYGGNIDH--------------------------------------------------  185 (285)
T ss_dssp             HHHHHTC-------HHHHHHHHHTTCCTTC--------------------------------------------------
T ss_pred             HHHHcCC-------HHHHHHHHHCCCCCCC--------------------------------------------------
Confidence            9999985       6888888888876653                                                  


Q ss_pred             CCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccH
Q 004286          277 EPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWS  356 (763)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~  356 (763)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (285)
T 3d9h_A          186 --------------------------------------------------------------------------------  185 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCC
Q 004286          357 VQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKN  436 (763)
Q Consensus       357 ~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~  436 (763)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (285)
T 3d9h_A          186 --------------------------------------------------------------------------------  185 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchh
Q 004286          437 SEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQ  516 (763)
Q Consensus       437 ~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~  516 (763)
                                     .|..|.||||+|+..|+.++|++|++. +.+++ .|..|+||||+|+..++.+++++|++.++  
T Consensus       186 ---------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--  246 (285)
T 3d9h_A          186 ---------------KISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELACLLMDFGA--  246 (285)
T ss_dssp             ---------------CBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             ---------------cCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC--
Confidence                           234699999999999999999999995 55666 48899999999999999999999999988  


Q ss_pred             hhhhccccCCCCchhhhHhhc
Q 004286          517 ETVFRKVDDQGNSALHLAATL  537 (763)
Q Consensus       517 ~~~~n~~D~~G~TpLH~Aa~~  537 (763)
                        +++.+|.+|+||||+|+..
T Consensus       247 --d~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          247 --DTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             --CTTCCCTTSCCGGGGSCTT
T ss_pred             --CCCCcCCCCCCHHHHhcCc
Confidence              6999999999999999944

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.6e-40  Score=358.98  Aligned_cols=268  Identities=15%  Similarity=0.116  Sum_probs=225.4

Q ss_pred             CCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccC
Q 004286           33 DDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIG  112 (763)
Q Consensus        33 ~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~  112 (763)
                      .++.+.+..|.+|+||||+||..|+.++|++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~   80 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG------VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-HS   80 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-CC
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-cc
Confidence            346777788999999999999999999999999988      67899999999999999999999999999999985 43


Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHc----CCCCCC------------CCccccCCCCChHHHHHHHcC--ChHHHHH
Q 004286          113 ERNHENETPFFLAARHGHKDAFLCLHYL----CASVDD------------GYNYSRRKNGETILHYAISGY--YFVDLAF  174 (763)
Q Consensus       113 ~~~~~g~TpLh~A~~~g~~~~v~~Ll~~----ga~~~~------------~~~~~~d~~G~TpLh~A~~~g--~~~~iv~  174 (763)
                        +.+|.||||+|+..|+.+++++|+++    |++++.            ...+.+|..|.||||+|+..|  +. ++++
T Consensus        81 --~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~-~~v~  157 (364)
T 3ljn_A           81 --LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL-EMIK  157 (364)
T ss_dssp             --CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH-HHHH
T ss_pred             --ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH-HHHH
Confidence              35799999999999999999999999    766651            011228889999999999999  99 9999


Q ss_pred             HHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHH
Q 004286          175 QIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETC  254 (763)
Q Consensus       175 ~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  254 (763)
                      +|++. |++++..|..|.||||+|+..|+       .+++++|+++|++....+                          
T Consensus       158 ~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~--------------------------  203 (364)
T 3ljn_A          158 ILVQL-GASPTAKDKADETPLMRAMEFRN-------REALDLMMDTVPSKSSLR--------------------------  203 (364)
T ss_dssp             HHHHH-TCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHCSCSSSCC--------------------------
T ss_pred             HHHHc-CCCCcccCCCCCCHHHHHHHcCC-------HHHHHHHHhccccccccc--------------------------
Confidence            99995 99999999999999999999985       689999988887633211                          


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhh
Q 004286          255 LNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLV  334 (763)
Q Consensus       255 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~  334 (763)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (364)
T 3ljn_A          204 --------------------------------------------------------------------------------  203 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCC
Q 004286          335 ILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPD  414 (763)
Q Consensus       335 ~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  414 (763)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (364)
T 3ljn_A          204 --------------------------------------------------------------------------------  203 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchh
Q 004286          415 TSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVM  494 (763)
Q Consensus       415 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~L  494 (763)
                                                        .+..|..|.||||+||..|+.++|++||+ .+.+++.+|.+|+|||
T Consensus       204 ----------------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          204 ----------------------------------LDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             ----------------------------------TTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCCHH
T ss_pred             ----------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHH
Confidence                                              01145579999999999999999999999 5777899999999999


Q ss_pred             HHHHHcCChHHHHHHHhccchhh--------hhhccccCCCCchhhhHhhcCC
Q 004286          495 LLAVENRQRHVYQLLLKTAIIQE--------TVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       495 H~A~~~~~~~iv~~Ll~~~~~~~--------~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      |+|+..|+.+++++|++.++...        ......|..|+|||++|+..|+
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~  301 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS  301 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred             HHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence            99999999999999999986421        0112268889999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-39  Score=338.37  Aligned_cols=261  Identities=17%  Similarity=0.112  Sum_probs=196.4

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC
Q 004286           38 EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE  117 (763)
Q Consensus        38 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  117 (763)
                      ++.+|.+|+||||+||..|+.++|++|++.|++.   ..++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~   77 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERG   77 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence            3567999999999999999999999999998431   23889999999999999999999999999999999 9999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCC--------CccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccccccc
Q 004286          118 NETPFFLAARHGHKDAFLCLHYLCASVDDG--------YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNE  189 (763)
Q Consensus       118 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~--------~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~  189 (763)
                      |.||||+|+..|+.+++++|+++|++....        ........+.++++.++..+.. .....++...+.+++..|.
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-NEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------CCCGGGGTTCCCT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-hhhhhhhhhhhhcCCCcCC
Confidence            999999999999999999999999875411        1123445678899998888777 5555555557889999999


Q ss_pred             CCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHH
Q 004286          190 RGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLF  269 (763)
Q Consensus       190 ~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~  269 (763)
                      .|.||||+|+..|+       .+++++|+++|++++..+                                         
T Consensus       157 ~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~-----------------------------------------  188 (282)
T 1oy3_D          157 DGHTPLHVAVIHKD-------AEMVRLLRDAGADLNKPE-----------------------------------------  188 (282)
T ss_dssp             TSCCHHHHHHHTTC-------HHHHHHHHHHTCCTTCCC-----------------------------------------
T ss_pred             CCcCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCC-----------------------------------------
Confidence            99999999999985       699999999888776422                                         


Q ss_pred             hCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHH
Q 004286          270 NRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDE  349 (763)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~  349 (763)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (282)
T 1oy3_D          189 --------------------------------------------------------------------------------  188 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccc
Q 004286          350 KQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKL  429 (763)
Q Consensus       350 ~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~  429 (763)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (282)
T 1oy3_D          189 --------------------------------------------------------------------------------  188 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHH
Q 004286          430 SRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLL  509 (763)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~L  509 (763)
                                             +..|.||||+|+..|+.++|++||+. +.+++.+|..|+||||+|+.+|+.+++++|
T Consensus       189 -----------------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~L  244 (282)
T 1oy3_D          189 -----------------------PTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLL  244 (282)
T ss_dssp             -----------------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             -----------------------CCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcCCcHHHHHH
Confidence                                   12499999999999999999999994 778899999999999999999999999999


Q ss_pred             HhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          510 LKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       510 l~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      +++|+    +++.+|.+|.|||++|....+
T Consensus       245 l~~ga----~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          245 RAHGA----PEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHTTC----CCCCCC---------------
T ss_pred             HHcCC----CcCcCCCcccccccccCCccc
Confidence            99998    699999999999999998765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-39  Score=331.10  Aligned_cols=169  Identities=24%  Similarity=0.232  Sum_probs=123.8

Q ss_pred             cccccCCCCChHHHHHHHcC-------------CHHHHHHHHHHhhhhcccccc-ccCCCCCchHHHHHHHcCCHHHHHH
Q 004286           37 HEARITRSGGTALHIAVSDG-------------QEEIVEDLVRIIHEKQQLKVL-KIGDERGSTPLHIAAGLGNVSMCKC  102 (763)
Q Consensus        37 ~~~~~d~~g~TpLh~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~-~~~d~~g~TpLh~Aa~~g~~~~v~~  102 (763)
                      ++|.+|.+|+||||+|+..|             +.+++++|++.|+      ++ +..|..|+||||+|+..|+.+++++
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~   75 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA------SLHNQTDRTGETALHLAARYSRSDAAKR   75 (253)
T ss_dssp             --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccC------CcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence            57788999999999999987             8999999999984      34 3468999999999999999999999


Q ss_pred             HHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcc
Q 004286          103 IATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA-SVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE  181 (763)
Q Consensus       103 Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~  181 (763)
                      |+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++     .+|..|.||||+|+..|+. +++++|++ .|
T Consensus        76 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~g  147 (253)
T 1yyh_A           76 LLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVE-GMLEDLIN-SH  147 (253)
T ss_dssp             HHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT-----CCCTTCCCHHHHHHHHTCS-SHHHHHHH-TT
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-----ccCCCCCcHHHHHHHcChH-HHHHHHHH-cC
Confidence            9999998 99999999999999999999999999999987 777     8999999999999999999 99999999 59


Q ss_pred             ccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          182 KLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       182 ~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ++++.+|.+|.||||+|+..++       .+++++|+++|++++.
T Consensus       148 ~~~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          148 ADVNAVDDLGKSALHWAAAVNN-------VDAAVVLLKNGANKDM  185 (253)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTC-------HHHHHHHHHTTCCTTC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCC
Confidence            9999999999999999999885       6888888888877763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.6e-38  Score=339.59  Aligned_cols=283  Identities=19%  Similarity=0.154  Sum_probs=242.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE-RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      +.+|.||||.||+.|+.++|++||++|      +++|.+|. .|+||||+|+..|+.++|++|+++|++ ++.++..+.+
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~G------advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~   94 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGAT   94 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCC------CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCc
Confidence            445889999999999999999999998      67888875 599999999999999999999999999 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccccc----------ccC
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFV----------NER  190 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~----------d~~  190 (763)
                      |++.++..++..++..+++.+++++     .+|..|.||||+|+..|+. +++++|++ .|++++..          +..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~g~t~l~~A~~~~~~-~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~  167 (337)
T 4g8k_A           95 PFILAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKV-KALKFLYK-RGANVNLRRKTKEDQERLRKG  167 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTT-----CBCTTCCBHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCCCC-----CTTC
T ss_pred             hhHHHHhcccchhhHHhhhccchhh-----hhccCCCCHHHHHHHcCcH-HHHHHHHH-cCCCcchhhccccccccccCC
Confidence            9999999999999999999999998     8999999999999999999 99999999 48877653          557


Q ss_pred             CCcHHHHHhcCCCCccCCchHHHHHHHHH-cCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHH
Q 004286          191 GVSPLHLLATKPNAFRSGSHLGLCTGIIY-HCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLF  269 (763)
Q Consensus       191 G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~  269 (763)
                      |.||||+|+..|+       .+++++|++ .|++++..+..              +.+|+++.....             
T Consensus       168 g~T~L~~A~~~g~-------~~~v~~LL~~~gad~n~~d~~--------------g~t~l~~~~~~~-------------  213 (337)
T 4g8k_A          168 GATALMDAAEKGH-------VEVLKILLDEMGADVNACDNM--------------GRNALIHALLSS-------------  213 (337)
T ss_dssp             SCCHHHHHHHHTC-------HHHHHHHHHHSCCCTTCCCTT--------------SCCHHHHHHHHS-------------
T ss_pred             CCcHHHHHHHCCC-------HHHHHHHHhccCCCcCccCCC--------------CCcHHHHHHHHc-------------
Confidence            9999999999985       799999996 69999987743              344444432110             


Q ss_pred             hCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHH
Q 004286          270 NRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDE  349 (763)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~  349 (763)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (337)
T 4g8k_A          214 --------------------------------------------------------------------------------  213 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccc
Q 004286          350 KQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKL  429 (763)
Q Consensus       350 ~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~  429 (763)
                        ......++++.|+++|++.                                                           
T Consensus       214 --~~~~~~~i~~lLl~~gad~-----------------------------------------------------------  232 (337)
T 4g8k_A          214 --DDSDVEAITHLLLDHGADV-----------------------------------------------------------  232 (337)
T ss_dssp             --CTTTHHHHHHHHHHTTCCT-----------------------------------------------------------
T ss_pred             --CcccHHHHHHHHHHCCCCC-----------------------------------------------------------
Confidence              0011125788888885432                                                           


Q ss_pred             cccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHH
Q 004286          430 SRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLL  509 (763)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~L  509 (763)
                                          +.+|.+|+||||+|+..|+.++|+.|++..+.+++.+|.+|+||||+||++|+.++|++|
T Consensus       233 --------------------n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          233 --------------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             --------------------TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             --------------------CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                225668999999999999999999999987889999999999999999999999999999


Q ss_pred             HhccchhhhhhccccCCCCchhhhHhhcCCCCC
Q 004286          510 LKTAIIQETVFRKVDDQGNSALHLAATLGDHKP  542 (763)
Q Consensus       510 l~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~  542 (763)
                      +++|+         |.++.||||+|++.|+.++
T Consensus       293 l~~GA---------d~n~~~~L~~A~~~~~~~i  316 (337)
T 4g8k_A          293 CKRGA---------STDCGDLVMTARRNYDHSL  316 (337)
T ss_dssp             HTTSC---------SSTTCCHHHHHHHTTCHHH
T ss_pred             HHCCC---------CCCCCCHHHHHHHcCCHHH
Confidence            99997         3445679999999998443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-38  Score=325.70  Aligned_cols=224  Identities=20%  Similarity=0.153  Sum_probs=170.6

Q ss_pred             ccccCCCCCchHHHHHHHcC-------------CHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 004286           76 VLKIGDERGSTPLHIAAGLG-------------NVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA  142 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  142 (763)
                      ++|.+|.+|+||||+|+..|             +.++++.|++.|++..+..|..|+||||+|+..|+.+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            57889999999999999987             89999999999999556679999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCC
Q 004286          143 SVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCI  222 (763)
Q Consensus       143 ~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga  222 (763)
                      +++     .+|..|+||||+|+..|+. +++++|++..+.+++..|..|.||||+|+..++       .+++++|+++|+
T Consensus        82 ~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~  148 (253)
T 1yyh_A           82 DAN-----IQDNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLINSHA  148 (253)
T ss_dssp             CTT-----CCCTTSCCHHHHHHHHTCH-HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHHHHTTC
T ss_pred             CCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh-------HHHHHHHHHcCC
Confidence            998     8999999999999999999 999999996555999999999999999999986       488888888877


Q ss_pred             CCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 004286          223 SVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEES  302 (763)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (763)
                      +++..                                                                           
T Consensus       149 ~~~~~---------------------------------------------------------------------------  153 (253)
T 1yyh_A          149 DVNAV---------------------------------------------------------------------------  153 (253)
T ss_dssp             CTTCB---------------------------------------------------------------------------
T ss_pred             CCCCc---------------------------------------------------------------------------
Confidence            66532                                                                           


Q ss_pred             ccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCC
Q 004286          303 RHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRR  382 (763)
Q Consensus       303 ~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~  382 (763)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (253)
T 1yyh_A          154 --------------------------------------------------------------------------------  153 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHH
Q 004286          383 PSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILI  462 (763)
Q Consensus       383 a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~  462 (763)
                                                                                            |..|.||||+
T Consensus       154 ----------------------------------------------------------------------d~~g~t~L~~  163 (253)
T 1yyh_A          154 ----------------------------------------------------------------------DDLGKSALHW  163 (253)
T ss_dssp             ----------------------------------------------------------------------CTTSCBHHHH
T ss_pred             ----------------------------------------------------------------------CCCCCCHHHH
Confidence                                                                                  3369999999


Q ss_pred             HHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCCC
Q 004286          463 AAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKP  542 (763)
Q Consensus       463 Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~  542 (763)
                      |+..|+.++|++|++ .+.+++.+|..|+||||+|+.+|+.+++++|++.++    +++.+|..|+||||+|++.|+.++
T Consensus       164 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          164 AAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC----CccccccCCCCHHHHHHHcCCHHH
Confidence            999999999999999 577788999999999999999999999999999998    689999999999999999999443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.4e-38  Score=320.80  Aligned_cols=175  Identities=24%  Similarity=0.254  Sum_probs=151.1

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004286           39 ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN  118 (763)
Q Consensus        39 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  118 (763)
                      +.+|.+|+||||+||..|+.+++++|++...+  .+.+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence            46789999999999999999999999984321  2367899999999999999999999999999999998 89999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccc-cCCCcHHHH
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVN-ERGVSPLHL  197 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d-~~G~TpLh~  197 (763)
                      .||||+|+..|+.+++++|+++++... .+++..|..|.||||+|+..|+. +++++|++ .|++++..+ ..|.||||+
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~-~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGT-LDLEARNYDGLTALHVAVNTECQ-ETVQLLLE-RGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTS-CCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHH-TTCCTTCCCTTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccccCcCCCcHHHHHHHcCCH-HHHHHHHH-cCCCcccccccCCCcHHHH
Confidence            999999999999999999999998322 22338899999999999999999 99999999 488999988 889999999


Q ss_pred             HhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          198 LATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       198 A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      |+..++       .+++++|+++|++++.
T Consensus       157 A~~~~~-------~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A          157 AVENNS-------LSMVQLLLQHGANVNA  178 (241)
T ss_dssp             HHHTTC-------HHHHHHHHHTTCCTTC
T ss_pred             HHHcCC-------HHHHHHHHHcCCCCCC
Confidence            999985       6888888888877763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-39  Score=347.11  Aligned_cols=196  Identities=17%  Similarity=0.128  Sum_probs=164.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccC-CCCChHHHHHHHcCCHHHHHHHHHHhhhh--ccccccccCCCCCch
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARIT-RSGGTALHIAVSDGQEEIVEDLVRIIHEK--QQLKVLKIGDERGST   86 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~~~d~~g~T   86 (763)
                      ..++||.||..+. +.+ .+|..   .+++..| ..|+||||+||..|+.+++++|+......  ..++++|.+|..|+|
T Consensus        94 g~t~L~~Aa~~~~-~~~-~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~T  168 (373)
T 2fo1_E           94 SPIKLHTEAAGSY-AIT-EPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT  168 (373)
T ss_dssp             CCCHHHHHHHSSS-CCC-SCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC
T ss_pred             CccHHHHHhcCCc-hHH-HHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence            3678999998554 433 33332   4667777 79999999999999999888887321100  122789999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCccccCCCCChHHHHH
Q 004286           87 PLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC---ASVDDGYNYSRRKNGETILHYA  163 (763)
Q Consensus        87 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---a~~~~~~~~~~d~~G~TpLh~A  163 (763)
                      |||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+..|+.+++++|++++   ++++     ..|..|.||||+|
T Consensus       169 pL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~d~~g~t~L~~A  242 (373)
T 2fo1_E          169 PLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELDRNGMTALMIV  242 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-----CCCTTSCCHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-----hcCCCCCCHHHHH
Confidence            99999999999999999999999 9999999999999999999999999999998   7887     8999999999999


Q ss_pred             HHcC---ChHHHHHHHHHhccccccc--------cccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC-CCCC
Q 004286          164 ISGY---YFVDLAFQIIHLYEKLVNF--------VNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC-ISVD  225 (763)
Q Consensus       164 ~~~g---~~~~iv~~LL~~~~~~~~~--------~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g-a~~~  225 (763)
                      +..+   +. +++++|++. |++++.        .|..|.||||+|+..|+       .+++++|+++| ++++
T Consensus       243 ~~~~~~~~~-~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          243 AHNEGRDQV-ASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------MPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             HHSCSTTHH-HHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HHHHHHHHHHSCCCTT
T ss_pred             HHhCCcchH-HHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCC-------HHHHHHHHHhcCCCcc
Confidence            9998   78 999999995 888876        67799999999999985       68888888765 5554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.8e-38  Score=315.96  Aligned_cols=136  Identities=23%  Similarity=0.339  Sum_probs=100.2

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCC
Q 004286           76 VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKN  155 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~  155 (763)
                      +++.+|.+|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++     .+|..
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~   76 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-----PKDAE   76 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-----CCCTT
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-----CCCCC
Confidence            4666777777777777777777777777777776 77777777777777777777777777777777776     67777


Q ss_pred             CChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          156 GETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       156 G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |.||||+|+..|+. +++++|++..+.+++..|..|.||||+|+..++       .+++++|+++|++++
T Consensus        77 g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~  138 (237)
T 3b7b_A           77 GSTCLHLAAKKGHY-EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKLLLSKGSDIN  138 (237)
T ss_dssp             SCCHHHHHHHTTCH-HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCTT
T ss_pred             CCcHHHHHHHcCCH-HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCC
Confidence            77777777777777 777777775446777777777777777777764       566666666665554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-38  Score=341.93  Aligned_cols=193  Identities=19%  Similarity=0.157  Sum_probs=177.5

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      ...++||.||..|+.+.|+.||..  +++++..|..|+||||+||..|+.++|++|+++|+        +..+.+|.|||
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~g~t~L   88 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE--------VHSLWHGQKPI   88 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--------CCCCBTTBCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------CccccCCCCHH
Confidence            357899999999999999999988  89999999999999999999999999999999983        33345899999


Q ss_pred             HHHHHcCCHHHHHHHHhc----CCCccCC-----------------CCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCC
Q 004286           89 HIAAGLGNVSMCKCIATA----DPRLIGE-----------------RNHENETPFFLAARHG--HKDAFLCLHYLCASVD  145 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~----~~~~~~~-----------------~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga~~~  145 (763)
                      |+|+..|+.+++++|+++    +.+ ++.                 +|..|.||||+|+..|  +.+++++|+++|++++
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            999999999999999998    766 555                 8889999999999999  9999999999999999


Q ss_pred             CCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc-----ccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHc
Q 004286          146 DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL-----VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYH  220 (763)
Q Consensus       146 ~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~-----~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~  220 (763)
                           .+|..|.||||+|+..|+. +++++|++. +++     ++..|..|.||||+|+..|+       .+++++|+++
T Consensus       168 -----~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~  233 (364)
T 3ljn_A          168 -----AKDKADETPLMRAMEFRNR-EALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINW-------EDVAMRFVEM  233 (364)
T ss_dssp             -----CCCTTSCCHHHHHHHTTCH-HHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTC-------HHHHHHHHTT
T ss_pred             -----ccCCCCCCHHHHHHHcCCH-HHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCC-------HHHHHHHHHc
Confidence                 8999999999999999999 999999995 777     99999999999999999985       6999999998


Q ss_pred             CCCCCc
Q 004286          221 CISVDK  226 (763)
Q Consensus       221 ga~~~~  226 (763)
                      |++++.
T Consensus       234 gad~~~  239 (364)
T 3ljn_A          234 GIDVNM  239 (364)
T ss_dssp             TCCTTC
T ss_pred             CCCCCC
Confidence            888764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-37  Score=314.34  Aligned_cols=170  Identities=19%  Similarity=0.182  Sum_probs=158.2

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC
Q 004286           36 IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN  115 (763)
Q Consensus        36 ~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  115 (763)
                      .+++..|.+|+||||+||..|+.+++++|+++|      ++++..|..|.||||+|+..|+.+++++|+++|++ ++.++
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~   74 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKD   74 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC------CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCC
Confidence            456778999999999999999999999999998      67889999999999999999999999999999998 89999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcH
Q 004286          116 HENETPFFLAARHGHKDAFLCLHYLC-ASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSP  194 (763)
Q Consensus       116 ~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~Tp  194 (763)
                      ..|.||||+|+..|+.+++++|+++| .+++     ..|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~-~~~~~Ll~-~g~~~~~~~~~g~t~  147 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN-----CQDDGGWTPMIWATEYKHV-DLVKLLLS-KGSDINIRDNEENIC  147 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcc-----cCCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCCCccCCCCCCH
Confidence            99999999999999999999999998 7777     8999999999999999999 99999999 599999999999999


Q ss_pred             HHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          195 LHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       195 Lh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ||+|+..++       .+++++|+++|++++.
T Consensus       148 L~~A~~~~~-------~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A          148 LHWAAFSGC-------VDIAEILLAAKCDLHA  172 (237)
T ss_dssp             HHHHHHHCC-------HHHHHHHHTTTCCTTC
T ss_pred             HHHHHHCCC-------HHHHHHHHHcCCCCCC
Confidence            999999985       6888888888776653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.9e-38  Score=329.12  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             CCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchh
Q 004286          452 DTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSAL  531 (763)
Q Consensus       452 ~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpL  531 (763)
                      .+..|.||||+||..|+.++|++|++ .+.+++.+|.+|+||||+|+.+|+.+++++|++.++    +++.+|..|+|||
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l  269 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAF  269 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHH
Confidence            35579999999999999999999998 567789999999999999999999999999999998    6899999999999


Q ss_pred             hhHhhc
Q 004286          532 HLAATL  537 (763)
Q Consensus       532 H~Aa~~  537 (763)
                      |+|++.
T Consensus       270 ~~A~~~  275 (299)
T 1s70_B          270 DVADED  275 (299)
T ss_dssp             TSCCSG
T ss_pred             HHHHHH
Confidence            999753

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=324.00  Aligned_cols=172  Identities=19%  Similarity=0.190  Sum_probs=126.0

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhc--cccccccCCCCCchHHHHHHHcCCH-HHHHHHHhcCCCccCCCCC
Q 004286           40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQ--QLKVLKIGDERGSTPLHIAAGLGNV-SMCKCIATADPRLIGERNH  116 (763)
Q Consensus        40 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~~~d~~g~TpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~~  116 (763)
                      .+|..+.|||+.||..|+.++|++||+.|++..  ....++..|..|.||||+|+..++. .+++.|++.|++ +|.+|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCC
Confidence            457788999999999999999999999886532  2234677888999999999988875 488999999999 999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHH
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLH  196 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh  196 (763)
                      +|+||||+|+..|+.+++++|++.|++++     .++.+|.||+|+|+..++. +++++|++ .|++++.+|..|.||||
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-----~~~~~g~t~l~~a~~~~~~-~~~~~Ll~-~g~~~n~~d~~g~TpL~  157 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAG-----ARNADQAVPLHLACQQGHF-QVVKCLLD-SNAKPNKKDLSGNTPLI  157 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHTCH-HHHHHHHH-TTCCSCCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcC-----ccCCCCCCccccccccChH-HHHHHHHH-CCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999998     8999999999999999999 99999999 59999999999999999


Q ss_pred             HHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          197 LLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       197 ~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +|+..|+       .+++++|+++|+++|.
T Consensus       158 ~A~~~g~-------~~~v~~Ll~~gadvn~  180 (269)
T 4b93_B          158 YACSGGH-------HELVALLLQHGASINA  180 (269)
T ss_dssp             HHHHTTC-------GGGHHHHHHTTCCTTC
T ss_pred             HHHHCCC-------HHHHHHHHHCCCCCCc
Confidence            9999986       5889999888887764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.4e-37  Score=308.30  Aligned_cols=165  Identities=18%  Similarity=0.225  Sum_probs=149.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      +..+.||||.|+..|+.+.++.|++.+.     ..++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~   76 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSP   76 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhch-----hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCH
Confidence            3568899999999999999999999863     45778899999999999999999999999999998 89999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcC
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK  201 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~  201 (763)
                      ||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++..|..|.||||+|+..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKGAHVN-----AVNQNGCTPLHYAASKNRH-EIAVMLLE-GGANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCCCcCCCCCcHHHHHHHc
Confidence            999999999999999999999998     8899999999999999999 99999999 4899999999999999999998


Q ss_pred             CCCccCCchHHHHHHHHHcCCCCCc
Q 004286          202 PNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       202 ~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ++       .+++++|+++|++++.
T Consensus       150 ~~-------~~~v~~Ll~~g~~~~~  167 (231)
T 3aji_A          150 GN-------LKMVHILLFYKASTNI  167 (231)
T ss_dssp             TC-------HHHHHHHHHTTCCSCC
T ss_pred             CC-------HHHHHHHHhcCCCccc
Confidence            85       6888888888776653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3e-37  Score=312.76  Aligned_cols=222  Identities=17%  Similarity=0.151  Sum_probs=198.6

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHh----cCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCcccc
Q 004286           77 LKIGDERGSTPLHIAAGLGNVSMCKCIAT----ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSR  152 (763)
Q Consensus        77 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~  152 (763)
                      ++.+|.+|+||||+|+..|+.++++.|++    .+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~   75 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-----AL   75 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----cc
Confidence            45689999999999999999999999997    5666 99999999999999999999999999999999998     89


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHHHhccc----cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccc
Q 004286          153 RKNGETILHYAISGYYFVDLAFQIIHLYEK----LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       153 d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~----~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                      |..|.||||+|+..|+. +++++|++. +.    +++..|..|.||||+|+..++       .+++++|+++|++++..+
T Consensus        76 ~~~g~t~l~~A~~~~~~-~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSP-TCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADIDAVD  146 (241)
T ss_dssp             CTTSCCHHHHHHHTTCH-HHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCCCccccc
Confidence            99999999999999999 999999996 55    889999999999999999885       688888888887766322


Q ss_pred             cccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccccccc
Q 004286          229 EETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGA  308 (763)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (763)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (241)
T 1k1a_A          147 --------------------------------------------------------------------------------  146 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcc
Q 004286          309 QGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVE  388 (763)
Q Consensus       309 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~  388 (763)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (241)
T 1k1a_A          147 --------------------------------------------------------------------------------  146 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcCh
Q 004286          389 EDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGI  468 (763)
Q Consensus       389 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~  468 (763)
                                                                                      +..|.||||+|+..|+
T Consensus       147 ----------------------------------------------------------------~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A          147 ----------------------------------------------------------------IKSGRSPLIHAVENNS  162 (241)
T ss_dssp             ----------------------------------------------------------------TTTCCCHHHHHHHTTC
T ss_pred             ----------------------------------------------------------------ccCCCcHHHHHHHcCC
Confidence                                                                            1359999999999999


Q ss_pred             HHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCCC
Q 004286          469 TEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHKP  542 (763)
Q Consensus       469 ~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~  542 (763)
                      .+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++.++    +++.+|..|+||||+|+..|+.++
T Consensus       163 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          163 LSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             HHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CCCCcCCCCCCHHHHHHhcCcHHH
Confidence            999999999 577789999999999999999999999999999998    689999999999999999887443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.8e-36  Score=301.90  Aligned_cols=161  Identities=20%  Similarity=0.243  Sum_probs=127.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcC--CCccCC-CCCCCChH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATAD--PRLIGE-RNHENETP  121 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~-~~~~g~Tp  121 (763)
                      |+||||+||..|+.++++.|++.|.     ...+.+|..|+||||+|+..|+.+++++|++++  .+ ++. .+..|.||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~   75 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTP   75 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc-----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCH
Confidence            6788888888888888888888874     234457888888888888888888888888888  44 444 77788888


Q ss_pred             HHHHHHcCCHHHHHHHHHcC--CCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHh
Q 004286          122 FFLAARHGHKDAFLCLHYLC--ASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA  199 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~g--a~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~  199 (763)
                      ||+|+..|+.+++++|+++|  ++++     ..|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||||+|+
T Consensus        76 L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           76 FHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQGVTCLHLAVGKKWF-EVSQFLIEN-GASVRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             HHHHHHHCCHHHHHHHHSSSSCCCTT-----CCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccc-----cCCcCCCCHHHHHHHcCCH-hHHHHHHHc-CCCccccCCCCCCHHHHHH
Confidence            88888888888888888888  6666     7788888888888888888 888888884 8888888888888888888


Q ss_pred             cCCCCccCCchHHHHHHHHHcC-CCCC
Q 004286          200 TKPNAFRSGSHLGLCTGIIYHC-ISVD  225 (763)
Q Consensus       200 ~~~~~~~~~~~~~iv~~Ll~~g-a~~~  225 (763)
                      ..++       .+++++|+++| ++++
T Consensus       149 ~~~~-------~~~v~~Ll~~g~~~~~  168 (228)
T 2dzn_A          149 SVGS-------LKLIELLCGLGKSAVN  168 (228)
T ss_dssp             HTTC-------HHHHHHHHTTTCCCSC
T ss_pred             HcCC-------HHHHHHHHhcCccccc
Confidence            8774       57777776665 4443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.2e-36  Score=302.43  Aligned_cols=214  Identities=18%  Similarity=0.167  Sum_probs=193.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccc-cCCCCChHHHH
Q 004286           84 GSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYS-RRKNGETILHY  162 (763)
Q Consensus        84 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~d~~G~TpLh~  162 (763)
                      |+||||+|+..|+.++++.|++.+++..+.+|..|.||||+|+..|+.+++++|+++|++++   ++. .|..|.||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC---GGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc---ccccCCCCCCCHHHH
Confidence            78999999999999999999999998777799999999999999999999999999995544   114 78999999999


Q ss_pred             HHHcCChHHHHHHHHHhcc--ccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhh
Q 004286          163 AISGYYFVDLAFQIIHLYE--KLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTT  240 (763)
Q Consensus       163 A~~~g~~~~iv~~LL~~~~--~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  240 (763)
                      |+..|+. +++++|++. |  ++++..|..|.||||+|+..++       .+++++|+++|++++.              
T Consensus        79 A~~~~~~-~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~--------------  135 (228)
T 2dzn_A           79 ACSVGNL-EVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASVRI--------------  135 (228)
T ss_dssp             HHHHCCH-HHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCSCC--------------
T ss_pred             HHHcCCH-HHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCC-------HhHHHHHHHcCCCccc--------------
Confidence            9999999 999999995 6  8999999999999999999985       6888888888877653              


Q ss_pred             ccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCc
Q 004286          241 IKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGT  320 (763)
Q Consensus       241 ~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~  320 (763)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (228)
T 2dzn_A          136 --------------------------------------------------------------------------------  135 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccC
Q 004286          321 CFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDG  400 (763)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g  400 (763)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (228)
T 2dzn_A          136 --------------------------------------------------------------------------------  135 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCC
Q 004286          401 GDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFP  480 (763)
Q Consensus       401 ~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~  480 (763)
                                                                         +|..|.||||+|+..|+.+++++|++.++
T Consensus       136 ---------------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  164 (228)
T 2dzn_A          136 ---------------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLGK  164 (228)
T ss_dssp             ---------------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             ---------------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence                                                               23469999999999999999999999766


Q ss_pred             ccccccccCCCchhHHHHHcCChHHHHHHH-hccchhhhhhccccCCCCchhhhHhhcC
Q 004286          481 VAILDMNSEKKNVMLLAVENRQRHVYQLLL-KTAIIQETVFRKVDDQGNSALHLAATLG  538 (763)
Q Consensus       481 ~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll-~~~~~~~~~~n~~D~~G~TpLH~Aa~~g  538 (763)
                      .+++.+|.+|+||||+|+..|+.+++++|+ +.++    +++.+|.+|+||||+|++.+
T Consensus       165 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga----~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCBCTTSCBGGGGCSSTT
T ss_pred             ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----CCCccCCCCCcHHHHHHHHH
Confidence            889999999999999999999999999999 7787    68999999999999998654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.3e-36  Score=303.68  Aligned_cols=169  Identities=20%  Similarity=0.165  Sum_probs=152.2

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC
Q 004286           38 EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE  117 (763)
Q Consensus        38 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  117 (763)
                      ++..|..|.||||.|+..|+.+++++|++.|      .+++.+|..|.||||+|+..|+.+++++|++++++.....+..
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAG------YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence            4557889999999999999999999999988      6788999999999999999999999999999999855556666


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHH
Q 004286          118 NETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL  197 (763)
Q Consensus       118 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~  197 (763)
                      |.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .+++++..|..|.||||+
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~-~~~~~Ll~-~~~~~~~~~~~g~t~l~~  148 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPS-----LIDGEGCSCIHLAAQFGHT-SIVAYLIA-KGQDVDMMDQNGMTPLMW  148 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHcCHH-HHHHHHHh-cCCCccccCCCCCcHHHH
Confidence            9999999999999999999999999998     8999999999999999999 99999999 499999999999999999


Q ss_pred             HhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          198 LATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       198 A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |+..+.      ..+++++|++.|++++
T Consensus       149 a~~~~~------~~~~~~~L~~~~~~~~  170 (240)
T 3eu9_A          149 AAYRTH------SVDPTRLLLTFNVSVN  170 (240)
T ss_dssp             HHHHCC------SSTTHHHHHHTTCCTT
T ss_pred             HHHhCC------hHHHHHHHHhcCCCcc
Confidence            997654      2466777777766655

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-37  Score=314.02  Aligned_cols=217  Identities=18%  Similarity=0.191  Sum_probs=170.3

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCc-------cCCCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCCCcc
Q 004286           79 IGDERGSTPLHIAAGLGNVSMCKCIATADPRL-------IGERNHENETPFFLAARHGHK-DAFLCLHYLCASVDDGYNY  150 (763)
Q Consensus        79 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~ga~~~~~~~~  150 (763)
                      .+|..+.+||+.|+..|+.++|++|++.+++.       ++..+..|.||||+|+..++. .++++|++.|+++|     
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-----   80 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-----   80 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-----
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-----
Confidence            46778899999999999999999999988753       466778899999999998876 58899999999999     


Q ss_pred             ccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          151 SRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       151 ~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                      .+|.+|+||||+|+..|+. +++++|++ .+++++..+.+|.||+|+|+..++       .+++++|+++|++++.    
T Consensus        81 ~~d~~G~TpLh~A~~~g~~-~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~g~~~n~----  147 (269)
T 4b93_B           81 VTSQDGSSPLHVAALHGRA-DLIPLLLK-HGANAGARNADQAVPLHLACQQGH-------FQVVKCLLDSNAKPNK----  147 (269)
T ss_dssp             CCCTTSCCHHHHHHHTTCT-THHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCSCC----
T ss_pred             CcCCCCCCHHHHHHHcCcH-HHHHHHHh-cCCCcCccCCCCCCccccccccCh-------HHHHHHHHHCCCCCCC----
Confidence            8999999999999999999 99999999 599999999999999999999885       6888888888877763    


Q ss_pred             cccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCC
Q 004286          231 TSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQG  310 (763)
Q Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (763)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (269)
T 4b93_B          148 --------------------------------------------------------------------------------  147 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccc
Q 004286          311 HQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEED  390 (763)
Q Consensus       311 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~  390 (763)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (269)
T 4b93_B          148 --------------------------------------------------------------------------------  147 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHH
Q 004286          391 ETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITE  470 (763)
Q Consensus       391 ~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~e  470 (763)
                                                                                   +|..|+||||+||..|+.+
T Consensus       148 -------------------------------------------------------------~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B          148 -------------------------------------------------------------KDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             -------------------------------------------------------------CCTTCCCHHHHHHHTTCGG
T ss_pred             -------------------------------------------------------------CCCCCCCHHHHHHHCCCHH
Confidence                                                                         2446999999999999999


Q ss_pred             HHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          471 IVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       471 iv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      +|++||+ .+.+++.+|..|+||||+||.+|+.++|++|++.|+    ++|.+|.+|+||||+|+++++
T Consensus       167 ~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          167 LVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA----SVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHhCCc
Confidence            9999999 577789999999999999999999999999999998    799999999999999998765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-37  Score=328.08  Aligned_cols=181  Identities=8%  Similarity=-0.025  Sum_probs=145.3

Q ss_pred             cCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-----------CCCCCchHH
Q 004286           20 KGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI-----------GDERGSTPL   88 (763)
Q Consensus        20 ~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-----------~d~~g~TpL   88 (763)
                      ....+.+..++.+  |++++..|..|.|++|     |+.++|+.|+++|.+++..+....           +.....+.+
T Consensus        29 ~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           29 TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred             hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence            4445556666666  8999999999999988     999999999999976543222111           111223346


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGE-RNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      |+|+..+..+++++|++.|++ +|. +|..|+||||+||..|+.++|++|+++|++++     .+|.+|+||||+|+..|
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-----~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-----YGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----BCCTTCCCHHHHHHHSS
T ss_pred             HHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHhc
Confidence            889998999999999999998 999 89999999999999999999999999999999     89999999999999999


Q ss_pred             C---hHHHHHHHHHhccccccccccCCCcHHHHHhc----CCCCccCCchHHHHHHHHHcC
Q 004286          168 Y---FVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT----KPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       168 ~---~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~----~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      +   . ++++.|++...++++.+|..|.||||+|+.    .+       +.+++++|++.+
T Consensus       176 ~~~~~-~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g-------~~~~v~~Ll~~~  228 (327)
T 1sw6_A          176 NNYDS-GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG-------CSAAAKYYLDIL  228 (327)
T ss_dssp             HHHHT-TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT-------CHHHHHHHHHHH
T ss_pred             ccccH-HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc-------cHHHHHHHHHHH
Confidence            8   7 889999997668999999999999999998    66       469999998765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.1e-36  Score=300.25  Aligned_cols=195  Identities=25%  Similarity=0.309  Sum_probs=182.6

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++|+.||..|+.+.++.++... ....+..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~   78 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG------VPVNDKDDAGWSPLH   78 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSCCCCTTSCCHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC------CCCCCcCCCCCCHHH
Confidence            467899999999999999999885 3456778999999999999999999999999988      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+.
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-----AKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCcHHHHHHHcCCH
Confidence            99999999999999999998 89999999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          170 VDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                       +++++|++ .|++++.+|..|.||||+|+..++       .+++++|+++|++++.
T Consensus       153 -~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          153 -KMVHILLF-YKASTNIQDTEGNTPLHLACDEER-------VEEAKFLVTQGASIYI  200 (231)
T ss_dssp             -HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCSCC
T ss_pred             -HHHHHHHh-cCCCccccCCCCCCHHHHHHHCCC-------HHHHHHHHHCCCCCCC
Confidence             99999999 599999999999999999999985       6999999988887763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-36  Score=314.18  Aligned_cols=182  Identities=13%  Similarity=0.067  Sum_probs=162.8

Q ss_pred             HHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCH
Q 004286           18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNV   97 (763)
Q Consensus        18 a~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~   97 (763)
                      +...+.+.+.++|.+.   +++.+|..|+||||+|+..|+.+++++|+++|      ++++.+  +|+||||+|+..|+.
T Consensus         7 i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             GGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------GGGSCC--TTCCHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCCCC--CCCCHHHHHHHcCCH
Confidence            4567889999999883   57889999999999999999999999999998      456666  499999999999999


Q ss_pred             HHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCC-ChHHHHHHHcCChHHHHHHH
Q 004286           98 SMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNG-ETILHYAISGYYFVDLAFQI  176 (763)
Q Consensus        98 ~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G-~TpLh~A~~~g~~~~iv~~L  176 (763)
                      +++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..| .||||+|+..|+. +++++|
T Consensus        76 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~g~~t~L~~A~~~~~~-~~v~~L  148 (285)
T 3kea_A           76 KIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDV-SIVSYF  148 (285)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-----GCSSSGGGSHHHHHHHTTCH-HHHHHH
T ss_pred             HHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-----ccCCCCCCCHHHHHHHcCCH-HHHHHH
Confidence            999999999999 99999999999999999999999999999999998     899999 8999999999999 999999


Q ss_pred             HHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          177 IHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       177 L~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ++. ++++... ..|.||||+|+..++       .+++++|+++|++++.
T Consensus       149 l~~-g~~~~~~-~~g~t~L~~A~~~g~-------~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          149 LSE-IPSTFDL-AILLSCIHITIKNGH-------VDMMILLLDYMTSTNT  189 (285)
T ss_dssp             HTT-SCTTCCC-STHHHHHHHHHHTTC-------HHHHHHHHHHHHHTCT
T ss_pred             HhC-CCccccc-cCCccHHHHHHHcCh-------HHHHHHHHHcCCCCCc
Confidence            995 6655222 289999999999985       6888888888776653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9e-35  Score=290.87  Aligned_cols=148  Identities=26%  Similarity=0.338  Sum_probs=72.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      |..|+||||+||..|+.+++++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++++..++.++..|.||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~   95 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEAS------ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP   95 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcH
Confidence            444555555555555555555555444      33444444455555555555555555555544443344444445555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcC
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK  201 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~  201 (763)
                      ||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++. |++++.+|..|.||||+|+..
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNV-DAAVVLLKN-GANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTSCBHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCc-----CcCCCCCcHHHHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCcCHHHHHHHc
Confidence            555555555555555555444444     4444455555555555554 555555442 444444444444444444444


Q ss_pred             C
Q 004286          202 P  202 (763)
Q Consensus       202 ~  202 (763)
                      +
T Consensus       169 ~  169 (223)
T 2f8y_A          169 G  169 (223)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.1e-35  Score=302.67  Aligned_cols=131  Identities=15%  Similarity=0.094  Sum_probs=121.3

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCC
Q 004286           76 VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKN  155 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~  155 (763)
                      +++.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|  |+||||+|+..|+.+++++|+++|++++     .+|..
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~   94 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS-----QFDDK   94 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTT-----CCCTT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CcCCC
Confidence            4889999999999999999999999999999998 78774  9999999999999999999999999998     89999


Q ss_pred             CChHHHHHHHcCChHHHHHHHHHhccccccccccCC-CcHHHHHhcCCCCccCCchHHHHHHHHHcCCC
Q 004286          156 GETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERG-VSPLHLLATKPNAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       156 G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G-~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      |.||||+|+..|+. +++++|++. |++++..|..| .||||+|+..++       .+++++|+++|++
T Consensus        95 g~t~L~~A~~~g~~-~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~-------~~~v~~Ll~~g~~  154 (285)
T 3kea_A           95 GNTALYYAVDSGNM-QTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLND-------VSIVSYFLSEIPS  154 (285)
T ss_dssp             SCCHHHHHHHTTCH-HHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTC-------HHHHHHHHTTSCT
T ss_pred             CCcHHHHHHHcCCH-HHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCc
Confidence            99999999999999 999999995 99999999999 899999999985       5777777776643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-34  Score=286.82  Aligned_cols=194  Identities=17%  Similarity=0.116  Sum_probs=179.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++||.|+..|+.+.++.++..  +++++..|..|+||||+|+..|+.+++++|++++.     .+++.+|..|.||||
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-----TDLDARMHDGTTPLI   97 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT-----SCTTCCCTTCCCHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCcHHH
Confidence            47899999999999999999988  88889999999999999999999999999999873     368889999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+.
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~  171 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-----MQNNREETPLFLAAREGSY  171 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCcCHHHHHHHcCCH
Confidence            99999999999999999998 89999999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          170 VDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       170 ~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                       +++++|++ .|++++.+|..|.||||+|+..++       .+++++|+++|+...
T Consensus       172 -~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~-------~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          172 -ETAKVLLD-HFANRDITDHMDRLPRDIAQERMH-------HDIVRLLDEYNLVRS  218 (223)
T ss_dssp             -HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCSSC
T ss_pred             -HHHHHHHH-cCCCCccccccCCCHHHHHHHhcc-------hHHHHHHHHcCCCcc
Confidence             99999999 499999999999999999999985       699999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.5e-34  Score=295.95  Aligned_cols=209  Identities=18%  Similarity=0.132  Sum_probs=183.7

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCc
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIH---EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGS   85 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~   85 (763)
                      ...+|||.||..|+.+.++.|+..  +.+   ++..|..|+||||+||..|+.+++++|+++|      ++++.+|..|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~   79 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG------AGVLVAERGGH   79 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSSCCCTTSC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCC
Confidence            457899999999999999999987  454   7888999999999999999999999999998      77899999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCC----------------------------------------------ccCCCCCCCC
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPR----------------------------------------------LIGERNHENE  119 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~~~~~g~  119 (763)
                      ||||+|+..|+.+++++|+++++.                                              .++.++..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998754                                              2677888999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC-CCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHH
Q 004286          120 TPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK-NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLL  198 (763)
Q Consensus       120 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~-~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A  198 (763)
                      ||||+|+..|+.+++++|+++|++++     .++. .|+||||+|+..|+. +++++|+++ |++++.+|..|.||||+|
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~-gad~~~~d~~g~tpL~~A  232 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTPLHLAVEAQAA-SVLELLLKA-GADPTARMYGGRTPLGSA  232 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTT-----CCCTTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCcCHHHHHHHcCCH-HHHHHHHHc-CCCCcccccCCCCHHHHH
Confidence            99999999999999999999999998     6775 499999999999999 999999995 999999999999999999


Q ss_pred             hcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHH
Q 004286          199 ATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYET  253 (763)
Q Consensus       199 ~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  253 (763)
                      +..++       .+++++|+++|++++..+..              +.+|++++.
T Consensus       233 ~~~~~-------~~~v~~Ll~~ga~~~~~~~~--------------g~tpl~~a~  266 (282)
T 1oy3_D          233 LLRPN-------PILARLLRAHGAPEPEDGGD--------------KLSPCSSSG  266 (282)
T ss_dssp             HTSSC-------HHHHHHHHHTTCCCCCCC-------------------------
T ss_pred             HHcCC-------cHHHHHHHHcCCCcCcCCCc--------------ccccccccC
Confidence            99985       79999999999999988844              678887764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=282.13  Aligned_cols=194  Identities=21%  Similarity=0.194  Sum_probs=177.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-CCCCCchHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI-GDERGSTPL   88 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~d~~g~TpL   88 (763)
                      ..++|+.|+..|+.+.++.++..  +++++..+..|.||||+|+..|+.+++++|+++|.      +++. .+..|.|||
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~------~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA------IVDQLGGDLNSTPL   80 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCBTTTTBCHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC------cchhhcCCcCCChh
Confidence            46789999999999999999988  78999999999999999999999999999999984      3443 445699999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCC
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYY  168 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~  168 (763)
                      |+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-----ccCCCCCcHHHHHHHhCC
Confidence            999999999999999999998 89999999999999999999999999999999998     899999999999997776


Q ss_pred             -hHHHHHHHHHhcccccccccc-CCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          169 -FVDLAFQIIHLYEKLVNFVNE-RGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       169 -~~~iv~~LL~~~~~~~~~~d~-~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                       . +++++|++ .+++++..+. .|.||||+|+..++       .+++++|+++|++++.
T Consensus       155 ~~-~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          155 SV-DPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGN-------TTVISLLLEAGANVDA  205 (240)
T ss_dssp             SS-TTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTC-------HHHHHHHHHHTCCTTC
T ss_pred             hH-HHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCC-------HHHHHHHHHcCCCCCC
Confidence             6 88999998 5999999997 99999999999985       6899999988887763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-34  Score=297.63  Aligned_cols=154  Identities=17%  Similarity=0.120  Sum_probs=115.8

Q ss_pred             HHHHcCCHHHHHHHHHHhhhhccc---cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHH
Q 004286           51 IAVSDGQEEIVEDLVRIIHEKQQL---KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR  127 (763)
Q Consensus        51 ~A~~~g~~~~v~~Ll~~g~~~~~~---~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~  127 (763)
                      .++..++.+.++.++....+....   ......+..|.||||+|+..|+.++++.|+++|++ ++.+|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            355556666666666554321110   00112234677888888888888888888888887 88888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccC
Q 004286          128 HGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRS  207 (763)
Q Consensus       128 ~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  207 (763)
                      .|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++..|.+|.||||+|+..+     
T Consensus        83 ~g~~~~v~~Ll~~ga~~~-----~~~~~g~tpL~~A~~~g~~-~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~-----  150 (299)
T 1s70_B           83 DDNVDMVKFLVENGANIN-----QPDNEGWIPLHAAASCGYL-DIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEA-----  150 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHCCSHH-----
T ss_pred             cCCHHHHHHHHHCCCCCC-----CCCCCCCcHHHHHHHcCCH-HHHHHHHh-CCCCCCCcCCCCCCHHHHHHhcc-----
Confidence            888888888888888887     7888888888888888888 88888888 48888888888888888888765     


Q ss_pred             CchHHHHHHHHH
Q 004286          208 GSHLGLCTGIIY  219 (763)
Q Consensus       208 ~~~~~iv~~Ll~  219 (763)
                        +.++++.++.
T Consensus       151 --~~~~~~~ll~  160 (299)
T 1s70_B          151 --MEELLQNEVN  160 (299)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --hHHHHHHHHh
Confidence              3566665554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.7e-34  Score=291.68  Aligned_cols=82  Identities=10%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhH
Q 004286          455 KRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLA  534 (763)
Q Consensus       455 ~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~A  534 (763)
                      .|.||||+|+..|+.++|++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++++.  .....++.+|.||.+.+
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~--~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE--NLQMLPESEDEESYDTE  226 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG--GGSSCCCCCTTTCCCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh--hhhcCCccchHHHHhhh
Confidence            47888888888888888888888 4666777888888888888888888888888888873  13456788888888887


Q ss_pred             hhcCC
Q 004286          535 ATLGD  539 (763)
Q Consensus       535 a~~g~  539 (763)
                      .....
T Consensus       227 ~~~~~  231 (236)
T 1ikn_D          227 SEFTE  231 (236)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            76544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-34  Score=292.07  Aligned_cols=176  Identities=22%  Similarity=0.310  Sum_probs=149.8

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004286           39 ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN  118 (763)
Q Consensus        39 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  118 (763)
                      +.+|.+|+||||+|+..|+.+++++|++.+..  .+++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhc--cHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence            35688999999999999999999999998753  2246899999999999999999999999999999998 89999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCC-CCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccccccccc-CCCcHHH
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDD-GYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNE-RGVSPLH  196 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~-~G~TpLh  196 (763)
                      .||||+|+..|+.+++++|+++|++++. ...+..|..|.||||+|+..|+. +++++|++. |++++.++. .|.||||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~~g~tpL~  156 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL-GIVELLVSL-GADVNAQEPCNGRTALH  156 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH-HHHHHHHHH-TCCTTCCCTTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999987431 12347888999999999999999 999999994 999999998 9999999


Q ss_pred             HHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          197 LLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       197 ~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +|+..++       .+++++|+++|++++.
T Consensus       157 ~A~~~~~-------~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          157 LAVDLQN-------PDLVSLLLKCGADVNR  179 (236)
T ss_dssp             HHHHTTC-------HHHHHHHHTTTCCSCC
T ss_pred             HHHHcCC-------HHHHHHHHHcCCCCCc
Confidence            9999985       6888888888877763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1e-32  Score=277.85  Aligned_cols=167  Identities=19%  Similarity=0.152  Sum_probs=145.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHH-hhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcc----CCCCCCC
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRI-IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLI----GERNHEN  118 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~g  118 (763)
                      .|+||||+|+..|+.++++.|++. |      ++++.+|..|+||||+|+..|+.+++++|++++++..    +.+|..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEG------CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTC------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcC------CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCC
Confidence            589999999999999999999997 5      7799999999999999999999999999999998732    6678899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------ccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccC
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGY--------NYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER  190 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~--------~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~  190 (763)
                      .||||+|+..|+.+++++|+++|++++..+        .+..|..|.||||+|+..|+. +++++|++ .|++++.+|.+
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~d~~  153 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE-EIVRLLIE-HGADIRAQDSL  153 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH-HHHHHHHH-TTCCTTCCCTT
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH-HHHHHHHH-CCCCCCCCCCC
Confidence            999999999999999999999999998211        011234899999999999999 99999999 59999999999


Q ss_pred             CCcHHHHHhcCCCCccCCchHHHH----HHHHHcCCCCC
Q 004286          191 GVSPLHLLATKPNAFRSGSHLGLC----TGIIYHCISVD  225 (763)
Q Consensus       191 G~TpLh~A~~~~~~~~~~~~~~iv----~~Ll~~ga~~~  225 (763)
                      |.||||+|+..++       .+++    ++|+++|++++
T Consensus       154 g~t~L~~A~~~~~-------~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          154 GNTVLHILILQPN-------KTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             SCCHHHHHHTCSC-------HHHHHHHHHHHHHTTCSCS
T ss_pred             CCCHHHHHHHcCC-------hHHHHHHHHHHHhcCCchh
Confidence            9999999999985       4555    66666665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.8e-33  Score=263.18  Aligned_cols=159  Identities=25%  Similarity=0.297  Sum_probs=122.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      ++|+.||+.|+.++|+.||++|      +++|.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G------advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG------ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHH
Confidence            4677888888888888888877      66777888888888888888888888888888877 7788888888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCcc
Q 004286          127 RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFR  206 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~  206 (763)
                      ..|+.+++++|+++|++++     .+|.+|+||||+|+..|+. +++++|++ .|++++.+|.+|+||||+|+..++   
T Consensus        79 ~~g~~~~v~~Ll~~gadvn-----~~d~~G~TpLh~A~~~g~~-~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~---  148 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADVN-----AKDSDGRTPLHHAAENGHK-EVVKLLIS-KGADVNTSDSDGRTPLDLAREHGN---  148 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC---
T ss_pred             HcCCHHHHHHHHHCcCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCccccCCCCCCHHHHHHHcCC---
Confidence            8888888888888888777     7788888888888888888 88888887 477888888888888888888774   


Q ss_pred             CCchHHHHHHHHHcCCCCCc
Q 004286          207 SGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       207 ~~~~~~iv~~Ll~~ga~~~~  226 (763)
                          .+++++|+++||+++.
T Consensus       149 ----~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          149 ----EEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             ----HHHHHHHHTC------
T ss_pred             ----HHHHHHHHHCCCCcCC
Confidence                5888888888887764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.8e-32  Score=267.95  Aligned_cols=191  Identities=16%  Similarity=0.143  Sum_probs=178.8

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++||.||..|+.+.++.+|... +.+++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~l~   77 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG------ADINLQNSISDSPYL   77 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHH
Confidence            467999999999999999999874 5588999999999999999999999999999998      778999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCccccCCCCChHHHHHHHcCC
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLC-ASVDDGYNYSRRKNGETILHYAISGYY  168 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~d~~G~TpLh~A~~~g~  168 (763)
                      +|+..|+.+++++|++.+...++.+|..|.||||+|+..|+.+++++|+++| ++++     .+|..|.||||+|+..++
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-----FQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-----CCCTTSCCHHHHHHHSSC
T ss_pred             HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-----CCCCCCCCHHHHHHHhcc
Confidence            9999999999999996666559999999999999999999999999999999 8888     899999999999999998


Q ss_pred             -----hHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC
Q 004286          169 -----FVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       169 -----~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                           . +++++|++ .|++++.+|.+|.||||+|+..++       .+++++|+++|
T Consensus       153 ~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~G  201 (201)
T 3hra_A          153 GNQLYQ-DIVKLLME-NGADQSIKDNSGRTAMDYANQKGY-------TEISKILAQYN  201 (201)
T ss_dssp             CSHHHH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHTCC
T ss_pred             chhhHH-HHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCC-------HhHHHHHHhcC
Confidence                 8 99999999 599999999999999999999985       69999999887

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.1e-32  Score=259.74  Aligned_cols=163  Identities=24%  Similarity=0.299  Sum_probs=151.4

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      .+++++|+.||..|+.+.|+.||+.  |++++.+|..|+||||+|+..|+.+++++|+++|      ++++.+|.+|+||
T Consensus         2 sdlg~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g------ad~~~~d~~g~Tp   73 (169)
T 4gpm_A            2 SELGKRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKG------ADVNAKDSDGRTP   73 (169)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCH
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc------cchhhhccCCCCH
Confidence            3567899999999999999999998  8999999999999999999999999999999998      7799999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      ||+|+..|+.+++++|+++|++ +|.+|.+|+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+|+.+|
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-----~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-----TSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcC
Confidence            9999999999999999999999 99999999999999999999999999999999999     89999999999999999


Q ss_pred             ChHHHHHHHHHhccccccc
Q 004286          168 YFVDLAFQIIHLYEKLVNF  186 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~~~~~  186 (763)
                      +. +++++|++ .|++++.
T Consensus       148 ~~-~iv~~Ll~-~GA~ie~  164 (169)
T 4gpm_A          148 NE-EVVKLLEK-QGGWLEH  164 (169)
T ss_dssp             CH-HHHHHHHT-C------
T ss_pred             CH-HHHHHHHH-CCCCcCC
Confidence            99 99999999 5988764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9.3e-32  Score=264.26  Aligned_cols=147  Identities=17%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      .+.||||.|+..|+.+.++.|++.+.     .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~   77 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTT-----YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYL   77 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            44555555555555555555554431     24445555555555555555555555555555554 4555555555555


Q ss_pred             HHHHcCCHHHHHHHH-HcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          124 LAARHGHKDAFLCLH-YLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      +|+..|+.+++++|+ ..+++++     ..|..|.||||+|+..|+. +++++|++..+++++.+|..|.||||+|+..+
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLN-----KHNRYGGNALIPAAEKGHI-DNVKLLLEDGREDIDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTT-----CCCTTSCCSHHHHHHTTCH-HHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred             HHHHcCCHHHHHHHHhccCcccc-----cccCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Confidence            555555555555555 2333444     4455555555555555555 55555555322455555555555555555443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.5e-33  Score=288.66  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=135.5

Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccc----cCCCCCchHHHHHHHc---CCHHHHHHHHhcC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLK----IGDERGSTPLHIAAGL---GNVSMCKCIATAD  107 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~  107 (763)
                      ++..+..|..|+||||+||..|+.++|+.|++.+.+..  .+++    .+|..|+||||+|+..   |+.+++++|+++|
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK--KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC--CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc--cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            34556689999999999999999999999999876532  3333    4588999999999987   9999999999997


Q ss_pred             CCc------cC----CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC--------------CCChHHHHH
Q 004286          108 PRL------IG----ERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK--------------NGETILHYA  163 (763)
Q Consensus       108 ~~~------~~----~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~--------------~G~TpLh~A  163 (763)
                      ++.      ++    .+|..|.||||+|+..|+.+++++|+++|++++     .++.              .|.||||+|
T Consensus        81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~~~~~~~~~~~~~~g~tpL~~A  155 (273)
T 2pnn_A           81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-----AAANGDFFKKTKGRPGFYFGELPLSLA  155 (273)
T ss_dssp             HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred             ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-----ccccccccccccccccccCCCCHHHHH
Confidence            641      22    267799999999999999999999999999998     6665              799999999


Q ss_pred             HHcCChHHHHHHHHHh--ccccccccccCCCcHHHHHhcCCC
Q 004286          164 ISGYYFVDLAFQIIHL--YEKLVNFVNERGVSPLHLLATKPN  203 (763)
Q Consensus       164 ~~~g~~~~iv~~LL~~--~~~~~~~~d~~G~TpLh~A~~~~~  203 (763)
                      +..|+. +++++|++.  .|++++.+|.+|.||||+|+..++
T Consensus       156 ~~~g~~-~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          156 ACTNQL-AIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HHTTCH-HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHcCCH-HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence            999999 999999994  599999999999999999999764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=5.4e-33  Score=294.89  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=120.7

Q ss_pred             CCHHHHHHHHccCCCccccc-----------------cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-CCC
Q 004286           21 GKWNEVVENYGKDDRIHEAR-----------------ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI-GDE   82 (763)
Q Consensus        21 g~~~~v~~lL~~~~~~~~~~-----------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~d~   82 (763)
                      |+.+.|+.||.+  +++++.                 ......+.+|.|+..+..+++++|++.|      +++|. +|.
T Consensus        58 g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g------~dvn~~~d~  129 (327)
T 1sw6_A           58 EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ------LNLNIPVDE  129 (327)
T ss_dssp             HHHHHHHHHHHH--HHC-------------------------------CHHHHHHHHHHHCTTSC------CCSCSCCST
T ss_pred             chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC------CCcccccCC
Confidence            888888888887  665443                 1112223458888888889999999887      77999 899


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCccccCCCCCh
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH---KDAFLCLHYLC-ASVDDGYNYSRRKNGET  158 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g-a~~~~~~~~~~d~~G~T  158 (763)
                      .|+||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+   .++++.|++.+ ++++     .+|..|+|
T Consensus       130 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~-----~~d~~g~t  203 (327)
T 1sw6_A          130 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-----LEDSMNRT  203 (327)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG-----EECTTCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc-----CCCCCCCC
Confidence            999999999999999999999999999 99999999999999999999   78888898887 6666     89999999


Q ss_pred             HHHHHHH----cCChHHHHHHHHHhcccc
Q 004286          159 ILHYAIS----GYYFVDLAFQIIHLYEKL  183 (763)
Q Consensus       159 pLh~A~~----~g~~~~iv~~LL~~~~~~  183 (763)
                      |||+|+.    .|+. +++++|++. ++.
T Consensus       204 pLh~A~~~~~~~g~~-~~v~~Ll~~-~~~  230 (327)
T 1sw6_A          204 ILHHIIITSGMTGCS-AAAKYYLDI-LMG  230 (327)
T ss_dssp             HHHHHHHHHTSTTCH-HHHHHHHHH-HHH
T ss_pred             HHHHHHHHccccccH-HHHHHHHHH-HHH
Confidence            9999999    8999 999999985 443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.4e-31  Score=273.84  Aligned_cols=198  Identities=20%  Similarity=0.204  Sum_probs=175.1

Q ss_pred             hHHHHHHHHcCCHHHHHHH----HccCCCccccc----cCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhccc-----
Q 004286           11 KKGLFKSAMKGKWNEVVEN----YGKDDRIHEAR----ITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQL-----   74 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~l----L~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~-----   74 (763)
                      .++||.||..|+.+.++.+    +..  +++++.    .|..|+||||+||..   |+.+++++|++.|++.+..     
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            6899999999999855433    334  788887    899999999999999   9999999999999764311     


Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC-------------CChHHHHHHHcCCHHHHHHHHH--
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHE-------------NETPFFLAARHGHKDAFLCLHY--  139 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~TpLh~A~~~g~~~~v~~Ll~--  139 (763)
                      .....+|..|+||||+|+..|+.+++++|+++|++ ++.++..             |.||||+|+..|+.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            11223457899999999999999999999999998 8988886             9999999999999999999999  


Q ss_pred             -cCCCCCCCCccccCCCCChHHHHHHH--cCChHH-------HHHHHHHhccccc-------cccccCCCcHHHHHhcCC
Q 004286          140 -LCASVDDGYNYSRRKNGETILHYAIS--GYYFVD-------LAFQIIHLYEKLV-------NFVNERGVSPLHLLATKP  202 (763)
Q Consensus       140 -~ga~~~~~~~~~~d~~G~TpLh~A~~--~g~~~~-------iv~~LL~~~~~~~-------~~~d~~G~TpLh~A~~~~  202 (763)
                       +|++++     .+|.+|+||||+|+.  .++. +       ++++|++. |+++       +.+|..|.||||+|+..|
T Consensus       160 ~~ga~~n-----~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          160 HQPASLE-----ATDSLGNTVLHALVMIADNSP-ENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             SCCCCTT-----CCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             ccCCCcC-----ccCCCCCCHHHHHHHcccCCc-hhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhC
Confidence             999999     899999999999999  8888 8       99999995 9999       999999999999999999


Q ss_pred             CCccCCchHHHHHHHHHcCCCCC
Q 004286          203 NAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      +       .+++++|+++|++..
T Consensus       233 ~-------~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          233 K-------IEIFRHILQREFSGA  248 (256)
T ss_dssp             C-------HHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHhCCCCCC
Confidence            5       799999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.6e-31  Score=273.46  Aligned_cols=134  Identities=14%  Similarity=0.107  Sum_probs=99.5

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHhcCCCccCC----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCC---
Q 004286           83 RGSTPLHIAAGLGNVS----MCKCIATADPRLIGE----RNHENETPFFLAARH---GHKDAFLCLHYLCASVDDGY---  148 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~TpLh~A~~~---g~~~~v~~Ll~~ga~~~~~~---  148 (763)
                      .|+||||+|+..|+.+    ++++|++.+++ ++.    +|..|+||||+|+..   |+.+++++|+++|++++...   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3667777777777775    45556666776 666    677777777777777   77777777777777665211   


Q ss_pred             ---ccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccC-------------CCcHHHHHhcCCCCccCCchHH
Q 004286          149 ---NYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER-------------GVSPLHLLATKPNAFRSGSHLG  212 (763)
Q Consensus       149 ---~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~-------------G~TpLh~A~~~~~~~~~~~~~~  212 (763)
                         ...+|..|.||||+|+..|+. +++++|++. |++++..|..             |.||||+|+..++       .+
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-------~~  150 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSL-QCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-------WD  150 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-------HH
T ss_pred             ccccccccccCCCHHHHHHHcCCH-HHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCC-------HH
Confidence               112346788888888888888 888888884 8888888776             9999999999985       68


Q ss_pred             HHHHHHH---cCCCCCc
Q 004286          213 LCTGIIY---HCISVDK  226 (763)
Q Consensus       213 iv~~Ll~---~ga~~~~  226 (763)
                      ++++|++   +|++++.
T Consensus       151 ~v~~Ll~~~~~ga~~n~  167 (256)
T 2etb_A          151 VVTYLLENPHQPASLEA  167 (256)
T ss_dssp             HHHHHHHCSSCCCCTTC
T ss_pred             HHHHHHhccccCCCcCc
Confidence            9999988   7777763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.2e-31  Score=275.22  Aligned_cols=204  Identities=19%  Similarity=0.244  Sum_probs=174.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHcc--CCCcccc----ccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcc-----cc
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGK--DDRIHEA----RITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQ-----LK   75 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~--~~~~~~~----~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~-----~~   75 (763)
                      ..++||.||..|+.+.|+.++..  ..+.+++    ..|..|+||||+||..   |+.++|++|+++|++.+.     ..
T Consensus        13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            47899999999999999888863  1144444    3588999999999987   999999999999975321     12


Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCC--------------CCChHHHHHHHcCCHHHHHHHHH--
Q 004286           76 VLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH--------------ENETPFFLAARHGHKDAFLCLHY--  139 (763)
Q Consensus        76 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~TpLh~A~~~g~~~~v~~Ll~--  139 (763)
                      ....+|..|+||||+|+..|+.+++++|+++|++ ++.++.              .|.||||+|+..|+.+++++|++  
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2333678999999999999999999999999998 888887              79999999999999999999999  


Q ss_pred             -cCCCCCCCCccccCCCCChHHHHHHHcCC---------hHHHHHHHHHhcccccc-------ccccCCCcHHHHHhcCC
Q 004286          140 -LCASVDDGYNYSRRKNGETILHYAISGYY---------FVDLAFQIIHLYEKLVN-------FVNERGVSPLHLLATKP  202 (763)
Q Consensus       140 -~ga~~~~~~~~~~d~~G~TpLh~A~~~g~---------~~~iv~~LL~~~~~~~~-------~~d~~G~TpLh~A~~~~  202 (763)
                       +|++++     .+|.+|+||||+|+..|+         . +++++|++. |++++       .+|..|.||||+|+..|
T Consensus       172 ~~gad~~-----~~d~~g~tpLh~A~~~~~~~~~~~~~~~-~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          172 WQPADIS-----ARDSVGNTVLHALVEVADNTVDNTKFVT-SMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             SCCCCTT-----CCCTTSCCHHHHHHHHCCSCHHHHHHHH-HHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             cCCCCce-----eeCCCCCcHHHHHHHccCcchhHHHHHH-HHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhC
Confidence             999998     899999999999999998         7 999999995 88987       48999999999999999


Q ss_pred             CCccCCchHHHHHHHHHcCC-CCCccc
Q 004286          203 NAFRSGSHLGLCTGIIYHCI-SVDKLQ  228 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~ga-~~~~~~  228 (763)
                      +       .+++++|+++|+ |+....
T Consensus       245 ~-------~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          245 K-------IGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             C-------HHHHHHHHHHHTC------
T ss_pred             h-------HHHHHHHHHCCCCCchhhh
Confidence            5       799999999999 665443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.3e-31  Score=272.83  Aligned_cols=199  Identities=20%  Similarity=0.201  Sum_probs=176.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHc----cCCCccccccC----CCCChHHHHHH---HcCCHHHHHHHHHHhhhhcc-----c
Q 004286           11 KKGLFKSAMKGKWNEVVENYG----KDDRIHEARIT----RSGGTALHIAV---SDGQEEIVEDLVRIIHEKQQ-----L   74 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~----~~~~~~~~~~d----~~g~TpLh~A~---~~g~~~~v~~Ll~~g~~~~~-----~   74 (763)
                      +++||.|+..|+.+.++.++.    .  +.+++..+    ..|+||||+|+   ..|+.+++++|++.|++.+.     .
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            689999999999998777666    4  56666544    77999999999   77999999999999976432     1


Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC--------------CCCChHHHHHHHcCCHHHHHHHHH-
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN--------------HENETPFFLAARHGHKDAFLCLHY-  139 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~TpLh~A~~~g~~~~v~~Ll~-  139 (763)
                      .+++..|..|+||||+|+..|+.++|++|+++|++ ++.++              ..|.||||+|+..|+.+++++|++ 
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            34566677999999999999999999999999998 89888              689999999999999999999999 


Q ss_pred             --cCCCCCCCCccccCCCCChHHHHHHHcCC---------hHHHHHHHHHhccccc-------cccccCCCcHHHHHhcC
Q 004286          140 --LCASVDDGYNYSRRKNGETILHYAISGYY---------FVDLAFQIIHLYEKLV-------NFVNERGVSPLHLLATK  201 (763)
Q Consensus       140 --~ga~~~~~~~~~~d~~G~TpLh~A~~~g~---------~~~iv~~LL~~~~~~~-------~~~d~~G~TpLh~A~~~  201 (763)
                        +|++++     .+|..|+||||+|+..++         . +++++|++. |+++       +.+|.+|.||||+|+..
T Consensus       163 ~~~ga~~~-----~~d~~g~TpLh~A~~~~~~~~~~~~~~~-~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          163 GHKQADLR-----RQDSRGNTVLHALVAIADNTRENTKFVT-KMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             SSCCCCTT-----CCCTTSCCHHHHHHHHCCSSHHHHHHHH-HHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             cccCCCCc-----ccCCCCCcHHHHHHHhccCchhHHHHHH-HHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHc
Confidence              999998     899999999999999888         7 999999995 8888       77999999999999999


Q ss_pred             CCCccCCchHHHHHHHHHcCCCCCc
Q 004286          202 PNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       202 ~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      |+       .+++++|+++|.+...
T Consensus       236 g~-------~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          236 GK-------IGIFQHIIRREIADAA  253 (260)
T ss_dssp             TC-------HHHHHHHHHHHHHHHC
T ss_pred             CC-------HHHHHHHHHhCCCccc
Confidence            95       7999999999976653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=8.6e-30  Score=248.36  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=156.2

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCC
Q 004286           37 HEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH  116 (763)
Q Consensus        37 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  116 (763)
                      .++.+|..|+||||+||..|+.+++++|++.|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~   99 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDF   99 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc------cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC
Confidence            45678999999999999999999999999998      67889999999999999999999999999999998 999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHH
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLH  196 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh  196 (763)
                      .|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||||
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGANVN-----DRNLEGETPLIVASKYGRS-EIVKKLLE-LGADISARDLTGLTAEA  172 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSS-----CCCTTCCCHHHHHHHHTCH-HHHHHHHH-TTCCTTCBCTTSCBHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999998     8999999999999999999 99999999 49999999999999999


Q ss_pred             HHhcCCCCccCCchHHHHHHHHHcC
Q 004286          197 LLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       197 ~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      +|+..++       .+++++|+++|
T Consensus       173 ~A~~~~~-------~~~v~~Ll~~~  190 (192)
T 2rfm_A          173 SARIFGR-------QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHTTC-------HHHHHHHHHHH
T ss_pred             HHHHhCc-------HHHHHHHHhcc
Confidence            9999985       79999999865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.6e-30  Score=266.60  Aligned_cols=136  Identities=15%  Similarity=0.070  Sum_probs=103.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHH----HhcCCCccCCCC----CCCChHHHHHH---HcCCHHHHHHHHHcCCCCCC---
Q 004286           81 DERGSTPLHIAAGLGNVSMCKCI----ATADPRLIGERN----HENETPFFLAA---RHGHKDAFLCLHYLCASVDD---  146 (763)
Q Consensus        81 d~~g~TpLh~Aa~~g~~~~v~~L----l~~~~~~~~~~~----~~g~TpLh~A~---~~g~~~~v~~Ll~~ga~~~~---  146 (763)
                      +..|+||||.|++.|+.+.++.|    ++.+++ ++..+    ..|+||||+|+   ..|+.+++++|++.|++.+.   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            45677888888888887744444    447776 56554    56888888888   56888888888887765321   


Q ss_pred             ---CCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccc--------------cCCCcHHHHHhcCCCCccCCc
Q 004286          147 ---GYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVN--------------ERGVSPLHLLATKPNAFRSGS  209 (763)
Q Consensus       147 ---~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d--------------~~G~TpLh~A~~~~~~~~~~~  209 (763)
                         ...+..|..|+||||+|+..|+. +++++|++ .|++++..+              ..|.||||+|+..|+      
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~------  152 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCK-HYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ------  152 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC------
T ss_pred             hhcccccccccCCCCHHHHHHHcCCH-HHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCC------
Confidence               22235566899999999999999 99999998 488999888              689999999999985      


Q ss_pred             hHHHHHHHHH---cCCCCCc
Q 004286          210 HLGLCTGIIY---HCISVDK  226 (763)
Q Consensus       210 ~~~iv~~Ll~---~ga~~~~  226 (763)
                       .+++++|++   +|++++.
T Consensus       153 -~~~v~~Ll~~~~~ga~~~~  171 (260)
T 3jxi_A          153 -PHIVHYLTENGHKQADLRR  171 (260)
T ss_dssp             -HHHHHHHHHCSSCCCCTTC
T ss_pred             -HHHHHHHHhccccCCCCcc
Confidence             689999988   7777663

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=269.53  Aligned_cols=192  Identities=15%  Similarity=0.134  Sum_probs=175.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      .+++|.|+..|+.+.++.++.......++..|.+|+||||+||..|+.+++++|++.|+     .+++.+|..|.||||+
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-----CKVDKQNRAGYSPIML  151 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-----CCTTCCCTTSCCHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CcCCCCCCCCCCHHHH
Confidence            34567888889999888888773334488899999999999999999999999999983     3789999999999999


Q ss_pred             HH-----HcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           91 AA-----GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        91 Aa-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      |+     ..++.++++.|++.|.. .+..+..|+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+|+.
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-----~~d~~G~TpLh~A~~  225 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-----VQDDDGSTALMCACE  225 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----CCCCCCCCHHHHHHH
Confidence            99     67899999999999987 88899999999999999999999999999999999     899999999999999


Q ss_pred             cCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC
Q 004286          166 GYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       166 ~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      .|+. +++++|++..|++++.+|.+|.||||+|+..|+       .+++++|++++
T Consensus       226 ~g~~-~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~-------~~iv~~Ll~~~  273 (276)
T 4hbd_A          226 HGHK-EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ-------SEIASMLYSRM  273 (276)
T ss_dssp             HTCH-HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHC
T ss_pred             CCCH-HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC-------HHHHHHHHhcc
Confidence            9999 999999996699999999999999999999985       69999999865

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=4.7e-29  Score=238.41  Aligned_cols=169  Identities=19%  Similarity=0.133  Sum_probs=152.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      .++||.||..|+.+.++.++... ...++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG------ADPHILAKERESALSL   75 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTCCCHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCchhhcccCCCHHHH
Confidence            46899999999999999999883 3447888999999999999999999999999998      6789999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChH
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. 
T Consensus        76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~-  148 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-----TEADSGYTPMDLAVALGYR-  148 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCH-
T ss_pred             HHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHhCcH-
Confidence            9999999999999999998 99999999999999999999999999999999998     8999999999999999999 


Q ss_pred             HHHHHHHHhccccccccccCCCcH
Q 004286          171 DLAFQIIHLYEKLVNFVNERGVSP  194 (763)
Q Consensus       171 ~iv~~LL~~~~~~~~~~d~~G~Tp  194 (763)
                      +++++|+++ ++++...+..|.||
T Consensus       149 ~~~~~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          149 KVQQVIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHH-HHHHSCC-------
T ss_pred             HHHHHHHHH-HHHHhcccCCCCCC
Confidence            999999994 88999999999887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.5e-29  Score=238.08  Aligned_cols=161  Identities=19%  Similarity=0.192  Sum_probs=150.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      .|.||||+|+..|+.+++++|++.|      .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence            5889999999999999999999987      66889999999999999999999999999999998 8999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCC
Q 004286          124 LAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPN  203 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~  203 (763)
                      +|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||||+|+..++
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGVDVN-----EYDWNGGTPLLYAVHGNHV-KCVKMLLE-SGADPTIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC-----cCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCc
Confidence            9999999999999999999998     8999999999999999999 99999999 599999999999999999999985


Q ss_pred             CccCCchHHHHHHHHHcCCCCC
Q 004286          204 AFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       204 ~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                             .+++++|++++++..
T Consensus       148 -------~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          148 -------RSVQQVIESHLLKLL  162 (167)
T ss_dssp             -------HHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHHHHH
Confidence                   699999999876554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=260.51  Aligned_cols=166  Identities=16%  Similarity=0.203  Sum_probs=151.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      ..+++++|.|+..|+.+.++.+++.+.+    ..+|.+|.+|+||||+|+..|+.+++++|++.|+..++.+|..|.|||
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~----~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLD----YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI  149 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHH----HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHh----hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHH
Confidence            3467889999999999999999998854    458999999999999999999999999999999955999999999999


Q ss_pred             HHHH-----HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHH
Q 004286          123 FLAA-----RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL  197 (763)
Q Consensus       123 h~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~  197 (763)
                      |+|+     ..++.+++++|++.|++.+     ..|..|+||||+|+..|+. +++++|++ .|++++.+|.+|.||||+
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~tpLh~A~~~g~~-~~v~~Ll~-~gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINA-----KASQAGQTALMLAVSHGRV-DVVKALLA-CEADVNVQDDDGSTALMC  222 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTC-----CCTTTCCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcCCH-HHHHHHHh-CCCCCCCCCCCCCCHHHH
Confidence            9999     6789999999999999888     7899999999999999999 99999999 599999999999999999


Q ss_pred             HhcCCCCccCCchHHHHHHHHH-cCCCCCc
Q 004286          198 LATKPNAFRSGSHLGLCTGIIY-HCISVDK  226 (763)
Q Consensus       198 A~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~  226 (763)
                      |+..|+       .+++++|++ .|++++.
T Consensus       223 A~~~g~-------~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          223 ACEHGH-------KEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             HHHHTC-------HHHHHHHHTSTTCCTTC
T ss_pred             HHHCCC-------HHHHHHHHhcCCCCCcC
Confidence            999985       688888887 7776653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.4e-29  Score=236.78  Aligned_cols=158  Identities=17%  Similarity=0.143  Sum_probs=126.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      ...||||.|+..|+.+++++|+++|      .+++.+|..|+||||+|+. |+.+++++|+++|++ ++.+|..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~   75 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIH   75 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC------CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            4568888888888888888888776      5677778888888888887 888888888888877 7888888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc-ccccccCCCcHHHHHhcCC
Q 004286          124 LAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL-VNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~-~~~~d~~G~TpLh~A~~~~  202 (763)
                      +|+..|+.+++++|+++|++++     .+|.+|.||||+|+..|+. +++++|++. |++ ++..|..|.||||+|+..+
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADVN-----IEDNEGNLPLHLAAKEGHL-RVVEFLVKH-TASNVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCCH-HHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcC
Confidence            8888888888888888888877     7788888888888888888 888888885 555 5788888888888888887


Q ss_pred             CCccCCchHHHHHHHHHcCCC
Q 004286          203 NAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      +       .+++++|+++|||
T Consensus       149 ~-------~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          149 R-------NEVVSLMQANGAG  162 (162)
T ss_dssp             C-------HHHHHHHHHTC--
T ss_pred             C-------HHHHHHHHHhCCC
Confidence            4       6888888888875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.3e-28  Score=234.61  Aligned_cols=160  Identities=23%  Similarity=0.213  Sum_probs=145.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        41 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      ....+.||||.||..|+.+++++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   82 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANG------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMT   82 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCC
Confidence            3566789999999999999999999988      67888999999999999999999999999999988 8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||||+|+.
T Consensus        83 ~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           83 PLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHLAAMFGHL-EIVEVLLK-NGADVNAQDKFGKTAFDISID  155 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999988     8899999999999999999 99999999 489999999999999999999


Q ss_pred             CCCCccCCchHHHHHHHHHcC
Q 004286          201 KPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      .++       .+++++|++.|
T Consensus       156 ~~~-------~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGN-------EDLAEILQKLN  169 (169)
T ss_dssp             TTC-------HHHHHHHHTC-
T ss_pred             hCC-------HHHHHHHHHcC
Confidence            985       69999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.2e-30  Score=279.50  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=118.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC----ccCCCCCCC
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPR----LIGERNHEN  118 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~----~~~~~~~~g  118 (763)
                      .+++||||+||..|+.++|++|+++|+..   ...+..|..|.||||+||..|+.++|++|+++|++    .++.++   
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---  163 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---  163 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---
Confidence            34568888888888888888888887421   11223455678888888888888888888888864    133333   


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccc--cCCCCChHHHHHH-HcCChHHHHHHHHHhccccccccccCCCcHH
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYS--RRKNGETILHYAI-SGYYFVDLAFQIIHLYEKLVNFVNERGVSPL  195 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~--~d~~G~TpLh~A~-~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpL  195 (763)
                      .||||+||..|+.++|++|+++|++++     .  .|..|.||||+|+ .+|+. +++++|++ .|+       .|.|||
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-----~~~~d~~g~TpL~~Aa~~~G~~-eiv~~Ll~-~ga-------~~~taL  229 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEA-----TAMIQAENYYAFRWAAVGRGHH-NVINFLLD-CPV-------MLAYAE  229 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHHHHSTTCCH-HHHHHHTT-SHH-------HHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccc-----hhccCCCCCCHHHHHHHHCCCH-HHHHHHHh-CCC-------ccchHH
Confidence            888888888888888888888888766     5  7777888888888 88888 88888888 453       278888


Q ss_pred             HHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          196 HLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       196 h~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      |+|+.+|+       .+++++|+++|++++.
T Consensus       230 ~~Aa~~g~-------~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          230 IHEFEYGE-------KYVNPFIARHVNRLKE  253 (376)
T ss_dssp             HCTTTTTT-------TTHHHHHHHHHHHHHH
T ss_pred             HHHHHCCC-------HHHHHHHHhcCccccc
Confidence            88888885       5788888888876654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=8e-29  Score=236.81  Aligned_cols=164  Identities=19%  Similarity=0.203  Sum_probs=153.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      +.||||.|+..|+.++++.|++.+.     ..++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS-----GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc-----ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHH
Confidence            5789999999999999999999873     34888999999999999999999999999999998 99999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC
Q 004286          125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA  204 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~  204 (763)
                      |+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|.+|.||||+|+..++ 
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~-  147 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDIN-----IYDWNGGTPLLYAVRGNHV-KCVEALLA-RGADLTTEADSGYTPMDLAVALGY-  147 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC-
T ss_pred             HHHCCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCccccCCCCCCHHHHHHHhCc-
Confidence            999999999999999999998     8999999999999999999 99999999 599999999999999999999985 


Q ss_pred             ccCCchHHHHHHHHHcCCCCCccc
Q 004286          205 FRSGSHLGLCTGIIYHCISVDKLQ  228 (763)
Q Consensus       205 ~~~~~~~~iv~~Ll~~ga~~~~~~  228 (763)
                            .+++++|+++|+++...+
T Consensus       148 ------~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          148 ------RKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             ------HHHHHHHHHHHHHHSCC-
T ss_pred             ------HHHHHHHHHHHHHHhccc
Confidence                  799999999999887655

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.2e-28  Score=237.41  Aligned_cols=168  Identities=22%  Similarity=0.257  Sum_probs=154.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      ..+.+|||.||..|+.+++++|++.+.     .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTE-----NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTT-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCc-----ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence            468899999999999999999999852     67899999999999999999999999999999998 999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      |+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||||+|+..+
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYACFWGQD-QVAEDLVA-NGALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCcchhccCCCCcHHHHHHHH
Confidence            99999999999999999999998     8999999999999999999 99999999 59999999999999999999887


Q ss_pred             CCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          203 NAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                             +.+++++|+++|++++..+..
T Consensus       150 -------~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          150 -------RELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             -------HHHHHHHHHHTTCCCSCBCCC
T ss_pred             -------HHHHHHHHHHhhcCcccCCcc
Confidence                   479999999999999976643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.2e-28  Score=230.03  Aligned_cols=159  Identities=20%  Similarity=0.190  Sum_probs=148.1

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      +...++|+.|+..|+.+.++.++..  +.+++..|..|+||||+|+. |+.+++++|+++|      ++++.+|..|+||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g------~~~~~~~~~g~t~   73 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG------ANPDLKDRTGFAV   73 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT------CCTTCCCTTSCCH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcC------CCCCCCCCCCCCH
Confidence            4568999999999999999999987  88899999999999999999 9999999999998      6789999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCCccccCCCCChHHHHHHHc
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCAS-VDDGYNYSRRKNGETILHYAISG  166 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~d~~G~TpLh~A~~~  166 (763)
                      ||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++     .+|..|.||||+|+..
T Consensus        74 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           74 IHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-----HRNHKGDTACDLARLY  147 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-----CCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC-----CcCCCCCcHHHHHHHc
Confidence            9999999999999999999998 999999999999999999999999999999998 46     8999999999999999


Q ss_pred             CChHHHHHHHHHhcccc
Q 004286          167 YYFVDLAFQIIHLYEKL  183 (763)
Q Consensus       167 g~~~~iv~~LL~~~~~~  183 (763)
                      |+. +++++|+++ |++
T Consensus       148 ~~~-~~~~~Ll~~-GAd  162 (162)
T 1ihb_A          148 GRN-EVVSLMQAN-GAG  162 (162)
T ss_dssp             TCH-HHHHHHHHT-C--
T ss_pred             CCH-HHHHHHHHh-CCC
Confidence            999 999999994 764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.1e-28  Score=232.19  Aligned_cols=161  Identities=20%  Similarity=0.177  Sum_probs=141.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        41 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      .|..|.||||.|+..|+.++++.|++.+.     .+++..+..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-----CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCC
Confidence            36678899999999999999999998642     56777888899999999999999999999999988 8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|.+|.||||+|+.
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAAAKGKY-EICKLLLQ-HGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCTGGGSCT
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCC-----CcCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCcccCCCCCChhHhHhc
Confidence            9999999999999999999999988     8899999999999999999 99999998 489999999999999999877


Q ss_pred             CCCCccCCchHHHHHHHHHcCC
Q 004286          201 KPNAFRSGSHLGLCTGIIYHCI  222 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~ga  222 (763)
                       ++       .+++++|+++|+
T Consensus       151 -~~-------~~i~~~L~~~gA  164 (165)
T 3twr_A          151 -GD-------TDIQDLLRGDAA  164 (165)
T ss_dssp             -TC-------HHHHHHHHTC--
T ss_pred             -CC-------hHHHHHHhhccc
Confidence             43       699999998876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=8.9e-28  Score=224.77  Aligned_cols=151  Identities=23%  Similarity=0.235  Sum_probs=131.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      ..||||.|+..|+.+++++|++.|.      +++ .|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~------~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA------PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC------CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC------CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            4588999999999999999999873      343 578889999999999999999999998888 88888899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC
Q 004286          125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA  204 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~  204 (763)
                      |+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++. |++++.+|.+|.||||+|+..|+ 
T Consensus        74 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~-  145 (153)
T 1awc_B           74 AASEGHANIVEVLLKHGADVN-----AKDMLKMTALHWATEHNHQ-EVVELLIKY-GADVHTQSKFCKTAFDISIDNGN-  145 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred             HHHcChHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC-
Confidence            999999999999999998888     7888999999999999998 999999984 88999999999999999999885 


Q ss_pred             ccCCchHHHHHHH
Q 004286          205 FRSGSHLGLCTGI  217 (763)
Q Consensus       205 ~~~~~~~~iv~~L  217 (763)
                            .+++++|
T Consensus       146 ------~~i~~~L  152 (153)
T 1awc_B          146 ------EDLAEIL  152 (153)
T ss_dssp             ------HHHHHHH
T ss_pred             ------HHHHHHh
Confidence                  6888776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=8.5e-30  Score=255.34  Aligned_cols=133  Identities=16%  Similarity=0.017  Sum_probs=78.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChH
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI  159 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~Tp  159 (763)
                      .+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|+||
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-----~~d~~g~tp   90 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTP   90 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCCH
Confidence            344455566666666666666666666555 55566666666666666666666666666666555     555666666


Q ss_pred             HHHHHHcCChHHHHHHHHHhccccccccc-cCCCcHHHHH--hcCCCCccCCchHHHHHHHHHcCCCCCcc
Q 004286          160 LHYAISGYYFVDLAFQIIHLYEKLVNFVN-ERGVSPLHLL--ATKPNAFRSGSHLGLCTGIIYHCISVDKL  227 (763)
Q Consensus       160 Lh~A~~~g~~~~iv~~LL~~~~~~~~~~d-~~G~TpLh~A--~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~  227 (763)
                      ||+|+..|+. +++++|++ .|++++..+ .+|.||||+|  +..+       +.+++++|+++|++++..
T Consensus        91 Lh~A~~~g~~-~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~-------~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           91 LHCAASCNDT-VICMALVQ-HGAAIFATTLSDGATAFEKCDPYREG-------YADCATYLADVEQSMGLM  152 (229)
T ss_dssp             HHHHHHTTCH-HHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTT-------HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHcCCH-HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhcC-------hHHHHHHHHHcCCCcccc
Confidence            6666666666 66666665 355666554 4566666666  4444       345555555555555543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=2.2e-27  Score=226.09  Aligned_cols=154  Identities=29%  Similarity=0.329  Sum_probs=148.3

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++|+.||..|+.+.++.++..  +++++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG------ADVNAVDHAGMTPLR   85 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHH
Confidence            47899999999999999999998  8899999999999999999999999999999988      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+.
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-----AQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHhCCH
Confidence            99999999999999999998 99999999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHHHH
Q 004286          170 VDLAFQIIH  178 (763)
Q Consensus       170 ~~iv~~LL~  178 (763)
                       +++++|++
T Consensus       160 -~~~~~L~~  167 (169)
T 2y1l_E          160 -DLAEILQK  167 (169)
T ss_dssp             -HHHHHHHT
T ss_pred             -HHHHHHHH
Confidence             99999997

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=7.2e-30  Score=273.44  Aligned_cols=168  Identities=14%  Similarity=0.041  Sum_probs=139.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCc---cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRI---HEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~---~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      .+|||.||..|+.+.|+.++..  +.   ..+..+..|.||||+||..|+.++|++|+++|++..   ..+..+.+ +||
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~---~~~i~~~~-~Tp  166 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI---MAMIQAEN-YHA  166 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH---HHHHSHHH-HHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc---ccccCCCC-CCH
Confidence            5999999999999999999887  44   222346678999999999999999999999984210   01222223 999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCC--CCCCCChHHHHHH-HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGE--RNHENETPFFLAA-RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~--~~~~g~TpLh~A~-~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      ||+||..|+.++|++|+++|++ ++.  .|..|.||||+|+ ..|+.++|++|+++|+            .|.||||+|+
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------------~~~taL~~Aa  233 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------------MLAYAEIHEF  233 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------------HHHHHHHCTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------------ccchHHHHHH
Confidence            9999999999999999999998 776  8889999999999 9999999999999764            2789999999


Q ss_pred             HcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCC
Q 004286          165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPN  203 (763)
Q Consensus       165 ~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~  203 (763)
                      .+|+. +++++|++. |++++..+    ++++.|+..|.
T Consensus       234 ~~g~~-evv~lL~~~-ga~~~~~~----~~l~~A~~~g~  266 (376)
T 2aja_A          234 EYGEK-YVNPFIARH-VNRLKEMH----DAFKLSNPDGV  266 (376)
T ss_dssp             TTTTT-THHHHHHHH-HHHHHHHH----TTTTTTSSSSC
T ss_pred             HCCCH-HHHHHHHhc-Cccccccc----HHHHHHHHCCC
Confidence            99999 999999995 88887655    47888888875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.7e-27  Score=221.52  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=143.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++|+.|+..|+.+.++.++..  +.+.+ .|..|+||||+|+..|+.+++++|++.|      ++++.+|..|+||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG------VSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT------CCTTCCCTTCCCHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHH
Confidence            57899999999999999999998  66665 5889999999999999999999999988      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+.
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-----TQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999998 99999999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHH
Q 004286          170 VDLAFQI  176 (763)
Q Consensus       170 ~~iv~~L  176 (763)
                       +++++|
T Consensus       147 -~i~~~L  152 (153)
T 1awc_B          147 -DLAEIL  152 (153)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHh
Confidence             999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.4e-27  Score=224.19  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      |.||||.|+..|+.++++.|++..     ..+++.+|..|+||||+ +..|+.+++++|+++|++ ++.+|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT-----CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhh-----CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence            457777777777777777777762     14567777777777777 777777777777777776 77777777777777


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCC
Q 004286          125 AARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA  204 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~  204 (763)
                      |+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++.  ++++.+|.+|.||||+|+..++ 
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~-  145 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVN-----VPDGTGALPIHLAVQEGHT-AVVSFLAAE--SDLHRRDARGLTPLELALQRGA-  145 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSC-----CCCTTSCCHHHHHHHHTCH-HHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC-
T ss_pred             HHHcCcHHHHHHHHHcCCCCC-----CcCCCCCcHHHHHHHhChH-HHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc-
Confidence            777777777777777777777     6777777777777777777 777777774  6777777777777777777764 


Q ss_pred             ccCCchHHHHHHHHHc
Q 004286          205 FRSGSHLGLCTGIIYH  220 (763)
Q Consensus       205 ~~~~~~~~iv~~Ll~~  220 (763)
                            .+++++|+++
T Consensus       146 ------~~~v~~Ll~~  155 (156)
T 1bd8_A          146 ------QDLVDILQGH  155 (156)
T ss_dssp             ------HHHHHHHHTT
T ss_pred             ------HHHHHHHHhh
Confidence                  5777777653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.1e-27  Score=225.71  Aligned_cols=157  Identities=17%  Similarity=0.119  Sum_probs=149.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      .++||.||..|+.+.++.++..  +.+++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|.||||+
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~   75 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG------ADPQLLGKGRESALSL   75 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCcCCCCCcHHHH
Confidence            5789999999999999999988  7889999999999999999999999999999998      6788999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChH
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                      |+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. 
T Consensus        76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~-  148 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-----IETDSGYNSMDLAVALGYR-  148 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCH-
T ss_pred             HHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCcH-
Confidence            9999999999999999998 99999999999999999999999999999999998     8999999999999999999 


Q ss_pred             HHHHHHHHhcccc
Q 004286          171 DLAFQIIHLYEKL  183 (763)
Q Consensus       171 ~iv~~LL~~~~~~  183 (763)
                      +++++|+++ +.+
T Consensus       149 ~~~~~L~~~-~~~  160 (167)
T 3v31_A          149 SVQQVIESH-LLK  160 (167)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             HHHHHHHHH-HHH
Confidence            999999995 443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.6e-29  Score=251.83  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             HHHHHhcCCCccCC---CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHH
Q 004286          100 CKCIATADPRLIGE---RNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQI  176 (763)
Q Consensus       100 v~~Ll~~~~~~~~~---~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~L  176 (763)
                      ++.|++++++ ++.   .+..|.||||+|+..|+.+++++|+++|++++     .+|..|+||||+|+..|+. +++++|
T Consensus         1 v~~ll~~~~~-~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~d~~g~tpLh~A~~~g~~-~~v~~L   73 (229)
T 2vge_A            1 MRSVLRKAGS-PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-----QPNEEGITALHNAICGANY-SIVDFL   73 (229)
T ss_dssp             ---------C-CCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHH
T ss_pred             CeehhccCCC-CccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-----CCCCCCCCHHHHHHHcCCH-HHHHHH
Confidence            4678888876 443   45567789999999999999999999999998     8999999999999999999 999999


Q ss_pred             HHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          177 IHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       177 L~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ++. |++++.+|..|.||||+|+..|+       .+++++|+++|++++.
T Consensus        74 l~~-ga~~n~~d~~g~tpLh~A~~~g~-------~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           74 ITA-GANVNSPDSHGWTPLHCAASCND-------TVICMALVQHGAAIFA  115 (229)
T ss_dssp             HHT-TCCTTCCCTTCCCHHHHHHHTTC-------HHHHHHHHTTTCCTTC
T ss_pred             HHC-CCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCccc
Confidence            995 99999999999999999999985       6999999988887764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.1e-27  Score=230.62  Aligned_cols=168  Identities=19%  Similarity=0.163  Sum_probs=156.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      +..++|+.|+..|+.+.++.++... +.+++..|..|+||||+||..|+.+++++|+++|      ++++.+|..|+|||
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L   76 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG------ARINVMNRGDDTPL   76 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCCHH
Confidence            4567899999999999999999874 6778889999999999999999999999999998      77899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCC
Q 004286           89 HIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYY  168 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~  168 (763)
                      |+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-----ICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-----BCCTTSCCGGGGSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-----hhccCCCCcHHHHHHHHH
Confidence            999999999999999999998 99999999999999999999999999999999998     899999999999999999


Q ss_pred             hHHHHHHHHHhccccccccccCC
Q 004286          169 FVDLAFQIIHLYEKLVNFVNERG  191 (763)
Q Consensus       169 ~~~iv~~LL~~~~~~~~~~d~~G  191 (763)
                      . +++++|++ .|++++..+..+
T Consensus       151 ~-~~~~~L~~-~g~~~~~~~~~~  171 (179)
T 3f6q_A          151 E-LLRERAEK-MGQNLNRIPYKD  171 (179)
T ss_dssp             H-HHHHHHHH-TTCCCSCBCCCC
T ss_pred             H-HHHHHHHH-hhcCcccCCccc
Confidence            9 99999999 599998877655

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.3e-27  Score=220.18  Aligned_cols=154  Identities=23%  Similarity=0.273  Sum_probs=146.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..++|+.|+..|+.+.++.++.. .+.+++..|..|+||||+ |..|+.+++++|+++|      ++++.+|..|+||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~   73 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG------ASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT------CCTTCCCTTSCCHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHH
Confidence            36899999999999999999988 567889999999999999 9999999999999998      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ ++++     .+|.+|.||||+|+..|+.
T Consensus        74 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-----~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           74 DAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-----RRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-----CCCTTSCCHHHHHHHSCCH
T ss_pred             HHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-----CcCCCCCCHHHHHHHcCcH
Confidence            99999999999999999998 999999999999999999999999999999 8888     8999999999999999999


Q ss_pred             HHHHHHHHHh
Q 004286          170 VDLAFQIIHL  179 (763)
Q Consensus       170 ~~iv~~LL~~  179 (763)
                       +++++|+++
T Consensus       147 -~~v~~Ll~~  155 (156)
T 1bd8_A          147 -DLVDILQGH  155 (156)
T ss_dssp             -HHHHHHHTT
T ss_pred             -HHHHHHHhh
Confidence             999999974

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.3e-27  Score=229.98  Aligned_cols=155  Identities=23%  Similarity=0.180  Sum_probs=148.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..+|||.|+..|+.+.++.++..  +.+++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG------SNVNTKDFSGKTPLM  106 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCcHHH
Confidence            46899999999999999999988  7888999999999999999999999999999998      678999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+.
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-----ARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CcCCCCCCHHHHHHHhCcH
Confidence            99999999999999999998 99999999999999999999999999999999998     8999999999999999999


Q ss_pred             HHHHHHHHHh
Q 004286          170 VDLAFQIIHL  179 (763)
Q Consensus       170 ~~iv~~LL~~  179 (763)
                       +++++|++.
T Consensus       181 -~~v~~Ll~~  189 (192)
T 2rfm_A          181 -EVIKIFTEV  189 (192)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHhc
Confidence             999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=5.2e-27  Score=222.53  Aligned_cols=159  Identities=19%  Similarity=0.183  Sum_probs=147.3

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      .+..++|+.|+..|+.+.++.++... +.+.+..+..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~   78 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG------ADVHAKDKGGLVP   78 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcC------CCCCccCCCCCCH
Confidence            34688999999999999999998864 6777888999999999999999999999999998      6789999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      ||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+. +
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-----KKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCTGGGSCT-T
T ss_pred             HHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-----ccCCCCCChhHhHhc-C
Confidence            9999999999999999999999 99999999999999999999999999999999998     899999999999877 8


Q ss_pred             ChHHHHHHHHHhccc
Q 004286          168 YFVDLAFQIIHLYEK  182 (763)
Q Consensus       168 ~~~~iv~~LL~~~~~  182 (763)
                      +. +++++|+++ |+
T Consensus       152 ~~-~i~~~L~~~-gA  164 (165)
T 3twr_A          152 DT-DIQDLLRGD-AA  164 (165)
T ss_dssp             CH-HHHHHHHTC---
T ss_pred             Ch-HHHHHHhhc-cc
Confidence            99 999999984 53

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.6e-27  Score=238.23  Aligned_cols=166  Identities=13%  Similarity=0.018  Sum_probs=123.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      +..|.||||.|++.|+.+.++.|+++|+      +++. +..|.||||+|+..|+.++++.|++.|++ ++.+|..|.||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~------~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~   73 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGM------RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITA   73 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCC------Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            3569999999999999999999999994      4554 47799999999999999999999999997 99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCC-cHHHHH--
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV-SPLHLL--  198 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~-TpLh~A--  198 (763)
                      ||+|+..|+.+++++|+++|++++     .+|..|+||||+|+..|+. +++++|++ .|++++..+..|. ||||+|  
T Consensus        74 L~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~g~tpL~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCNNV-QVCKFLVE-SGAAVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTT-----CCCTTCCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCH-HHHHHHHH-cCCCcceecCCCCcchHHHHHH
Confidence            999999999999999999999999     8999999999999999999 99999999 5999999998887 999999  


Q ss_pred             hcCCCCccCCchHHHHHHHHHcCCCCCcccc
Q 004286          199 ATKPNAFRSGSHLGLCTGIIYHCISVDKLQE  229 (763)
Q Consensus       199 ~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  229 (763)
                      +..|+       .+++++|+++|++++..+.
T Consensus       147 ~~~g~-------~~~~~~Ll~~~a~~~~~~~  170 (239)
T 1ycs_B          147 MEEGY-------TQCSQFLYGVQEKMGIMNK  170 (239)
T ss_dssp             SSTTC-------CCHHHHHHHHHHHTTTTGG
T ss_pred             hhhcc-------HHHHHHHHHhhhccccccc
Confidence            66664       5999999999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=5.1e-27  Score=237.15  Aligned_cols=177  Identities=12%  Similarity=0.070  Sum_probs=134.3

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ..+||+.|+..|+.+.+..++..  |++++. +..|.||||+|+..|+.+++++|++.|      ++++.+|..|+||||
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~d~~g~t~L~   75 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV------DDPSLPNDEGITALH   75 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTT------SSCCCCCTTSCCHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHH
Confidence            46899999999999999999988  788774 578999999999999999999999988      679999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCC-hHHHHH--HHc
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE-TILHYA--ISG  166 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~-TpLh~A--~~~  166 (763)
                      +|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|. ||||+|  +..
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~~~~t~l~~a~~~~~  149 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-----AMTYSDMQTAADKCEEMEE  149 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCSSSCCCHHHHCCSSST
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----eecCCCCcchHHHHHHhhh
Confidence            99999999999999999999 99999999999999999999999999999999999     7887777 999999  888


Q ss_pred             CChHHHHHHHHHhcccccccc---------ccCCCcHHHHHhcCCC
Q 004286          167 YYFVDLAFQIIHLYEKLVNFV---------NERGVSPLHLLATKPN  203 (763)
Q Consensus       167 g~~~~iv~~LL~~~~~~~~~~---------d~~G~TpLh~A~~~~~  203 (763)
                      |+. +++++|++. +++++..         +..|.+|++++...|.
T Consensus       150 g~~-~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          150 GYT-QCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             TCC-CHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             ccH-HHHHHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999 999999995 8888776         5567888888887773

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=3.3e-26  Score=209.42  Aligned_cols=134  Identities=19%  Similarity=0.128  Sum_probs=127.7

Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      +.+++..|..|+||||+|+..|+.+++++|+++|      ++++.+|..|+||||+|+. |+.+++++|+++|++ ++.+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~   73 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAG------ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCA   73 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcC------CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCc
Confidence            5678889999999999999999999999999988      6789999999999999999 999999999999999 9999


Q ss_pred             CCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc
Q 004286          115 NHE-NETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL  183 (763)
Q Consensus       115 ~~~-g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~  183 (763)
                      |.. |+||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++. +++++|+++ |+|
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~-~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD-----VCDAWGRLPVDLAEEQGHR-DIARYLHAA-TGD  136 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-----CCSSSSSCHHHHHHHHTCH-HHHHHHHHH-HCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCC
Confidence            999 9999999999999999999999999998     8999999999999999999 999999994 754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=2.5e-26  Score=215.69  Aligned_cols=146  Identities=18%  Similarity=0.131  Sum_probs=119.6

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004286           39 ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN  118 (763)
Q Consensus        39 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  118 (763)
                      +..+..|.||||+||..|+.+++++|+++|      ++++.+|..|+||||+|+ .|+.+++++|+++|++ ++.+|..|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g   77 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAG------ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPAT   77 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTT------CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCC
Confidence            345788999999999999999999999988      678999999999999996 9999999999999998 99999999


Q ss_pred             Ch-HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHH
Q 004286          119 ET-PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL  197 (763)
Q Consensus       119 ~T-pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~  197 (763)
                      .| |||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|++ .|++++.+|..|.||.+-
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGARLD-----VRDAWGRLPVDLAEELGHR-DVARYLRA-AAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCSS-----CCCTTCCCHHHHHHHHTCH-HHHHHHSS-CC----------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHhCHH-HHHHHHHH-cCCCCCccCcCcCccccc
Confidence            99 9999999999999999999999999     8999999999999999999 99999999 599999999999999885


Q ss_pred             Hh
Q 004286          198 LA  199 (763)
Q Consensus       198 A~  199 (763)
                      +.
T Consensus       151 ~~  152 (156)
T 1bi7_B          151 PS  152 (156)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=9.3e-27  Score=224.70  Aligned_cols=142  Identities=14%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCC-CCCchHHHHHHHcCCH----HHHHHHHhcCCCccCCCCCCCCh
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGD-ERGSTPLHIAAGLGNV----SMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      .++||.|++.|+.+.++.+++.+        ++.++ ..|+||||+|+..|+.    +++++|+++|++ +|.+|..|+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~--------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~T   77 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKG--------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTT   77 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHS--------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcC--------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            34455555555555554444432        22222 3455555555554442    245555555554 4555555555


Q ss_pred             HHHHHHHcCC------HHHHHHHHHcCCCCCCCCccccCCCCC-hHHHHHHHcCC-----hHHHHHHHHHhccccccccc
Q 004286          121 PFFLAARHGH------KDAFLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYY-----FVDLAFQIIHLYEKLVNFVN  188 (763)
Q Consensus       121 pLh~A~~~g~------~~~v~~Ll~~ga~~~~~~~~~~d~~G~-TpLh~A~~~g~-----~~~iv~~LL~~~~~~~~~~d  188 (763)
                      |||+|+..|+      .+++++|+++|++++     .+|..|+ ||||+|+..+.     . +++++|++..|++++.+|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-----~~d~~g~ttpLh~A~~~~~~~~~~~-~iv~~Ll~~~gad~~~~d  151 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADIT-----ALYKPYKIVVFKNIFNYFVDENEMI-PLYKLIFSQSGLQLLIKD  151 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-----SCBGGGTBCTTGGGGGCCSCHHHHH-HHHHHHHTSTTCCTTCCC
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-----ccCCCcCchHHHHHHHcCCChhhHH-HHHHHHHHhcCCCCcccC
Confidence            5555555444      344555555555554     4555555 55555554222     2 344555542355555555


Q ss_pred             cCCCcHHHHHhcCC
Q 004286          189 ERGVSPLHLLATKP  202 (763)
Q Consensus       189 ~~G~TpLh~A~~~~  202 (763)
                      ..|.||||+|++.+
T Consensus       152 ~~G~TpL~~A~~~~  165 (186)
T 3t8k_A          152 KWGLTALEFVKRCQ  165 (186)
T ss_dssp             TTSCCHHHHHHTTT
T ss_pred             CCCCCHHHHHHHcC
Confidence            55555555555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.9e-26  Score=222.60  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccC-CCCChHHHHHHHcCCH----HHHHHHHHHhhhhccccccccCCCCC
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARIT-RSGGTALHIAVSDGQE----EIVEDLVRIIHEKQQLKVLKIGDERG   84 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~d~~g   84 (763)
                      ..++|+.||..|+.+.++.++..  +.  +..+ ..|+||||+|+..|+.    +++++|+++|      +++|.+|..|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~--~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G------advn~~d~~g   75 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK--GY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKG------ADIKSRTKEG   75 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH--SS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT------CCSSCCCTTC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc--Cc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC------CCCCCCCCCC
Confidence            45689999999999999999877  32  3344 7899999999999985    5999999998      7899999999


Q ss_pred             chHHHHHHHcCC------HHHHHHHHhcCCCccCCCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCccc
Q 004286           85 STPLHIAAGLGN------VSMCKCIATADPRLIGERNHENE-TPFFLAARHG-----HKDAFLCLHY-LCASVDDGYNYS  151 (763)
Q Consensus        85 ~TpLh~Aa~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~~~  151 (763)
                      +||||+|+..|+      .+++++|+++|++ +|.+|..|. ||||+|+..+     +.+++++|++ +|++++     .
T Consensus        76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-----~  149 (186)
T 3t8k_A           76 TTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-----I  149 (186)
T ss_dssp             CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-----C
T ss_pred             CcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-----c
Confidence            999999999997      6889999999999 999999999 9999999954     4569999999 999999     9


Q ss_pred             cCCCCChHHHHHHHcCChHHHHHHHHHhcccccccccc
Q 004286          152 RRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNE  189 (763)
Q Consensus       152 ~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~  189 (763)
                      +|..|.||||+|++.|+. +++++|++ +..+.+.+++
T Consensus       150 ~d~~G~TpL~~A~~~~~~-~~v~~L~~-~~~~~~~~~~  185 (186)
T 3t8k_A          150 KDKWGLTALEFVKRCQKP-IALKMMED-YIKKYNLKEN  185 (186)
T ss_dssp             CCTTSCCHHHHHHTTTCH-HHHHHHHH-HHHHHTCCC-
T ss_pred             cCCCCCCHHHHHHHcCCH-HHHHHHHH-HHHHHhcccC
Confidence            999999999999999999 99999998 4556665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=9.4e-26  Score=206.38  Aligned_cols=133  Identities=13%  Similarity=0.070  Sum_probs=127.8

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK  154 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~  154 (763)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. |+.+++++|+++|++++     .+|.
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-----~~~~   75 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-----CADP   75 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-----CCBT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-----CcCC
Confidence            67899999999999999999999999999999998 99999999999999999 99999999999999998     8999


Q ss_pred             C-CChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCC
Q 004286          155 N-GETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       155 ~-G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      . |.||||+|+..|+. +++++|++ .|++++.+|..|.||||+|+..++       .+++++|+++|+|
T Consensus        76 ~~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           76 ATLTRPVHDAAREGFL-DTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGH-------RDIARYLHAATGD  136 (136)
T ss_dssp             TTTBCHHHHHHHHTCH-HHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTC-------HHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHcCCH-HHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence            9 99999999999999 99999999 599999999999999999999985       7999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=3.4e-24  Score=195.99  Aligned_cols=126  Identities=26%  Similarity=0.252  Sum_probs=119.0

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCh
Q 004286           41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENET  120 (763)
Q Consensus        41 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~T  120 (763)
                      ....|.||||+||..|+.+++++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG------ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCC
Confidence            4567899999999999999999999988      67899999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      |||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..|+. +++++|++.
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~tpl~~A~~~~~~-~~~~~Ll~~  135 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGADVN-----AQDKFGKTAFDISIGNGNE-DLAEILQKL  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc-----CcCCCCCCHHHHHHHCCCH-HHHHHHHHc
Confidence            9999999999999999999999998     8999999999999999999 999999983

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=189.34  Aligned_cols=126  Identities=30%  Similarity=0.453  Sum_probs=120.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      +|+||||+|+..|+.+++++|+++|      .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHH
Confidence            5899999999999999999999998      66888999999999999999999999999999998 8999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc
Q 004286          124 LAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL  183 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~  183 (763)
                      +|+..|+.+++++|+++|++++     .+|..|.||||+|+..|+. +++++|+++ |+|
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHL-EVVKLLLEA-GAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHH-TCC
T ss_pred             HHHHcChHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHcCcH-HHHHHHHHc-CCC
Confidence            9999999999999999999998     8999999999999999999 999999995 764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.8e-23  Score=186.72  Aligned_cols=126  Identities=29%  Similarity=0.416  Sum_probs=121.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHH
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY  162 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~  162 (763)
                      +|+||||+|+..|+.++++.|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-----ccCCCCCcHHHH
Confidence            589999999999999999999999998 89999999999999999999999999999999998     899999999999


Q ss_pred             HHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCC
Q 004286          163 AISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       163 A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      |+..|+. +++++|++ .|++++.+|..|.||||+|+..++       .+++++|+++|+|
T Consensus        75 A~~~~~~-~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHL-EVVKLLLE-AGADVNAKDKNGRTPLHLAARNGH-------LEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHTCC
T ss_pred             HHHcChH-HHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCc-------HHHHHHHHHcCCC
Confidence            9999999 99999999 499999999999999999999985       7999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.7e-23  Score=191.23  Aligned_cols=127  Identities=20%  Similarity=0.149  Sum_probs=119.3

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChH
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI  159 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~Tp  159 (763)
                      ....|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|.||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-----AVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCH
Confidence            456689999999999999999999999998 89999999999999999999999999999999998     899999999


Q ss_pred             HHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC
Q 004286          160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       160 Lh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      ||+|+..|+. +++++|++ .|++++.+|.+|.||||+|+..++       .+++++|+++|
T Consensus        84 L~~A~~~~~~-~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~-------~~~~~~Ll~~G  136 (136)
T 2jab_A           84 LHLAAFIGHL-EIAEVLLK-HGADVNAQDKFGKTAFDISIGNGN-------EDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHC-
T ss_pred             HHHHHHcCCH-HHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcC
Confidence            9999999999 99999999 599999999999999999999985       69999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=3.2e-24  Score=201.19  Aligned_cols=142  Identities=18%  Similarity=0.162  Sum_probs=118.4

Q ss_pred             hhhhhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCch
Q 004286            7 IDQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGST   86 (763)
Q Consensus         7 ~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~T   86 (763)
                      .+...++||.|+..|+.+.++.++..  +++++..|..|+||||+|+ .|+.+++++|+++|      ++++.+|..|+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g------~~~~~~d~~g~t   79 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG------AEPNCADPATLT   79 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT------CCCCCCCTTTCC
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC------CCCCCcCCCCCc
Confidence            34568899999999999999999987  8899999999999999996 99999999999988      779999999999


Q ss_pred             -HHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHH
Q 004286           87 -PLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA  163 (763)
Q Consensus        87 -pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A  163 (763)
                       |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|.||.+.+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~~~~~  151 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGP  151 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-----ccCcCcCcccccC
Confidence             99999999999999999999999 99999999999999999999999999999999999     8999999998754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=3.1e-24  Score=196.46  Aligned_cols=131  Identities=24%  Similarity=0.242  Sum_probs=115.0

Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004286           35 RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        35 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      |+++ .+|..|+||||+|+..|+.+++++|++.|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~   72 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNG------SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTT   72 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCc
Confidence            3455 56889999999999999999999999987      67888999999999999999999999999999998 8999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          115 NHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       115 ~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      |..|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..+.. +++++|.+.
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~tpl~~A~~~~~~-~~l~~l~~~  131 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-----AVNIFGLRPVDYTDDESMK-SLLLLPEKN  131 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCGGGGCCCHHHH-HHHSCC---
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHhhccHH-HHHhhcccc
Confidence            9999999999999999999999999999998     8999999999999988888 888777653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.6e-23  Score=191.78  Aligned_cols=131  Identities=22%  Similarity=0.207  Sum_probs=117.7

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCC
Q 004286           75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRK  154 (763)
Q Consensus        75 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~  154 (763)
                      .|+ .+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|.
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~   74 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-----TTGY   74 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCG
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-----CcCC
Confidence            345 6899999999999999999999999999998 99999999999999999999999999999999998     8999


Q ss_pred             CCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcC
Q 004286          155 NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       155 ~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      .|.||||+|+..|+. +++++|++ .|++++.+|.+|.||||+|+..+       ..+++++|.+.+
T Consensus        75 ~g~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~-------~~~~l~~l~~~~  132 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHV-DIVKLLLS-YGASRNAVNIFGLRPVDYTDDES-------MKSLLLLPEKNE  132 (137)
T ss_dssp             GGCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHH-------HHHHHSCC----
T ss_pred             CCCCHHHHHHHcCCH-HHHHHHHH-cCCCCCCCCCCCCCHHHHHhhcc-------HHHHHhhccccc
Confidence            999999999999999 99999999 59999999999999999999876       357776665544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=2.6e-23  Score=200.62  Aligned_cols=141  Identities=19%  Similarity=0.168  Sum_probs=128.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC-CCCCh
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN-HENET  120 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~T  120 (763)
                      +..|+||||+||..|+.++++.|++ |      .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.++ ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCC
Confidence            5689999999999999999999999 6      67899999999999999999999999999999998 88888 89999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..++.                   ..+.+||++|+.
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~  168 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILKT-------------------TPKGNPMQFGRR  168 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTT-----CCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCc-----CCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHH
Confidence            9999999999999999999999998     8999999999999875543                   346899999999


Q ss_pred             CCCCccCCchHHHHHHHHHcC
Q 004286          201 KPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      .|       +.+++++|.++.
T Consensus       169 ~~-------~~~i~~~L~~~~  182 (183)
T 3deo_A          169 IG-------LEKVINVLEGQV  182 (183)
T ss_dssp             HH-------HHHHHHHHHTCC
T ss_pred             cC-------HHHHHHHHHHhh
Confidence            87       469999997653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.8e-23  Score=211.65  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=131.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC-CCCCh
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN-HENET  120 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~T  120 (763)
                      +..|+||||+||..|+.++++.|++ |      ++++.+|..|+||||+|+..|+.++|++|+++|++ ++.++ ..|+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-T------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-C------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCC
Confidence            4579999999999999999999999 6      67899999999999999999999999999999999 88888 78999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          121 PFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       121 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++                   +..+.||||+|+.
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~g~t~l~~A~~~~~-------------------~~~~~~~l~~a~~  169 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILK-------------------TTPKGNPMQFGRR  169 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHHT-------------------TCCCSSHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCcHHHHHHHHHh-------------------ccCCCCHHHHHHH
Confidence            9999999999999999999999998     899999999999986433                   2468999999999


Q ss_pred             CCCCccCCchHHHHHHHHHcCCCCC
Q 004286          201 KPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       201 ~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      .|       +.+++++|++++.+..
T Consensus       170 ~g-------~~~iv~~L~~~~~~~~  187 (244)
T 3ui2_A          170 IG-------LEKVINVLEGQVFEYA  187 (244)
T ss_dssp             HH-------HHHHHHHHHHHHEEEE
T ss_pred             cC-------hHHHHHHHHHhccccc
Confidence            88       5799999999766543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=210.01  Aligned_cols=139  Identities=16%  Similarity=0.067  Sum_probs=122.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhcccccccc------CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCccCCCC
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI------GDERGSTPLHIAAGL---GNVSMCKCIATADPRLIGERN  115 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~  115 (763)
                      +.++||.|+..|+.+.++.|++.|      ++++.      .|..|+||||+|+..   |+.+++++|+++|++ ++.+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g------~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d  223 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG------QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKA  223 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC------CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCC
Confidence            457799999999999999999988      44555      689999999999997   899999999999998 99999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHH
Q 004286          116 HENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPL  195 (763)
Q Consensus       116 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpL  195 (763)
                      ..|+||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..|+. +++++|++. +++      .|.|||
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-----~~d~~G~TpL~~A~~~~~~-~iv~~Ll~~-ga~------~g~tpL  290 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRALVG-----TVNEAGETALDIARKKHHK-ECEELLEQA-QAG------TFAFPL  290 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-----CCCTTSCCHHHHHHHHTCH-HHHHHHHHH-HHH------TTSSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCCH-HHHHHHHHh-cCC------CCCChh
Confidence            999999999999999999999999999999     8999999999999999999 999999995 654      689999


Q ss_pred             HHHhcCCC
Q 004286          196 HLLATKPN  203 (763)
Q Consensus       196 h~A~~~~~  203 (763)
                      |+|+..|.
T Consensus       291 h~A~~~g~  298 (301)
T 2b0o_E          291 HVDYSWVI  298 (301)
T ss_dssp             C-------
T ss_pred             HHHHhcCC
Confidence            99999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=6e-23  Score=184.06  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      +..|.||||+|+..|+.+++++|++.|      .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC------CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCH
Confidence            456778888888888888888888876      55777788888888888888888888888888877 77888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      ||+|+..|+.+++++|+++|++++     .+|.+|.||||+|..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKT-----VKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHhCC
Confidence            888888888888888888888777     778888888888743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=2.3e-23  Score=207.76  Aligned_cols=139  Identities=19%  Similarity=0.128  Sum_probs=116.2

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCccCCCCCCC
Q 004286           40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA-DPRLIGERNHEN  118 (763)
Q Consensus        40 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g  118 (763)
                      ..+..|.||||+||..|+.+++++|++.|      ++++.+|..|+||||+|+..|+.+++++|++. |++ ++.+|..|
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g  140 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNR------VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLG  140 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTS
T ss_pred             ccccccccccccccccCcHHHHHHHHhCC------CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCC
Confidence            34667899999999999999999999988      67899999999999999999999999999999 777 99999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCC
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV  192 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~  192 (763)
                      +||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..++. ++++.|++ .+++.+..|.+|.
T Consensus       141 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~-~~l~~l~~-~~~~~~~~~~~~~  207 (222)
T 3ehr_A          141 DTALHAAAWKGYADIVQLLLAKGARTD-----LRNIEKKLAFDMATNAACA-SLLKKKQG-TDAVRTLSNAEDY  207 (222)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSC-----CCCTTSCCHHHHCCSHHHH-HHHC------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCc-----cccCCCCCHHHHhcchhHH-HHHHHHhc-cchhhhccchhhh
Confidence            999999999999999999999999999     8999999999999999999 99999998 4877777666553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.3e-22  Score=195.64  Aligned_cols=113  Identities=20%  Similarity=0.222  Sum_probs=106.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccC-CCCChH
Q 004286           81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR-KNGETI  159 (763)
Q Consensus        81 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d-~~G~Tp  159 (763)
                      +..|+||||+|+..|+.++++.|++ +++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+| ..|+||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCCH
Confidence            5678999999999999999999999 877 99999999999999999999999999999999998     777 899999


Q ss_pred             HHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       160 Lh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      ||+|+..|+. +++++|+++ |++++.+|.+|.||||+|++.+
T Consensus       114 L~~A~~~~~~-~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          114 LHMAAGYVRP-EVVEALVEL-GADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHHHHHTTCH-HHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHhcCcH-HHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhc
Confidence            9999999999 999999995 9999999999999999999754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.4e-22  Score=203.31  Aligned_cols=141  Identities=20%  Similarity=0.186  Sum_probs=114.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        43 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      ..+.+++.+++..|+.+.+..+...+.         ..+..|.||||+|+..|+.++++.|++ +++ ++.+|..|+|||
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L   81 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAA---------DVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTAL   81 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCH---------HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHH
T ss_pred             CCCccHHHHHHHcCCCccccccccccc---------ccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHH
Confidence            345566666666666655544433221         123568899999999999999999998 777 899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccC-CCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcC
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRR-KNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK  201 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d-~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~  201 (763)
                      |+|+..|+.+++++|+++|++++     .+| ..|.||||+|+..|+. +++++|++. |++++.+|..|.||||+|+..
T Consensus        82 ~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A           82 LFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTALHMAAGYVRP-EVVEALVEL-GADIEVEDERGLTALELAREI  154 (244)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-----CCCSSSCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCC-----cCCCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCCCCCCCcHHHHHHHH
Confidence            99999999999999999999888     677 7899999999999999 999999984 889999999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=6.5e-22  Score=177.25  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=105.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHH
Q 004286           81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETIL  160 (763)
Q Consensus        81 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpL  160 (763)
                      +..|.||||+|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|..|+|||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-----APDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-----CCCTTSCCHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCHH
Confidence            56789999999999999999999999998 99999999999999999999999999999999998     8999999999


Q ss_pred             HHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhc
Q 004286          161 HYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLAT  200 (763)
Q Consensus       161 h~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~  200 (763)
                      |+|+..|+. +++++|++. |++++.+|.+|.||||+|+.
T Consensus        78 ~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           78 LSAVYEGHV-SCVKLLLSK-GADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHhCC
Confidence            999999999 999999995 99999999999999999954

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=4.1e-22  Score=207.78  Aligned_cols=139  Identities=20%  Similarity=0.162  Sum_probs=122.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccc------cCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhccccccccCC
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEAR------ITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQLKVLKIGD   81 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~------~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~d   81 (763)
                      .++|+.|+..|+.+.++.++..  +.+++.      .+..|+||||+|+..   |+.+++++|+++|      ++++.+|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g------advn~~d  223 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG------GHLDAKA  223 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS------SCTTCCC
T ss_pred             HHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC------CCCCCCC
Confidence            4679999999999999999987  778777      689999999999997   8999999999998      6799999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHH
Q 004286           82 ERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH  161 (763)
Q Consensus        82 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh  161 (763)
                      ..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++           .|.||||
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----------~g~tpLh  291 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-----------TFAFPLH  291 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----------TTSSCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----------CCCChhH
Confidence            9999999999999999999999999999 999999999999999999999999999999874           4789999


Q ss_pred             HHHHcCCh
Q 004286          162 YAISGYYF  169 (763)
Q Consensus       162 ~A~~~g~~  169 (763)
                      +|+..|+.
T Consensus       292 ~A~~~g~~  299 (301)
T 2b0o_E          292 VDYSWVIS  299 (301)
T ss_dssp             --------
T ss_pred             HHHhcCCc
Confidence            99999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2.2e-22  Score=200.65  Aligned_cols=138  Identities=20%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCccccCCCC
Q 004286           78 KIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL-CASVDDGYNYSRRKNG  156 (763)
Q Consensus        78 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~d~~G  156 (763)
                      +..|..|.||||+|+..|+.++++.|++.|++ ++.+|..|+||||+||..|+.+++++|+++ |++++     .+|..|
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-----~~d~~g  140 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-----QQNKLG  140 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-----CCCTTS
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-----ccCCCC
Confidence            34567789999999999999999999999998 999999999999999999999999999999 99998     899999


Q ss_pred             ChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccc
Q 004286          157 ETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEE  230 (763)
Q Consensus       157 ~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~  230 (763)
                      +||||+|+..|+. +++++|+++ |++++.+|.+|.||||+|+..+       ..++++.|++.|+..+..+.+
T Consensus       141 ~tpL~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~-------~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          141 DTALHAAAWKGYA-DIVQLLLAK-GARTDLRNIEKKLAFDMATNAA-------CASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             CCHHHHHHHHTCH-HHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHH-------HHHHHC---------------
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHc-CCCCccccCCCCCHHHHhcchh-------HHHHHHHHhccchhhhccchh
Confidence            9999999999999 999999995 9999999999999999999987       579999999999998876654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3.1e-21  Score=205.67  Aligned_cols=166  Identities=12%  Similarity=0.067  Sum_probs=118.3

Q ss_pred             CCCCChHHHHHHHc-CCHHHHHHHHHHhhhhccccccccCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004286           42 TRSGGTALHIAVSD-GQEEIVEDLVRIIHEKQQLKVLKIGD--ERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN  118 (763)
Q Consensus        42 d~~g~TpLh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  118 (763)
                      +..+.|+||.|+.. |+.++++.|+++|      ++++..|  ..|.||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~G------advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G  268 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHG------ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAG  268 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTT------CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcC------CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCC
Confidence            34567899999999 9999999999998      6688888  8999999999999999999999999999 99999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcc--ccccccccCCCcHHH
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE--KLVNFVNERGVSPLH  196 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~--~~~~~~d~~G~TpLh  196 (763)
                      +||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..|+. +++++|+....  .+....+..+.|+++
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~-----~~d~~G~TpL~~A~~~g~~-~iv~lLl~~~~~~~~~~~~~~~~~t~l~  342 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGADLG-----ARDSEGRDPLTIAMETANA-DIVTLLRLAKMREAEAAQGQAGDETYLD  342 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHHHC-----------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcCCCC-----CcCCCCCCHHHHHHHCCCH-HHHHHHHHcCCCcccccccCCCCCCHHH
Confidence            999999999999999999999999999     8999999999999999999 99999998522  234456677899999


Q ss_pred             HHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          197 LLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       197 ~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      .+......     ..+-.+.|..++.+++
T Consensus       343 i~~~~~~~-----~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          343 IFRDFSLM-----ASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHhh-----cCCCHHHHHhcCCCcC
Confidence            88775421     1244455555555443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=6e-21  Score=196.59  Aligned_cols=141  Identities=15%  Similarity=0.043  Sum_probs=125.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGL---GNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      .++||.|+..|+.+.++.+++.|.+.+....++..|..|+||||+|+..   |+.+++++|+++|++ ++.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence            4789999999999999999999966544333777799999999999999   899999999999999 999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      |+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..|+. +++++|++. |+        +.+++|.++..+
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~-----~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~-ga--------~~~~~~~~v~~~  274 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIE-----IANESGETPLDIAKRLKHE-HCEELLTQA-LS--------GRFNSHVHVEYE  274 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHH-HT--------TCCCSSCCCCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-----CccCCCCCHHHHHHHcCCH-HHHHHHHHc-CC--------CCCCcceeeecc
Confidence            99999999999999999999999     8999999999999999999 999999995 54        345666555543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.5e-20  Score=159.20  Aligned_cols=91  Identities=33%  Similarity=0.497  Sum_probs=60.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHH
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFL  124 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~  124 (763)
                      |+||||+||..|+.+++++|++.|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g------~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHH
Confidence            566666666666666666666665      45666666666666666666666666666666666 66666666666666


Q ss_pred             HHHcCCHHHHHHHHHcCC
Q 004286          125 AARHGHKDAFLCLHYLCA  142 (763)
Q Consensus       125 A~~~g~~~~v~~Ll~~ga  142 (763)
                      |+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            666666666666666665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=7.8e-20  Score=154.70  Aligned_cols=93  Identities=30%  Similarity=0.459  Sum_probs=87.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHH
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY  162 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~  162 (763)
                      +|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHH
Confidence            489999999999999999999999998 99999999999999999999999999999999999     899999999999


Q ss_pred             HHHcCChHHHHHHHHHhcccc
Q 004286          163 AISGYYFVDLAFQIIHLYEKL  183 (763)
Q Consensus       163 A~~~g~~~~iv~~LL~~~~~~  183 (763)
                      |+..|+. +++++|++. |++
T Consensus        75 A~~~~~~-~~~~~Ll~~-ga~   93 (93)
T 1n0q_A           75 AARNGHL-EVVKLLLEA-GAY   93 (93)
T ss_dssp             HHHTTCH-HHHHHHHHT-TCC
T ss_pred             HHHcCCH-HHHHHHHHc-CCC
Confidence            9999999 999999984 653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.2e-19  Score=186.83  Aligned_cols=128  Identities=23%  Similarity=0.198  Sum_probs=118.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHccCCCcc------ccccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcccccccc
Q 004286            9 QLKKGLFKSAMKGKWNEVVENYGKDDRIH------EARITRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQLKVLKI   79 (763)
Q Consensus         9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~------~~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~   79 (763)
                      ..-.+|+.|+..|+.+.+..++..  +.+      ++..|..|+||||+||..   |+.+++++|+++|      +++|.
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g------a~in~  200 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS------GNLDK  200 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC------SCTTC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC------CCccc
Confidence            345789999999999999999988  555      445588999999999999   8999999999998      77999


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 004286           80 GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVD  145 (763)
Q Consensus        80 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  145 (763)
                      +|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          201 QTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999 99999999999999999999999999999998654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=4.2e-20  Score=163.19  Aligned_cols=108  Identities=27%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCCh
Q 004286           79 IGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGET  158 (763)
Q Consensus        79 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~T  158 (763)
                      .+|.+|+||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-----ARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-----CCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-----ccCCCCCC
Confidence            4567777777777777777777777777776 77777777777777777777777777777777776     67777777


Q ss_pred             HHHHHHHcCChHHHHHHHHHhccccccccccCCCcH
Q 004286          159 ILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSP  194 (763)
Q Consensus       159 pLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~Tp  194 (763)
                      |||+|+..++. +++++|++ .|++++.++..|.||
T Consensus        78 pl~~A~~~~~~-~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           78 PEHLAKKNGHH-EIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             TTHHHHTTTCH-HHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HHHHHHHCCCH-HHHHHHHH-cCCCCCcCCcccccc
Confidence            77777777777 77777777 477777777777766

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=2.6e-20  Score=164.56  Aligned_cols=109  Identities=27%  Similarity=0.381  Sum_probs=101.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCC
Q 004286           40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENE  119 (763)
Q Consensus        40 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  119 (763)
                      .+|.+|+||||+||..|+.+++++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG------ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT------CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCC
Confidence            46889999999999999999999999988      67899999999999999999999999999999998 999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHH
Q 004286          120 TPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETIL  160 (763)
Q Consensus       120 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpL  160 (763)
                      ||||+|+..|+.+++++|+++|++++     .++..|.||=
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga~~n-----~~~~~~~~~~  112 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGADVN-----ARSWGSSHHH  112 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSSSHH-----HHSCCCC---
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCC-----cCCccccccc
Confidence            99999999999999999999999998     8999998873

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=2.4e-19  Score=191.08  Aligned_cols=147  Identities=17%  Similarity=0.157  Sum_probs=117.0

Q ss_pred             hHHHHHHHHc-CCHHHHHHHHccCCCccccccC--CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchH
Q 004286           11 KKGLFKSAMK-GKWNEVVENYGKDDRIHEARIT--RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTP   87 (763)
Q Consensus        11 ~~~L~~aa~~-g~~~~v~~lL~~~~~~~~~~~d--~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~Tp   87 (763)
                      .++||.|+.. |+.+.+..+|..  +++++..+  ..|+||||+||..|+.++|++|+++|      ++++.+|..|+||
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G------advn~~d~~G~Tp  271 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG------ANVNQADSAGRGP  271 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCCCCCCCCH
Confidence            5689999999 999999999987  88888888  89999999999999999999999998      7799999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcC
Q 004286           88 LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGY  167 (763)
Q Consensus        88 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g  167 (763)
                      ||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+....  .....+..+.|+|+.+....
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~--~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREA--EAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--cccccCCCCCCHHHHHHHHH
Confidence            9999999999999999999999 99999999999999999999999999998875432  22246677889998876654


Q ss_pred             C
Q 004286          168 Y  168 (763)
Q Consensus       168 ~  168 (763)
                      .
T Consensus       349 ~  349 (368)
T 3jue_A          349 L  349 (368)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.8e-17  Score=143.67  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCC
Q 004286           77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNG  156 (763)
Q Consensus        77 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G  156 (763)
                      +...|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++     .+|..|
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g   90 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-----AQDKFG   90 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTS
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccccCC
Confidence            444566667777777777777777777776666 66666677777777777777777777777776666     666677


Q ss_pred             ChHHHHHHHcCChHHHHHHH
Q 004286          157 ETILHYAISGYYFVDLAFQI  176 (763)
Q Consensus       157 ~TpLh~A~~~g~~~~iv~~L  176 (763)
                      .||||+|+..|+. +++++|
T Consensus        91 ~tpl~~A~~~~~~-~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNE-DLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCH-HHHHHH
T ss_pred             CcHHHHHHHcCCH-HHHHHh
Confidence            7777777777776 666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.4e-17  Score=144.11  Aligned_cols=95  Identities=25%  Similarity=0.316  Sum_probs=85.2

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCC
Q 004286           36 IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERN  115 (763)
Q Consensus        36 ~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  115 (763)
                      ......|.+|+||||+||..|+.+++++|++.|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   87 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANG------ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQD   87 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccc
Confidence            344557889999999999999999999999987      67899999999999999999999999999999998 99999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHH
Q 004286          116 HENETPFFLAARHGHKDAFLCL  137 (763)
Q Consensus       116 ~~g~TpLh~A~~~g~~~~v~~L  137 (763)
                      ..|+||||+|+..|+.+++++|
T Consensus        88 ~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           88 KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	763
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 6e-12
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA 106
           T LH+A   G   IV++L+      Q+     + + +  TPLH+AA  G+  + K +   
Sbjct: 2   TPLHVASFMGHLPIVKNLL------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 107 DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISG 166
             + +  +  +++TP   AAR GH +    L    A+ +                  I+ 
Sbjct: 56  KAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT-------PLHIAA 107

Query: 167 YYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
                     +   E     + ++G +PLH+ A
Sbjct: 108 REGHVETVLALLEKEASQACMTKKGFTPLHVAA 140

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-09
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 45/188 (23%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
                T LH+A   G  E+ + L+      Q    +    +   TPLH AA +G+ +M K
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLL------QNKAKVNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 102 CIATADPRL--------------------------------IGERNHENETPFFLAARHG 129
            +   +                                         +  TP  +AA++G
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 130 HKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNE 189
                  L    A  +     +  KNG T LH A+          +++       +    
Sbjct: 144 KVRVAELLLERDAHPN-----AAGKNGLTPLHVAVHHNNLD--IVKLLLPRGGSPHSPAW 196

Query: 190 RGVSPLHL 197
            G +PLH+
Sbjct: 197 NGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 45/202 (22%), Positives = 64/202 (31%), Gaps = 20/202 (9%)

Query: 4   GIDIDQLKKG----LFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEE 59
               +   K     L  +      + V     +    H      +G T LHIA    Q E
Sbjct: 155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVE 212

Query: 60  IVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENE 119
           +   L++                +G TPLH+AA  G+  M   + +         N    
Sbjct: 213 VARSLLQYGGSANA------ESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGL 265

Query: 120 TPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL 179
           TP  L A+ GH      L      VD            T LH A        + F + H 
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-----TPLHVASHYGNIKLVKFLLQHQ 320

Query: 180 YEKLVNFVNERGVSPLHLLATK 201
            +   N   + G SPLH  A +
Sbjct: 321 ADV--NAKTKLGYSPLHQAAQQ 340

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 33/158 (20%)

Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR----------- 66
           A +    E+V               +SG T LH+   +G   + + L++           
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296

Query: 67  ----------------IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADP 108
                           +    Q    +    + G +PLH AA  G+  +   +    A P
Sbjct: 297 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 109 RLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDD 146
               E + +  TP  +A R G+      L  +      
Sbjct: 357 N---EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 35/185 (18%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLV---------------------------RIIHEKQQL 74
            +   T LH A   G   +V+ L+                            ++   ++ 
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 75  KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAF 134
                  ++G TPLH+AA  G V + + +   D            TP  +A  H + D  
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 135 LCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSP 194
             L     S       S   NG T LH A            + +      N  + +GV+P
Sbjct: 182 KLLLPRGGSPH-----SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTP 234

Query: 195 LHLLA 199
           LHL A
Sbjct: 235 LHLAA 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
           TP+ +A+  G   IV+ +L+    +    N + +  + +A       V + LL+     +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NK 56

Query: 518 TVFRKVDDQGNSALHLAATLGDHKPW--LIPGAALQMQWELKWYEFVRDSMPFHFFVRYN 575
                      + LH AA +G       L+   A         +  +  +          
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 576 DQNK 579
              +
Sbjct: 117 ALLE 120

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 32/149 (21%)

Query: 29  NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV----------------------- 65
           N  +  +  + R+ + G TAL  A   G  E+++ L+                       
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 66  ---RIIHEKQQLKVLKIG------DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNH 116
                  E     +L  G       ERG TPL +A    ++ + + +   +   I + + 
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 117 ENETPFFLAARHGHKDAFLCLHYLCASVD 145
           + +T   LA     K     L    AS D
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 19/165 (11%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
               L  AV +   ++V+ L+     +    V    +E G TPLH A  +    + + + 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL-----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI 164
                    R     TPF LAA  G                          G T    A 
Sbjct: 60  RHGAD-PVLRKKNGATPFLLAAIAGS-----VKLLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 165 SGYYFVDLAFQIIH--------LYEKLVNFVNERGVSPLHLLATK 201
                  L F              ++    + + G + L   A K
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 14  LFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHE 70
           L K+       ++V+     G +      +    G T LH AV   +E+IVE L+R   +
Sbjct: 9   LIKAVQNEDV-DLVQQLLEGGAN---VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 71  KQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH 130
                      ++      + A +        +  +    + E +    T F  AA +G 
Sbjct: 65  PVL-------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 131 KDAFLCLHYLCASVD-----DGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVN 185
             A   L+   A+V+            RK G T L  A    + V++   ++      VN
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLKILLDEMGADVN 176

Query: 186 FVNERG 191
             +  G
Sbjct: 177 ACDNMG 182

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 39  ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVS 98
             +T  G TALH+AV    E  ++ L   +      + L + ++ G T LH+AA LG  S
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFL---LGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 99  MCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCAS----VDDGYNYSRRK 154
             + +  A    +        T   LA R         L     S      D Y    + 
Sbjct: 60  TVEKL-YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 155 NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNER 190
                 H   +     +   +     E     +   
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 110 LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS 165
           + G    + +T   LA  H H+     L  L  S    Y   +   G+T LH A  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFL--LGFSAGHEYLDLQNDLGQTALHLAAI 54

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 14/127 (11%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIG-------DERGSTPLHIAAGLGNVSM 99
           T LH  +            +   +     ++K              +  +   G    S+
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 100 CKCIATAD--PRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE 157
            + +        ++  ++   +T   +AAR G+      L    A           K+G 
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF-----IANKSGL 293

Query: 158 TILHYAI 164
             + +  
Sbjct: 294 RPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 18/174 (10%)

Query: 38  EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNV 97
              +   G T LH   S    E+V+ LV+             GD  G + L  A    N 
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGESCLVKAVKSVNN 153

Query: 98  SMCKCIATADPRL---IGERNHENETPFFLAARHGH--------KDAFLCLHYLCASVDD 146
                       L   +   +  N T                  K     L        +
Sbjct: 154 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 213

Query: 147 GYNYSRRKNGETILHYA-ISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
               S     E+  +         +     +  +   ++N  +  G + L++ A
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 18  AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVL 77
           A K   + ++    K         T    +  +    + ++ I+E+L     +     +L
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL---DLKWIIANML 252

Query: 78  KIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAA 126
              D  G T L+IAA LGN+S+   +    ADP +    N     P    A
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI---ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 7/207 (3%)

Query: 14  LFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQ 73
             +  +  +  E+  +   D     +    S     H++     +E+ +          Q
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP-----NTQ 96

Query: 74  LKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDA 133
           L +    DE G+TPLH    + N+ + K +           ++  E+    A +  +   
Sbjct: 97  LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYD 155

Query: 134 FLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVS 193
                 L   +             TILH+ I        +    +  + L+ ++ ++   
Sbjct: 156 SGTFEALLDYLYPCLI-LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 194 PLHLLATKPNAFRSGSHLGLCTGIIYH 220
           P+     +  +  +  +      I+ +
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILEN 241

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAG 93
           G T L+IA   G   IV+ L+             I ++ G  P+   AG
Sbjct: 259 GDTCLNIAARLGNISIVDALL------DYGADPFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 438 EDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLA 497
              +   +T           T    AAK  +  ++  I+K     I    +EK++     
Sbjct: 171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 230

Query: 498 VENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHK 541
              R+  + + L    II   +  + D  G++ L++AA LG+  
Sbjct: 231 NGERKDSILENLDLKWIIANMLNAQ-DSNGDTCLNIAARLGNIS 273

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
            ++G T LH A S  + EI   L+      +        D   +T +H AA  GN+ M  
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLL------EGGANPDAKDHYEATAMHRAAAKGNLKMIH 153

Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
            +          ++ E  TP  LA      +    L    AS+         K  +T L 
Sbjct: 154 ILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY-----IENKEEKTPLQ 207

Query: 162 YAISGY 167
            A  G 
Sbjct: 208 VAKGGL 213

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 45/213 (21%), Positives = 68/213 (31%), Gaps = 40/213 (18%)

Query: 14  LFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQ 73
           +   A  GK  E+ E     D+    R  +   TALH A S G  EIVE L+++      
Sbjct: 7   VCNLAYSGKLEELKE-SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 74  LK---------------------------VLKIGDERGSTPLHIAAGLGNVSMCKCI--A 104
                                         +   ++ G TPLH AA      +   +   
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI 164
            A+P     ++H   T    AA  G+      L Y  AS        +   G T LH A 
Sbjct: 126 GANPD---AKDHYEATAMHRAAAKGNLKMIHILLYYKAST-----NIQDTEGNTPLHLAC 177

Query: 165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
                 +    +       +   N+   +PL +
Sbjct: 178 DEERVEEAKLLVSQGAS--IYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 88  LHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDG 147
           +   A  G +   K    AD  L    + ++ T    A   GH +    L  L   V+D 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 148 YNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPN 203
            +              I+     D   + +      VN VN+ G +PLH  A+K  
Sbjct: 67  DDAGWS-------PLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 115

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 46/197 (23%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC---- 100
           G + LH+A+   ++ +  +++R +        L   +    TPLH+A       +     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEALL 59

Query: 101 ----------------------------------KCIATADPRLIGERNHENETPFFLAA 126
                                              C       ++   N+   T   LA+
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 119

Query: 127 RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNF 186
            HG+      L  L A      N     NG T LH A+       ++  +    +   N 
Sbjct: 120 IHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV--NR 173

Query: 187 VNERGVSPLHLLATKPN 203
           V  +G SP  L   +P+
Sbjct: 174 VTYQGYSPYQLTWGRPS 190

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 23  WNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE 82
                  +     I++ R  +SGGTALH+A + G  E+++ L++  ++      + I D 
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------VNIKDY 230

Query: 83  RGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHK 131
            G TPLH AA  G    C+ +     D       N   +T F +A      
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEA---VNKVGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL 140
            + G T LH+AA  G   + K +  A    +  ++++  TP   AA  G ++A   L   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 141 CASVDDGYNYSRRKNGETILHYA 163
              ++     +  K G+T    A
Sbjct: 255 LCDME-----AVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 35  RIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGL 94
           +  + ++    G     A S G  E V  L+      ++   +   +  G T LH A   
Sbjct: 30  KRKKTKVKFDDGAVFLAACSSGDTEEVLRLL------ERGADINYANVDGLTALHQACID 83

Query: 95  GNVSMCKCI 103
            NV M K +
Sbjct: 84  DNVDMVKFL 92

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 45  GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
           G T LHIAV  G    V  LV +  +  +   L I +    TPLH+ A +  +     + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHL-AVITTLPSVVRLL 59

Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY 162
                     +   +T   LA  H             A+       +R  +G T LH 
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCL-RALLDSAAPGTLDLEARNYDGLTALHV 116

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 82  ERGSTPLHIAAGLGNVSMCKCIATADPRL---IGERNHENETPFFLAARHGHKDAFLCLH 138
           E G TPLHIA   GN+     +     +    +   N+  +TP  LA           L 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 139 YLCASVDDGYNY 150
              AS      +
Sbjct: 61  TAGASPMALDRH 72

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 84  GSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
           GS+ LH A+G G + + + +  + AD  L   +N  N+TP  +A      D
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRRVID 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 8/151 (5%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA 106
             LH A  + +   V++L+       +  +L   D+ G  PLH +       +   + + 
Sbjct: 2   YPLHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

Query: 107 DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISG 166
              +  +   ++         H                        +   + +    ++ 
Sbjct: 57  MENVNLDDYPDDSGWTP---FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 113

Query: 167 YYFVDLAFQIIHLYEKLVNFVNERGVSPLHL 197
                   Q +      V   ++    PLH 
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHR 144

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAF-LCLHY 139
           D+    PLH AA +G++ + + +       +  ++ +  TP F A   GH DA  L +  
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 140 LCASVDDGYNYSRRKNGETILHYAIS 165
             A  D          G      A++
Sbjct: 195 YGAEYD-----LVDNKGAKAEDVALN 215

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 81  DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL 140
             +G T LH AA + N+ + K +         +++ + +TP  LAA+ G  +  + L   
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 141 CASVDDGYNYSRRKNGETILHYAIS 165
            ASV+     +      T    A +
Sbjct: 244 GASVE-----AVDATDHTARQLAQA 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 44  SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
            G TALH A       IV+ LV      +  +     DE G TP+ +AA  G + +   +
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-----DEDGKTPIMLAAQEGRIEVVMYL 240

Query: 104 --ATADPRLIGERNHENETPFFLAARHGHKD 132
               A    +   +  + T   LA  + H +
Sbjct: 241 IQQGAS---VEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 27  VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQLKVLKIGDER 83
           V+    +   ++ +    G T + +A  +G+ E+V  L++    +            D  
Sbjct: 203 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV---------DAT 253

Query: 84  GSTPLHIAAGLGNVSMCK 101
             T   +A    + ++  
Sbjct: 254 DHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 8/172 (4%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEK--QQLKVLKIGDERGSTPLHIAAGLGNVSM 99
            R   T LH   S+   E  EDL+    ++       +   D   +TPL +A       +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI 159
              +  A          E       AA          L+      D             I
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 149

Query: 160 LHYAISGYYFVDLAFQIIHLYE------KLVNFVNERGVSPLHLLATKPNAF 205
           + +             +    +         +    +G + LH  A   N  
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 201

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 11/106 (10%), Positives = 23/106 (21%), Gaps = 16/106 (15%)

Query: 36  IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG 95
                  +    A  ++  DG  ++V     +                    L       
Sbjct: 243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ------------GFYMLRNLIRRNDEV 290

Query: 96  NVSMCKCI----ATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
            +   + +                 +      LA R G++ A   L
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 16/178 (8%), Positives = 46/178 (25%), Gaps = 33/178 (18%)

Query: 23  WNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDE 82
           W  + +++   + +    ++      + +  +   E++ + L        +        +
Sbjct: 24  WENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR------NAK 77

Query: 83  RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA 142
           +  +  H                       ++  ++E   F+AA  G       L  LC 
Sbjct: 78  QLWSDAH-----------------------KKGIKSEVICFVAAITGCSS---ALDTLCL 111

Query: 143 SVDDGYNY-SRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA 199
            +         +         A    +   L         +++  +         L A
Sbjct: 112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 169

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 0.002
 Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 17/118 (14%)

Query: 47  TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA 106
            A       G++ +   + R ++            +       ++   G       + T 
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVN----------RLKEMHDAFKLSNPDGVFD----LVTK 270

Query: 107 DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI 164
              L G                   D    L  +          +   +   +L  A+
Sbjct: 271 SECLQG---FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 59  EIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN 118
           +++ DL+      Q  ++    D+ G T LH+AA        K       RL+      N
Sbjct: 3   QVISDLL-----AQGAELNATMDKTGETSLHLAARFARADAAK-------RLLDAGADAN 50

Query: 119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH 178
                         A   +      + +       +  +      ++    ++   + + 
Sbjct: 51  SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 110

Query: 179 LYEKLVNFVNERGVSPLH 196
             +  +N  +  G + LH
Sbjct: 111 TADADINAADNSGKTALH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 42  TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
           T +   +L  AV       +        +  +   L  G E   T LH+A    + +   
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
            +   D  +    N + +T     A H                         ++GET L 
Sbjct: 63  IV---DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 119

Query: 162 YAIS 165
            A  
Sbjct: 120 IAKR 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	763
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=394.27  Aligned_cols=375  Identities=20%  Similarity=0.215  Sum_probs=263.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      ||||.||..|+.+.|+.++..  |++++..|..|+||||+||..|+.++|++|+++|      ++++.+|.+|+||||+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~--g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g------adi~~~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK------AKVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT------CCSSCCCTTSCCHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc------CCCCCCCCCCCCHHHHH
Confidence            799999999999999999988  8999999999999999999999999999999998      67999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHH
Q 004286           92 AGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVD  171 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~  171 (763)
                      +..|+.+++++|+..+++ .........+++..+...+...........+...+     ..+.++.++|+.|+..++. +
T Consensus        74 ~~~g~~~~~~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~a~~~~~~-~  146 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFTPLHVAAKYGKV-R  146 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-----CCCTTSCCHHHHHHHTTCH-H
T ss_pred             HHcCCHHHHHHHHHhhhc-cccccccccchhhhhhhhccccccccccccccccc-----ccccccchHHHHHHHcCCH-H
Confidence            999999999999988776 44455555556666666655555555555555554     5555666666666666666 6


Q ss_pred             HHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccH
Q 004286          172 LAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENY  251 (763)
Q Consensus       172 iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (763)
                      +++.|+++ +++++..+.+|.+|||+|+..++       .+++++|+++|++++..+..              +.+|+++
T Consensus       147 ~v~~ll~~-~~~~~~~~~~~~~~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~~--------------~~t~l~~  204 (408)
T d1n11a_         147 VAELLLER-DAHPNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWN--------------GYTPLHI  204 (408)
T ss_dssp             HHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTT--------------CCCHHHH
T ss_pred             HHHHHHHc-CCCCCcCCCcCchHHHHHHHcCC-------HHHHHHHHhcCCcccccCCC--------------CCCcchh
Confidence            66666653 55666666666666666666553       45666666666665544422              3344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccch
Q 004286          252 ETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKP  331 (763)
Q Consensus       252 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~  331 (763)
                      ............    +..........                                    ...+.++++.+....  
T Consensus       205 ~~~~~~~~~~~~----l~~~~~~~~~~------------------------------------~~~~~t~l~~a~~~~--  242 (408)
T d1n11a_         205 AAKQNQVEVARS----LLQYGGSANAE------------------------------------SVQGVTPLHLAAQEG--  242 (408)
T ss_dssp             HHHTTCHHHHHH----HHHTTCCTTCC------------------------------------CTTCCCHHHHHHHTT--
T ss_pred             hhccchhhhhhh----hhhcccccccc------------------------------------CCCCCCHHHHHHHhC--
Confidence            333222222111    11111000000                                    001112222222111  


Q ss_pred             hhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCce-eccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCC
Q 004286          332 MLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYE-YDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGD  410 (763)
Q Consensus       332 ~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~-~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~  410 (763)
                                              ..++++.+++.+.... .|.+|.|||+.++..++.                     
T Consensus       243 ------------------------~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~---------------------  277 (408)
T d1n11a_         243 ------------------------HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV---------------------  277 (408)
T ss_dssp             ------------------------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH---------------------
T ss_pred             ------------------------cHhHhhhhhccccccccccCCCCChhhhhhhcCcH---------------------
Confidence                                    1256677777666433 477788887777766443                     


Q ss_pred             CCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCC
Q 004286          411 QQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEK  490 (763)
Q Consensus       411 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G  490 (763)
                       ++.++|+++|+                         +.+..+..+.||||.|+..++.++++.+++ .+.+++.+|.+|
T Consensus       278 -~i~~~Ll~~g~-------------------------~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G  330 (408)
T d1n11a_         278 -PVADVLIKHGV-------------------------MVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLG  330 (408)
T ss_dssp             -HHHHHHHHHTC-------------------------CTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTS
T ss_pred             -HHHHHHHHCCC-------------------------ccccccccccccchhhcccCcceeeeeecc-ccccccccCCCC
Confidence             23344443333                         223356679999999999999999999999 577889999999


Q ss_pred             CchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCCCC
Q 004286          491 KNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGDHK  541 (763)
Q Consensus       491 ~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~~~  541 (763)
                      +||||+||++|+.++|++|+++|+    ++|.+|++|+||||+|++.|+..
T Consensus       331 ~T~Lh~A~~~g~~~iv~~Ll~~GA----d~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         331 YSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999998    69999999999999999999944

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-43  Score=379.79  Aligned_cols=372  Identities=18%  Similarity=0.221  Sum_probs=295.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA  125 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A  125 (763)
                      .||||+||..|+.++|++|+++|      +++|.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g------~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A   73 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRG------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT------CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHH
Confidence            49999999999999999999998      67999999999999999999999999999999998 999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCc
Q 004286          126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAF  205 (763)
Q Consensus       126 ~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~  205 (763)
                      +..|+.+++++|+..+.+..     .......+++..+...+.. ........ .+...+..+.+|.++|+.|+..++  
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~--  144 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPN-----LATTAGHTPLHIAAREGHV-ETVLALLE-KEASQACMTKKGFTPLHVAAKYGK--  144 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTT-----CCCTTCCCHHHHHHHHTCH-HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTC--
T ss_pred             HHcCCHHHHHHHHHhhhccc-----cccccccchhhhhhhhccc-cccccccc-ccccccccccccchHHHHHHHcCC--
Confidence            99999999999999998887     7788889999999999998 77666666 577889999999999999999985  


Q ss_pred             cCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 004286          206 RSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAED  285 (763)
Q Consensus       206 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~  285 (763)
                           .++++.|+++|++++..+.              .+.+|++++...+.+++    ++.+++.+.++....      
T Consensus       145 -----~~~v~~ll~~~~~~~~~~~--------------~~~~~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~------  195 (408)
T d1n11a_         145 -----VRVAELLLERDAHPNAAGK--------------NGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPA------  195 (408)
T ss_dssp             -----HHHHHHHHHTTCCTTCCCS--------------SCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCC------
T ss_pred             -----HHHHHHHHHcCCCCCcCCC--------------cCchHHHHHHHcCCHHH----HHHHHhcCCcccccC------
Confidence                 6999999999999987663              35678888877666543    444555554433221      


Q ss_pred             CccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHh
Q 004286          286 PERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLR  365 (763)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~  365 (763)
                           .                         .+.++++.......                          .++...++.
T Consensus       196 -----~-------------------------~~~t~l~~~~~~~~--------------------------~~~~~~l~~  219 (408)
T d1n11a_         196 -----W-------------------------NGYTPLHIAAKQNQ--------------------------VEVARSLLQ  219 (408)
T ss_dssp             -----T-------------------------TCCCHHHHHHHTTC--------------------------HHHHHHHHH
T ss_pred             -----C-------------------------CCCCcchhhhccch--------------------------hhhhhhhhh
Confidence                 1                         11233333222111                          256667777


Q ss_pred             ccC-CceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCC
Q 004286          366 RTS-LYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGG  444 (763)
Q Consensus       366 ~~~-~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (763)
                      ... ....+.+|.||||+|+..+..+                      +++++...                        
T Consensus       220 ~~~~~~~~~~~~~t~l~~a~~~~~~~----------------------~~~~~~~~------------------------  253 (408)
T d1n11a_         220 YGGSANAESVQGVTPLHLAAQEGHAE----------------------MVALLLSK------------------------  253 (408)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHH----------------------HHHHHHTT------------------------
T ss_pred             ccccccccCCCCCCHHHHHHHhCcHh----------------------Hhhhhhcc------------------------
Confidence            666 4455788999999887764432                      11111111                        


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhcccc
Q 004286          445 KTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVD  524 (763)
Q Consensus       445 ~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D  524 (763)
                       ....+..|..|.||||.|++.++.+++++|+++ +.+++..+..+.||||+|+..++.++++++++.+.    ++|.+|
T Consensus       254 -~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~----~in~~d  327 (408)
T d1n11a_         254 -QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKT  327 (408)
T ss_dssp             -TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCC
T ss_pred             -ccccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeeeccccc----cccccC
Confidence             112234577899999999999999999999995 56678889999999999999999999999999987    799999


Q ss_pred             CCCCchhhhHhhcCCCCCcCCchhhhhhhhhhHHHHHHhhcCCccccccccCCCCChhhhhhhh
Q 004286          525 DQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYEFVRDSMPFHFFVRYNDQNKSAKDVFTET  588 (763)
Q Consensus       525 ~~G~TpLH~Aa~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tp~d~~~~~  588 (763)
                      .+|+||||+|++.|+.+++             ++  +++...+   ++.+|++|+||++++.+.
T Consensus       328 ~~G~T~Lh~A~~~g~~~iv-------------~~--Ll~~GAd---~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         328 KLGYSPLHQAAQQGHTDIV-------------TL--LLKNGAS---PNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             TTSCCHHHHHHHTTCHHHH-------------HH--HHHTTCC---SCCCCSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHH-------------HH--HHHCCCC---CCCCCCCCCCHHHHHHHc
Confidence            9999999999999984432             22  2344444   348999999999998766

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-35  Score=298.42  Aligned_cols=175  Identities=19%  Similarity=0.156  Sum_probs=128.4

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004286           39 ARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHEN  118 (763)
Q Consensus        39 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  118 (763)
                      ...|++|+||||+||++|+.+++++|+++|++.   ..++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g   78 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGG   78 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTS
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhccccccccccccccc-cccccccc
Confidence            356899999999999999999999999998542   33788999999999999999999999999999999 99999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----ccccCCCCCh---HHHHHHHcCChHHHHHHHHHhccccccccccC
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGY-----NYSRRKNGET---ILHYAISGYYFVDLAFQIIHLYEKLVNFVNER  190 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~-----~~~~d~~G~T---pLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~  190 (763)
                      .||||+|+..|+.+++++|++.+.......     ....+..+.+   ++......... .....+....+.+++.+|.+
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~in~~d~~  157 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-NEEEPRDEDWRLQLEAENYD  157 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------CCCGGGGTTCCCTT
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchh-HHHHHHhhhcCccccccccc
Confidence            999999999999999999998876544100     0011111122   22222222222 22333333457788999999


Q ss_pred             CCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          191 GVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       191 G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |.||||+|+..++       .+++++|++++++.+
T Consensus       158 g~TpLh~A~~~~~-------~~~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         158 GHTPLHVAVIHKD-------AEMVRLLRDAGADLN  185 (255)
T ss_dssp             SCCHHHHHHHTTC-------HHHHHHHHHHTCCTT
T ss_pred             Ccccccccccccc-------cccccchhccccccc
Confidence            9999999999985       688888888776554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=287.78  Aligned_cols=160  Identities=19%  Similarity=0.236  Sum_probs=109.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA  125 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A  125 (763)
                      .+.|+.+|..|+.+.|+.++...     +.+++.+|.+|+||||+||..|+.+++++|++.+.. ....+..+.++++.|
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~-----~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHC-----GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhC-----CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccccccccccc
Confidence            56677777777777776666543     255667777777777777777777777777777666 555666677777777


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCc
Q 004286          126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAF  205 (763)
Q Consensus       126 ~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~  205 (763)
                      +..|+.+++++|+++|++++     .+|.+|.||||+|+.+|+. +++++|++ .|++++.+|.+|.||||+|+..+.  
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~-----~~d~~g~tpL~~A~~~~~~-e~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~--  148 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVN-----AVNQNGCTPLHYAASKNRH-EIAVMLLE-GGANPDAKDHYEATAMHRAAAKGN--  148 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC--
T ss_pred             ccccccchhHHHhccCceeE-----eeCCCCCchhhHHHHcCCH-HHHHHHHH-CCCCCCCcCCCCCccchhhhhcCC--
Confidence            77777777777777777666     6777777777777777777 77777776 467777777777777777777663  


Q ss_pred             cCCchHHHHHHHHHcCCCCC
Q 004286          206 RSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       206 ~~~~~~~iv~~Ll~~ga~~~  225 (763)
                           .+++++|+++|.+++
T Consensus       149 -----~~~~~~L~~~~~~i~  163 (223)
T d1uoha_         149 -----LKMIHILLYYKASTN  163 (223)
T ss_dssp             -----HHHHHHHHHTTCCSC
T ss_pred             -----cchhhhhccccceee
Confidence                 355555555554443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=287.23  Aligned_cols=193  Identities=25%  Similarity=0.307  Sum_probs=180.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIA   91 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~A   91 (763)
                      ..++.+|..|+.+.|+++|... +.+++.+|.+|+||||+||..|+.+++++|++.+      ......+..+.++++.|
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG------VPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT------CCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccc------ccccccccccccccccc
Confidence            4578899999999999999886 6788999999999999999999999999999987      55777788899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHH
Q 004286           92 AGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVD  171 (763)
Q Consensus        92 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~  171 (763)
                      +..|+.+++++|++++++ ++.+|.+|.||||+|+..|+.+++++|+++|++++     .+|..|.||||+|+..++. +
T Consensus        78 ~~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-----~~~~~~~t~L~~a~~~~~~-~  150 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-----AKDHYEATAMHRAAAKGNL-K  150 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-H
T ss_pred             ccccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-----CcCCCCCccchhhhhcCCc-c
Confidence            999999999999999998 99999999999999999999999999999999998     8999999999999999999 9


Q ss_pred             HHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          172 LAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       172 iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      ++++|++ .+.+++.+|.+|+||||+|+..++       .+++++|+++|++++.
T Consensus       151 ~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~-------~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         151 MIHILLY-YKASTNIQDTEGNTPLHLACDEER-------VEEAKLLVSQGASIYI  197 (223)
T ss_dssp             HHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCSCC
T ss_pred             hhhhhcc-ccceeeeccCCCCceeccccccCc-------HHHHHHHHHCCCCCCC
Confidence            9999998 589999999999999999999985       6999999999888764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-33  Score=287.40  Aligned_cols=181  Identities=24%  Similarity=0.161  Sum_probs=126.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccC-CCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARIT-RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      ++.|+.|+..|+.+.|+.||..  |++++.++ ..|+||||+|+..|+.+++++|++.+      ...+..+..+.+|.+
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~------~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccc------ccccccccccchhhH
Confidence            5667777777777777777766  67766543 45777777777777777777777766      445666667777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----ccccCCCCChHHHHHH
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGY-----NYSRRKNGETILHYAI  164 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~-----~~~~d~~G~TpLh~A~  164 (763)
                      +|+..+..+....+++...+ ....+..|.|++++|+..|+...++.+++...+.+...     ....+..|.||||+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  156 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  156 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred             HHhhcCCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHH
Confidence            77777777777777776655 55566777777777777777777777777666554111     1234456777777777


Q ss_pred             HcCChHHHHHHHHHhccccccccccCCCcHHHHHhcC
Q 004286          165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK  201 (763)
Q Consensus       165 ~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~  201 (763)
                      ++|+. +++++|+++.|++++..+..|.++++.+...
T Consensus       157 ~~~~~-~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~  192 (285)
T d1wdya_         157 EKGHV-EVLKILLDEMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             HHTCH-HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             HcCCH-HHHHHHHhccCCCcccccCCCCccccccccc
Confidence            77777 7777777766777777777777777666554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.3e-35  Score=300.98  Aligned_cols=257  Identities=17%  Similarity=0.214  Sum_probs=198.4

Q ss_pred             ChHHHHHHH-cCCHHHHHHHHHHhhhhccccccccCC-CCCchHHHHHHHcCCHHHHHHH--------HhcCCCccCCCC
Q 004286           46 GTALHIAVS-DGQEEIVEDLVRIIHEKQQLKVLKIGD-ERGSTPLHIAAGLGNVSMCKCI--------ATADPRLIGERN  115 (763)
Q Consensus        46 ~TpLh~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~L--------l~~~~~~~~~~~  115 (763)
                      .||||+|+. .|+.++++.|.+.+        +|..| .+|+||||+||..|+.++|+.|        ++.|++ +|.+|
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~--------~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d   71 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMD   71 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcC--------CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccC
Confidence            367775554 45566666666643        44445 3588888888888887777665        566888 99999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcc--ccccccccCCCc
Q 004286          116 HENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYE--KLVNFVNERGVS  193 (763)
Q Consensus       116 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~--~~~~~~d~~G~T  193 (763)
                      .+|+||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+..++. ++++.+.....  ..++..+..+.+
T Consensus        72 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-----~~~~~g~t~l~~a~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~  145 (277)
T d2fo1e1          72 CDENTPLMLAVLARRRRLVAYLMKAGADPT-----IYNKSERSALHQAAANRDF-GMMVYMLNSTKLKGDIEELDRNGMT  145 (277)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-----CCCTTCCCHHHHHHHTTCH-HHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             CCCCeeeccccccccccccccccccccccc-----cccccccccccchhhhcch-hhhhhhhhcccccccccccccccch
Confidence            999999999999999999999999999998     8999999999999999999 99888876322  356778889999


Q ss_pred             HHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCC
Q 004286          194 PLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGN  273 (763)
Q Consensus       194 pLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~  273 (763)
                      +.+.+...+..    .....++.                                                         
T Consensus       146 ~~~~~~~~~~~----~~~~~~~~---------------------------------------------------------  164 (277)
T d2fo1e1         146 ALMIVAHNEGR----DQVASAKL---------------------------------------------------------  164 (277)
T ss_dssp             HHHHHHHSCST----THHHHHHH---------------------------------------------------------
T ss_pred             hHHHHHhcccc----cccccccc---------------------------------------------------------
Confidence            99998886531    01111111                                                         


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhh
Q 004286          274 TKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKH  353 (763)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~  353 (763)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (277)
T d2fo1e1         165 --------------------------------------------------------------------------------  164 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccccC
Q 004286          354 TWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNN  433 (763)
Q Consensus       354 ~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~  433 (763)
                               +.+.......        .                                                    
T Consensus       165 ---------~~~~~~~~~~--------~----------------------------------------------------  175 (277)
T d2fo1e1         165 ---------LVEKGAKVDY--------D----------------------------------------------------  175 (277)
T ss_dssp             ---------HHHHTCCSSC--------C----------------------------------------------------
T ss_pred             ---------cccccccccc--------c----------------------------------------------------
Confidence                     1111000000        0                                                    


Q ss_pred             CCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhcc
Q 004286          434 GKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTA  513 (763)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~  513 (763)
                                 .....+..+..|.||||.|+..|+.++++.++...+.+.+.+|..|+||||+||+.|+.++|++|++.+
T Consensus       176 -----------~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g  244 (277)
T d2fo1e1         176 -----------GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  244 (277)
T ss_dssp             -----------SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             -----------ccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence                       000011245679999999999999999999998889999999999999999999999999999999999


Q ss_pred             chhhhhhccccCCCCchhhhHhhcCCCCC
Q 004286          514 IIQETVFRKVDDQGNSALHLAATLGDHKP  542 (763)
Q Consensus       514 ~~~~~~~n~~D~~G~TpLH~Aa~~g~~~~  542 (763)
                      +    ++|.+|.+|+||||+|++.|+.++
T Consensus       245 a----din~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         245 A----SVEAVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             C----CSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             C----CCCCcCCCCCCHHHHHHHcCCHHH
Confidence            7    699999999999999999998443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.1e-33  Score=288.45  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             CCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchh
Q 004286          452 DTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSAL  531 (763)
Q Consensus       452 ~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpL  531 (763)
                      .+..|.||||.|+..|+.++++.|++ .+.+++.+|.+|+||||+||+.|+.++|++|+++|+    ++|.+|++|+|||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga----dv~~~d~~G~TaL  269 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAF  269 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTT
T ss_pred             ccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHH
Confidence            34579999999999999999999998 566789999999999999999999999999999998    6899999999999


Q ss_pred             hhHhh
Q 004286          532 HLAAT  536 (763)
Q Consensus       532 H~Aa~  536 (763)
                      |+|++
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=272.27  Aligned_cols=158  Identities=20%  Similarity=0.216  Sum_probs=136.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccC---CCCCCCChHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIG---ERNHENETPF  122 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~---~~~~~g~TpL  122 (763)
                      .||||+||..|+.++|+.|++.+.     .+++.+|.+|+||||+|+..|+.+++++|+++|++ ++   ..+..|.||+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~   74 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-VNLDDYPDDSGWTPF   74 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTT-CCGGGCCCTTSCCHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-----CcccccCCCCCCHHHHHHHcCCccccchhhhhhcc-ccccccccccccccc
Confidence            489999999999999999998742     67889999999999999999999999999999886 44   5677899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCC
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~  202 (763)
                      |+|+..+..++++.++..+...+   ....+..+.|||+.++..++. ++++.|++ .+.+.+..|.+|+||||+|+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~  149 (229)
T d1ixva_          75 HIACSVGNLEVVKSLYDRPLKPD---LNKITNQGVTCLHLAVGKKWF-EVSQFLIE-NGASVRIKDKFNQIPLHRAASVG  149 (229)
T ss_dssp             HHHHHHTCHHHHHHHHSSSSCCC---TTCCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccc---ccccccccccccccccccchh-hhhhhhhh-hcccccccCCCCCCccchhhhcc
Confidence            99999999999999999887654   225778899999999999999 99999998 48889999999999999999988


Q ss_pred             CCccCCchHHHHHHHHHcC
Q 004286          203 NAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       203 ~~~~~~~~~~iv~~Ll~~g  221 (763)
                      +       .+++++|+++|
T Consensus       150 ~-------~~~~~~Ll~~~  161 (229)
T d1ixva_         150 S-------LKLIELLCGLG  161 (229)
T ss_dssp             C-------HHHHHHHHTTT
T ss_pred             c-------ccccccccccc
Confidence            5       46666665543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-32  Score=277.31  Aligned_cols=195  Identities=19%  Similarity=0.158  Sum_probs=176.5

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHccCCCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCC
Q 004286            8 DQLKKGLFKSAMKGKWNEVVENYGKDDRIH---EARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERG   84 (763)
Q Consensus         8 ~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g   84 (763)
                      ++..||||+||..|+.+.+..||..  +++   ++..|..|+||||+||..|+.+++++|+++|      ++++.+|.+|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~--~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g------a~i~~~d~~g   78 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG------AGVLVAERGG   78 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSSCCCTTS
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHc--CCCcccccCcCCCCCCccchHHhhccccccccccccc------cccccccccc
Confidence            3458999999999999999988876  444   6678899999999999999999999999998      7799999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCC----------------------------------------------ccCCCCCCC
Q 004286           85 STPLHIAAGLGNVSMCKCIATADPR----------------------------------------------LIGERNHEN  118 (763)
Q Consensus        85 ~TpLh~Aa~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~~~~~g  118 (763)
                      .||||+|+..|+.++++.|++....                                              .++.+|.+|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            9999999999999999999765421                                              156678899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHH
Q 004286          119 ETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLL  198 (763)
Q Consensus       119 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A  198 (763)
                      .||||+|+..|+.+++++|++++++.+.    ..+..|.||||+|++.|+. +++++|++ +|++++.+|..|.||||+|
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~----~~~~~g~TpL~~A~~~~~~-~~v~~Ll~-~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNK----PEPTCGRTPLHLAVEAQAA-SVLELLLK-AGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTC----CCTTTCCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccchhcccccccc----cccccccccccccccccHH-HHHHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999998873    4678899999999999999 99999998 5999999999999999999


Q ss_pred             hcCCCCccCCchHHHHHHHHHcCCC
Q 004286          199 ATKPNAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       199 ~~~~~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      +..++       .+++++|+++||+
T Consensus       233 ~~~~~-------~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         233 LLRPN-------PILARLLRAHGAP  250 (255)
T ss_dssp             HTSSC-------HHHHHHHHHTTCC
T ss_pred             HHCCC-------HHHHHHHHHcCCC
Confidence            99986       6999999999997

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=4e-33  Score=286.13  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=145.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhh--ccccccccCCCCCchHHH
Q 004286           12 KGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEK--QQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~~~d~~g~TpLh   89 (763)
                      +||+.++..++.+.+.+.|.+. +++... +.+|+||||+||..|+.++|+.|+.+....  ..++++|.+|.+|+||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~-~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRE-SVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTT-TTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhc-CCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            5788776666667777777663 444322 346999999999999999999987664321  234789999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      +|+..|+.+++++|+++|++ ++.+|.+|.|||++|+..++.++++++...+...  ..++..+..+.++.+.+...+..
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK--GDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH--HTTSCCCTTSCCHHHHHHHSCST
T ss_pred             cccccccccccccccccccc-cccccccccccccchhhhcchhhhhhhhhccccc--ccccccccccchhHHHHHhcccc
Confidence            99999999999999999999 9999999999999999999999999998764311  11226888999999999998765


Q ss_pred             HH---HHHHHHHhc-------cccccccccCCCcHHHHHhcCCC
Q 004286          170 VD---LAFQIIHLY-------EKLVNFVNERGVSPLHLLATKPN  203 (763)
Q Consensus       170 ~~---iv~~LL~~~-------~~~~~~~d~~G~TpLh~A~~~~~  203 (763)
                       +   .+..+.+..       ....+..+..|.||||+++..++
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~  199 (277)
T d2fo1e1         157 -DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN  199 (277)
T ss_dssp             -THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred             -cccccccccccccccccccccccccccccCCCCcccccccccc
Confidence             4   333443321       12345567889999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.4e-32  Score=269.40  Aligned_cols=213  Identities=18%  Similarity=0.164  Sum_probs=185.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH
Q 004286           85 STPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus        85 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      +||||+||..|+.++++.|++.++..++.+|.+|+||||+|+..|+.+++++|+++|++++.  .+..+..|.||+|+|+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL--DDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG--GGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc--cccccccccccccccc
Confidence            58999999999999999999987777999999999999999999999999999999998862  2256788999999999


Q ss_pred             HcCChHHHHHHHHHhccc--cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccccchhhhcc
Q 004286          165 SGYYFVDLAFQIIHLYEK--LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYDQHLFTTIK  242 (763)
Q Consensus       165 ~~g~~~~iv~~LL~~~~~--~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  242 (763)
                      ..+.. ++++.++.. +.  +....+..+.|||+.++..++       .++++.|++.|.+.+.                
T Consensus        79 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~----------------  133 (229)
T d1ixva_          79 SVGNL-EVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASVRI----------------  133 (229)
T ss_dssp             HHTCH-HHHHHHHSS-SSCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCSCC----------------
T ss_pred             ccccc-ccccccccc-cccccccccccccccccccccccch-------hhhhhhhhhhcccccc----------------
Confidence            99999 999998874 54  455578889999999999874       5777777666544321                


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchh
Q 004286          243 KQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCF  322 (763)
Q Consensus       243 ~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~  322 (763)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (229)
T d1ixva_         134 --------------------------------------------------------------------------------  133 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCC
Q 004286          323 EFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGD  402 (763)
Q Consensus       323 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~  402 (763)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (229)
T d1ixva_         134 --------------------------------------------------------------------------------  133 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCcc
Q 004286          403 TDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVA  482 (763)
Q Consensus       403 ~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~  482 (763)
                                                                       .|..|+||||+|+..|+.+++++|++..+.+
T Consensus       134 -------------------------------------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  164 (229)
T d1ixva_         134 -------------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSA  164 (229)
T ss_dssp             -------------------------------------------------CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC
T ss_pred             -------------------------------------------------cCCCCCCccchhhhccccccccccccccccc
Confidence                                                             3446999999999999999999999988888


Q ss_pred             ccccccCCCchhHHHHHcCChHHHHHHHhc-cchhhhhhccccCCCCchhhhHhhc
Q 004286          483 ILDMNSEKKNVMLLAVENRQRHVYQLLLKT-AIIQETVFRKVDDQGNSALHLAATL  537 (763)
Q Consensus       483 ~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~-~~~~~~~~n~~D~~G~TpLH~Aa~~  537 (763)
                      ++.+|.+|+||||+|+++|+.++|++|++. |+    +++.+|.+|+||||+|+..
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga----d~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCCCTTSCCTGGGCSCH
T ss_pred             ccccccccCCchhhhcccccHHHHHHHHHhcCC----CCCCcCCCCCCHHHHHhhH
Confidence            999999999999999999999999999975 66    6899999999999999853

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=268.20  Aligned_cols=269  Identities=20%  Similarity=0.162  Sum_probs=223.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGD-ERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF  122 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpL  122 (763)
                      ++.|+||+|++.|+.++|++|+++|      +++|.++ ..|+||||+|+..|+.+++++|++.+.. .+..+..+.+|.
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G------~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~   76 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCC------CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhh
Confidence            3679999999999999999999998      6677665 5799999999999999999999999998 788888999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccc----------cccCCC
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNF----------VNERGV  192 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~----------~d~~G~  192 (763)
                      +.|+..+..+....+++...+..     ..+..|.|+|+.|+..++. ..+..++.. ..+++.          .+..|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~a~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~  149 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKV-KALKFLYKR-GANVNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-----CBCTTCCBHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCC
T ss_pred             HHHhhcCCccccchhhhhccccc-----ccccCCCchhHHHHHhcch-hhhhhhhhh-cccccccccchhhhhhhcccCc
Confidence            99999999999999999988776     7889999999999999999 999888874 434333          356799


Q ss_pred             cHHHHHhcCCCCccCCchHHHHHHHHH-cCCCCCccccccccccchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhC
Q 004286          193 SPLHLLATKPNAFRSGSHLGLCTGIIY-HCISVDKLQEETSYDQHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNR  271 (763)
Q Consensus       193 TpLh~A~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~  271 (763)
                      ||||+|+.+++       .+++++|++ .|++++..+..              +.++......                 
T Consensus       150 t~L~~A~~~~~-------~~~~~~Ll~~~~~~i~~~~~~--------------~~~~~~~~~~-----------------  191 (285)
T d1wdya_         150 TALMDAAEKGH-------VEVLKILLDEMGADVNACDNM--------------GRNALIHALL-----------------  191 (285)
T ss_dssp             CHHHHHHHHTC-------HHHHHHHHHTSCCCTTCCCTT--------------SCCHHHHHHH-----------------
T ss_pred             hHHHHHHHcCC-------HHHHHHHHhccCCCcccccCC--------------CCcccccccc-----------------
Confidence            99999999985       699999997 58888876643              1111111100                 


Q ss_pred             CCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCCCCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHh
Q 004286          272 GNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQ  351 (763)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~  351 (763)
                                                                                                    ..
T Consensus       192 ------------------------------------------------------------------------------~~  193 (285)
T d1wdya_         192 ------------------------------------------------------------------------------SS  193 (285)
T ss_dssp             ------------------------------------------------------------------------------CS
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             hhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcccccccCCCCCCCCCCCCCCCCccccCccccccccccc
Q 004286          352 KHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIPYAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSR  431 (763)
Q Consensus       352 ~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~  431 (763)
                      ......++++.|++++++.+                                                            
T Consensus       194 ~~~~~~~i~~~Li~~ga~~n------------------------------------------------------------  213 (285)
T d1wdya_         194 DDSDVEAITHLLLDHGADVN------------------------------------------------------------  213 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCSS------------------------------------------------------------
T ss_pred             cchHHHHHHHHHHHCCCCCC------------------------------------------------------------
Confidence            11112368888888854421                                                            


Q ss_pred             cCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHHHHHhCCccccccccCCCchhHHHHHcCChHHHHHHHh
Q 004286          432 NNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLK  511 (763)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~  511 (763)
                                         .+|..|.||||.|++.|+.++|++||+..+.+++.+|.+|+||||+|+++|+.++|++|++
T Consensus       214 -------------------~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         214 -------------------VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -------------------ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                               2566899999999999999999999998888999999999999999999999999999999


Q ss_pred             ccchhhhhhccccC
Q 004286          512 TAIIQETVFRKVDD  525 (763)
Q Consensus       512 ~~~~~~~~~n~~D~  525 (763)
                      +|+    ++|++|.
T Consensus       275 ~GA----d~n~~d~  284 (285)
T d1wdya_         275 RGA----STDCGDL  284 (285)
T ss_dssp             HSS----CSCCSSC
T ss_pred             CCC----CCCcccC
Confidence            999    6888773

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-29  Score=248.24  Aligned_cols=155  Identities=24%  Similarity=0.213  Sum_probs=109.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      +|+||||+||..|+.++++.|++...+  .+++++.+|..|+||||+|+..|+.++++.|++++++ .+..+..|.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~--~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCccCCCCCccceehhccccccccccccccccc-ccccccccccccc
Confidence            588888888888888888887764332  2356777888888888888888888888888888777 7777778888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCC
Q 004286          124 LAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPN  203 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~  203 (763)
                      .|...++.++++.+........ ...+.......++||.+...... ...+.|...........+..|.+||+.|+..+.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGT-LDLEARNYDGLTALHVAVNTECQ-ETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTS-CCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccchhhhhhcccccc-ccccccccccccccccccccccc-hhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            8888888888777776544333 22335566677788888777777 777777664333344455667777777776653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=3.5e-30  Score=266.18  Aligned_cols=164  Identities=23%  Similarity=0.161  Sum_probs=140.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChH
Q 004286           42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETP  121 (763)
Q Consensus        42 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~Tp  121 (763)
                      +.+|.||||.||..|+.++|++||++|      +++|.+|.+|+||||+|+..|+.++|++|++++.+ .+..+..+.||
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~G------advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~  109 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERG------ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIP  109 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHC------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCC------CCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-ccccccccccc
Confidence            456789999999999999999999998      67899999999999999999999999999999988 78888999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhcccc------------------
Q 004286          122 FFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKL------------------  183 (763)
Q Consensus       122 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~------------------  183 (763)
                      |++|+..++.++++.|+++|+..+     ..|..|.+|+++|+..++. +.++.++...+.+                  
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVG-----AVNSEGDTPLDIAEEEAME-ELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCCSHHHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccCcccc-----cccccCccccccccccccc-hhccccccccccccccccccccccccccchh
Confidence            999999999999999999999888     8899999999999999998 8888888754433                  


Q ss_pred             --------ccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          184 --------VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       184 --------~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                              ....+..|.||||+|+..++       .++++.|+++|++++
T Consensus       184 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~-------~~~~~~Ll~~g~din  226 (291)
T d1s70b_         184 WLNSGHINDVRHAKSGGTALHVAAAKGY-------TEVLKLLIQARYDVN  226 (291)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTC-------HHHHHHHHTTTCCTT
T ss_pred             hhcccccccccccCCCCChhhHHHHcCC-------hhhhcccccceeccc
Confidence                    23456677788888777764       567777766666554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-29  Score=246.55  Aligned_cols=215  Identities=17%  Similarity=0.156  Sum_probs=171.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHh----cCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCC
Q 004286           82 ERGSTPLHIAAGLGNVSMCKCIAT----ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE  157 (763)
Q Consensus        82 ~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~  157 (763)
                      ++|+||||+||..|+.++++.|++    .|++ ++.+|.+|+||||+|+..|+.+++++|+++|++.+     ..+..|.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-----~~~~~~~   74 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-----ALDRHGQ   74 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhccccccccccccccccccc-----ccccccc
Confidence            368999999999999999888875    6777 88899999999999999999999999999999888     7888899


Q ss_pred             hHHHHHHHcCChHHHHHHHHHhccc---cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCccccccccc
Q 004286          158 TILHYAISGYYFVDLAFQIIHLYEK---LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYD  234 (763)
Q Consensus       158 TpLh~A~~~g~~~~iv~~LL~~~~~---~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  234 (763)
                      ++++.|...++. ++++.+......   ..+.....+.+||+.+.....       ....+.|.....+..         
T Consensus        75 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~---------  137 (228)
T d1k1aa_          75 TAAHLACEHRSP-TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADID---------  137 (228)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTT---------
T ss_pred             cccccccccccc-cchhhhhhcccccccccccccccccccccccccccc-------chhhhhhhccccccc---------
Confidence            999999999998 888877764221   234455667778887766542       122222211111000         


Q ss_pred             cchhhhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccccCCccCC
Q 004286          235 QHLFTTIKKQTNYPENYETCLNFIRLLKTMVIVLFNRGNTKKEPTPRDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFF  314 (763)
Q Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (763)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (228)
T d1k1aa_         138 --------------------------------------------------------------------------------  137 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhhHHhhccchhhhhhccchhHHHHHHHHHhhhccHHHHHHHHHhccCCceeccCCCCCCCCCCCCcccccCcc
Q 004286          315 PPNYGTCFEFVKLVSKPMLVILGLGSTKIRKIRDEKQKHTWSVQILDELLRRTSLYEYDYVGGKPLRRPSSQVEEDETIP  394 (763)
Q Consensus       315 p~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~tpL~~a~~~~~~~~~~~  394 (763)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (228)
T d1k1aa_         138 --------------------------------------------------------------------------------  137 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCCCCCCCCCccccCccccccccccccCCCCCccccCCCCCCCCCCCCCCCCcHHHHHHHcChHHHHHH
Q 004286          395 YAIVDGGDTDADLEGDQQPDTSLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEK  474 (763)
Q Consensus       395 ~~~~~g~~~~~~~~g~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~tpLh~Aa~~g~~eiv~~  474 (763)
                                                                             ...+..|.+|||.|+..+..++++.
T Consensus       138 -------------------------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~  162 (228)
T d1k1aa_         138 -------------------------------------------------------AVDIKSGRSPLIHAVENNSLSMVQL  162 (228)
T ss_dssp             -------------------------------------------------------CCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             -------------------------------------------------------cccccchhhHHHHHHHhhhhhhhhh
Confidence                                                                   0123468999999999999999999


Q ss_pred             HHHhCCccccccccCCCchhHHHHHcCChHHHHHHHhccchhhhhhccccCCCCchhhhHhhcCC
Q 004286          475 ILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETVFRKVDDQGNSALHLAATLGD  539 (763)
Q Consensus       475 LL~~~~~~~~~~d~~G~T~LH~A~~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLH~Aa~~g~  539 (763)
                      +++ .+...+.+|..|+||||+|+.+|+.+++++|+++|+    ++|.+|.+|+||||+|++.|+
T Consensus       163 ~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga----d~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         163 LLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHhCCC
Confidence            999 566778889999999999999999999999999998    689999999999999999886

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-29  Score=247.65  Aligned_cols=128  Identities=19%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCCh
Q 004286           83 RGSTPLHIAAGLGNVS----MCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGET  158 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~T  158 (763)
                      +|+||||+|+..|+.+    +++.+...+++ +|.+|.+|+||||+|+..|+.+++++|+++|++++     .+|.+|.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-----~~d~~g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----LRDFRGNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----CCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCcccccccccccccccccccccccccc-----cccccccc
Confidence            3566666666666543    33344444555 66666666666666666666666666666666666     56666666


Q ss_pred             HHHHHHHcCChHHHHHHHHHhccc------cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCC
Q 004286          159 ILHYAISGYYFVDLAFQIIHLYEK------LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD  225 (763)
Q Consensus       159 pLh~A~~~g~~~~iv~~LL~~~~~------~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~  225 (763)
                      |||+|+.+++. ++++.|++. +.      ..+.....|.||||.|+..++       .+++++|++.|+.++
T Consensus        75 ~l~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~~~~~~~~  138 (221)
T d1iknd_          75 PLHLACEQGCL-ASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGY-------LGIVELLVSLGADVN  138 (221)
T ss_dssp             HHHHHHHHTCH-HHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTC-------HHHHHHHHHHTCCTT
T ss_pred             ccccccccccc-cccchhhhh-cccccccccccccccccchhhhHHhhcCC-------hhheeeecccCcccc
Confidence            66666666666 666666653 21      233344556777777777663       466666655554443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.4e-27  Score=233.55  Aligned_cols=148  Identities=22%  Similarity=0.238  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHhhhhcccccccc-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHH
Q 004286           58 EEIVEDLVRIIHEKQQLKVLKI-GDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC  136 (763)
Q Consensus        58 ~~~v~~Ll~~g~~~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~  136 (763)
                      .|+|++|+++|      ++++. .|.+|.||||+||+.|+.+++++|++.|++ ++.++..+.++++.++..++......
T Consensus         2 ~~~v~~Ll~~g------~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQG------AELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCC------CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-cccccccccccccccccccccccccc
Confidence            58999999999      55776 488999999999999999999999999998 89999999999999999999888777


Q ss_pred             HHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHH
Q 004286          137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTG  216 (763)
Q Consensus       137 Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~  216 (763)
                      ..........    .....|.++.+.+...... ...+.|.. .+++++..+..|.|||++++..+.       .++++.
T Consensus        75 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~-------~~~~~~  141 (209)
T d1ot8a_          75 LLRNRATNLN----ARMHDGTTPLILAARLAIE-GMVEDLIT-ADADINAADNSGKTALHWAAAVNN-------TEAVNI  141 (209)
T ss_dssp             HHTCTTCCTT----CCCTTCCCHHHHHHHTTCT-THHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTC-------HHHHHH
T ss_pred             cccccccccc----cccccccccccccccccch-hhhhhhhh-hcccccccCCCCCCcchhhcccCc-------ceeeee
Confidence            7765544331    5666788999999999888 88888887 588999999999999999999874       466666


Q ss_pred             HHHcCCCCC
Q 004286          217 IIYHCISVD  225 (763)
Q Consensus       217 Ll~~ga~~~  225 (763)
                      +++++.+++
T Consensus       142 l~~~~~~~~  150 (209)
T d1ot8a_         142 LLMHHANRD  150 (209)
T ss_dssp             HHHTTCCTT
T ss_pred             ecccccccc
Confidence            666655443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=6.6e-30  Score=270.16  Aligned_cols=167  Identities=13%  Similarity=0.031  Sum_probs=132.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhhhcc-----ccccccCCCCCchHHHHHHHcCCHHHHHH---HHhcCCCccCCCCC
Q 004286           45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQ-----LKVLKIGDERGSTPLHIAAGLGNVSMCKC---IATADPRLIGERNH  116 (763)
Q Consensus        45 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~-----~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~  116 (763)
                      ..++++.+...++.++.+.|...+.+.+.     ..+++.++..|.||||+||+.|+.+++++   |++.|++ ++.+|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~  124 (346)
T d2ajaa1          46 EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQA  124 (346)
T ss_dssp             HHHHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CH
T ss_pred             hHHHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCC
Confidence            34555555556667788888777654321     23456778899999999999999877665   7888988 999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccC--CCCChHHHHHHHcCChHHHHHHHHHhcccc---ccccccCC
Q 004286          117 ENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRR--KNGETILHYAISGYYFVDLAFQIIHLYEKL---VNFVNERG  191 (763)
Q Consensus       117 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d--~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~---~~~~d~~G  191 (763)
                      +|+||||+||+.||.++|++|+++|++++     ..+  .+|.||||+|+.+|+. +++++|++. |++   .+..+.+|
T Consensus       125 ~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-----~~~~~~~g~t~L~~Aa~~g~~-~iv~~Ll~~-~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         125 ENYQAFRLAAENGHLHVLNRLCELAPTEI-----MAMIQAENYHAFRLAAENGHL-HVLNRLCEL-APTEATAMIQAENY  197 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTH-----HHHHSHHHHHHHHHHHHTTCH-HHHHHHHHS-CGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCcc-----ccccccCCCChhHHHHHHhhH-HHHHHHHHc-CCcccccccccCCC
Confidence            99999999999999999999999999887     554  4699999999999999 999999995 544   34456778


Q ss_pred             CcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          192 VSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       192 ~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      .||+|.|+.+|+       .+++++|+++|++++.
T Consensus       198 ~t~l~~A~~~g~-------~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         198 YAFRWAAVGRGH-------HNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHSTTCC-------HHHHHHHTTSHHHHHH
T ss_pred             cchhhHHhhcCH-------HHHHHHHHhCCCCcch
Confidence            889999999884       7999999999987764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-28  Score=242.44  Aligned_cols=194  Identities=25%  Similarity=0.222  Sum_probs=170.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccC--CCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKD--DRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPL   88 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~--~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpL   88 (763)
                      .+|||+|+..|+.+.+..++...  .++++|..|.+|+||||+||..|+.+++++|+++|      ++++.+|..|.|||
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g------~d~~~~d~~g~t~l   76 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG------CDPELRDFRGNTPL   76 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC------CCSCCCCTTCCCHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccc------cccccccccccccc
Confidence            57899999999976655544321  26789999999999999999999999999999988      77999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCC-----ccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHH
Q 004286           89 HIAAGLGNVSMCKCIATADPR-----LIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA  163 (763)
Q Consensus        89 h~Aa~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A  163 (763)
                      |+|+..|+.++++.|++.+..     ........|.||||.|+..++.+++++|++.|+.++.    ..+.+|.||||+|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~----~~~~~G~T~L~~A  152 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA----QEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC----CCTTTCCCHHHHH
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccc----ccccCCCCccccc
Confidence            999999999999999987643     2444556789999999999999999999999998872    4557899999999


Q ss_pred             HHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCC
Q 004286          164 ISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCIS  223 (763)
Q Consensus       164 ~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~  223 (763)
                      ++.|+. +++++|++ +|+|++.+|.+|+||||+|+..++       .+++++|++.+.+
T Consensus       153 ~~~g~~-~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~-------~~~~~~l~~~~~~  203 (221)
T d1iknd_         153 VDLQNP-DLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPS-------TRIQQQLGQLTLE  203 (221)
T ss_dssp             HHTTCH-HHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSC-------HHHHHHHHTTSCG
T ss_pred             cccccH-HHHHHHHh-cCCcccccCCCCCCHHHHHHHCCC-------HHHHHHHHHcCCc
Confidence            999999 99999998 699999999999999999999986       6999999998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.9e-27  Score=229.63  Aligned_cols=181  Identities=18%  Similarity=0.241  Sum_probs=163.8

Q ss_pred             HHHHHHHccCCCccccc-cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHH
Q 004286           24 NEVVENYGKDDRIHEAR-ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC  102 (763)
Q Consensus        24 ~~v~~lL~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~  102 (763)
                      +.|+.|++.  |++++. .|.+|+||||+||..|+.+++++|++.|      ++++.++..+.++++.++..++......
T Consensus         3 ~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g------~~~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           3 QVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAG------ADANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc------cccccccccccccccccccccccccccc
Confidence            556777776  899986 5899999999999999999999999998      6689999999999999999999998888


Q ss_pred             HHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccc
Q 004286          103 IATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEK  182 (763)
Q Consensus       103 Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~  182 (763)
                      ...............|.++.+.+.........+.|.+.+++++     .++..|.||||+|+..+.. ++++.+++. +.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-----~~~~~~~t~l~~~~~~~~~-~~~~~l~~~-~~  147 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-----AADNSGKTALHWAAAVNNT-EAVNILLMH-HA  147 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-----CBCTTSCBHHHHHHHTTCH-HHHHHHHHT-TC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhccccc-----ccCCCCCCcchhhcccCcc-eeeeeeccc-cc
Confidence            8887766566677789999999999999999999999999998     8999999999999999999 999999995 88


Q ss_pred             cccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHHcCCCCCc
Q 004286          183 LVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDK  226 (763)
Q Consensus       183 ~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  226 (763)
                      +++..|.+|.||||+|+..|+       .++++.|+++|+|++.
T Consensus       148 ~~~~~d~~g~TpL~~A~~~g~-------~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         148 NRDAQDDKDETPLFLAAREGS-------YEASKALLDNFANREI  184 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTC
T ss_pred             cccccccccccccchhccccH-------HHHHHHHHHCCCCCCC
Confidence            999999999999999999985       6999999999887763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.7e-27  Score=217.28  Aligned_cols=154  Identities=18%  Similarity=0.154  Sum_probs=138.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      +|||+||..|+.++|+.|+++|      ++++.+|.+|+||||+|+ .|+.+++++|++++++ ++.++..|.+||+.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g------~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCcCccCCcccccccccc-cccccccccccccccc-cccccccCcccccccc
Confidence            7899999999999999999987      678889999999999876 7899999999999988 8889999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCcc
Q 004286          127 RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFR  206 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~  206 (763)
                      ..++.++++.|++.+.+++     ..|..|.+|||+|+..++. +++++|+++.+.+++.+|.+|.||||+|+..++   
T Consensus        75 ~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~---  145 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADVN-----IEDNEGNLPLHLAAKEGHL-RVVEFLVKHTASNVGHRNHKGDTACDLARLYGR---  145 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC---
T ss_pred             ccccccccccccccccccc-----ccccccccccccccccccc-cccccccccccccccccCCCCCCHHHHHHHcCC---
Confidence            9999999999999998888     8889999999999999999 999999997666889999999999999999885   


Q ss_pred             CCchHHHHHHHHHcC
Q 004286          207 SGSHLGLCTGIIYHC  221 (763)
Q Consensus       207 ~~~~~~iv~~Ll~~g  221 (763)
                          .+++++|+++|
T Consensus       146 ----~~iv~~Ll~~G  156 (156)
T d1ihba_         146 ----NEVVSLMQANG  156 (156)
T ss_dssp             ----HHHHHHHHHTC
T ss_pred             ----HHHHHHHHhcC
Confidence                69999999887

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-26  Score=211.85  Aligned_cols=153  Identities=23%  Similarity=0.281  Sum_probs=142.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      +++|+.||..|+.+.|+.+|.+. +.+++..|..|+||||+|+ .|+.+++++|++++      .+++..+..|.+||+.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~------~~~~~~~~~~~~~l~~   74 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQG------ASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-cccccccccccccc------cccccccccccccccc
Confidence            56799999999999999999875 6889999999999999987 58999999999987      6688899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChH
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFV  170 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~  170 (763)
                      ++..++.++++.+++++++ ++.+|..|+||||+|++.|+.+++++|+ .|++++     .+|.+|+||||+|++.|+. 
T Consensus        75 ~~~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-----~~d~~G~TpL~~A~~~g~~-  146 (156)
T d1bd8a_          75 AARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-----RRDARGLTPLELALQRGAQ-  146 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-----CCCTTSCCHHHHHHHSCCH-
T ss_pred             ccccccccccccccccccc-cccccCCCCeeecccccccccccccccc-cccccc-----ccCCCCCCHHHHHHHcCCH-
Confidence            9999999999999999998 8999999999999999999999999887 688888     8999999999999999999 


Q ss_pred             HHHHHHHHh
Q 004286          171 DLAFQIIHL  179 (763)
Q Consensus       171 ~iv~~LL~~  179 (763)
                      +++++|+++
T Consensus       147 ~iv~~Ll~h  155 (156)
T d1bd8a_         147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999974

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.2e-26  Score=210.21  Aligned_cols=152  Identities=20%  Similarity=0.200  Sum_probs=141.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      +.||.||..|+.++|+.|++.+     ..+++.+|..|+||||+|+ .|+.++++.|++++.+ ++..+..|.+|++.|+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-----~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-----CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-----CCCCCccCCCCCccccccc-cccccccccccccccc-cccccccccccccccc
Confidence            4699999999999999999874     2789999999999999987 4899999999999998 8999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCcc
Q 004286          127 RHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFR  206 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~  206 (763)
                      ..++.+++++++++|++++     .+|.+|+||||+|++.|+. +++++|++  +++++.+|.+|+||||+|+..|+   
T Consensus        77 ~~~~~~~~~~~l~~~~~~n-----~~~~~~~t~L~~A~~~~~~-~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~---  145 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVN-----VPDGTGALPIHLAVQEGHT-AVVSFLAA--ESDLHRRDARGLTPLELALQRGA---  145 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSC-----CCCTTSCCHHHHHHHHTCH-HHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCC---
T ss_pred             ccccccccccccccccccc-----cccCCCCeeeccccccccc-cccccccc--cccccccCCCCCCHHHHHHHcCC---
Confidence            9999999999999999998     8999999999999999999 99998874  78999999999999999999995   


Q ss_pred             CCchHHHHHHHHHc
Q 004286          207 SGSHLGLCTGIIYH  220 (763)
Q Consensus       207 ~~~~~~iv~~Ll~~  220 (763)
                          .+++++|++|
T Consensus       146 ----~~iv~~Ll~h  155 (156)
T d1bd8a_         146 ----QDLVDILQGH  155 (156)
T ss_dssp             ----HHHHHHHHTT
T ss_pred             ----HHHHHHHHhh
Confidence                7999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=7.2e-28  Score=254.37  Aligned_cols=140  Identities=14%  Similarity=0.137  Sum_probs=116.1

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHH---HHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004286           38 EARITRSGGTALHIAVSDGQEEIVED---LVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER  114 (763)
Q Consensus        38 ~~~~d~~g~TpLh~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  114 (763)
                      .+.++..|.||||+||+.||.+++++   |++.|      ++++.+|.+|+||||+||+.||.++|++|+++|++ ++..
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~------~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~  155 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMA  155 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC------CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccc
Confidence            34567889999999999999887765   67776      77999999999999999999999999999999998 7765


Q ss_pred             C--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccc
Q 004286          115 N--HENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVN  188 (763)
Q Consensus       115 ~--~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d  188 (763)
                      +  .+|+||||+||..||.++|++|++.|++..  +.+..+.+|.||+|.|+.+|+. +++++|++ .|++++..+
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~~~~~t~l~~A~~~g~~-~iv~~Ll~-~ga~~~~~~  227 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFRWAAVGRGHH-NVINFLLD-CPVMLAYAE  227 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHHHHHSTTCCH-HHHHHHTT-SHHHHHHHH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCccc--ccccccCCCcchhhHHhhcCHH-HHHHHHHh-CCCCcchHH
Confidence            5  469999999999999999999999998653  1224556678899999999999 99999998 487766544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-25  Score=205.92  Aligned_cols=153  Identities=20%  Similarity=0.199  Sum_probs=144.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHH
Q 004286           11 KKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHI   90 (763)
Q Consensus        11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~   90 (763)
                      +++||.||..|+.+.|+.|++.  |++++.+|..|+||||+|+ .|+.+++++|+++|      ++++.++..|.+||+.
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~------a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG------ANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-cccccccccccccc------cccccccccCcccccc
Confidence            5899999999999999999998  8999999999999999886 79999999999988      6789999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCA-SVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        91 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      ++..++.++++.|++.+.+ ++..+..|.+|||+|+..++.+++++|+++|+ +.+     .+|.+|+||||+|++.++.
T Consensus        73 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-----~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-----HRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-----CCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-----ccCCCCCCHHHHHHHcCCH
Confidence            9999999999999999998 89999999999999999999999999999987 555     8999999999999999999


Q ss_pred             HHHHHHHHHh
Q 004286          170 VDLAFQIIHL  179 (763)
Q Consensus       170 ~~iv~~LL~~  179 (763)
                       +++++|+++
T Consensus       147 -~iv~~Ll~~  155 (156)
T d1ihba_         147 -EVVSLMQAN  155 (156)
T ss_dssp             -HHHHHHHHT
T ss_pred             -HHHHHHHhc
Confidence             999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.5e-25  Score=204.76  Aligned_cols=150  Identities=24%  Similarity=0.265  Sum_probs=132.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA  125 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A  125 (763)
                      .||||.||+.|+.++|++||++|      ++++ .|..|+||||+|+..++.++++.++..... ....+..+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g------a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG------APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT------CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC------CCcc-cccCCCcccccccccccccccccccccccc-ccccccccccccccc
Confidence            48999999999999999999988      4444 588899999999999999999999988877 667777888999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCc
Q 004286          126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAF  205 (763)
Q Consensus       126 ~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~  205 (763)
                      +...+.+++++++.+|++.+     .+|.+|.||||+|+..|+. +++++|++ +|++++.+|.+|.||||+|+.+|+  
T Consensus        75 ~~~~~~~~~~~l~~~~~~~~-----~~~~~g~T~L~~A~~~g~~-~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~--  145 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADVN-----AKDMLKMTALHWATEHNHQ-EVVELLIK-YGADVHTQSKFCKTAFDISIDNGN--  145 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC--
T ss_pred             cccccceeeecccccCCccc-----cccccCchHHHhhhhcchh-heeeeccc-cccCCcccCCCCCCHHHHHHHcCC--
Confidence            99999999999999998888     8899999999999999999 99999998 589999999999999999999985  


Q ss_pred             cCCchHHHHHHH
Q 004286          206 RSGSHLGLCTGI  217 (763)
Q Consensus       206 ~~~~~~~iv~~L  217 (763)
                           .+++++|
T Consensus       146 -----~eiv~lL  152 (153)
T d1awcb_         146 -----EDLAEIL  152 (153)
T ss_dssp             -----HHHHHHH
T ss_pred             -----HHHHHhC
Confidence                 6888876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.8e-24  Score=199.83  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHH
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLH   89 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh   89 (763)
                      .++||+.||..|+.+.|+.||..  +++++ .|..|+||||+|+..++.++++.++...      ......+..+.++++
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~--ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG------VSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT------CCTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc--CCCcc-cccCCCcccccccccccccccccccccc------ccccccccccccccc
Confidence            46999999999999999999998  77766 6999999999999999999999999875      445667788899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh
Q 004286           90 IAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF  169 (763)
Q Consensus        90 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~  169 (763)
                      .++...+.++++.+..++++ .+.+|.+|.||||+|+..|+.+++++|+++|++++     .+|.+|.||||+|+.+|+.
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-----~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-----TQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCCc-----ccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999998 88999999999999999999999999999999999     8999999999999999999


Q ss_pred             HHHHHHH
Q 004286          170 VDLAFQI  176 (763)
Q Consensus       170 ~~iv~~L  176 (763)
                       |++++|
T Consensus       147 -eiv~lL  152 (153)
T d1awcb_         147 -DLAEIL  152 (153)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHhC
Confidence             999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.7e-25  Score=226.27  Aligned_cols=91  Identities=10%  Similarity=0.030  Sum_probs=72.2

Q ss_pred             cCCCccCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCCh--HHHHHHHHHhccc
Q 004286          106 ADPRLIGER-NHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYF--VDLAFQIIHLYEK  182 (763)
Q Consensus       106 ~~~~~~~~~-~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~--~~iv~~LL~~~~~  182 (763)
                      .+.+ +|.. |.+|+||||+||..|+.++|++|+++|++++     .+|..|+||||.||..++.  .+.+..|++....
T Consensus        95 ~~~d-vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-----~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~  168 (301)
T d1sw6a_          95 TQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-----YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  168 (301)
T ss_dssp             SCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             cCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----cCCcccccHHHHhhhcccchhhhhHHHHHHHHhh
Confidence            3445 6655 8899999999999999999999999999998     8999999999999987642  0233344443445


Q ss_pred             cccccccCCCcHHHHHhcCC
Q 004286          183 LVNFVNERGVSPLHLLATKP  202 (763)
Q Consensus       183 ~~~~~d~~G~TpLh~A~~~~  202 (763)
                      .++..|..|+||||+++..+
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~  188 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITS  188 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHh
Confidence            67888999999999998754

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-24  Score=190.71  Aligned_cols=121  Identities=20%  Similarity=0.192  Sum_probs=112.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCC-hHH
Q 004286           44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENE-TPF  122 (763)
Q Consensus        44 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~-TpL  122 (763)
                      .+.++||+||..|+.++|++|+++|      ++++.+|.+|.||||+|+ .|+.+++++|+++|++ ++.++..|. |||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g------ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L   73 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG------ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV   73 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT------CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC------Cccccccccccccccccc-cccccccccccccccc-ccccccccccccc
Confidence            3568999999999999999999988      678999999999999775 7999999999999998 898888776 699


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHH
Q 004286          123 FLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIH  178 (763)
Q Consensus       123 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~  178 (763)
                      |+|++.|+.+++++|+++|++++     .+|.+|+||||+|+++|+. |++++|++
T Consensus        74 ~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~G~T~l~~A~~~g~~-~~v~~Lls  123 (125)
T d1bi7b_          74 HDAAREGFLDTLVVLHRAGARLD-----VRDAWGRLPVDLAEELGHR-DVARYLRA  123 (125)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSS-----CCCTTCCCHHHHHHHHTCH-HHHHHHSS
T ss_pred             ccccccccccccccccccccccc-----cccCCCCCHHHHHHHcCCH-HHHHHHHh
Confidence            99999999999999999999998     8999999999999999999 99999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.3e-24  Score=220.29  Aligned_cols=153  Identities=18%  Similarity=0.107  Sum_probs=123.6

Q ss_pred             Ccccccc-CCCCChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCH-------HHHHHHHhc
Q 004286           35 RIHEARI-TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNV-------SMCKCIATA  106 (763)
Q Consensus        35 ~~~~~~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~-------~~v~~Ll~~  106 (763)
                      +.++|.. |.+|+||||+||..|+.++|++|+++|      ++++.+|..|+||||.|+..++.       ++++++.. 
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-  168 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-  168 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh-
Confidence            5667754 899999999999999999999999998      77999999999999999987752       34444432 


Q ss_pred             CCCccCCCCCCCChHHHHHHHcCC----HH--------HHHHHHHcCCCCCC----------------------------
Q 004286          107 DPRLIGERNHENETPFFLAARHGH----KD--------AFLCLHYLCASVDD----------------------------  146 (763)
Q Consensus       107 ~~~~~~~~~~~g~TpLh~A~~~g~----~~--------~v~~Ll~~ga~~~~----------------------------  146 (763)
                         .++.+|..|+||||+++..+.    ..        ++.++++.+.....                            
T Consensus       169 ---~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
T d1sw6a_         169 ---CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK  245 (301)
T ss_dssp             ---GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred             ---hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhH
Confidence               367788999999999987554    22        33445554443210                            


Q ss_pred             ----CCccccCCCCChHHHHHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHh
Q 004286          147 ----GYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA  199 (763)
Q Consensus       147 ----~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~  199 (763)
                          ..+|.+|.+|+||||+|+++|+. +++++|++ .|++++.+|+.|.|||++|+
T Consensus       246 ~~~~~~in~~D~~G~TpLh~A~~~g~~-~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         246 WIIANMLNAQDSNGDTCLNIAARLGNI-SIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHHHCCH-HHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHhcCccCCCCCCCCHHHHHHHcCCH-HHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence                01458899999999999999999 99999999 59999999999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.8e-24  Score=189.89  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=67.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH
Q 004286           85 STPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus        85 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      .|||++|++.|+.++|+.|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-----~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-----APDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-----CCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceee-----ecccccccchhhhh
Confidence            3566666666666666666666665 56666666666666666666666666666666665     56666666666666


Q ss_pred             HcCChHHHHHHHHHhccccccccccCCCcHHHHHh
Q 004286          165 SGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLA  199 (763)
Q Consensus       165 ~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~  199 (763)
                      .+|+. +++++|++ .|++++.+|.+|.||||+|.
T Consensus        77 ~~~~~-~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHV-SCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCC-HHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             hcCch-hhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            66666 66666666 36666666666666666653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-23  Score=183.15  Aligned_cols=121  Identities=14%  Similarity=0.081  Sum_probs=112.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCC-hHHH
Q 004286           83 RGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGE-TILH  161 (763)
Q Consensus        83 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~-TpLh  161 (763)
                      .+.++||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+ .|+.+++++|+++|++++     .+|..|. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-----~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-----CADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-----CCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccccc-----cccccccccccc
Confidence            356899999999999999999999998 9999999999999775 799999999999999998     7888776 6999


Q ss_pred             HHHHcCChHHHHHHHHHhccccccccccCCCcHHHHHhcCCCCccCCchHHHHHHHHH
Q 004286          162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGIIY  219 (763)
Q Consensus       162 ~A~~~g~~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~~~~iv~~Ll~  219 (763)
                      +|++.|+. +++++|++. |++++.+|.+|+||||+|+++|+       .+++++|++
T Consensus        75 ~A~~~g~~-~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~-------~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFL-DTLVVLHRA-GARLDVRDAWGRLPVDLAEELGH-------RDVARYLRA  123 (125)
T ss_dssp             HHHHHTCH-HHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTC-------HHHHHHHSS
T ss_pred             cccccccc-ccccccccc-ccccccccCCCCCHHHHHHHcCC-------HHHHHHHHh
Confidence            99999999 999999995 99999999999999999999985       799999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.2e-23  Score=182.81  Aligned_cols=107  Identities=22%  Similarity=0.251  Sum_probs=103.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHH
Q 004286           46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLA  125 (763)
Q Consensus        46 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A  125 (763)
                      .|||++|++.|+.++|++|+++|      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g------~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT------CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh------hccccccccccccccccccccccccccccccccce-eeecccccccchhhh
Confidence            59999999999999999999988      77999999999999999999999999999999999 999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHH
Q 004286          126 ARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAI  164 (763)
Q Consensus       126 ~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~  164 (763)
                      +.+|+.+++++|+++|++++     .+|.+|.||||+|.
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~~-----~~d~~G~t~l~~a~  109 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADKT-----VKGPDGLTALEATD  109 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCSS-----SSSSSTCCCCCTCS
T ss_pred             hhcCchhhhhhhhcccccce-----eeCCCCCCHHHHHh
Confidence            99999999999999999998     89999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.8e-23  Score=182.65  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=106.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAA  126 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~  126 (763)
                      ++||.||..|+.++|+.|+++|      ++++.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g------~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV------DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT------SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC------CCccccccccccccccccccccccccccccccccc-cccccccCcccccccc
Confidence            6899999999999999999988      67899999999999999999999999999999988 8999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCccccC-CCCChHHHHH--HHcCChHHHHHHHHHh
Q 004286          127 RHGHKDAFLCLHYLCASVDDGYNYSRR-KNGETILHYA--ISGYYFVDLAFQIIHL  179 (763)
Q Consensus       127 ~~g~~~~v~~Ll~~ga~~~~~~~~~~d-~~G~TpLh~A--~~~g~~~~iv~~LL~~  179 (763)
                      .+|+.+++++|+++|++++     ..+ ..|+||++++  +.+|+. +++++|++.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~-----~~~~~~~~~~~~~~~a~~~g~~-eiv~~L~~~  125 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVF-----AMTYSDMQTAADKCEEMEEGYT-QCSQFLYGV  125 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-----CCCSSSCCCHHHHCCSSSTTCC-CHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCcc-----cccCCCCCCHHHHHHHHHcChH-HHHHHHHhH
Confidence            9999999999999999988     554 4578877655  577889 999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-21  Score=179.01  Aligned_cols=125  Identities=23%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHccCCCcccccc------CCCCChHHHHHHHc---CCHHHHHHHHHHhhhhccccccccC
Q 004286           10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARI------TRSGGTALHIAVSD---GQEEIVEDLVRIIHEKQQLKVLKIG   80 (763)
Q Consensus        10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~------d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~   80 (763)
                      .-..|+.|+..++...+.+++.+  +.+++..      +..|+||||+|+..   |+.++|++|+++|      ++++.+
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g------adin~~   77 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS------GNLDKQ   77 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC------SCTTCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHc--CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC------CChhhh
Confidence            33456666666666666666655  3333322      45566666666653   4556666666655      445666


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 004286           81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCAS  143 (763)
Q Consensus        81 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  143 (763)
                      |.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|++.++.
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhhhccccccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            66666666666666666666666666665 566666666666666666666666666665543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.7e-22  Score=175.42  Aligned_cols=121  Identities=15%  Similarity=0.011  Sum_probs=110.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHH
Q 004286           86 TPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS  165 (763)
Q Consensus        86 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~  165 (763)
                      ++||.||..|+.++|+.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++++     .+|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-----~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-----CCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccccc-----cccccCcccccccch
Confidence            789999999999999999999998 99999999999999999999999999999999998     899999999999999


Q ss_pred             cCChHHHHHHHHHhcccccccccc-CCCcHHHHHh--cCCCCccCCchHHHHHHHHHcC
Q 004286          166 GYYFVDLAFQIIHLYEKLVNFVNE-RGVSPLHLLA--TKPNAFRSGSHLGLCTGIIYHC  221 (763)
Q Consensus       166 ~g~~~~iv~~LL~~~~~~~~~~d~-~G~TpLh~A~--~~~~~~~~~~~~~iv~~Ll~~g  221 (763)
                      +|+. +++++|++ .|++++..+. .|.||++++.  +.|       +.+++++|+..+
T Consensus        77 ~g~~-~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g-------~~eiv~~L~~~~  126 (130)
T d1ycsb1          77 CNNV-QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEG-------YTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCH-HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTT-------CCCHHHHHHHHH
T ss_pred             hhHH-HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcC-------hHHHHHHHHhHH
Confidence            9999 99999999 5999998775 5899988775  444       469999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4e-21  Score=176.04  Aligned_cols=126  Identities=15%  Similarity=0.061  Sum_probs=113.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhhccccccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCccCCCCCCCChHHH
Q 004286           47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGL---GNVSMCKCIATADPRLIGERNHENETPFF  123 (763)
Q Consensus        47 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~TpLh  123 (763)
                      ..|+.|++.++...+..++..|.+.+........+..|+||||+|++.   |+.+++++|+++|++ ++.+|.+|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            345678899999999999998866555555555688899999999975   678999999999998 9999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCccccCCCCChHHHHHHHcCChHHHHHHHHHh
Q 004286          124 LAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHL  179 (763)
Q Consensus       124 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~d~~G~TpLh~A~~~g~~~~iv~~LL~~  179 (763)
                      +||..|+.+++++|+++|++++     .+|.+|+||||+|++.|+. +++++|++.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~-----~~d~~g~tpL~~A~~~~~~-~i~~~L~~~  136 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIE-----IANESGETPLDIAKRLKHE-HCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCH-HHHHHHHHH
T ss_pred             cccccccccccccccccCcccc-----ccCCCCCCHHHHHHHcCCH-HHHHHHHHh
Confidence            9999999999999999999999     8999999999999999999 999999985