Citrus Sinensis ID: 004334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760
Protein Sequence
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHcccHHHHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHcccccccccccHHHcHHEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccEEEEccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccEccccccccccEEEEEEEEccccccccccccccccccEEEEEEEccccEEEEccccccccccccEEEEccccEEEEccccccccccEccccccccccEEccccccEEEEEcccccEEEEEccccccccccHHHccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHccccccEEEcEEEEccccccEEEEEEccccEcccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mascscssslalpelrflspkaasRYHLSLSKQSLYRSFlyknyprcnlgrrirvaagkqdgsvvveekrepefikglndfevngngsasrsdsvgsvnggvngyaNGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDawfkksgqekvevsvapggrwsrfktYSTIQRTLEIWGFVLTFVFRAWLNnqkfsyrggmtEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSelqdqvppfpsetAVSIVEEelgaplddvferfdvepiaaaSLGQVHRARLKGEEVVVKVqrpglkdlfdiDLKNLRVIAEYLQkidpksdgakrdWVAIYDECASVLYQEAANAELFasnfkdmdyvkvptifweyttpqiltmeyvpgikinriQSLDELGVDRKRLGRYAVESYLEQILShgffhadphpgniavddvnggrlifydfgmmgsispnIREGLLEAFYGIYEKDADKVLQAMVQMGvlvptgdttaVRRTAQFFLNSFEERLAAQRKEREITtqelgfkkplskEEKIEKKKQRLAAIGEDLLAIaadqpfrfpatFTFVVRAFSVLdgigkgldprfditEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Flexible Loop (DISEMBL)
mascscssslalpeLRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVaagkqdgsvvveekrepefikglndfevngnGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVgqveeeeklnkeierkkkveeigkedawfkksgqekvevsvapggrwsrfkTYSTIQRTLEIWGFVLTFVFRAWLNNqkfsyrggmteekKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEevvvkvqrpglkdlfdidlKNLRVIAEYlqkidpksdgakrDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQrkereittqelgfkkplskeekIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQrleqgdlklrVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKvkkldqreklitgta
Low Complexity Region (SEG)
MascscssslalPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSAsrsdsvgsvnggvngyangsLVKYvngngnggvavevvgqveeeeklnkeierkkkveeigkeDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered region (IsUnstruct)
****************FL****ASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV********I***********************NGGVNGYANGSLVKYVNGNGNGGVAVEVVGQ*************************WF*******VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSEL**********TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE**********************************LAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLD**********
Disordered Region (DISOPRED)
***********LPELRF******************************************************************************************************************************************************VAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTE*********LAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLE*ERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLIT***
Disordered Region (DISEMBL)
*********LALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered Region (DISPRO)
****SCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNK************************KVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVxxxxxxxxxxxxxxxxxxxxxKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFxxxxxxxxxxxxxxxxxxxxxLGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	760	2.2.26 [Sep-21-2011]
P73627	585	Uncharacterized protein s	N/A	no	0.709	0.921	0.434	1e-137
Q55884	567	Uncharacterized protein s	N/A	no	0.632	0.848	0.352	1e-90
Q55680	681	Uncharacterized protein s	N/A	no	0.614	0.685	0.344	3e-75
P73121	566	Uncharacterized protein s	N/A	no	0.569	0.765	0.329	4e-69
Q9MA15	711	Uncharacterized aarF doma	no	no	0.576	0.616	0.322	2e-62
Q94BU1	692	Uncharacterized aarF doma	no	no	0.493	0.541	0.340	1e-58
Q8RWG1	682	Uncharacterized aarF doma	no	no	0.586	0.653	0.316	3e-58
Q7NZD1	508	Probable ubiquinone biosy	yes	no	0.464	0.694	0.370	1e-57
Q63X97	525	Probable ubiquinone biosy	yes	no	0.594	0.860	0.314	4e-56
A3N5V1	525	Probable ubiquinone biosy	yes	no	0.594	0.860	0.314	4e-56

>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/598 (43%), Positives = 383/598 (64%), Gaps = 59/598 (9%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
           RW+R   YS  +R ++IWGFVLT +++ WLN +K+SY GG TEEK   RR+  AKW++E+
Sbjct: 33  RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +L LGPTFIK+GQ FSTR D+   EYV+ELS+LQD+VP F  E A  I+EEELG P+  +
Sbjct: 92  LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           +  FD  P+AAASLGQVH+A+L  GE+VVVKVQRPGLK LF IDL  L+ IA+Y Q   P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210

Query: 352 KSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYTTPQI 405
           K  G  RDW  IY+EC  +L+Q      E  +A+ F  NF+  D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269

Query: 406 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 465
           LT+EY+PGIKI+   +L+  G++RK L +    +YL Q+L+HGFFHADPHPGN+AV    
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328

Query: 466 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 525
            G LIFYDFGMMG I+P+ +  L++  +G+ EK+A++++ ++V +G L  T D   +RR+
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRS 388

Query: 526 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 585
            QF L++F +                   KP         ++Q +  I +DL  IA DQP
Sbjct: 389 VQFLLDNFMD-------------------KPF--------EEQSITKISDDLYEIAYDQP 421

Query: 586 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK----FREAGVEVILKDF 641
           FRFPATFTFV+RAFS L+G+GKGLDP F+   +A+P+A++++     F  AG      + 
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAG------NI 475

Query: 642 RNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVG 701
            +   RQ     N      R  ++ +++ RL++GD+++RVR+ E++R  +R+  +Q    
Sbjct: 476 MDELGRQAVQVGNSALGLPR--RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTN 533

Query: 702 SAVGAGSLVNLATILYLNSIRVPA---ILAYVSCAFFGFQVLFGIIKVKKLDQREKLI 756
             +   +LV  AT+L++N+  + A   +L  +  AF  +++L      K+L++++++ 
Sbjct: 534 YVLFTCALVLSATLLFVNNYFMAAAVVLLMSLVPAFALWRLL------KRLERQDRMF 585

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0095 PE=3 SV=1

 Score =  334 bits (857), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/536 (35%), Positives = 307/536 (57%), Gaps = 55/536 (10%)

Query: 192 FVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRV 251
           F+L   F +W           +T  +   RR   A+WL + +L LGPTFIKIGQ  STR 
Sbjct: 33  FLLFVFFLSW---------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRA 83

Query: 252 DILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHR 311
           DI+  EY++  ++LQD+VPPF S  A++++E+EL   +D++F++F+V P+A+ASLGQVHR
Sbjct: 84  DIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHR 143

Query: 312 ARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECA 368
           A L  GE VVVKVQRPGL  L ++D + L       ++  P  +    K +  AIY E  
Sbjct: 144 AVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFF 203

Query: 369 SVLY------QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL 422
           S+L+       E  NAE F  NF D   V+VP I+W+YTT  +LT+EY+PGIK++  Q+L
Sbjct: 204 SLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQAL 263

Query: 423 DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP 482
           +  G++   + +  + +YL+Q+L  GFF +DPHPGN+AVD  + G LIFYDFG M  +  
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKI 321

Query: 483 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRK 542
             ++ +++ F+ +  KD ++VL+A++ MG++ P GD + ++R   F L++F +       
Sbjct: 322 IAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------- 374

Query: 543 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 602
                       KP+     I+   Q    +GE++ A+   QPFR P   TF++++ S L
Sbjct: 375 ------------KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTL 414

Query: 603 DGIGKGLDPRFDITEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 660
           DGI + LDPR+++   ++P+  ++ + + + +    +L+  +        A   L R + 
Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSR 468

Query: 661 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATIL 716
             + L E   +LE+G+L+   R+ E +R  +++    K++  A   G  +  AT+L
Sbjct: 469 NQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1

 Score =  283 bits (725), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 278/531 (52%), Gaps = 64/531 (12%)

Query: 143 KKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWL 202
           K  +E++G     F +S +   ++ +     + R +    + R + I   +L F+   W 
Sbjct: 34  KSHLEDLGPVSDMFPESWEYHPDLIM----EFYRKRPLQVLGRLINILFPLLRFILGIWW 89

Query: 203 NNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDEL 262
                  RG   ++  V R KA+   L+E +  LGPT+IK+GQ  STR D++   ++DEL
Sbjct: 90  EK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDEL 140

Query: 263 SELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVV 321
           + LQDQ+P FP+E A   +EEELGAP ++++     EPIAAASLGQV++ +LK GE V V
Sbjct: 141 TTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAV 200

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL------YQEA 375
           KVQRP L     +D+  +R ++ + ++        + D VAI DE AS +      YQEA
Sbjct: 201 KVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEA 257

Query: 376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 435
            N E FA  +  +  + VP+I+W+YT  ++LTME+V GIK+  I+++   G+D   L   
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317

Query: 436 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 495
            V+  L Q+L HGFFHADPHPGN+    +  GRL + DFGMM +I P  R GL+EA   +
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHL 375

Query: 496 YEKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFK 554
             +D D + +  V++  L P  D    +    Q F N+    +A           EL FK
Sbjct: 376 VNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK 424

Query: 555 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 614
                            +I + + A+  + PFR PA +  ++R+   L+GI  G+DP F 
Sbjct: 425 -----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFK 467

Query: 615 ITEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 659
           +   A PY  + L      + R +  E++ K+   RW+R      NL R A
Sbjct: 468 VLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1919 PE=3 SV=1

 Score =  263 bits (672), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 248/492 (50%), Gaps = 59/492 (11%)

Query: 172 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 228
             + R + +  + R LE+   +GF LT +       Q   Y+    E+            
Sbjct: 25  ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+E + +LGPTFIK+GQ  STR D++ +++++EL +LQDQ+PPF ++ A  ++EE+LG  
Sbjct: 73  LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132

Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           +D+ +      P+AAASLGQV+RA L  GEEV VKVQRP L+    +DL  +R+ A+   
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYT 401
           +  P + G   D   I DE    L++      E  NAE FA NF     VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250

Query: 402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 461
             ++LT+E++ G K+     +   G+D   + R  V S L Q+L HGFFHADPHPGN+  
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310

Query: 462 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA 521
                GR+ + DFGMM  + P  +E +  +   +  KD   + +  + +G L P  D T 
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368

Query: 522 VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIA 581
           +    +   N F   +         + Q+  FK                  I +D   + 
Sbjct: 369 IIPALE---NVFGSAIGQ-------SVQDFNFK-----------------TITDDFSELM 401

Query: 582 ADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVE 635
            D PFR PA F  ++R+    +G+   LDP F I E+A PY    L      + R   ++
Sbjct: 402 YDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLID 461

Query: 636 VILKDFRNRWDR 647
           V+ K+ + +W R
Sbjct: 462 VLFKNGKFQWQR 473

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/499 (32%), Positives = 251/499 (50%), Gaps = 61/499 (12%)

Query: 178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 237
           + +  ++R+LEI G +  F  +  ++ ++ +    M +    LRR            RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158

Query: 238 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 297
           PTF+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F    
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218

Query: 298 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 355
            EPIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D 
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275

Query: 356 AKRDWVAIYDECASVLY------QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 409
              D + + DE A  +Y      QEA NA  F   + D   V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335

Query: 410 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 468
           +V G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN +A  D   G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392

Query: 469 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF 528
           L F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + 
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452

Query: 529 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 588
           F   F++ L         T  EL FK                  + + L A+    PF  
Sbjct: 453 F---FDDAL-------NYTVSELNFK-----------------TLVDGLGAVFYQYPFNV 485

Query: 589 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY-AMELLK-----FREAGVEVILKDFR 642
           P  +  ++R+ +VL+G+    DP F +   + PY A  LL       R+A +E++ KD +
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGK 545

Query: 643 NRWDRQTRAFYNLFRQADR 661
            RW+R      NL +Q  +
Sbjct: 546 FRWNR----LENLLQQGSK 560

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 226/429 (52%), Gaps = 54/429 (12%)

Query: 207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct: 96  FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
           LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query: 320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------ 373
            VKVQRPG++    +D   LR IA  ++    K+     D  A+ DE A+ L++      
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query: 374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 433
           EA N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L         L 
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323

Query: 434 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 493
              V     Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query: 494 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 553
            +  +D   + +  V +G+L PT + +AV +      + F++  A  R  R I+  +L  
Sbjct: 382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL-- 434

Query: 554 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 613
                           L  +G+ +        FR P  F+ V+R+ +VL+GI  G+ P +
Sbjct: 435 ----------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNY 474

Query: 614 DITEIAKPY 622
            +     P+
Sbjct: 475 KVLGSTYPW 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1

 Score =  227 bits (578), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/508 (31%), Positives = 243/508 (47%), Gaps = 62/508 (12%)

Query: 156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
           F+K   E V   V      SR    S + R +EI W   L      + +   + +  G  
Sbjct: 110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRD 159

Query: 215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
           EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct: 160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query: 275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
           E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct: 216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query: 333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFK 386
             DL   R +A +L     +  G   +   I DE    L +      EA N E F  NFK
Sbjct: 276 YRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query: 387 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 446
           D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct: 334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query: 447 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
            G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct: 394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query: 506 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 565
              ++G L    D + +    +    +   +  A    R +T Q   F K          
Sbjct: 451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK---------- 497

Query: 566 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 625
                         +  D P R P  F+ V+R+    +GI   L P F   E+A PY  +
Sbjct: 498 --------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 543

Query: 626 LL------KFREAGVEVILKDFRNRWDR 647
            L        RE  ++V+ KD   +W R
Sbjct: 544 RLLTDPNPALRERLIQVLFKDGVFQWKR 571

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 49/402 (12%)

Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
           LGP F+K GQ  STR D+L  EY DEL+ LQD+VPPF  + A  +VE  LG  ++++F  
Sbjct: 59  LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118

Query: 296 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
           FD++P+A+AS+ QVH+A L+      G EV VKV RPG+  + + DL  +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178

Query: 350 DPKSDGAK---RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
              +DG +   R+ VA +D+       +  EAANA     NFK  D + VP +F++Y++ 
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236

Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
           ++LT+E++ GI + +I+ L E GVD ++L R+ VE +  Q+  HGFFHAD HPGNI V  
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294

Query: 464 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 523
              GR I  DFG++GS++   +  L   F   + +D  +V  A ++ G  VP  DT A  
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA-- 350

Query: 524 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI-AA 582
                     EE  AA R     T  E  F+KPLS+            + G  LL +   
Sbjct: 351 ----------EELEAAVR-----TVCEPIFEKPLSE-----------ISFGMVLLRLFET 384

Query: 583 DQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 622
            + F        V+   ++L+  G+G+ LDP  D+ + AKP+
Sbjct: 385 SRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain K96243) GN=ubiB PE=3 SV=1

 Score =  220 bits (560), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+L     KG+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
            + +++   +DG +   R+ VA +D+       L +EAAN      NF  +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229

Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
           W+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289

Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
           NI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349

Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
             DT      +A+R   + +F  + ++    Q   R  +T         S+   +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398

Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
            L  + + +L +                      +G+G+ LDP  D+ + AKPY +E   
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434

Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
             + G+    + F+    + ++    L R   +         R    DL  ++  L  +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492

Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
              R+       G AVGAG+++           RV  +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1

 Score =  220 bits (560), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 164/521 (31%), Positives = 265/521 (50%), Gaps = 69/521 (13%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+L     KG+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECAS---VLYQEAANAELFASNFKDMDYVKVPTIF 397
            + +++   +DG +   R+ VA +D+       L +EAAN      NF  +D + VP +F
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229

Query: 398 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 457
           W+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD HPG
Sbjct: 230 WDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289

Query: 458 NIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
           NI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + P
Sbjct: 290 NIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349

Query: 516 TGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQ 568
             DT      +A+R   + +F  + ++    Q   R  +T         S+   +E + Q
Sbjct: 350 --DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEIQPQ 398

Query: 569 RLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
            L  + + +L +                      +G+G+ LDP  D+ + AKPY +E   
Sbjct: 399 -LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LERWM 434

Query: 629 FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER 688
             + G+    + F+    + ++    L R   +         R    DL  ++  L  +R
Sbjct: 435 TEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LVEQR 492

Query: 689 AFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 729
              R+       G AVGAG+++           RV  +LAY
Sbjct: 493 RTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	760
224096282	765	predicted protein [Populus trichocarpa]	0.973	0.967	0.784	0.0
356516279	752	PREDICTED: uncharacterized protein sll17	0.978	0.989	0.785	0.0
356525527	757	PREDICTED: uncharacterized protein sll17	0.961	0.965	0.774	0.0
449516721	761	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.978	0.977	0.770	0.0
449451493	761	PREDICTED: uncharacterized protein sll17	0.978	0.977	0.771	0.0
356512736	756	PREDICTED: uncharacterized protein sll17	0.956	0.961	0.778	0.0
357519623	735	ABC transporter-like protein [Medicago t	0.946	0.978	0.776	0.0
356509050	749	PREDICTED: uncharacterized protein sll17	0.975	0.989	0.781	0.0
224083787	627	predicted protein [Populus trichocarpa]	0.813	0.985	0.894	0.0
297794095	755	hypothetical protein ARALYDRAFT_919821 [	0.977	0.984	0.769	0.0

>gi|224096282|ref|XP_002310598.1| predicted protein [Populus trichocarpa] gi|222853501|gb|EEE91048.1| predicted protein [Populus trichocarpa]

 Score = 1207 bits (3124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/780 (78%), Positives = 675/780 (86%), Gaps = 40/780 (5%)

Query: 6   CSSSLALPELRFLSPKAASRYH----LSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQD 61
            +SSL LPEL FLSPK  +  H    LSLS+ S  +  +     + NL  R  V    ++
Sbjct: 1   MASSLPLPELIFLSPKTRTPKHHHHLLSLSRHSFSKLNVSGKKNKFNLPLRTPVTRAVKE 60

Query: 62  GSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSL----------- 110
            + V+EE RE E +K     E+NGNG+         VNG V  Y NG L           
Sbjct: 61  DTAVIEE-REREILK-----ELNGNGNRR-------VNGSVERYVNGGLVSVEEGESSSN 107

Query: 111 ---VKYVNGNGNGGV-AVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEV 166
              VKYVNGNG   V   E++  VEE+++ +KE  R+K++EEIGKEDAWFK++GQ+++EV
Sbjct: 108 ESLVKYVNGNGAAAVETAEIL--VEEKKEGSKEEGRQKRIEEIGKEDAWFKRAGQQQIEV 165

Query: 167 SVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALA 226
           SVAPGGRWSRFKTYSTIQRTLEIWG VLTF+F+AWLNNQKFSYRGGMTEEKK++RRKALA
Sbjct: 166 SVAPGGRWSRFKTYSTIQRTLEIWGSVLTFIFKAWLNNQKFSYRGGMTEEKKMVRRKALA 225

Query: 227 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELG 286
           KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+LSELQDQVPPFPSETAVSIVEEELG
Sbjct: 226 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELG 285

Query: 287 APLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           AP+ D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYL
Sbjct: 286 APVGDIFDRFDYEPIAAASLGQVHRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYL 345

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEY 400
           QK+DPKSDGAKRDWVAIYDECA+VLYQE      A+NAELFASNFK+M+YVKVP I+WEY
Sbjct: 346 QKVDPKSDGAKRDWVAIYDECANVLYQEIDYTMEASNAELFASNFKEMEYVKVPAIYWEY 405

Query: 401 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 460
           TTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA
Sbjct: 406 TTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 465

Query: 461 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT 520
           VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD DKVL+AM+QMGVLVPTGD T
Sbjct: 466 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDPDKVLEAMIQMGVLVPTGDMT 525

Query: 521 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI 580
           AVRRTA FFLNSFEERLAAQR+E EI T + GFKKPLSK+EKIEKKKQRLAAIGEDLL+I
Sbjct: 526 AVRRTALFFLNSFEERLAAQRREGEIETAQPGFKKPLSKDEKIEKKKQRLAAIGEDLLSI 585

Query: 581 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKD 640
           AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV+LKD
Sbjct: 586 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVLLKD 645

Query: 641 FRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTV 700
           FR RWDRQ+RA YNLFRQADRV+KLA+TIQRLEQGDLKLRVRTLE+ERAFQRVAAVQK V
Sbjct: 646 FRKRWDRQSRAIYNLFRQADRVQKLADTIQRLEQGDLKLRVRTLEAERAFQRVAAVQKIV 705

Query: 701 GSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           GSAV  GSLVNLATILYLNSIRVPAI A + CAFF FQVLFG+IKVKKLDQ+E+LITGTA
Sbjct: 706 GSAVAVGSLVNLATILYLNSIRVPAIAASIFCAFFSFQVLFGLIKVKKLDQQERLITGTA 765

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516279|ref|XP_003526823.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1183 bits (3060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/765 (78%), Positives = 664/765 (86%), Gaps = 21/765 (2%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +S SK      +    +   N+  R       ++ S
Sbjct: 1   MATSSPLPLPELHFLSPQTTPKRRISFSKLP-SSPYSVSRHVTSNVSLRTSRIRATREES 59

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
            + E          LND E   NG  +A+   +  SV G VNG  NGSLVKY   NGNG 
Sbjct: 60  ALAER---------LNDVEWTGNGAAAAAADGNGASVGGYVNGATNGSLVKYGYENGNG- 109

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
           V+ EV+ +VE   KL+++  RKK++EEIGKEDAWFK+SG E+VEV+VAPGGRW+RFKTYS
Sbjct: 110 VSAEVL-EVEASNKLSED-GRKKRLEEIGKEDAWFKQSGNEQVEVAVAPGGRWNRFKTYS 167

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGF  TF+F+AWLNNQKFSY+GGMTEEK+ LRRK LAKWLKE+ILRLGPTFI
Sbjct: 168 TIQRTFEIWGFFATFIFKAWLNNQKFSYKGGMTEEKQTLRRKVLAKWLKENILRLGPTFI 227

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 228 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 287

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRARL G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 288 AAASLGQVHRARLNGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 347

Query: 362 AIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 415
           AIYDECASVLYQE      AANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 348 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 407

Query: 416 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 475
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 408 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 467

Query: 476 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 535
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 468 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 527

Query: 536 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 595
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 528 RLAAQRQEREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 587

Query: 596 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 655
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 588 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 647

Query: 656 FRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 715
           FRQADRV+KLA+ IQRLEQGDLKLRVRTLESERAFQRVAAVQKT+GSAV AGSL+NLAT+
Sbjct: 648 FRQADRVDKLADIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGSAVAAGSLINLATV 707

Query: 716 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITGTA
Sbjct: 708 LYLNSIRVPAIAAYIFCALFGFQVLLGIVKVKKLDERERLITGTA 752

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525527|ref|XP_003531376.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1180 bits (3053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/763 (77%), Positives = 660/763 (86%), Gaps = 32/763 (4%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           E +FL+P+   +   SLS      S    +  R N+  R R+ A  ++G+V         
Sbjct: 11  EFKFLAPQITPKRRRSLSSFCSRHSVSLNS--RYNVALRTRIRAVMEEGAV--------- 59

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNGGVAV 124
            I  +ND + +GNG +AS     GSVNG VNG         ANG LVKYVNGNG   VA 
Sbjct: 60  -IDRVNDVKWSGNGVAASEYGGNGSVNGYVNGVSGVMESEDANGRLVKYVNGNG---VAA 115

Query: 125 EVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTYSTI 183
           EVV    E  K  KE  RKK++EEIGKEDAWFKK +G+  +EV+VAPGGRWSRFKTYS I
Sbjct: 116 EVVEDFAESLK-RKEDGRKKRLEEIGKEDAWFKKQTGEAPIEVAVAPGGRWSRFKTYSMI 174

Query: 184 QRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKI 243
           QRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK+LRRKALAKWLKESILRLGPTFIK+
Sbjct: 175 QRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKILRRKALAKWLKESILRLGPTFIKV 234

Query: 244 GQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA 303
           GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAV+IVEEELG+PL  VF+ F+ EPIAA
Sbjct: 235 GQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVAIVEEELGSPLASVFDHFEYEPIAA 294

Query: 304 ASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 363
           ASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI
Sbjct: 295 ASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 354

Query: 364 YDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN 417
           YDECASVLYQE      AANAELFASNF+++DYVKVPTI W+YTTPQILTMEYVPGIKIN
Sbjct: 355 YDECASVLYQEIDYTKEAANAELFASNFENLDYVKVPTIIWDYTTPQILTMEYVPGIKIN 414

Query: 418 RIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 477
           +IQ+LD LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM
Sbjct: 415 KIQALDRLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 474

Query: 478 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERL 537
           GSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFEERL
Sbjct: 475 GSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFEERL 534

Query: 538 AAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVR 597
           AAQR+ERE+ T ELGFK+PLSKEE++ KKK+RLAAIGEDLLAIAADQPFRFPATFTFVVR
Sbjct: 535 AAQRREREMETAELGFKQPLSKEEQVMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVR 594

Query: 598 AFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFR 657
           AFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKD R RWDRQ++AFYNLFR
Sbjct: 595 AFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDLRKRWDRQSQAFYNLFR 654

Query: 658 QADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 717
           QADRVEKLAE I+RLEQGDLKLRVRTLESERAFQR+A VQ+T+G+A+ AGSL+NLATIL+
Sbjct: 655 QADRVEKLAEIIERLEQGDLKLRVRTLESERAFQRIATVQRTIGNAIAAGSLINLATILF 714

Query: 718 LNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           LNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 715 LNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516721|ref|XP_004165395.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/770 (77%), Positives = 668/770 (86%), Gaps = 26/770 (3%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 410
           KRDWVAIYDECA+VLYQE      AANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 411 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 470
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 471 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 530
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 531 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 590
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+  KK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMXKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 591 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 650
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 651 AFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 710
           AFYNLFRQA+RVEKLAE IQRLEQGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 711 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451493|ref|XP_004143496.1| PREDICTED: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/770 (77%), Positives = 669/770 (86%), Gaps = 26/770 (3%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 410
           KRDWVAIYDECA+VLYQE      AANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 411 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 470
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 471 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 530
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 531 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 590
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+ KKK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 591 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 650
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 651 AFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 710
           AFYNLFRQA+RVEKLAE IQRLEQGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 711 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512736|ref|XP_003525072.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/766 (77%), Positives = 670/766 (87%), Gaps = 39/766 (5%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL+FL+P+   +   SLS+      F  +N  R N+  R R+ A K++G+V         
Sbjct: 11  ELKFLAPQITPKRRRSLSR------FCSQN-SRYNVALRTRIRAFKEEGAV--------- 54

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNG-GVA 123
            I  +ND + +GNG +AS   + GSVNG  NG         ANGSLVKYVN NGNG GVA
Sbjct: 55  -IDRVNDVKWSGNGVAASEYGANGSVNGYANGVSGVRESENANGSLVKYVNDNGNGNGVA 113

Query: 124 VEVVGQVEEEEKLNKEIE--RKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTY 180
            EVV   E+  + +K +E  RKK++EEIGKE+AWFKK +G+  +EV+VAPGGRWSRFKTY
Sbjct: 114 AEVV---EDSAEASKRMEDGRKKRLEEIGKEEAWFKKQTGEAPIEVAVAPGGRWSRFKTY 170

Query: 181 STIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTF 240
           S IQRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK  RRKALAKWLKESILRLGPTF
Sbjct: 171 SMIQRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKTSRRKALAKWLKESILRLGPTF 230

Query: 241 IKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP 300
           IK+GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETA++IVEEELG+PL  VF+ F+ EP
Sbjct: 231 IKVGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAIAIVEEELGSPLAGVFDHFEYEP 290

Query: 301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW 360
           IAAASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLR+IAEYLQKIDPKSDGAKRDW
Sbjct: 291 IAAASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRIIAEYLQKIDPKSDGAKRDW 350

Query: 361 VAIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI 414
           VAIYDECASVLYQE      AANAELFASNFK++DYVKVPTI W+YTTPQILTMEYVPGI
Sbjct: 351 VAIYDECASVLYQEIDYTKEAANAELFASNFKNLDYVKVPTIIWDYTTPQILTMEYVPGI 410

Query: 415 KINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 474
           KIN+IQ+LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF
Sbjct: 411 KINKIQALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 470

Query: 475 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE 534
           GMMGSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFE
Sbjct: 471 GMMGSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFE 530

Query: 535 ERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTF 594
           ERLAAQR+ERE+ T ELGFK+PLSKEEK+ KKK+RLAAIGEDLLAIAADQPFRFPATFTF
Sbjct: 531 ERLAAQRREREMATAELGFKQPLSKEEKVMKKKERLAAIGEDLLAIAADQPFRFPATFTF 590

Query: 595 VVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYN 654
           VVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKDFR RWDRQ++AFYN
Sbjct: 591 VVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDFRKRWDRQSQAFYN 650

Query: 655 LFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLAT 714
           LFRQADRVEKLAE IQRLEQGDLKLRVRTLESERAFQR+A VQKT+G+A+ +GSL+NLAT
Sbjct: 651 LFRQADRVEKLAEIIQRLEQGDLKLRVRTLESERAFQRIATVQKTIGNAIASGSLINLAT 710

Query: 715 ILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           ILYLNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 711 ILYLNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519623|ref|XP_003630100.1| ABC transporter-like protein [Medicago truncatula] gi|355524122|gb|AET04576.1| ABC transporter-like protein [Medicago truncatula]

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/753 (77%), Positives = 656/753 (87%), Gaps = 34/753 (4%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL FL+P+   +   S S+              C L  +IR  A K++G++V E      
Sbjct: 11  ELNFLAPQFTPKRRRSNSR-------------FCILPTQIR--ALKEEGALVEE------ 49

Query: 74  FIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEE 133
             + ++D + +GNG+   + S GSV G VNG  NGSLVKYVNGNG   VAVEVV    E 
Sbjct: 50  --RIVSDVKWSGNGTVV-NGSNGSVRGYVNGGGNGSLVKYVNGNG---VAVEVVEDFVET 103

Query: 134 EKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFV 193
            K  KE+ RKK++EEIGKEDAWFK++G+ +VEV+VAPGGRWSRFKTYSTIQRTLEIWGFV
Sbjct: 104 SK-RKEVGRKKRLEEIGKEDAWFKQNGEPQVEVAVAPGGRWSRFKTYSTIQRTLEIWGFV 162

Query: 194 LTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDI 253
           + F+F++WLN QKFSY+GGMTEEKK LRRK LAKWLKESILRLGPTFIKIGQQFSTRVDI
Sbjct: 163 IQFIFKSWLNRQKFSYKGGMTEEKKTLRRKTLAKWLKESILRLGPTFIKIGQQFSTRVDI 222

Query: 254 LAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRAR 313
           L QEYVD+LSELQDQVPPFPSETA++IVEEELGAP+  +F++FD EPIAAASLGQVHRAR
Sbjct: 223 LPQEYVDQLSELQDQVPPFPSETAMAIVEEELGAPIAGIFDQFDYEPIAAASLGQVHRAR 282

Query: 314 LKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 373
           L+G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ
Sbjct: 283 LRGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 342

Query: 374 E------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV 427
           E      AANAELFASNFK+MDYVKVP+I+W+YTTPQILTMEYVPGIKIN+IQ+LD+LGV
Sbjct: 343 EIDYTKEAANAELFASNFKNMDYVKVPSIYWDYTTPQILTMEYVPGIKINKIQALDQLGV 402

Query: 428 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG 487
           DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS NIREG
Sbjct: 403 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISQNIREG 462

Query: 488 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 547
           LLEAFYG+YEK  DKVL AM+QMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+E+E+ 
Sbjct: 463 LLEAFYGVYEKSPDKVLDAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREKEME 522

Query: 548 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 607
             E+GFKKPLSKEE++ KKK+RLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGK
Sbjct: 523 AAEVGFKKPLSKEEQVMKKKERLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGK 582

Query: 608 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 667
           GLDPRFDITEIAKPYA+ELLKFREAGVEVI+KD + RWDRQ++AFYNLFRQADRVEKLA 
Sbjct: 583 GLDPRFDITEIAKPYALELLKFREAGVEVIIKDIKKRWDRQSQAFYNLFRQADRVEKLAN 642

Query: 668 TIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAIL 727
            I+RLEQGDLKLRVR LESERAFQR+A VQKT+G+AVGAGSL+NLATIL LNSIRVPA +
Sbjct: 643 VIERLEQGDLKLRVRALESERAFQRIATVQKTIGNAVGAGSLINLATILSLNSIRVPATI 702

Query: 728 AYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           AY  CA FGFQVL GI+K+KKLD+RE+LITGTA
Sbjct: 703 AYFFCAIFGFQVLLGIVKIKKLDERERLITGTA 735

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509050|ref|XP_003523265.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1159 bits (2998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/765 (78%), Positives = 663/765 (86%), Gaps = 24/765 (3%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +SLSK       +  N       R  R+ A +++ +
Sbjct: 1   MAASSPLPLPELHFLSPQITPKRRISLSKLPSISRHVTSNVSL----RTARIRASREESA 56

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
           +             +ND E   NG  +A+ + +  SV+G VNG  NGSLVKY   +GN  
Sbjct: 57  LA----------DRVNDVEWTGNGAAAAASNANGASVSGYVNGATNGSLVKYGYEDGNDV 106

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
            A EVV +VE   KL+++  RKK++EEIGKEDAWFK++G E+VE  +APGGRW+RFKTYS
Sbjct: 107 AAAEVV-EVEASNKLSED-GRKKRLEEIGKEDAWFKQTGNEQVEGRLAPGGRWNRFKTYS 164

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGFV TF+F+AWLNNQKFSY+GGMTEEKK LRRKALAKWLKE+ILRLGPTFI
Sbjct: 165 TIQRTFEIWGFVATFIFKAWLNNQKFSYKGGMTEEKKTLRRKALAKWLKENILRLGPTFI 224

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 225 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 284

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRA LKG+EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 285 AAASLGQVHRATLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 344

Query: 362 AIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 415
           AIYDECASVLYQE      AANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 345 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 404

Query: 416 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 475
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 405 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 464

Query: 476 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 535
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 465 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 524

Query: 536 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 595
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 525 RLAAQRREREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 584

Query: 596 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 655
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 585 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 644

Query: 656 FRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 715
            RQADRV+KLA  IQRLEQGDLKLRVRTLESERAFQRVAAVQKT+G+AV AGSL+NLAT+
Sbjct: 645 IRQADRVDKLANIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGNAVAAGSLINLATV 704

Query: 716 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITG A
Sbjct: 705 LYLNSIRVPAIAAYIFCAIFGFQVLLGIVKVKKLDERERLITGIA 749

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083787|ref|XP_002307123.1| predicted protein [Populus trichocarpa] gi|222856572|gb|EEE94119.1| predicted protein [Populus trichocarpa]

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/625 (89%), Positives = 600/625 (96%), Gaps = 7/625 (1%)

Query: 142 RKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAW 201
           RKK++EEIGKE+AWFK++GQ+ VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTF+F+AW
Sbjct: 4   RKKRIEEIGKEEAWFKRAGQQ-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIFKAW 62

Query: 202 LNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           LN+QKFSYRGGMT+EKKV RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+
Sbjct: 63  LNSQKFSYRGGMTKEKKVARRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQ 122

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVV 321
           LSELQDQVPPFPSETAVSIVEEELGAP+DD+F++FD EPIAAASLGQVHRARLKG+EVV+
Sbjct: 123 LSELQDQVPPFPSETAVSIVEEELGAPVDDIFDQFDYEPIAAASLGQVHRARLKGQEVVI 182

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE------A 375
           KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE      A
Sbjct: 183 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEA 242

Query: 376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 435
           ANAELFASNFK M+YVKVPTI WEYTTPQILTMEYVPGIKIN+IQ+LD+LGVDRKRLGRY
Sbjct: 243 ANAELFASNFKKMEYVKVPTINWEYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRY 302

Query: 436 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 495
            VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE FYG+
Sbjct: 303 VVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGV 362

Query: 496 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 555
           YEKD DKVL+AMVQMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+ERE+ T ELGFKK
Sbjct: 363 YEKDPDKVLEAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATTELGFKK 422

Query: 556 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 615
            L+KEEK+EKKKQRLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI
Sbjct: 423 QLTKEEKMEKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 482

Query: 616 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQG 675
           TEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ+RAF+NLFRQADRV+KLAETIQRLEQG
Sbjct: 483 TEIAKPYALELLRFREAGVEVLLKDFRKRWDRQSRAFHNLFRQADRVQKLAETIQRLEQG 542

Query: 676 DLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFF 735
           DLKLRVRTLE+ERAFQRVAAVQKTVGSAV AGSL+NLATIL+LNSIRVPA  A + CAFF
Sbjct: 543 DLKLRVRTLEAERAFQRVAAVQKTVGSAVAAGSLINLATILFLNSIRVPATAASILCAFF 602

Query: 736 GFQVLFGIIKVKKLDQREKLITGTA 760
            FQVLFGIIKVK+LDQ+E+LITGTA
Sbjct: 603 SFQVLFGIIKVKRLDQQERLITGTA 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794095|ref|XP_002864932.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata] gi|297310767|gb|EFH41191.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata]

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/772 (76%), Positives = 658/772 (85%), Gaps = 29/772 (3%)

Query: 1   MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQ 60
           MA+ S SSSL LP + F      SR   +++   L R+ L  N+   NL  R R+    +
Sbjct: 1   MATSSSSSSLLLPNINF-----NSRQSTTVAGIFLPRNRLSYNH---NLQLRTRIIRASK 52

Query: 61  DGSVVVEEKREPEFIKGLND--FEVNGNGSASRSDSVGSVNGG--VNGYANGSLVKYVNG 116
           D +V VE++         N+    +NGNGSA +S + G  NG   +NG  NGSLVKYVNG
Sbjct: 53  DDNVAVEDRGNAVINGDYNNGSARLNGNGSARKSVN-GDYNGSARLNGNGNGSLVKYVNG 111

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           +        V  + EE  K  KE  RKK+VE+IG+EDAWFK + Q++VEVSVAPGGRW+R
Sbjct: 112 S--------VTVETEEVTKKRKEEVRKKRVEDIGQEDAWFKNTQQKQVEVSVAPGGRWNR 163

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV+ F+FR WL+NQKFSY+GGMTEEKKVLRRK LAKWLKE+ILRL
Sbjct: 164 FKTYSTIQRTLEIWGFVVQFIFRTWLSNQKFSYKGGMTEEKKVLRRKILAKWLKENILRL 223

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPS TA+SIVEEELG  ++D+F+RF
Sbjct: 224 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSATALSIVEEELGGSVEDIFDRF 283

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 284 DYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDLFDIDLKNLRVIAEYLQKVDPKSDGA 343

Query: 357 KRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 410
           KRDWVAIYDECASVLYQ      EAAN+ELFA+NFK+++YVKVP+I+WEYTTPQ+LTMEY
Sbjct: 344 KRDWVAIYDECASVLYQEIDYTKEAANSELFANNFKNLEYVKVPSIYWEYTTPQVLTMEY 403

Query: 411 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 470
           VPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 404 VPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 463

Query: 471 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 530
           FYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQAMVQMGVLVPTGD TAVRRTA FFL
Sbjct: 464 FYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQAMVQMGVLVPTGDLTAVRRTALFFL 523

Query: 531 NSFEERLAAQR--KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 588
           NSFEERLAAQR  KE     +ELGFKKPLSKEEK EKKKQRLAAIGEDLLAIAADQPFRF
Sbjct: 524 NSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQEKKKQRLAAIGEDLLAIAADQPFRF 583

Query: 589 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQ 648
           PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV++KD R RWDRQ
Sbjct: 584 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVVKDLRKRWDRQ 643

Query: 649 TRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGS 708
           ++AFYNLFRQADRVEKLA  I+RLEQGDLKLRVR LESERAFQRVAAVQKTVGSAV AGS
Sbjct: 644 SQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRALESERAFQRVAAVQKTVGSAVAAGS 703

Query: 709 LVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 760
           LVNLATILYLNS++ PA +AY  CAFF  QVL G+IKVKK DQREKLITGTA
Sbjct: 704 LVNLATILYLNSLKTPATIAYTVCAFFSLQVLIGVIKVKKFDQREKLITGTA 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	760
TAIR|locus:2177719	761	ATH13 "AT5G64940" [Arabidopsis	0.8	0.798	0.868	3.8e-291
UNIPROTKB|Q3ACS7	541	CHY_1218 "ABC1 family protein"	0.423	0.595	0.400	1.1e-62
TIGR_CMR|CHY_1218	541	CHY_1218 "ABC1 family protein"	0.423	0.595	0.400	1.1e-62
UNIPROTKB|Q74E76	561	GSU1088 "Quinone biosynthesis	0.459	0.622	0.346	1.4e-62
TIGR_CMR|GSU_1088	561	GSU_1088 "ubiquinone biosynthe	0.459	0.622	0.346	1.4e-62
TAIR|locus:2019838	711	AT1G79600 [Arabidopsis thalian	0.460	0.492	0.354	2e-61
TAIR|locus:2128116	682	ACDO1 "ABC1-like kinase relate	0.509	0.567	0.338	4.8e-58
TAIR|locus:2013041	692	AT1G71810 [Arabidopsis thalian	0.4	0.439	0.383	1.6e-57
TAIR|locus:2093711	793	AT3G24190 [Arabidopsis thalian	0.381	0.365	0.383	2.3e-50
TIGR_CMR|SPO_0144	509	SPO_0144 "2-polyprenylphenol 6	0.377	0.563	0.364	1e-48

TAIR|locus:2177719 ATH13 "AT5G64940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2760 (976.6 bits), Expect = 3.8e-291, Sum P(2) = 3.8e-291
 Identities = 536/617 (86%), Positives = 576/617 (93%)

Query:   153 DAWFKKSGQEK-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRG 211
             DAWFK + Q+K VEVSV PGGRW+RFKTYSTIQRTLEIWGFV+ F+FR WL+N+KFSY+G
Sbjct:   145 DAWFKNNTQQKQVEVSVTPGGRWNRFKTYSTIQRTLEIWGFVVQFIFRTWLSNKKFSYKG 204

Query:   212 GMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPP 271
             GMTEEKKVLRRK LAKWLKE+ILRLGPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPP
Sbjct:   205 GMTEEKKVLRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPP 264

Query:   272 FPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDL 331
             FPS TA+SIVEEELG  ++D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDL
Sbjct:   265 FPSATALSIVEEELGGSVEDIFDRFDYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDL 324

Query:   332 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE------AANAELFASNF 385
             FDIDLKNLRVIAEYLQK+DPKSDGAKRDWVAIYDECASVLYQE      AAN+ELFA+NF
Sbjct:   325 FDIDLKNLRVIAEYLQKVDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANSELFANNF 384

Query:   386 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 445
             KD++YVKVP+I+WEYTTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQIL
Sbjct:   385 KDLEYVKVPSIYWEYTTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQIL 444

Query:   446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
             SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQ
Sbjct:   445 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQ 504

Query:   506 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKERE--ITTQELGFKKPLSKEEKI 563
             AMVQMGVLVPTGD TAVRRTA FFLNSFEERLAAQRKE+E     +ELGFKKPLSKEEK 
Sbjct:   505 AMVQMGVLVPTGDLTAVRRTALFFLNSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQ 564

Query:   564 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 623
             EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA
Sbjct:   565 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 624

Query:   624 MELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRT 683
             +ELL+FREAGVEV++KD R RWDRQ++AFYNLFRQADRVEKLA  I+RLEQGDLKLRVR 
Sbjct:   625 LELLRFREAGVEVVVKDLRKRWDRQSQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRA 684

Query:   684 LESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGI 743
             LESERAFQRVAAVQKTVGSAV AGSLVNLATILYLNSI+ PA +AY  CAFF  QVL GI
Sbjct:   685 LESERAFQRVAAVQKTVGSAVAAGSLVNLATILYLNSIKTPATIAYTVCAFFSLQVLIGI 744

Query:   744 IKVKKLDQREKLITGTA 760
             IKVKK DQREKLITGTA
Sbjct:   745 IKVKKFDQREKLITGTA 761

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006810 "transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q3ACS7 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 137/342 (40%), Positives = 206/342 (60%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ-KID- 350
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q K + 
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQNKTNW 178

Query:   351 PKSDGAKRDWVAIYDECASVL-YQ-EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
              K +   R W  +       L Y  EA N E F  N K    + +P +FW +T   IL +
Sbjct:   179 GKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENILVL 237

Query:   409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGR 468
             E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  +  G 
Sbjct:   238 EAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL--GD 295

Query:   469 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 510
             +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   296 IILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1218 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 137/342 (40%), Positives = 206/342 (60%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ-KID- 350
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q K + 
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQNKTNW 178

Query:   351 PKSDGAKRDWVAIYDECASVL-YQ-EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
              K +   R W  +       L Y  EA N E F  N K    + +P +FW +T   IL +
Sbjct:   179 GKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENILVL 237

Query:   409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGR 468
             E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  +  G 
Sbjct:   238 EAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL--GD 295

Query:   469 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 510
             +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   296 IILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74E76 GSU1088 "Quinone biosynthesis kinase AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 553 (199.7 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 128/369 (34%), Positives = 208/369 (56%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEAANA------ELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
                 D V +  E A  + +E   A      E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 466
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   467 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 526
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   527 QFFLNSFEE 535
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_1088 GSU_1088 "ubiquinone biosynthesis protein AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 553 (199.7 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 128/369 (34%), Positives = 208/369 (56%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEAANA------ELFASNFKDMDYVKVPTIFWEYTTPQILTM 408
                 D V +  E A  + +E   A      E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   409 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 466
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   467 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 526
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   527 QFFLNSFEE 535
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

TAIR|locus:2019838 AT1G79600 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 136/384 (35%), Positives = 209/384 (54%)

Query:   180 YSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPT 239
             +  ++R+LEI G +  F  +  ++ QK   +G +  EK  ++++A+   L+    RLGPT
Sbjct:   110 FKALRRSLEILGALGGFALKLGID-QK---QGNL--EKN-MKKRAIE--LRRIFTRLGPT 160

Query:   240 FIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVE 299
             F+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F     E
Sbjct:   161 FVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPE 220

Query:   300 PIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK 357
             PIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D   
Sbjct:   221 PIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDFIT 277

Query:   358 RDWVAIYDECASVLYQE------AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV 411
              D + + DE A  +YQE      A NA  F   + D   V VP IFW+YT+ ++LTME+V
Sbjct:   278 TDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWV 337

Query:   412 PGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLI 470
              G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN+ A  D   G+L 
Sbjct:   338 EGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GKLA 394

Query:   471 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 530
             F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + F 
Sbjct:   395 FLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF- 453

Query:   531 NSFEERLAAQRKEREITTQELGFK 554
               F++ L         T  EL FK
Sbjct:   454 --FDDAL-------NYTVSELNFK 468

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2128116 ACDO1 "ABC1-like kinase related to chlorophyll degradation and oxidative stress 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 142/420 (33%), Positives = 216/420 (51%)

Query:   156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
             F+K   E V   V      SR    S + R +EI W   L      W +   + +  G  
Sbjct:   110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGLY-----W-STLTYDFLVGRD 159

Query:   215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
             EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct:   160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query:   275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
             E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct:   216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query:   333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE------AANAELFASNFK 386
               DL   R +A +L     +  G   +   I DE    L +E      A N E F  NFK
Sbjct:   276 YRDLFLFRTLASFLNGFSLQKLGCNAE--LIVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query:   387 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 446
             D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct:   334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query:   447 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
              G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct:   394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query:   506 AMVQMGVLVPTGDTTAVRRTAQ-FFLNSFEERLAAQRKEREITTQ--ELGFKKPLSKEEK 562
                ++G L    D + +    +  + NS  + LA     R +T Q  +L +  P+   E+
Sbjct:   451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLA-DFNFRSVTGQFNKLVYDFPIRIPER 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0080183 "response to photooxidative stress" evidence=IMP

TAIR|locus:2013041 AT1G71810 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 127/331 (38%), Positives = 192/331 (58%)

Query:   207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
             FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct:    96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query:   262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
             LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct:   156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query:   320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE----- 374
              VKVQRPG++    +D   LR IA  ++K    +     D  A+ DE A+ L++E     
Sbjct:   216 AVKVQRPGVRAAIALDTLILRYIAGLIKK----AGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query:   375 -AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 433
              A N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L  + V     G
Sbjct:   272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYLVEV-----G 326

Query:   434 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 493
              Y   S+  Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct:   327 VYC--SF-NQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query:   494 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRR 524
              +  +D   + +  V +G+L PT + +AV +
Sbjct:   382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTK 412

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2093711 AT3G24190 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 119/310 (38%), Positives = 179/310 (57%)

Query:   217 KKVLRRK-ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSE 275
             KKV   + A A  L+E +  LGP +IK+GQ  S R DIL+   + EL +L D+VP +P +
Sbjct:   182 KKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSYPDD 241

Query:   276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFD 333
              A++++EEELG P  DV+      PIAAASLGQV++ RLK  G+ V VKVQRP + +   
Sbjct:   242 VAMALIEEELGKPWYDVYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVT 301

Query:   334 IDLKNLRVIAEYLQKIDPKS-D--GAKRDWVA-IYDECASVLYQEAANAELFASNFK-DM 388
             +DL  +R +  +L+K    S D  G   +W A  ++E   V   E  N   FA   K D+
Sbjct:   302 VDLFVIRNLGLFLRKFPQVSVDVVGLVDEWAARFFEELDYV--NEGENGTYFAEMMKKDL 359

Query:   389 DYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG 448
               V VP  + +YT+ ++LT  ++ G K++  QS++    D   L    V  YL+Q+L  G
Sbjct:   360 PQVVVPKTYQKYTSRKVLTTSWIDGEKLS--QSIES---DVGELVNVGVICYLKQLLDTG 414

Query:   449 FFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM 507
             FFHADPHPGN I   D   G+L   DFG++  ++ + + G++EA   +  +D D +++  
Sbjct:   415 FFHADPHPGNMIRTPD---GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYDAIVKDF 471

Query:   508 VQMGVLVPTG 517
             V++G  +P G
Sbjct:   472 VKLG-FIPDG 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TIGR_CMR|SPO_0144 SPO_0144 "2-polyprenylphenol 6-hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 460 (167.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 110/302 (36%), Positives = 161/302 (53%)

Query:   232 SILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDD 291
             +++ +GP +IK GQ  STR D++ Q+  D+L  LQDQ+PPFP   A+  VE+ELG PL +
Sbjct:    64 ALMAMGPAYIKFGQVLSTRPDVVGQDLADQLRVLQDQLPPFPRAVAMREVEKELGRPLPE 123

Query:   292 VFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
             +F  F  EPIAAAS+ QVHRARL   GE+V VKV RPG++  F  D+      A  +   
Sbjct:   124 MFSEFS-EPIAAASIAQVHRARLADSGEDVAVKVLRPGIERAFRKDVDAFYFAARIVDLF 182

Query:   350 DPKSDGAKR----DWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPTIFWEYTT 402
              P   GA+R    + +  +D        L  E+A A  FA N K+    ++P + W  + 
Sbjct:   183 AP---GARRLRPMEVIEHFDGVVRGELDLRLESAAASEFADNTKEDAGFRLPPVRWSLSA 239

Query:   403 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVD 462
              +++T+ +  G+ +    +LD  G +R+ LG   +  +L   L  GFFHAD H GN+ V 
Sbjct:   240 RRVMTLGWADGVPLGDNAALDAAGHNRRDLGERVLRLFLLHALRDGFFHADMHQGNLKV- 298

Query:   463 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV 522
                 G +I YDFG+MG I    R    E  +G   +D  +V +   + G +  T D    
Sbjct:   299 -AADGDIIAYDFGIMGHIDEYTRRVYAEILFGFIRRDYKRVAEVHFEAGYVPATQDVDEF 357

Query:   523 RR 524
              R
Sbjct:   358 AR 359

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	760
COG0661	517	COG0661, AarF, Predicted unusual protein kinase [G	1e-144
TIGR01982	437	TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase	1e-100
PRK04750	537	PRK04750, ubiB, putative ubiquinone biosynthesis p	1e-78
pfam03109	117	pfam03109, ABC1, ABC1 family	4e-40
TIGR03724	199	TIGR03724, arch_bud32, Kae1-associated kinase Bud3	1e-05
cd05167	311	cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas	1e-04
PRK14879	211	PRK14879, PRK14879, serine/threonine protein kinas	3e-04

>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function prediction only]

 Score =  433 bits (1115), Expect = e-144
 Identities = 188/557 (33%), Positives = 276/557 (49%), Gaps = 55/557 (9%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
                       R   + G +L    R  L  +  S+ G          R+  A+ L+ +
Sbjct: 5   YAVSRLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEELREKRAERLRLA 64

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +  LGPTFIK+GQ  STR D++  EY +EL++LQD+VPPFP E A  I+EEELG P++++
Sbjct: 65  LEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEEL 124

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           F  F+ EPIA+AS+ QVHRA LK GEEV VKVQRPG+++  + DLK LR +A  ++++ P
Sbjct: 125 FSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPP 184

Query: 352 KSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPTIFWEYTTPQI 405
              G + D V + DE    L +      EAANAE F  NFKD   V VP ++WEYTT ++
Sbjct: 185 --GGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRV 242

Query: 406 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 465
           LTME++ GIKI+ I +L   G+DRK L    V ++L Q+L  GFFHADPHPGNI V    
Sbjct: 243 LTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD- 301

Query: 466 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 525
            GR++  DFG++G + P  R  L E       +D D+V +  V++G + P  D   +   
Sbjct: 302 -GRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAA 360

Query: 526 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 585
            +  L                      + KPL +             I + L  +A   P
Sbjct: 361 IRAVLEPI-------------------YGKPLEEIS--------FGEILDKLFEVARRFP 393

Query: 586 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRW 645
            R P     + R   +++G+G+ LDPRF++  +A+P   + LK +      +L++ ++  
Sbjct: 394 MRLPPELVLLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQL--SPKLLRELKDEA 451

Query: 646 DRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER-AFQRVAAVQKTVGSA- 703
                A   L R    +               +  +    SE  A   + AV +    + 
Sbjct: 452 VAVLNALPLLPRLLRDLLDN-----------DREELSLRSSEELALLLLKAVARLSIGSI 500

Query: 704 --VGAGSLVNLATILYL 718
             V     V L  IL L
Sbjct: 501 LLVVLAVTVLLIAILLL 517

Length = 517

>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase

 Score =  317 bits (814), Expect = e-100
 Identities = 141/413 (34%), Positives = 220/413 (53%), Gaps = 34/413 (8%)

Query: 221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSI 280
           R  +  + L+ ++  LGPTFIK GQ  STR D+L  +  +ELS LQD+VPPF  + A  +
Sbjct: 45  RLMSRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKV 104

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNL 339
           +E  LG PL+++F  F+ +P+AAAS+ QVHRARL  G+EV VKV RPG++     D+  L
Sbjct: 105 IEAALGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALL 164

Query: 340 RVIAEYLQKIDPKSDGAK-RDWVAIYDECASV---LYQEAANAELFASNFKDMDYVKVPT 395
             +A  ++++ P S   +  + V  +++       L +EAANA     NFK+   V VP 
Sbjct: 165 YRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPE 224

Query: 396 IFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH 455
           ++W+ T+ ++LTME++ GI ++ I +LDE G+DRK L      S+L Q+L  GFFHAD H
Sbjct: 225 VYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLH 284

Query: 456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP 515
           PGNI V     G++I  DFG++G +S   R  L E  YG   +D  +V +     G +  
Sbjct: 285 PGNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPS 342

Query: 516 TGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGE 575
             D           +  FE+ +      R I   E  F +PL        K+  +  +  
Sbjct: 343 DTD-----------MAEFEQAI------RAIG--EPIFGQPL--------KEISVGRLLA 375

Query: 576 DLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 628
            L  I  D           + +    ++G+G+ LDP  ++ ++A+P+    ++
Sbjct: 376 GLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMWKVAEPFVKRWIR 428

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 437

>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed

 Score =  262 bits (671), Expect = 1e-78
 Identities = 116/302 (38%), Positives = 176/302 (58%), Gaps = 16/302 (5%)

Query: 222 RKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIV 281
            K   + L+ ++  LGP F+K GQ  STR D+   +  DEL+ LQD+VPPF    A +I+
Sbjct: 48  DKPRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAII 107

Query: 282 EEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNL 339
           E+ LG P+++ F+ FD++P+A+AS+ QVH ARLK  G EVVVKV RP +  + D DL  +
Sbjct: 108 EKALGGPVEEWFDDFDIKPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALM 167

Query: 340 RVIAEYLQKIDPKSDGAK---RDWVA-----IYDECASVLYQEAANAELFASNFKDMDYV 391
             +A +++++ P  DG +   R+ VA     ++DE    L +EAANA     NF+D D +
Sbjct: 168 YRLARWVERLLP--DGRRLKPREVVAEFEKTLHDELD--LMREAANASQLRRNFEDSDML 223

Query: 392 KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH 451
            VP ++W+Y +  ++ ME + GI ++ + +L   G D K L    VE +  Q+   GFFH
Sbjct: 224 YVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFH 283

Query: 452 ADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ 509
           AD HPGNI V        R I  DFG++GS++   +  L E F   + +D  +V +  V+
Sbjct: 284 ADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHVE 343

Query: 510 MG 511
            G
Sbjct: 344 SG 345

Length = 537

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score =  142 bits (361), Expect = 4e-40
 Identities = 62/122 (50%), Positives = 76/122 (62%), Gaps = 12/122 (9%)

Query: 283 EELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           EELGAP+++VF  FD EPIAAAS+ QVHRA LK GEEV VKVQRPG+K     DLK L+ 
Sbjct: 1   EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKDGEEVAVKVQRPGVKKRIRSDLKLLKF 60

Query: 342 IAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------EAANAELFASNFKDMDYVKVPT 395
           +A+ L+K  P       D   + DE    L Q      EAANAE F  NF D+ +V VP 
Sbjct: 61  LAKILKKFFP-----GFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPK 115

Query: 396 IF 397
           ++
Sbjct: 116 VY 117

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 391 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR-KRLGRYAVESYLEQILSHGF 449
           V  P ++      + + MEY+ G  +     ++E   +  + +GR      + ++   G 
Sbjct: 59  VNTPVVYDVDPDNKTIVMEYIEGKPLK--DVIEEGNDELLREIGRL-----VGKLHKAGI 111

Query: 450 FHADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLL 489
            H D    NI    V   +L   DFG+                    + S  P+  E L 
Sbjct: 112 VHGDLTTSNII---VRDDKLYLIDFGLGKYSDEIEDKAVDLHVLKRSLESTHPDKAEELF 168

Query: 490 EAF---YGIYEKDADKVLQAM 507
           EAF   Y     +A  VL+ +
Sbjct: 169 EAFLEGYREEFGEAKDVLERV 189

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine [Unknown function, General]. Length = 199

>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 31/143 (21%)

Query: 435 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP--NIREGLLEAF 492
           Y++ SYL QI        D H GNI +DD   G +I  DFG +  ISP  N++       
Sbjct: 155 YSLISYLLQI-------KDRHNGNIMIDDD--GHIIHIDFGFIFEISPGGNLK------- 198

Query: 493 YGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREI---TT 548
              +E    K+ + MVQ MG    + + T  +   +  + +F   LA +    EI     
Sbjct: 199 ---FESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRAF---LAVRPYMDEIVSLVE 249

Query: 549 QELGFKKPLSKEEKIEKKKQRLA 571
             L    P  + + I+  +QR A
Sbjct: 250 LMLDSGLPCFRGDTIKNLRQRFA 272

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311

>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 30/138 (21%)

Query: 391 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF 450
           V VP +++      I+ MEY+ G  +     ++  G++   L R  +   + ++ S G  
Sbjct: 61  VNVPAVYFVDPENFIIVMEYIEGEPLK--DLINSNGMEELELSR-EIGRLVGKLHSAGII 117

Query: 451 HADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLLE 490
           H D    N+    ++GG++   DFG+                    + S  P+  E L E
Sbjct: 118 HGDLTTSNMI---LSGGKIYLIDFGLAEFSKDLEDRAVDLHVLLRSLESTHPDWAEELFE 174

Query: 491 AF---YG-IYEKDADKVL 504
           AF   Y  +  + A++VL
Sbjct: 175 AFLEGYREVMGEKAEEVL 192

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	760
COG0661	517	AarF Predicted unusual protein kinase [General fun	100.0
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	100.0
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	100.0
KOG1235	538	consensus Predicted unusual protein kinase [Genera	100.0
KOG1236	565	consensus Predicted unusual protein kinase [Genera	100.0
KOG1234	363	consensus ABC (ATP binding cassette) 1 protein [Ge	100.0
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	99.89
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.79
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.78
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.77
smart00090	237	RIO RIO-like kinase.	99.69
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.68
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.67
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.66
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.65
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.65
KOG0605	550	consensus NDR and related serine/threonine kinases	99.63
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.62
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.61
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.61
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.6
PRK14879	211	serine/threonine protein kinase; Provisional	99.59
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.59
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.59
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.59
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.58
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.58
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.58
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.58
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.57
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.57
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.57
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.57
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.56
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.56
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.56
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.56
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.56
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.56
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.55
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.55
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.55
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.55
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.55
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.55
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.55
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.54
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.54
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.54
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.54
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.54
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.54
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.54
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.54
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.54
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.53
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.53
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.53
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.53
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.53
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.53
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.53
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.53
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.53
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.53
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.53
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.53
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.53
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.52
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.52
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.52
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.52
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.52
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.52
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.52
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.52
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.52
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.51
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.51
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.51
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.51
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.51
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.5
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.5
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.49
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.49
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.49
PRK09188	365	serine/threonine protein kinase; Provisional	99.49
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.49
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.49
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.48
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.48
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.48
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.48
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.48
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.48
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.47
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.47
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.47
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.47
KOG0578	550	consensus p21-activated serine/threonine protein k	99.47
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.46
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.46
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.46
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.46
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.46
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.46
PTZ00267	478	NIMA-related protein kinase; Provisional	99.46
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.46
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.46
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.45
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.45
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.45
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.45
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.45
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.45
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.45
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.45
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.45
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.44
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.44
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.44
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.44
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.44
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.44
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.44
PTZ00283	496	serine/threonine protein kinase; Provisional	99.44
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.44
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.44
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.44
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.43
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.43
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.43
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.43
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.43
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.43
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.42
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.42
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.42
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.42
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.42
PHA02988	283	hypothetical protein; Provisional	99.42
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.42
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.42
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.42
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.42
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.42
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.42
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.42
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.41
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.41
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.41
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.41
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.41
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.41
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.41
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.41
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.41
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.41
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.4
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.4
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.4
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.4
KOG0198	313	consensus MEKK and related serine/threonine protei	99.4
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.4
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.4
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.4
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.4
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.39
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.39
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.39
PHA03212	391	serine/threonine kinase US3; Provisional	99.39
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.39
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.39
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.38
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.38
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.38
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.38
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.38
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.38
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.38
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.38
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.38
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.38
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.38
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.38
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.38
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.38
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.38
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.38
PHA03211	461	serine/threonine kinase US3; Provisional	99.37
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.37
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.37
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.37
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.37
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.37
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.37
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.37
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.37
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.37
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.37
PTZ00284	467	protein kinase; Provisional	99.37
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.37
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.37
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.37
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.36
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.36
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.36
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.36
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.36
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.36
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.36
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.36
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.36
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.36
PHA03209	357	serine/threonine kinase US3; Provisional	99.36
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.36
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.36
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.36
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.36
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.36
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.36
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.36
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.36
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.36
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.36
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.35
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.35
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.35
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.35
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.35
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.35
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.35
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.35
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.35
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.35
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.35
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.35
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.35
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.35
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.34
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.34
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.34
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.34
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.34
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.34
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.34
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.34
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.34
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.34
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.34
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.34
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.34
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.33
PHA03207	392	serine/threonine kinase US3; Provisional	99.33
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.33
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.33
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.33
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.33
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.33
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	99.33
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.33
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.33
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.33
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.32
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.32
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.32
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.32
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.32
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.32
PRK12274	218	serine/threonine protein kinase; Provisional	99.32
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.32
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.32
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.32
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.32
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.32
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.32
PTZ00036	440	glycogen synthase kinase; Provisional	99.32
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.31
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.31
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.31
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.31
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.31
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.31
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.31
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.31
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.3
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.3
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.3
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.3
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.3
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.3
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.3
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.3
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.29
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.29
KOG0610	459	consensus Putative serine/threonine protein kinase	99.29
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.29
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.29
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.29
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.29
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.29
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.29
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.28
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.28
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.28
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.28
PHA02882	294	putative serine/threonine kinase; Provisional	99.28
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.28
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.28
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.28
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.28
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.28
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.27
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.27
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.27
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.27
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.27
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.27
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.27
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.26
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.26
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.26
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.26
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.26
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.26
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.25
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.25
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.25
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.25
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.25
PLN00009	294	cyclin-dependent kinase A; Provisional	99.24
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.24
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.24
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.24
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.24
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.24
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.23
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.23
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.23
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.22
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.22
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.22
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.22
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.22
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.22
KOG0589	426	consensus Serine/threonine protein kinase [General	99.22
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.21
PRK10345	210	hypothetical protein; Provisional	99.21
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	99.21
PHA03210	501	serine/threonine kinase US3; Provisional	99.21
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.2
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.2
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.2
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.19
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.19
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.18
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.18
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.17
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.17
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.17
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.17
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.17
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.17
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.16
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.16
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.16
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.16
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.15
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.15
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.15
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.15
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.14
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.14
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.13
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.13
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.12
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.12
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.11
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.11
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.11
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.11
KOG3653	534	consensus Transforming growth factor beta/activin	99.11
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.09
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.09
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.08
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.07
KOG0586	596	consensus Serine/threonine protein kinase [General	99.07
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.06
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.04
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.04
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.04
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.03
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.03
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.03
KOG3087	229	consensus Serine/threonine protein kinase [General	99.02
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.02
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.01
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.98
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.97
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.92
KOG2052	513	consensus Activin A type IB receptor, serine/threo	98.89
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.87
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.86
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.85
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.85
KOG1152	772	consensus Signal transduction serine/threonine kin	98.82
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.82
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.81
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.8
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.75
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	98.72
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.72
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.72
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.7
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	98.66
KOG0584	632	consensus Serine/threonine protein kinase [General	98.66
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.65
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.65
PF01636	239	APH: Phosphotransferase enzyme family This family	98.65
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.61
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.57
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.56
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.55
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.52
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.52
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.49
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.49
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.47
PRK10593	297	hypothetical protein; Provisional	98.47
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.45
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.4
PRK05231	319	homoserine kinase; Provisional	98.39
KOG2270	520	consensus Serine/threonine protein kinase involved	98.33
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	98.26
PRK09550	401	mtnK methylthioribose kinase; Reviewed	98.22
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.2
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.2
PLN00181	793	protein SPA1-RELATED; Provisional	98.19
KOG2268	465	consensus Serine/threonine protein kinase [Signal	98.16
PLN02756	418	S-methyl-5-thioribose kinase	98.14
PRK12396	409	5-methylribose kinase; Reviewed	98.05
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	98.05
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	98.01
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	97.93
PRK06148	1013	hypothetical protein; Provisional	97.92
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.86
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.84
PRK09902	216	hypothetical protein; Provisional	97.82
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.8
PRK06149	972	hypothetical protein; Provisional	97.69
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.68
PLN02876	822	acyl-CoA dehydrogenase	97.67
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.57
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.5
COG2334	331	Putative homoserine kinase type II (protein kinase	97.34
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.25
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.21
PRK11768	325	serine/threonine protein kinase; Provisional	97.06
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	96.98
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.95
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	96.9
PLN02236	344	choline kinase	96.86
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.72
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.6
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	96.47
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.46
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	96.1
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.01
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	95.84
KOG2269	531	consensus Serine/threonine protein kinase [Signal	95.26
PRK10271	188	thiK thiamine kinase; Provisional	95.1
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	94.82
PTZ00384	383	choline kinase; Provisional	94.65
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	94.11
PTZ00296	442	choline kinase; Provisional	93.31
COG4857	408	Predicted kinase [General function prediction only	93.03
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	92.3
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	92.11
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	91.8
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	91.42
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	91.18
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	90.33
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	89.67
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	88.54
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	85.0
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	84.27

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=3.4e-82  Score=717.96  Aligned_cols=381  Identities=43%  Similarity=0.766  Sum_probs=359.1

Q ss_pred             HHHHHHHHHHHHHHHhCCeeeehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccc
Q 004334          221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP  300 (760)
Q Consensus       221 ~~~~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~P  300 (760)
                      +++..+++|+++|++|||+|||+||+||||+|++|++|+++|++|||+|||+|+++++++|++++|.+++++|++|+++|
T Consensus        53 ~~~~~~~rL~~~L~~LGPtfIK~GQ~LStR~Dl~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~P  132 (517)
T COG0661          53 LREKRAERLRLALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEP  132 (517)
T ss_pred             HhHhHHHHHHHHHHHhCCchhhhhhHHhcCccccCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCCHHHHHHHcCCCc
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH------H
Q 004334          301 IAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY------Q  373 (760)
Q Consensus       301 IasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~------~  373 (760)
                      +|||||||||+|++ +|++|||||||||+++.+..|+.+|+.++.+++++.|.  +...++..+++||.+.+.      +
T Consensus       133 iAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~--~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         133 IASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPG--GRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             hhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCc--cccCChHHHHHHHHHHHHHHhCHHH
Confidence            99999999999999 69999999999999999999999999999999998764  345789999999998875      5


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      ||+|+++|++||++++.++||+|||+||+++||||||++|++++|+..++..|.|++.++..++++|++|++.+||||||
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD  290 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD  290 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  533 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~  533 (760)
                      ||||||+|+.  +|+++++||||++++++++|..++++++++.++|++.+++.+.++|.+++..|...+..++..+.+.+
T Consensus       291 pHpGNi~v~~--~g~i~~lDfGi~g~l~~~~r~~l~~~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~  368 (517)
T COG0661         291 PHPGNILVRS--DGRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPI  368 (517)
T ss_pred             CCccceEEec--CCcEEEEcCcceecCCHHHHHHHHHHHHHHHhhCHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHhh
Confidence            9999999996  89999999999999999999999999999999999999999999999999999999998888877665


Q ss_pred             HHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhcccCCCC
Q 004334          534 EERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF  613 (760)
Q Consensus       534 ~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~~LdP~~  613 (760)
                      .                   +.++.        +.++++++.+++++++++++++|++++++.|++.++||++++|||++
T Consensus       369 ~-------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~r~p~~l~ll~r~~~~vEg~~~~ldp~~  421 (517)
T COG0661         369 Y-------------------GKPLE--------EISFGEILDKLFEVARRFPMRLPPELVLLQRTLLLVEGVGRQLDPRF  421 (517)
T ss_pred             h-------------------CCChh--------hccHHHHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHHHHHhhCccc
Confidence            2                   23432        45788999999999999999999999999999999999999999999


Q ss_pred             CHHHhHHHHHHHHHHhhhh
Q 004334          614 DITEIAKPYAMELLKFREA  632 (760)
Q Consensus       614 d~~~~a~P~~~~~l~~~~~  632 (760)
                      |+++.+.||+.+++..+..
T Consensus       422 ~~~~~a~p~~~~~~~~~~~  440 (517)
T COG0661         422 NLWAVAQPLLAKWLKKQLS  440 (517)
T ss_pred             cHHHHhhHHHHHHHHHhhh
Confidence            9999999999999876654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=100.00  E-value=2e-81  Score=716.06  Aligned_cols=410  Identities=31%  Similarity=0.551  Sum_probs=369.6

Q ss_pred             HHHHHHHHHHHHhCCeeeehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004334          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (760)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIas  303 (760)
                      ..|+++|.+|++|||+|||+||+||||+|++|++|+++|++|||+|||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        50 ~~~~rlr~aLe~LGp~fIKlGQ~LStR~DllP~~~~~eL~~Lqd~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~Plas  129 (537)
T PRK04750         50 PRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIKPLAS  129 (537)
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHcCcccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHhcChhhhcC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccEEEEEEE-C-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH------HH
Q 004334          304 ASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------EA  375 (760)
Q Consensus       304 aSiGQVhrA~l-~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~------EA  375 (760)
                      ||+||||+|++ + |++|||||+||++.+.|..|+.+|+.++++++++.|.  ....++.++++|+.+.+.+      |+
T Consensus       130 aSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~--~~~l~~~~~v~e~~~~l~~ElD~~~Ea  207 (537)
T PRK04750        130 ASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPD--GRRLKPREVVAEFEKTLHDELDLMREA  207 (537)
T ss_pred             CCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcc--cccCCHHHHHHHHHHHHHHhhCHHHHH
Confidence            99999999999 5 9999999999999999999999999999999998764  3446788889998877654      59


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      +|+.+|+++|.+.+.++||+|||+||+++|||||||+|++++++..+...+.+++.+++.+++.|+.|+|.+||||+|||
T Consensus       208 ~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpH  287 (537)
T PRK04750        208 ANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMH  287 (537)
T ss_pred             HHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            99999999999999999999999999999999999999999998777788899999999999999999999999999999


Q ss_pred             CCcEEEeccCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||||+|++  +|    +++++|||+++.++++.|+.+.+++.|+.++|++.+++.+.++|.+.+..|...++.++..+++
T Consensus       288 PGNIlv~~--~g~~~~~i~llDFGivg~l~~~~r~~l~~~~~a~~~~D~~~v~~~~~~~g~~~~~~~~~~l~~~i~~~~~  365 (537)
T PRK04750        288 PGNIFVSY--DPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCE  365 (537)
T ss_pred             hHHeEEec--CCCCCCeEEEEecceEEECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            99999985  55    9999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhcccCC
Q 004334          532 SFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP  611 (760)
Q Consensus       532 ~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~~LdP  611 (760)
                      .|.                   ..|+.        +++++.++.++++++++|++++|++++++.|+++++||++++|||
T Consensus       366 ~~~-------------------~~~l~--------~i~~~~~l~~l~~~~r~~~~~ip~~l~ll~ktl~~lEG~~r~LdP  418 (537)
T PRK04750        366 PIF-------------------DKPLA--------EISFGHVLLRLFNTARRFNVEIQPQLVLLQKTLLNVEGLGRQLDP  418 (537)
T ss_pred             HHh-------------------CCCcc--------cccHHHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence            763                   34554        357889999999999999999999999999999999999999999


Q ss_pred             CCCHHHhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004334          612 RFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQR  671 (760)
Q Consensus       612 ~~d~~~~a~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~l~~  671 (760)
                      ++|+++.++||+.+++.++. ++....+.+.+.+..+..   .+.++|   +.+.+++++
T Consensus       419 ~~d~~~~a~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~lP---~~l~~~l~~  471 (537)
T PRK04750        419 QLDLWKTAKPFLERWMKEQV-GPRALVRALKEEAPFWAE---KLPELP---RLVHDSLRQ  471 (537)
T ss_pred             CCCHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH---HHHHhH---HHHHHHHHh
Confidence            99999999999999998766 444444454444433322   223344   456666664

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=100.00  E-value=2.7e-74  Score=648.48  Aligned_cols=377  Identities=36%  Similarity=0.627  Sum_probs=350.0

Q ss_pred             HHHHHHHHHHHHhCCeeeehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004334          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (760)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIas  303 (760)
                      ..|++++++|++|||+|||+||++|||+|++|++||++|++|||++||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        48 ~~~~~l~~~l~~lGp~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~p~~~~~~~~~l~~elg~~~~~~F~~fd~~plas  127 (437)
T TIGR01982        48 SRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAA  127 (437)
T ss_pred             cHHHHHHHHHHHcCchhHHHhHHHHhCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCcCHHHHHhhCCCcceee
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH------HHHH
Q 004334          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY------QEAA  376 (760)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~------~EA~  376 (760)
                      ||+||||+|++ +|++||||||||++.+.+..|+.+|+.++.++++..+..  ...++..+++|+...+.      +||+
T Consensus       128 aSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~Eldf~~Ea~  205 (437)
T TIGR01982       128 ASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDS--RRLRPTEVVKEFEKTLRRELDLRREAA  205 (437)
T ss_pred             eehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccc--cccCHHHHHHHHHHHHHHHHCHHHHHH
Confidence            99999999999 799999999999999999999999999999999887653  34678888999888765      4699


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHP  456 (760)
                      |+++|++++++.+.+++|++|+++|++++|||||++|.++.++......+.++..++..+++.++.|+|.+|+||+||||
T Consensus       206 n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D~hP  285 (437)
T TIGR01982       206 NASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHP  285 (437)
T ss_pred             HHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCCCCc
Confidence            99999999999999999999999999999999999999999987666666788899999999999999999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEER  536 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~~~  536 (760)
                      |||++++  +|+++++|||+++.++++.+..+.+++.++..+|++.+++.+.++|...+..|...+..++..+++.|.  
T Consensus       286 gNilv~~--~g~i~liDfG~~~~l~~~~r~~l~~l~~a~~~~D~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~~--  361 (437)
T TIGR01982       286 GNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIF--  361 (437)
T ss_pred             ccEEECC--CCcEEEEeCCCeeECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHh--
Confidence            9999975  889999999999999999999999999999999999999999999999999999999999988877663  


Q ss_pred             HHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhcccCCCCCHH
Q 004334          537 LAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT  616 (760)
Q Consensus       537 l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~~LdP~~d~~  616 (760)
                                       +.++.        +.++++++.++++++++|++++|++|+++.|+++++||+++.|||+||++
T Consensus       362 -----------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~r~l~~leg~~~~L~p~~~~~  416 (437)
T TIGR01982       362 -----------------GQPLK--------EISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMW  416 (437)
T ss_pred             -----------------CCChh--------hCCHHHHHHHHHHHHHHCCccCCHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence                             12332        34677889999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhh
Q 004334          617 EIAKPYAMELLKFRE  631 (760)
Q Consensus       617 ~~a~P~~~~~l~~~~  631 (760)
                      ++++||+.+++.++.
T Consensus       417 ~~~~p~~~~~~~~~~  431 (437)
T TIGR01982       417 KVAEPFVKRWIRKRL  431 (437)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=7.3e-64  Score=566.28  Aligned_cols=376  Identities=42%  Similarity=0.639  Sum_probs=307.9

Q ss_pred             HHHHHHHHHHHHhCCeeeehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004334          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (760)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIas  303 (760)
                      ..|++|+++++.|||+|||+||.+|||+|++|+||.++|+.|||++||+|++++.+++++|+|.+++++|.+||++|||+
T Consensus        92 ~~a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaa  171 (538)
T KOG1235|consen   92 SAAERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAA  171 (538)
T ss_pred             HHHHHHHHHHHHcCCeEEEechhhccccccCcHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhh
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH------HHH
Q 004334          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ------EAA  376 (760)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~------EA~  376 (760)
                      ||+||||+|++ +|+.|||||||||+++.+..|+.+++.++.+++++.|.     ++|..++||+.+.+.+      ||+
T Consensus       172 ASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~-----~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  172 ASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPD-----FDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             cchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcC-----CchhhHHHHHHhhhHhhcchHHHHH
Confidence            99999999999 79999999999999999999999999999999999886     4588999999998775      599


Q ss_pred             HHHHHHHhcCCCC---ceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMD---YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~---~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      |+++|+++|++.+   .|+||+|||++|+++|||||||+|++++|+..++..|+++..++..+.++|++|||.+||||||
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaD  326 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHAD  326 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCC
Confidence            9999999999998   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEecc--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~--~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||||||+|++.  ++++++++|||+++.++++.|..|+++|+++...|...|.+...++|... +.+...+.-++.. ..
T Consensus       327 PHPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~~~~~~a~~~~d~~~~~~~~~~~g~~~-d~~~~~fa~~l~~-~~  404 (538)
T KOG1235|consen  327 PHPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDYAELWLALVFEDEKAMQALAEQLGLGL-DDLYPLFATALTG-RP  404 (538)
T ss_pred             CCCCcEEEecCCCCCccEEEEcccccccccHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccc-chhhhhhHHHHhC-Cc
Confidence            99999999953  36789999999999999999999999999999977777777777777654 3333222222111 00


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCC--CCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhccc
Q 004334          532 SFEERLAAQRKEREITTQELGFKK--PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGL  609 (760)
Q Consensus       532 ~~~~~l~~~~~~~~~~~~~~~f~~--~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~~L  609 (760)
                       +....            ..+...  ....++... ........+..+.+.+.    ++|..+.++.|+...+.|+-..+
T Consensus       405 -~~s~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~----~~p~~i~li~k~~~l~r~~~~~l  466 (538)
T KOG1235|consen  405 -WDSVI------------GAGITKYLKGLEEDADE-NQKIASAKFPGISQLLR----RMPREILLILKTNDLLRGLSSNL  466 (538)
T ss_pred             -hhhcc------------ccchhhhhhhhhhhhhh-HHHHHHHHhhHHHHHHH----hchHhhhhhcccHHHHHhHHHHh
Confidence             00000            000000  000011111 11222333333443333    35999999999998888887777


Q ss_pred             CCCC----CHHHhHHHHHH
Q 004334          610 DPRF----DITEIAKPYAM  624 (760)
Q Consensus       610 dP~~----d~~~~a~P~~~  624 (760)
                      .-..    ++.+.++..+.
T Consensus       467 ~~~~~~~~~f~~~~~~~~~  485 (538)
T KOG1235|consen  467 GIPSSLERSFLEMARLCLR  485 (538)
T ss_pred             ccccccchHHHHHHHHHHH
Confidence            5444    45555555554

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=5.4e-54  Score=460.72  Aligned_cols=372  Identities=24%  Similarity=0.367  Sum_probs=322.5

Q ss_pred             HHHHHHHHHHHHHhCCeeeehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCC-ChhhhhcccCcccc
Q 004334          223 KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGA-PLDDVFERFDVEPI  301 (760)
Q Consensus       223 ~~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~-~~~~iF~~fd~~PI  301 (760)
                      .-|.+.|..++|..||||||+|||+|||+|+||+++|.+|++|+.+|+|++|...++.++.++|. .++++|.+|++.||
T Consensus       118 ~lW~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PI  197 (565)
T KOG1236|consen  118 TLWLRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVTPHSFAFTKKKLRQAFGVKKIEEIFSEFNREPI  197 (565)
T ss_pred             HHHHHHHHHHHHhcCCceEEecccccccccccCHHHHHHHHHHhccCCCCchHHHHHHHHHHHCcCcHHHHHHhcCCccc
Confidence            34678899999999999999999999999999999999999999999999999999999999998 99999999999999


Q ss_pred             ccccccEEEEEEEC-----------------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHH
Q 004334          302 AAASLGQVHRARLK-----------------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (760)
Q Consensus       302 asaSiGQVhrA~l~-----------------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~  364 (760)
                      |+|||||||+|+++                 .+.|||||.||+++++|+.|+.||++.|+..+.++...+.   ++...+
T Consensus       198 GsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~Il~f~Akl~~~vP~l~wL---~l~~~v  274 (565)
T KOG1236|consen  198 GSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLGILGFGAKLINNVPDLSWL---SLPLEV  274 (565)
T ss_pred             ccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHHHHHHHHHHHhhhhhhhhhcCccccc---cCcchH
Confidence            99999999999761                 1479999999999999999999999999998855332221   222233


Q ss_pred             HHHHH------HHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCC-CHHHHHHHHH
Q 004334          365 DECAS------VLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV-DRKRLGRYAV  437 (760)
Q Consensus       365 ~E~~~------~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~-d~~~la~~lv  437 (760)
                      +.|.-      .+++||.++.+|..||++...|.+|+++..+.++.||+-+|.+|.++..+........ -.+.++..++
T Consensus       275 kqF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~  354 (565)
T KOG1236|consen  275 KQFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVETYERGLSVLRFVKWKSQPEALVKKVAKLGV  354 (565)
T ss_pred             HHHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcccccccccceeeeeccccccHHhhhhcccChHHHHHHHHHHHH
Confidence            33322      3578999999999999999999999999999999999999999999998765433221 3577888999


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCC-----------------------------------------CcEEEEeecc
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNG-----------------------------------------GRLIFYDFGM  476 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~-----------------------------------------g~l~LiDFG~  476 (760)
                      +++++|++.++|+|+|+|||||++...++                                         .+++++|-|+
T Consensus       355 ~AllkMl~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~~e~~d~~~~~~~~~~~~P~lvflDtGi  434 (565)
T KOG1236|consen  355 NALLKMLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFRSEVRDARFTDSPDLEYEPTLVFLDTGI  434 (565)
T ss_pred             HHHHHHHHhhcceecccCCCcEEEEecCCCccccccccchhhhHHhhhhhhhhhhhhhhhhhccccccCCCeEEEecchh
Confidence            99999999999999999999999975334                                         5799999999


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCC
Q 004334          477 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP  556 (760)
Q Consensus       477 v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~  556 (760)
                      +..+++..+.++..+|.|+++.|...+.+.+++........|.+.+.+.++.++.....            +      ..
T Consensus       435 v~kLs~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEklv~~~~s------------t------~s  496 (565)
T KOG1236|consen  435 VTKLSHQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKLVLKARS------------T------KS  496 (565)
T ss_pred             hhccChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccCCCHHHHHHHHHHHHHHhhh------------h------cc
Confidence            99999999999999999999999999999999988877778999888888777665321            0      01


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhcccCCCCCHHHhHHHHH
Q 004334          557 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA  623 (760)
Q Consensus       557 l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~~LdP~~d~~~~a~P~~  623 (760)
                              .+..++++++.+++.++++|++++.++|+.++-+++++||.+|+|||++|++....+|+
T Consensus       497 --------l~tl~i~~ll~em~tmvreH~V~ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~~~~l  555 (565)
T KOG1236|consen  497 --------LRTLNIGDLLSEMFTMVREHHVRIDSNFTTVVLSILVLEGFGRQLDPDLDLFQLRTFLL  555 (565)
T ss_pred             --------cCcCcHHHHHHHHHHHHHHhheeeccchHHHHHHHHHHhhhccccCCCcchhhhHHHHH
Confidence                    12357899999999999999999999999999999999999999999999999444443

>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=291.05  Aligned_cols=342  Identities=23%  Similarity=0.310  Sum_probs=273.4

Q ss_pred             hhcC-cccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE-CCeeEEEEEe
Q 004334          247 FSTR-VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQ  324 (760)
Q Consensus       247 lStR-~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l-~G~~VAVKVq  324 (760)
                      ||-+ ..++|+...+.|++.++.+..||..++.+++..++|.+|.+-|++||+.|.+++||||||+|++ +|.+||||+|
T Consensus         2 LSiQD~~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~g~eVavKiQ   81 (363)
T KOG1234|consen    2 LSIQDGSLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLADGPEVAVKIQ   81 (363)
T ss_pred             cccccCCccCHHHHHHHHHhcCccccCChhhhhHHHhhhhchhHHHHHHhhccCccccccHHHHHHHHhcCCCeeeeecC
Confidence            4444 3589999999999999999999999999999999999999999999999999999999999999 7999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH------HHHHHHHHHHHHHHhcCCCCceeeceeee
Q 004334          325 RPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS------VLYQEAANAELFASNFKDMDYVKVPTIFW  398 (760)
Q Consensus       325 rPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~------~l~~EA~nl~~f~~~~~~~~~V~VP~vy~  398 (760)
                      +||+.+.|+.|+..+..++++-.-+ |+..+    +...++-..+      .+.+||..+.+|+..+++++.+++|.|+.
T Consensus        82 YPGva~sI~SD~~nl~~lLn~s~ll-PkGLF----Ld~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~  156 (363)
T KOG1234|consen   82 YPGVARSIDSDANNLSRLLNFSGLL-PKGLF----LDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVD  156 (363)
T ss_pred             CCchhhhccCcHHHHHHHHhhcccc-ccccc----HHHHHHHHHHhcccccchHHHHHHHhhhHHHhcCCCCcchhHHHH
Confidence            9999999999999999998865433 33211    1111111111      25678999999999999999999999999


Q ss_pred             ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          399 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       399 e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                      ++||.++++||++.|.+|.....+.+  ..+..++..+++.+|+.||...|++.||+.+|++++. ...+|.|+|||.++
T Consensus       157 Elct~rvlt~el~~G~pid~~~~~sQ--~~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~-~tk~i~LlDFGAsr  233 (363)
T KOG1234|consen  157 ELCTVRVLTLELGQGLPIDKTAKLSQ--ETRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNG-RTKKIELLDFGASR  233 (363)
T ss_pred             hhccchhhhhhhhcCccchhhhcccH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhccCC-CcceEEEEeccccc
Confidence            99999999999999999987654332  4578899999999999999999999999999999986 46789999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCc
Q 004334          479 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLS  558 (760)
Q Consensus       479 ~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~  558 (760)
                      .++.++-..|++++.+...+|.+.+.+.-.++|+++...  ...      |.+...+.... ..+.-...+.+.|++   
T Consensus       234 ~y~~~F~d~Y~~~~~aaa~~dr~~v~e~S~~lgfLtg~E--s~~------m~DAHv~sv~i-lgepfa~~~pydF~~---  301 (363)
T KOG1234|consen  234 EYGEKFIDKYIRLLKAAADRDREGVIEMSRELGFLTGYE--SKV------MEDAHVESVMI-LGEPFASDGPYDFGD---  301 (363)
T ss_pred             cccHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccccch--HHH------HHHHhhhHhhh-ccccccCCCCcCcCc---
Confidence            999999999999999999999999999999999987532  111      11111110000 000000112233332   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc-hhhhhhhhhhhHHhhhcccCCCCCHHH
Q 004334          559 KEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA-TFTFVVRAFSVLDGIGKGLDPRFDITE  617 (760)
Q Consensus       559 ~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~-~~~~l~Ral~~lEGi~~~LdP~~d~~~  617 (760)
                               ..+..-++++..++.+|++..|| +-..+.|.+...-=+|..|...+.-.+
T Consensus       302 ---------q~~t~ri~~lipvmL~hRL~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~  352 (363)
T KOG1234|consen  302 ---------QTVTDRIQNLIPVMLRHRLCPPPEETYSLHRKLSGAFLLCAKLGATVPCRD  352 (363)
T ss_pred             ---------cHHHHHHHhhhHHHHhccCCCCcHHHHHHHHHhhhHHHHHHHhcCCCcHHH
Confidence                     34555567778888899998776 677799999888888888887776543

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=99.89  E-value=1.3e-23  Score=196.84  Aligned_cols=112  Identities=50%  Similarity=0.811  Sum_probs=104.3

Q ss_pred             HHhCCChhhhhcccCccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchH
Q 004334          283 EELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV  361 (760)
Q Consensus       283 ~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~  361 (760)
                      ++||.+++++|++||++|+||||+||||+|++ +|++||||||||++.+.+..|+.+|+.++++++++.+..   ..++.
T Consensus         1 e~lG~~~~~~F~~fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~---~~~~~   77 (119)
T PF03109_consen    1 EELGKPIDEIFDEFDPEPLASASIAQVHRARLKDGEEVAVKVQRPGIEEQIEADLRILRRLARLLERLPPFR---RLDLE   77 (119)
T ss_pred             CCcCCCHHHHHHHCCcchhhheehhhheeeeecccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHccccc---ccCHH
Confidence            47999999999999999999999999999999 799999999999999999999999999999999887653   57899


Q ss_pred             HHHHHHHHHHH------HHHHHHHHHHHhcCCCCceeeceee
Q 004334          362 AIYDECASVLY------QEAANAELFASNFKDMDYVKVPTIF  397 (760)
Q Consensus       362 ~i~~E~~~~l~------~EA~nl~~f~~~~~~~~~V~VP~vy  397 (760)
                      .+++|+...+.      +||+|+++|++++++.+.++||+||
T Consensus        78 ~~~~e~~~~l~~ElDf~~Ea~n~~~~~~~~~~~~~v~vP~vy  119 (119)
T PF03109_consen   78 EIVDEFRDSLLEELDFRREAANLERFRKNFADSPRVYVPKVY  119 (119)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCEecCCCC
Confidence            99999988876      4699999999999999999999987

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.79  E-value=7.9e-19  Score=176.64  Aligned_cols=180  Identities=17%  Similarity=0.173  Sum_probs=118.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+||+|++||||+|++ +|+.||||+.+|+.... ..+...+.....+...      ....++..+..+   .+..|.++
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~E~~~   72 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSF-KDRDKYIEGDPRFRSR------YSKSNPRKLVFA---WAEKEFRN   72 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceE-eeHHHHhcCCcccccc------cccCCHHHHHHH---HHHHHHHH
Confidence            5899999999999999 69999999999985321 1111111110000000      001233333333   34579999


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCC---HHHHHHHHHHHHHHHHHh-CCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAVESYLEQILS-HGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d---~~~la~~lv~~~L~qI~~-~GffHaD  453 (760)
                      +.++..     +++.+|.++..  ...+|||||++|..+.... +.....+   ...++..++. .+.++|. .|++|+|
T Consensus        73 l~~l~~-----~~i~~p~~~~~--~~~~lVmE~~~g~~~~~~~-l~~~~~~~~~~~~i~~~l~~-~l~~lH~~~givHrD  143 (190)
T cd05145          73 LKRLYE-----AGVPVPEPILL--KKNVLVMEFIGDDGSPAPR-LKDVPLEEEEAEELYEQVVE-QMRRLYQEAGLVHGD  143 (190)
T ss_pred             HHHHHh-----CCCCCceEEEe--cCCEEEEEEecCCCchhhh-hhhccCCHHHHHHHHHHHHH-HHHHHHHhCCEecCC
Confidence            999854     45778888753  3569999999998543321 1222333   2344444443 3677888 9999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  507 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l  507 (760)
                      |||+||+++   +++++|+|||++..++...       ..+++.+|++.+...+
T Consensus       144 lkP~NIll~---~~~~~liDFG~a~~~~~~~-------~~~~~~~~~~~~~~~~  187 (190)
T cd05145         144 LSEYNILYH---DGKPYIIDVSQAVELDHPN-------ALEFLRRDIRNINRFF  187 (190)
T ss_pred             CChhhEEEE---CCCEEEEEcccceecCCCC-------HHHHHHHHHHHHHHHh
Confidence            999999997   5889999999999998752       2345677877776654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.78  E-value=2.2e-18  Score=186.43  Aligned_cols=187  Identities=17%  Similarity=0.160  Sum_probs=134.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-||+||||.||+|++  +|..||||...-.                                  .+-.+..+.+..|.+
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~----------------------------------~l~~k~~e~L~~Ei~   61 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKK----------------------------------KLNKKLVELLLSEIK   61 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehhh----------------------------------ccCHHHHHHHHHHHH
Confidence            4499999999999999  6999999964331                                  001122334556766


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH--HHHHHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR--LGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~--la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      .++.+.    |..-|.+-.+. +..+..+||||||+|++|+++..... .+++..  .--..+...++.+|+.+++|+|+
T Consensus        62 iLkel~----H~nIV~l~d~~-~~~~~i~lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDL  135 (429)
T KOG0595|consen   62 ILKELK----HPNIVRLLDCI-EDDDFIYLVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLHENNIIHRDL  135 (429)
T ss_pred             HHHhcC----CcceeeEEEEE-ecCCeEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeccC
Confidence            676663    32334444444 45567899999999999999865332 233221  11122334577789999999999


Q ss_pred             CCCcEEEecc-CC---CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NG---GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~-~~---g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||+... .+   -.+++.|||+++.+.+..       +...+.|.+-+|++++...+-.+.+.|+++++.+++.++
T Consensus       136 KPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~-------~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l  208 (429)
T KOG0595|consen  136 KPQNILLSTTARNDTSPVLKIADFGFARFLQPGS-------MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCL  208 (429)
T ss_pred             CcceEEeccCCCCCCCceEEecccchhhhCCchh-------HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHH
Confidence            9999999852 11   369999999999998643       234456899999999999888899999999999887776


Q ss_pred             HH
Q 004334          531 NS  532 (760)
Q Consensus       531 ~~  532 (760)
                      ..
T Consensus       209 ~g  210 (429)
T KOG0595|consen  209 TG  210 (429)
T ss_pred             hC
Confidence            54

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.77  E-value=7.4e-18  Score=170.24  Aligned_cols=164  Identities=15%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ..||+|++|+||+|.+ +|++||||+.+++.......| ..+....++..      .....++..+..++   ...|+++
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~E~~~   72 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRD-RYVSGEFRFRH------GYCKSNPRKMVRTW---AEKEMRN   72 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHH-HhhcCCchhhc------cccCCCHHHHHHHH---HHHHHHH
Confidence            4799999999999998 799999999999754332222 11100011000      00123444444333   3579999


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHH-HhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI-LSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI-~~~GffHaDp  454 (760)
                      +.++..     +++..|.++.  +...+|||||++|..+.... +....++...+.....  ...+.++ |..|++|+||
T Consensus        73 l~~l~~-----~~v~~p~~~~--~~~~~iVmE~i~g~~l~~~~-~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDl  144 (190)
T cd05147          73 LKRLVT-----AGIPCPEPIL--LKSHVLVMEFIGDDGWAAPR-LKDAPLSESKARELYLQVIQIMRILYQDCRLVHADL  144 (190)
T ss_pred             HHHHHH-----CCCCCCcEEE--ecCCEEEEEEeCCCCCcchh-hhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            999864     2345566653  34569999999997665432 2233455555554443  3557788 6899999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ||+||+++   +++++|+|||++...+..
T Consensus       145 kP~NIli~---~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         145 SEYNLLYH---DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             CHHHEEEE---CCcEEEEEccccccCCCc
Confidence            99999997   478999999999866543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>smart00090 RIO RIO-like kinase

Probab=99.69  E-value=1.9e-16  Score=165.42  Aligned_cols=186  Identities=18%  Similarity=0.186  Sum_probs=127.3

Q ss_pred             cccccccccEEEEEE-E--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRAR-L--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~-l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      ++||.|++|+||+|+ .  +|++||||+.+++..+.-..+.        +.... +.......++..   +....+..|+
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~---~~~~~~~~E~  101 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDR--------YVDGD-FRFKYRKINPRK---LVRLWAEKEF  101 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhh--------hcccc-hhhccCCCCHHH---HHHHHHHHHH
Confidence            589999999999999 3  6999999999886533211100        00000 000000112222   2233467899


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHhCC-ccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILSHG-FFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~---~~la~~lv~~~L~qI~~~G-ffH  451 (760)
                      +++.++...     .+.+|+++..  +..+|||||++|.++..... .....+.   ..++..++ .++.++|.+| ++|
T Consensus       102 ~~L~~L~~~-----~i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~-~~~~~~~~~~~~i~~qi~-~~l~~LH~~g~iiH  172 (237)
T smart00090      102 RNLQRLYEA-----GVPVPKPIAW--RRNVLVMEFIGGDGLPAPRL-KDVEPEEEEEFELYDDIL-EEMRKLYKEGELVH  172 (237)
T ss_pred             HHHHHHHhc-----CCCCCeeeEe--cCceEEEEEecCCccccccc-ccCCcchHHHHHHHHHHH-HHHHHHHhcCCEEe
Confidence            999999642     4678888853  45699999999988765431 1112222   23444333 5588899999 999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                      +|+||+||+++   +++++|+|||++...++...       .++..+|.+.+...+.+.|..+.
T Consensus       173 ~Dikp~NIli~---~~~i~LiDFg~a~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~  226 (237)
T smart00090      173 GDLSEYNILVH---DGKVVIIDVSQSVELDHPMA-------LEFLERDIRNIIRFFRRKGVDEL  226 (237)
T ss_pred             CCCChhhEEEE---CCCEEEEEChhhhccCCcch-------HHHHHHHHHHHHHHHHHcCCCcC
Confidence            99999999997   57899999999998887654       35578999999999999998543

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-15  Score=159.76  Aligned_cols=189  Identities=18%  Similarity=0.234  Sum_probs=135.0

Q ss_pred             cccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      +.|+. ..+|.||||.||..+.  +|.-+|+|+..-+       ++--|+.+                          +.
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~-------~vVklKQv--------------------------eH   90 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ-------KVVKLKQV--------------------------EH   90 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHH-------HHHHHHHH--------------------------HH
Confidence            45553 6899999999999999  5999999986431       11111111                          12


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHHHHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~lv~~~L~qI~~~  447 (760)
                      ..+|-+.+....     +|.  +-+.++  ...+..+|||||++|+.|..+..- ........+.-..-+-..++.||..
T Consensus        91 ~~nEk~vL~~v~-----~PF--lv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~  163 (355)
T KOG0616|consen   91 THNEKRVLKAVS-----HPF--LVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSL  163 (355)
T ss_pred             HhhHHHHHhhcc-----Cce--eEEEEEeeccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhc
Confidence            334444444331     121  222222  234567999999999999987542 2222233344444455678999999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      ++++||+||+|||++.  +|.|++.|||.+++++..+-         .+.+++++++++.+...-....+|-++++..++
T Consensus       164 ~iiYRDLKPENiLlD~--~G~iKitDFGFAK~v~~rT~---------TlCGTPeYLAPEii~sk~ynkavDWWalGVLIY  232 (355)
T KOG0616|consen  164 DIIYRDLKPENLLLDQ--NGHIKITDFGFAKRVSGRTW---------TLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIY  232 (355)
T ss_pred             CeeeccCChHHeeecc--CCcEEEEeccceEEecCcEE---------EecCCccccChHHhhcCCCCcchhHHHHHHHHH
Confidence            9999999999999986  89999999999999987632         246899999999999877788899999999998


Q ss_pred             HHHHHH
Q 004334          528 FFLNSF  533 (760)
Q Consensus       528 ~~l~~~  533 (760)
                      +|+..|
T Consensus       233 EMlaG~  238 (355)
T KOG0616|consen  233 EMLAGY  238 (355)
T ss_pred             HHHcCC
Confidence            887664

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.68  E-value=9.4e-16  Score=154.84  Aligned_cols=170  Identities=22%  Similarity=0.263  Sum_probs=115.7

Q ss_pred             ccccccccccEEEEEEE-CCeeEEEEEecCCchhh--HHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~--i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .++|+.|++|+||+|.. +|+.||||+.+++....  +..+.+       ....      .   ...............|
T Consensus        20 ~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~-------~~~~------~---~~~~~~~~~~~~~~~E   83 (198)
T cd05144          20 GNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRD-------YLGD------R---KHASWLYLSRLAAQKE   83 (198)
T ss_pred             CCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHH-------HHhc------c---ccchhHHHhHHHHHHH
Confidence            36899999999999999 79999999987754111  110000       0000      0   0011112222334567


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      ...+..+..     ..+.+|.++.  ....++||||++|.++.++...    .....++..++.. +.++|..|++|+|+
T Consensus        84 ~~~l~~l~~-----~~i~v~~~~~--~~~~~lv~e~~~g~~L~~~~~~----~~~~~~~~~i~~~-l~~lh~~gi~H~Dl  151 (198)
T cd05144          84 FAALKALYE-----EGFPVPKPID--WNRHAVVMEYIDGVELYRVRVL----EDPEEVLDEILEE-IVKAYKHGIIHGDL  151 (198)
T ss_pred             HHHHHHHHH-----cCCCCCceee--cCCceEEEEEeCCcchhhcccc----ccHHHHHHHHHHH-HHHHHHCCCCcCCC
Confidence            777777743     2256777775  3566999999999998875321    2334555555443 57789999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHH----HHHHHHHhh
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL----LEAFYGIYE  497 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l----~~l~~al~~  497 (760)
                      ||+||++++  +++++|+|||++..++.+.++.+    ...++++++
T Consensus       152 ~p~Nill~~--~~~~~liDfg~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (198)
T cd05144         152 SEFNILVDD--DEKIYIIDWPQMVSTDHPNAEELLDRDVENILRFFR  196 (198)
T ss_pred             CcccEEEcC--CCcEEEEECCccccCCCccHHHHHHHHHHHHHHHHh
Confidence            999999985  78999999999999999888876    555555543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.67  E-value=6.6e-16  Score=160.31  Aligned_cols=141  Identities=18%  Similarity=0.316  Sum_probs=102.1

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH--HHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC--ASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~--~~~l~~EA~  376 (760)
                      ++++.|.+|.||.+..++..+|||+.+|.....   +                          .....+  ...+.+||+
T Consensus        37 ~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~---~--------------------------~~~~~f~~g~~~e~Ea~   87 (232)
T PRK10359         37 KVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRT---E--------------------------RFLKSFVKGDYYENLIV   87 (232)
T ss_pred             EEecCCCceEEEEEecCCCcEEEEEechhcCch---H--------------------------HHHHhhhhhHHHHHHHH
Confidence            689999999999977778899999999864322   0                          000000  122467888


Q ss_pred             HHHHHHHhcCCCCceeeceeee--------ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--------e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~G  448 (760)
                      ++.++.+     +++..|..+.        .+++..+|||||++|.+|.++...     +. ... ..+..++.++|.+|
T Consensus        88 ~l~rL~~-----~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~-----~~-~~~-~~i~~~l~~lH~~g  155 (232)
T PRK10359         88 QTDRVRS-----EGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEI-----SE-DVK-AKIKASIESLHQHG  155 (232)
T ss_pred             HHHHHHH-----CCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhhc-----cH-HHH-HHHHHHHHHHHHcC
Confidence            9998843     3445555441        235678999999999999886432     12 222 24455689999999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ++|+||||+||++++  +| ++|+|||.+.....+
T Consensus       156 i~H~Dikp~Nili~~--~g-i~liDfg~~~~~~e~  187 (232)
T PRK10359        156 MVSGDPHKGNFIVSK--NG-LRIIDLSGKRCTAQR  187 (232)
T ss_pred             CccCCCChHHEEEeC--CC-EEEEECCCcccccch
Confidence            999999999999985  67 999999999887543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.66  E-value=6.6e-16  Score=165.88  Aligned_cols=177  Identities=16%  Similarity=0.213  Sum_probs=124.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-||+|+-|.||++++  +|+.+|+|+.+-++...                                   +.+++.+|.+
T Consensus        85 ~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~-----------------------------------~~~Qi~rEl~  129 (364)
T KOG0581|consen   85 GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPA-----------------------------------LQKQILRELE  129 (364)
T ss_pred             hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHH-----------------------------------HHHHHHHHHH
Confidence            5799999999999999  59999999985543322                                   2334445544


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCC-CeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH---HHHHHHh-CCcc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQILS-HGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st-~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~---~L~qI~~-~Gff  450 (760)
                      .+.++     +.++ |.+-..+.. .. ...++||||+|++|+++.... ..+....++. ++..   -|.++|. ++++
T Consensus       130 il~~~-----~spyIV~~ygaF~~-~~~~isI~mEYMDgGSLd~~~k~~-g~i~E~~L~~-ia~~VL~GL~YLh~~~~II  201 (364)
T KOG0581|consen  130 ILRSC-----QSPYIVGFYGAFYS-NGEEISICMEYMDGGSLDDILKRV-GRIPEPVLGK-IARAVLRGLSYLHEERKII  201 (364)
T ss_pred             HHhhC-----CCCCeeeEeEEEEe-CCceEEeehhhcCCCCHHHHHhhc-CCCCHHHHHH-HHHHHHHHHHHHhhccCee
Confidence            44443     2222 233333321 23 478999999999999975421 2233333333 2222   3677884 9999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      |||+||.||||+.  .|.++|+|||..+.+...    ++..    ..++..+|+++-++.+..+-..|+|+|+-.+-+
T Consensus       202 HRDIKPsNlLvNs--kGeVKicDFGVS~~lvnS----~a~t----fvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE  269 (364)
T KOG0581|consen  202 HRDIKPSNLLVNS--KGEVKICDFGVSGILVNS----IANT----FVGTSAYMSPERISGESYSVKSDIWSLGLSLLE  269 (364)
T ss_pred             eccCCHHHeeecc--CCCEEeccccccHHhhhh----hccc----ccccccccChhhhcCCcCCcccceecccHHHHH
Confidence            9999999999986  899999999999998765    3333    357889999999988888888999999865433

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.65  E-value=1.5e-15  Score=167.83  Aligned_cols=185  Identities=19%  Similarity=0.178  Sum_probs=137.2

Q ss_pred             ccccccccEEEEEEECCee-EEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       300 PIasaSiGQVhrA~l~G~~-VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      -+|+|++|+||+|.++|+. ||||+..+.-...                                  +....+.+|+..+
T Consensus        48 ~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~----------------------------------~~~~~f~~E~~il   93 (362)
T KOG0192|consen   48 VLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDD----------------------------------ESRKAFRREASLL   93 (362)
T ss_pred             hcccCCceeEEEEEeCCceeEEEEEecchhcCh----------------------------------HHHHHHHHHHHHH
Confidence            3999999999999999998 9999877632111                                  0144567888888


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHHHHH--HHHHHHhCC-ccccCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVES--YLEQILSHG-FFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~lv~~--~L~qI~~~G-ffHaDp  454 (760)
                      .++    +|.+-|.+..++.+-.....|||||++|++|.++... ....++.........+.  .+..+|..+ ++|+|+
T Consensus        94 ~~l----~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDL  169 (362)
T KOG0192|consen   94 SRL----RHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDL  169 (362)
T ss_pred             HhC----CCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeeccc
Confidence            875    3444455555553333347999999999999998765 34556666655555443  478899999 999999


Q ss_pred             CCCcEEEeccCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g-~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~--lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++ .++++|||+++......      ....-..+++..|++++++  -...+...|++++.-.+-+++
T Consensus       170 K~~NiLv~~--~~~~~KI~DFGlsr~~~~~~------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~  240 (362)
T KOG0192|consen  170 KSDNILVDL--KGKTLKIADFGLSREKVISK------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELL  240 (362)
T ss_pred             ChhhEEEcC--CCCEEEECCCccceeecccc------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHH
Confidence            999999986  65 89999999998776532      0111156889999999999  557788899999987665554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.65  E-value=1e-15  Score=170.33  Aligned_cols=233  Identities=19%  Similarity=0.258  Sum_probs=150.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-+|.||+.+|++|+.  +++.+||||....                 ++-+      ..+...          +..|-.
T Consensus        79 ~~lGeGSYStV~~A~~~~t~keYAiKVl~K~-----------------~Iik------e~KvkY----------V~~Ek~  125 (604)
T KOG0592|consen   79 KILGEGSYSTVVLAREKATGKEYAIKVLDKR-----------------YIIK------EKKVKY----------VTREKE  125 (604)
T ss_pred             heeccccceeEEEeeecCCCceeeHhhhhHH-----------------HHHh------hcccch----------hhHHHH
Confidence            4699999999999999  5999999985331                 0000      001111          123434


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhh-hhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~-l~~~g~d~~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      .|.++.    ++|.|  -+.|..  .....|.|+||++++.|-+++. .........+.-...+-..++.||.+|++|||
T Consensus       126 ~l~~L~----~hPgi--vkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRD  199 (604)
T KOG0592|consen  126 ALTQLS----GHPGI--VKLYFTFQDEESLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRD  199 (604)
T ss_pred             HHHHhh----CCCCe--EEEEEEeecccceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceecc
Confidence            444443    44443  344433  3456799999999999988653 22211222222222333458999999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHH-------HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-------LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~-------l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      +||+|||++.  |++++|.|||.++.+++.....       ...-=.+-+.|+.++|.++++.-+..++..|+|+|.=++
T Consensus       200 lKPENILLd~--dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCil  277 (604)
T KOG0592|consen  200 LKPENILLDK--DGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCIL  277 (604)
T ss_pred             CChhheeEcC--CCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHH
Confidence            9999999986  9999999999999998875541       011101234578899999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhh
Q 004334          527 QFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV  601 (760)
Q Consensus       527 ~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~  601 (760)
                      +.|+..                 ...|... +           =--+++.++.+.++.+--+|+...-|++-+++
T Consensus       278 yQmlaG-----------------~PPFra~-N-----------eyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv  323 (604)
T KOG0592|consen  278 YQMLAG-----------------QPPFRAA-N-----------EYLIFQKIQALDYEFPEGFPEDARDLIKKLLV  323 (604)
T ss_pred             HHHhcC-----------------CCCCccc-c-----------HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHc
Confidence            776643                 1112211 0           01245666666666555566665556555543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.63  E-value=2.6e-15  Score=167.22  Aligned_cols=196  Identities=19%  Similarity=0.274  Sum_probs=127.0

Q ss_pred             ccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +|+. ++||-|.||+||.|+-  +|..+|+|+.+.       +++--+..+.                          .+
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK-------S~M~~~~Qv~--------------------------hV  188 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK-------SEMLKKNQVE--------------------------HV  188 (550)
T ss_pred             cchhheeeccccceeEEEEEEccCCcEEeeecccH-------HHHHhhhhHH--------------------------HH
Confidence            4553 8999999999999998  699999998765       1221111111                          11


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHH-HHHH--HHHHHHHh
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGR-YAVE--SYLEQILS  446 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~-~lv~--~~L~qI~~  446 (760)
                      +.|-..+.       ....-.|-+.|..+.  ...||+|||++|+.+..++..  .+.-+...++ .+++  .++.-||.
T Consensus       189 ~aERdiL~-------~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~--~~~L~e~~arfYiaE~vlAI~~iH~  259 (550)
T KOG0605|consen  189 RAERDILA-------EVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMR--KDTLTEDWARFYIAETVLAIESIHQ  259 (550)
T ss_pred             HHHHHHhh-------hcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHh--cCcCchHHHHHHHHHHHHHHHHHHH
Confidence            22222222       122234455665443  456999999999998876431  2222222221 2222  23677999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH----------------------------------HHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL----------------------------------LEAF  492 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l----------------------------------~~l~  492 (760)
                      +|++|+|+||.|+||+.  .|.|+|.|||++.-+....+..+                                  ...+
T Consensus       260 ~gyIHRDIKPdNlLiD~--~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  337 (550)
T KOG0605|consen  260 LGYIHRDIKPDNLLIDA--KGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTW  337 (550)
T ss_pred             cCcccccCChhheeecC--CCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHH
Confidence            99999999999999986  89999999999865433222111                                  1111


Q ss_pred             -------HHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Q 004334          493 -------YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE  534 (760)
Q Consensus       493 -------~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~  534 (760)
                             ..-..|++++|+++++.---.....|-++++-+++++|-.|.
T Consensus       338 ~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyP  386 (550)
T KOG0605|consen  338 KRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYP  386 (550)
T ss_pred             HhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCC
Confidence                   111358899999998765445778899999999988887663

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.62  E-value=5.3e-15  Score=146.92  Aligned_cols=164  Identities=23%  Similarity=0.277  Sum_probs=106.7

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ++||+|++|+||+|++ +|++||||+.+|+.......+..++   .......      ...++..+...   ....|..+
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~---~~~~e~~~   70 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRT---GDYRFGR------KKSNWRYLSRL---WAEKEFRN   70 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhH---HHHHhcc------CCcchhhhhhH---HHHHHHHH
Confidence            4799999999999999 5999999999987544322222111   0111110      11222222221   22356667


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCC-----chhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh-CCccc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-----KINRIQSLDELGVDRKRLGRYAVESYLEQILS-HGFFH  451 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~-----~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~-~GffH  451 (760)
                      +.++...     .+.+|+++.  +...+|+|||++|.     .+.+....    .....++..++ ..+..+|. .|++|
T Consensus        71 l~~l~~~-----~~~~~~~~~--~~~~~lv~e~~~g~~~~~~~l~~~~~~----~~~~~~~~~~~-~~l~~lh~~~~ivH  138 (187)
T cd05119          71 LKRLYEA-----GVPVPKPID--LNRHVLVMEFIGGDGIPAPRLKDVRLL----EDPEELYDQIL-ELMRKLYREAGLVH  138 (187)
T ss_pred             HHHHHHc-----CCCCCceEe--cCCCEEEEEEeCCCCccChhhhhhhhc----ccHHHHHHHHH-HHHHHHhhccCcCc
Confidence            7776542     356787774  35679999999994     33332110    22333444433 44677888 99999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL  489 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~  489 (760)
                      +|+||+||+++   ++.++++|||++...+.+....+.
T Consensus       139 ~Dl~p~Nili~---~~~~~liDfg~a~~~~~~~~~~~~  173 (187)
T cd05119         139 GDLSEYNILVD---DGKVYIIDVPQAVEIDHPNAEEFL  173 (187)
T ss_pred             CCCChhhEEEE---CCcEEEEECcccccccCcchHHHH
Confidence            99999999997   688999999999999887766554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.61  E-value=1.7e-15  Score=173.15  Aligned_cols=193  Identities=18%  Similarity=0.199  Sum_probs=136.9

Q ss_pred             cccCccccccccccEEEEEEE--CCeeEEEEEecCCc----hhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          294 ERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGL----KDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       294 ~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi----~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      .++..+-+|.|.+|+||+++.  +|+.||||+.++..    .+..-                                  
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~----------------------------------   59 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWC----------------------------------   59 (732)
T ss_pred             ceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHH----------------------------------
Confidence            344556899999999999997  69999999876621    12222                                  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC-Cceeeceeee--ccCCCeEEEEeecCCCchhhhhhh--hhcCCCHHHHHHHHH--HHH
Q 004334          368 ASVLYQEAANAELFASNFKDM-DYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAV--ESY  440 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~-~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l--~~~g~d~~~la~~lv--~~~  440 (760)
                           .|...++++.  +++. ..+.||..-.  --+...||+||||.|++|......  ...|+...++...+.  ...
T Consensus        60 -----~EieilkKLn--h~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~a  132 (732)
T KOG4250|consen   60 -----REIEILKKLN--HPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSA  132 (732)
T ss_pred             -----HHHHHHHHcC--chhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHH
Confidence                 2333333331  1110 1112222111  124567999999999999987643  345666666666553  455


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCC
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTG  517 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~--l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~  517 (760)
                      ++.++++|++|||+|||||++-...+|+  -+|+|||.++.+++...       ..-+.|+.+++.+.+.+ -+..+..+
T Consensus       133 l~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~-------~~S~vGT~~YLhPel~E~q~~y~~tV  205 (732)
T KOG4250|consen  133 LRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSL-------FTSLVGTEEYLHPELYERQKKYTATV  205 (732)
T ss_pred             HHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCe-------eeeecCchhhcChHHHhhccCcCcee
Confidence            8889999999999999999987644565  58999999999998761       22345899999999999 48888899


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFLNSFE  534 (760)
Q Consensus       518 D~~al~~~~~~~l~~~~  534 (760)
                      |.++++-.+++....+.
T Consensus       206 DLWS~GvtlY~caTG~l  222 (732)
T KOG4250|consen  206 DLWSFGVTLYECATGEL  222 (732)
T ss_pred             ehhhhhhHHHHHhccCC
Confidence            99999999888766543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.61  E-value=3.6e-15  Score=160.17  Aligned_cols=191  Identities=18%  Similarity=0.230  Sum_probs=132.0

Q ss_pred             cccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      +.|+. +.||.||||+|+..+.  +|+-+|+||.+..                .++++                .| .+.
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~----------------~iv~~----------------~e-~~~   71 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK----------------KIVEK----------------KE-VRH   71 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh----------------Hhhhh----------------hh-HHH
Confidence            45654 7899999999999998  5999999986541                11100                11 123


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceee-eccCCCeEEEEeecCCCchhhhhh-hhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIF-WEYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESYLEQILSHG  448 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy-~e~st~~vLVME~ieG~~L~d~~~-l~~~g~d~~~la~~lv~~~L~qI~~~G  448 (760)
                      +..|...++++     ++|. .|.-.| ++-..+.+||+||+.|+.|.-.+. ......++.++--.-+...+..+|+.|
T Consensus        72 ~~~Er~IL~~v-----~hPF-iv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~g  145 (357)
T KOG0598|consen   72 TKAERNILSKI-----KHPF-IVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKG  145 (357)
T ss_pred             HHHHHHHHHhC-----CCCc-EeeeEEecccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCC
Confidence            34455555543     2332 233333 233456799999999999875332 222333444443334456689999999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~-l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      ++|||+||+|||++.  +|.++|.|||+++. +.......       -+.+++++|+++++.-.-....+|-++++..++
T Consensus       146 IiyRDlKPENILLd~--~GHi~LtDFgL~k~~~~~~~~t~-------tfcGT~eYmAPEil~~~gy~~~vDWWsLGillY  216 (357)
T KOG0598|consen  146 IIYRDLKPENILLDE--QGHIKLTDFGLCKEDLKDGDATR-------TFCGTPEYMAPEILLGKGYDKAVDWWSLGILLY  216 (357)
T ss_pred             eeeccCCHHHeeecC--CCcEEEeccccchhcccCCCccc-------cccCCccccChHHHhcCCCCcccchHhHHHHHH
Confidence            999999999999986  89999999999984 33322211       145899999999988777788999999999888


Q ss_pred             HHHHH
Q 004334          528 FFLNS  532 (760)
Q Consensus       528 ~~l~~  532 (760)
                      +|+..
T Consensus       217 eML~G  221 (357)
T KOG0598|consen  217 EMLTG  221 (357)
T ss_pred             HHhhC
Confidence            87643

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.60  E-value=8.8e-15  Score=160.87  Aligned_cols=190  Identities=17%  Similarity=0.164  Sum_probs=124.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..-..                                 -.+....+..|..
T Consensus         7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~~~~~E~~   53 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADML---------------------------------EKEQVGHIRAERD   53 (363)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHH---------------------------------HhhHHHHHHHHHH
Confidence            6799999999999998  5899999987541000                                 0011123344544


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++     +++  .+++.+..  .....+|||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        54 il~~~-----~~~--~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~givHr  125 (363)
T cd05628          54 ILVEA-----DSL--WVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK-DTLTEEETQFYIAETVLAIDSIHQLGFIHR  125 (363)
T ss_pred             HHHhC-----CCC--CcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEec
Confidence            44443     222  23444432  234579999999999998865322 223333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhhcCHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYEKDADKV  503 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l-----------------------------~~al~~~D~~~v  503 (760)
                      |+||.|||++.  ++.++|+|||++..+....+..+...                             ...-..++..++
T Consensus       126 DlKp~NILi~~--~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~  203 (363)
T cd05628         126 DIKPDNLLLDS--KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYI  203 (363)
T ss_pred             CCCHHHeEECC--CCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCcccc
Confidence            99999999985  78999999999987654322111000                             001124677888


Q ss_pred             HHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          504 LQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       504 ~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +++++..+..+...|+++++-.+.+++.
T Consensus       204 aPE~~~~~~~~~~~DvwSlGvil~ell~  231 (363)
T cd05628         204 APEVFMQTGYNKLCDWWSLGVIMYEMLI  231 (363)
T ss_pred             CHHHHcCCCCCCchhhhhhHHHHHHHHh
Confidence            9998877667788999999988776654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=2.1e-14  Score=145.31  Aligned_cols=144  Identities=19%  Similarity=0.309  Sum_probs=106.2

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH-HHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC-ASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~-~~~l~~EA~n  377 (760)
                      ++||.|++|.||+|+..|..|+||+..|.....-..|                             ... ...+.+|+++
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~-----------------------------~~~~~~~~~~E~~~   52 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELD-----------------------------ERIRRERTRREARI   52 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHH-----------------------------HHHHHHHHHHHHHH
Confidence            4789999999999999999999999877432211111                             111 1234567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPG  457 (760)
                      +..+..     +++.+|.++....+..+++|||++|.+|.++......  ....++..+. ..+.++|..|++|+|+||+
T Consensus        53 l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~--~~~~i~~~i~-~~l~~lH~~~i~H~Dl~p~  124 (211)
T PRK14879         53 MSRARK-----AGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGM--EELELSREIG-RLVGKLHSAGIIHGDLTTS  124 (211)
T ss_pred             HHHHHH-----CCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccH--HHHHHHHHHH-HHHHHHHhCCcccCCCCcc
Confidence            777643     4578888887677788999999999999987542211  3334444443 4588999999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccCh
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      ||+++   ++.++++|||.++..++
T Consensus       125 Nil~~---~~~~~liDf~~a~~~~~  146 (211)
T PRK14879        125 NMILS---GGKIYLIDFGLAEFSKD  146 (211)
T ss_pred             cEEEE---CCCEEEEECCcccCCCc
Confidence            99997   57899999999887543

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.3e-15  Score=165.10  Aligned_cols=194  Identities=18%  Similarity=0.204  Sum_probs=127.8

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.+|+|.||.|-.|..  +|+.||||+.+..--.                        +...   ..-..  ....+|+
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~------------------------~~s~---~~~~~--~~v~~Ei  227 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKST------------------------GCSR---AIAKT--RDVQNEI  227 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcc------------------------cccc---cccch--hhhHHHH
Confidence            46899999999999998  6999999997652100                        0000   00000  1145677


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhh-hhhcCCCH-HHHHHHHHHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS-LDELGVDR-KRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~-l~~~g~d~-~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      ..|+++     ++|.|.--+-+.+-....||||||++|+.|.|... ....+.+. +.+...++ ..++++|+.|+.|||
T Consensus       228 eILkkL-----~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll-~avkYLH~~GI~HRD  301 (475)
T KOG0615|consen  228 EILKKL-----SHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLL-TAVKYLHSQGIIHRD  301 (475)
T ss_pred             HHHHhc-----CCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHH-HHHHHHHHcCccccc
Confidence            777766     34443333333344455699999999999998542 22222222 33333333 347889999999999


Q ss_pred             CCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC---CCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP---TGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~---~~D~~al~~~~~~~  529 (760)
                      +||+|||+... .+-.+++.|||+++.....   .+++.    ..+++.+++++.+.-+-..-   .+|+|+++-.++-.
T Consensus       302 iKPeNILl~~~~e~~llKItDFGlAK~~g~~---sfm~T----lCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvc  374 (475)
T KOG0615|consen  302 IKPENILLSNDAEDCLLKITDFGLAKVSGEG---SFMKT----LCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVC  374 (475)
T ss_pred             CCcceEEeccCCcceEEEecccchhhccccc---eehhh----hcCCccccChhheecCCeecccchheeeeccceEEEE
Confidence            99999999852 2357999999999988643   23333    35799999999887654332   45999988777666


Q ss_pred             HHHH
Q 004334          530 LNSF  533 (760)
Q Consensus       530 l~~~  533 (760)
                      +..|
T Consensus       375 LsG~  378 (475)
T KOG0615|consen  375 LSGY  378 (475)
T ss_pred             eccC
Confidence            6654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-15  Score=166.26  Aligned_cols=196  Identities=17%  Similarity=0.166  Sum_probs=143.1

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++..+|.-|.++.+|||-||.||-|.+  +|++|||||...-                    ++.++            .
T Consensus       559 d~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKl--------------------rFp~k------------q  606 (888)
T KOG4236|consen  559 DISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKL--------------------RFPTK------------Q  606 (888)
T ss_pred             hHHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecc--------------------cCCCc------------h
Confidence            466788888888999999999999999  6999999986431                    12111            1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH---HHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLE  442 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l---v~~~L~  442 (760)
                        +..+++|.+.++.+     ++|.|.--....+-..+.+.|||-+.|.-|.-+...+.. --+.++...+   +-..|+
T Consensus       607 --esqlR~EVaILq~l-----~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkg-RL~er~TkFlvtQIL~ALr  678 (888)
T KOG4236|consen  607 --ESQLRNEVAILQNL-----HHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKG-RLPERITKFLVTQILVALR  678 (888)
T ss_pred             --HHHHHHHHHHHHhc-----CCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcc-cchHHHHHHHHHHHHHHHH
Confidence              24577787777765     567777777777777788999999999777655543332 2233333332   234478


Q ss_pred             HHHhCCccccCCCCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      .+|..|++|||+||.|||+.... -.+++|+|||.++.+.++.-       ..-+.+++.+++++.+...-.....|+++
T Consensus       679 ~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF-------RrsVVGTPAYLaPEVLrnkGyNrSLDMWS  751 (888)
T KOG4236|consen  679 YLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF-------RRSVVGTPAYLAPEVLRNKGYNRSLDMWS  751 (888)
T ss_pred             HhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhh-------hhhhcCCccccCHHHHhhcccccccccee
Confidence            89999999999999999997522 25899999999999987632       22346899999999887755677889998


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      +..+++.-+
T Consensus       752 VGVIiYVsL  760 (888)
T KOG4236|consen  752 VGVIIYVSL  760 (888)
T ss_pred             eeEEEEEEe
Confidence            886655433

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.59  E-value=1.4e-14  Score=157.11  Aligned_cols=183  Identities=16%  Similarity=0.128  Sum_probs=124.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+.+..-       +.      .                    .+....+.+|+.
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~------~--------------------~~~~~~~~~E~~   70 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKRE-------IL------K--------------------MKQVQHVAQEKS   70 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH-------Hh------h--------------------hhhHHHHHHHHH
Confidence            6899999999999999  58999999876410       00      0                    001122345655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|++|.+..... ..+....+...  .+-..+..+|..|++|+|+
T Consensus        71 ~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dl  144 (329)
T PTZ00263         71 ILMEL----SHPFIVNMMCSF-QDENRVYFLLEFVVGGELFTHLRKA-GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDL  144 (329)
T ss_pred             HHHhC----CCCCCCcEEEEE-EcCCEEEEEEcCCCCChHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCC
Confidence            55554    222222222222 3446679999999999998765321 12222222211  1223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++..+++...         ...+.+.++++++......+...|++++...+.+++.
T Consensus       145 kp~NIll~~--~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt  210 (329)
T PTZ00263        145 KPENLLLDN--KGHVKVTDFGFAKKVPDRTF---------TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIA  210 (329)
T ss_pred             CHHHEEECC--CCCEEEeeccCceEcCCCcc---------eecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHc
Confidence            999999985  88999999999988765432         1246788899998887777788999999988776653

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.7e-14  Score=164.65  Aligned_cols=230  Identities=18%  Similarity=0.154  Sum_probs=160.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|-||||.|+.|.+  +++.+|||+++.+.-  +..                              |+. +.+..|.+
T Consensus       374 ~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~I--l~~------------------------------d~V-e~~~~Ekr  420 (694)
T KOG0694|consen  374 AVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDI--LQR------------------------------DEV-ESLMCEKR  420 (694)
T ss_pred             EEeccCcCceEEEEEEcCCCcEEEEEEeeccce--ecc------------------------------ccH-HHHHHHHH
Confidence            5799999999999999  588999999987521  111                              111 12344444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHP  456 (760)
                      .++...    .+|.+.--..-+.-.+..+.||||+.|+.+..+...+.....+.++-..-+-..|+.+|++|+++||+|-
T Consensus       421 I~~la~----~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKL  496 (694)
T KOG0694|consen  421 IFELAN----RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKL  496 (694)
T ss_pred             HHHHhc----cCCeEeecccccccCCeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecch
Confidence            444332    3343332222334445679999999999977665545555556666666667779999999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE  535 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~-~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~~  535 (760)
                      .|||++.  +|.++|+||||++.-- ...+       .+-+-+++++|+++++.-+..+..+|-++++..+++|+-.   
T Consensus       497 dNiLLD~--eGh~kiADFGlcKe~m~~g~~-------TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~G---  564 (694)
T KOG0694|consen  497 DNLLLDT--EGHVKIADFGLCKEGMGQGDR-------TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVG---  564 (694)
T ss_pred             hheEEcc--cCcEEecccccccccCCCCCc-------cccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcC---
Confidence            9999986  9999999999998753 2222       2335689999999999988889999999999888776532   


Q ss_pred             HHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHH
Q 004334          536 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD  603 (760)
Q Consensus       536 ~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lE  603 (760)
                                    +..|..  ++|          .+++..|+.-=..|++.++.+.+.++|.+++-.
T Consensus       565 --------------q~PF~g--ddE----------ee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~  606 (694)
T KOG0694|consen  565 --------------ESPFPG--DDE----------EEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKN  606 (694)
T ss_pred             --------------CCCCCC--CCH----------HHHHHHHhcCCCCCCCcccHHHHHHHHHHhccC
Confidence                          222211  111          134444444445688899999999999887654

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=2.9e-15  Score=164.67  Aligned_cols=184  Identities=17%  Similarity=0.285  Sum_probs=128.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|+||.||+|+-  +|+.||||-.+..                     +        +.|    +|+..  .+|.+
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~K---------------------f--------~s~----ee~~n--LREvk   60 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKK---------------------F--------YSW----EECMN--LREVK   60 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhh---------------------h--------ccH----HHHHH--HHHHH
Confidence            4699999999999998  6999999943221                     1        112    22221  34555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~--L~qI~~~GffHaDp  454 (760)
                      .+.++   -.|..-|.+-+|+.+-....++|||||+- .|.++...+..-+....+...+.+.+  |..||.+||||||+
T Consensus        61 sL~kl---n~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDl  136 (538)
T KOG0661|consen   61 SLRKL---NPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDL  136 (538)
T ss_pred             HHHhc---CCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccC
Confidence            55554   23445577777887776688999999973 56666655544445455444443333  77899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      ||+||||..  ..-|+|.|||+++.+....  -|.+.+    .--+..+-+.|++-|..+...|+++++-++.++
T Consensus       137 KPENiLi~~--~~~iKiaDFGLARev~Skp--PYTeYV----STRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl  203 (538)
T KOG0661|consen  137 KPENILISG--NDVIKIADFGLAREVRSKP--PYTEYV----STRWYRAPEVLLRSGYYSSPVDMWAVGCIMAEL  203 (538)
T ss_pred             ChhheEecc--cceeEecccccccccccCC--Ccchhh----hcccccchHHhhhccccCCchHHHHHHHHHHHH
Confidence            999999985  5689999999999986542  222222    123455677889999999999999999776654

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=7.5e-15  Score=159.06  Aligned_cols=182  Identities=20%  Similarity=0.202  Sum_probs=121.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 ......+.+|..
T Consensus         7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK---------------------------------LNEVRHVLTERD   53 (333)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999999  58999999876421000                                 000112334544


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+..+    . +++ +.+... .......+|||||++|++|.++.... ..+....+...  .+-..+..+|..|++|+|
T Consensus        54 ~l~~~----~-h~~iv~~~~~-~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~d  126 (333)
T cd05600          54 ILTTT----K-SEWLVKLLYA-FQDDEYLYLAMEYVPGGDFRTLLNNL-GVLSEDHARFYMAEMFEAVDALHELGYIHRD  126 (333)
T ss_pred             HHHhC----C-CCCCccEEEE-EEcCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            44443    1 222 222222 23345679999999999999876322 12233222221  222347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++.......         .-..+++.++++++......+...|+++++-.+.+++.
T Consensus       127 lkp~Nil~~~--~~~~kL~Dfg~a~~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~  193 (333)
T cd05600         127 LKPENFLIDA--SGHIKLTDFGLSKGIVTYA---------NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLC  193 (333)
T ss_pred             CCHHHEEECC--CCCEEEEeCcCCccccccc---------CCcccCccccChhHhcCCCCCCccceecchHHHhhhhh
Confidence            9999999985  8899999999998765411         11235677888888877767788999999988777653

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.7e-14  Score=160.03  Aligned_cols=187  Identities=19%  Similarity=0.239  Sum_probs=129.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||+|+||.|+.|+.  +|+.||||+.......                    ...           ......+.+|..
T Consensus        23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~--------------------~~~-----------~~~~~~i~rEi~   71 (370)
T KOG0583|consen   23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVS--------------------SKS-----------QKLDELIKREIS   71 (370)
T ss_pred             eeecCCCCeeEEEeeeccCCCeEEEEEechhccc--------------------ccc-----------cccchhhHHHHH
Confidence            6899999999999988  6999999986552000                    000           001122335666


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~---~~L~qI~~~GffHa  452 (760)
                      ++++++    ++++ +.+-.++ +..+..++||||+.|+.|.+.... ...+.. ..++....   ..+.++|..|++||
T Consensus        72 ~~~~~~----~HpnI~~l~ev~-~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E-~~ar~~F~Qlisav~y~H~~gi~HR  144 (370)
T KOG0583|consen   72 ILRRLR----SHPNIIRLLEVF-ATPTKIYIVMEYCSGGDLFDYIVN-KGRLKE-DEARKYFRQLISAVAYCHSRGIVHR  144 (370)
T ss_pred             HHHHhc----cCCCEeEEEEEE-ecCCeEEEEEEecCCccHHHHHHH-cCCCCh-HHHHHHHHHHHHHHHHHHhCCEeeC
Confidence            666663    2333 3444444 455668999999999999886643 222222 33333322   33677899999999


Q ss_pred             CCCCCcEEEeccCC-CcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHc-C-CCCCCCChHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNG-GRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQM-G-VLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       453 DpHPGNILV~~~~~-g~l~LiDFG~v~~l~-~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G-~~~~~~D~~al~~~~~~  528 (760)
                      |+||+||+++.  + +.++|+|||++...+ +..   +    ..-..+.+.+++++++.. + +.....|+|+++..++.
T Consensus       145 DLK~ENilld~--~~~~~Kl~DFG~s~~~~~~~~---~----l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~  215 (370)
T KOG0583|consen  145 DLKPENILLDG--NEGNLKLSDFGLSAISPGEDG---L----LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYV  215 (370)
T ss_pred             CCCHHHEEecC--CCCCEEEeccccccccCCCCC---c----ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHH
Confidence            99999999986  4 899999999999884 221   1    233467899999999886 5 56678899999988877


Q ss_pred             HHHH
Q 004334          529 FLNS  532 (760)
Q Consensus       529 ~l~~  532 (760)
                      ++..
T Consensus       216 ml~G  219 (370)
T KOG0583|consen  216 LLCG  219 (370)
T ss_pred             HHhC
Confidence            6643

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.57  E-value=1.6e-14  Score=156.77  Aligned_cols=185  Identities=14%  Similarity=0.111  Sum_probs=121.1

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.++.....                                 .+....+.+|.+.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~E~~~   48 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIA---------------------------------KDEVAHTLTESRV   48 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  58999999976521100                                 0001123345544


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +..+     +++++.-...+.......+|||||++|++|.+..... ..++...+....  +-..+..+|..|++|+|+|
T Consensus        49 l~~l-----~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDik  122 (328)
T cd05593          49 LKNT-----RHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRE-RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLK  122 (328)
T ss_pred             HHhC-----CCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC
Confidence            4443     2233222222223445679999999999997754322 123333322222  2234788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  ++.++|+|||++.........      .....+...++++++...+..++..|++++...+.+++.
T Consensus       123 p~NIll~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ellt  190 (328)
T cd05593         123 LENLMLDK--DGHIKITDFGLCKEGITDAAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  190 (328)
T ss_pred             HHHeEECC--CCcEEEecCcCCccCCCcccc------cccccCCcCccChhhhcCCCCCccCCccccchHHHHHhh
Confidence            99999985  889999999998764322110      011246777888988877777788999999987776653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.5e-14  Score=160.32  Aligned_cols=184  Identities=16%  Similarity=0.181  Sum_probs=128.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-||.|+||+||+++.  +|+.||+||.....                 +.+                ......+.+|.+
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~-----------------l~k----------------~~~reKv~~EIe   70 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKL-----------------LKK----------------PKQREKVLNEIE   70 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehHH-----------------hcC----------------cchHHHHHHHHH
Confidence            5799999999999998  69999999864310                 000                001112333432


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                          +.+.++|.+-|.+-. +.|.++.-|||.|.|+-.+|..+.. ....++..+....+  +-..++++|.+|++|||+
T Consensus        71 ----IHr~L~HpnIV~f~~-~FEDs~nVYivLELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDL  144 (592)
T KOG0575|consen   71 ----IHRSLKHPNIVQFYH-FFEDSNNVYIVLELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDL  144 (592)
T ss_pred             ----HHHhcCCCcEEeeee-EeecCCceEEEEEecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHhcCceeccc
Confidence                223333433333333 3356777899999999999999875 22333333332222  233477899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~-~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |-||||+++  +-.+++.|||++..+..+ +|..       -+.+++.+++++++.-.-.+..+|+|+++-.++-+|
T Consensus       145 KLGNlfL~~--~~~VKIgDFGLAt~le~~~Erk~-------TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL  212 (592)
T KOG0575|consen  145 KLGNLFLNE--NMNVKIGDFGLATQLEYDGERKK-------TLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLL  212 (592)
T ss_pred             chhheeecC--cCcEEecccceeeeecCcccccc-------eecCCCcccChhHhccCCCCCchhhhhhhhHHHhhh
Confidence            999999986  779999999999999854 4421       245899999999998766778899999998776655

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.57  E-value=1e-14  Score=160.13  Aligned_cols=189  Identities=17%  Similarity=0.207  Sum_probs=122.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-  ..                               -.+....+..|..
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~-------------------------------~~~~~~~~~~e~~   53 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKAD--ML-------------------------------EKEQVAHIRAERD   53 (360)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH--Hh-------------------------------hhhhHHHHHHHHH
Confidence            6899999999999998  58999999876410  00                               0011123344544


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     ++++  +++.+.  ......+|||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        54 ~l~~l-----~~~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~~L~~lH~~givHr  125 (360)
T cd05627          54 ILVEA-----DGAW--VVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK-DTLSEEATQFYIAETVLAIDAIHQLGFIHR  125 (360)
T ss_pred             HHHhC-----CCCC--EeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEcc
Confidence            44433     2222  333333  2334579999999999998865322 223333222222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhhcCHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYEKDADKV  503 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l-----------------------------~~al~~~D~~~v  503 (760)
                      |+||+||+++.  +|.++|+|||++..+.......+..-                             ......++..++
T Consensus       126 DLkp~NIli~~--~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  203 (360)
T cd05627         126 DIKPDNLLLDA--KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYI  203 (360)
T ss_pred             CCCHHHEEECC--CCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCcccc
Confidence            99999999985  89999999999886643321111000                             000123667888


Q ss_pred             HHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          504 LQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       504 ~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +++++.-...+...|+++++-.+.+++
T Consensus       204 APE~~~~~~~~~~~DiwSlGvilyel~  230 (360)
T cd05627         204 APEVFMQTGYNKLCDWWSLGVIMYEML  230 (360)
T ss_pred             CHHHHcCCCCCCcceeccccceeeecc
Confidence            999887666677889999987766654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.57  E-value=1.8e-14  Score=155.80  Aligned_cols=185  Identities=22%  Similarity=0.210  Sum_probs=119.1

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.++.....                                 ++.......|...
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQ---------------------------------DDDVECTMTEKRI   48 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---------------------------------ccHHHHHHHHHHH
Confidence            589999999999998  58999999876521000                                 0000111223333


Q ss_pred             HHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +...    .+++++ .+...+ ......++||||++|++|.+..... ..++...+....  +-..+..+|..|++|+|+
T Consensus        49 l~~~----~~h~~iv~~~~~~-~~~~~~~iv~Ey~~~g~L~~~i~~~-~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dl  122 (320)
T cd05590          49 LSLA----RNHPFLTQLYCCF-QTPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEITSALMFLHDKGIIYRDL  122 (320)
T ss_pred             HHhc----cCCCchhceeeEE-EcCCEEEEEEcCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCC
Confidence            3222    123322 222222 3345679999999999998754322 223333332222  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++.........      .....+++.++++++......++..|++++...+.+++.
T Consensus       123 kp~NIli~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  191 (320)
T cd05590         123 KLDNVLLDH--EGHCKLADFGMCKEGIFNGKT------TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLC  191 (320)
T ss_pred             CHHHeEECC--CCcEEEeeCCCCeecCcCCCc------ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhh
Confidence            999999985  889999999998764322111      111246778889998877667778899999987776653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.56  E-value=1.4e-14  Score=156.54  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=119.7

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 .+....+.+|...
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIA---------------------------------KDEVAHTLTESRV   48 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hHHHHHHHHHHHH
Confidence            589999999999998  58999999876521000                                 0001122345554


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpH  455 (760)
                      +.++     +++++.-..-+.......+|||||++|++|.+..... ..+....+...  .+-..++.+|..|++|+|+|
T Consensus        49 l~~l-----~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlk  122 (323)
T cd05571          49 LQNT-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLK  122 (323)
T ss_pred             HHhC-----CCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC
Confidence            5443     2233222222223445679999999999998765322 22333332222  22234788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++|+|||++.........      .....++..++++++......+...|+++++-.+.+++
T Consensus       123 p~NIll~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell  189 (323)
T cd05571         123 LENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM  189 (323)
T ss_pred             HHHEEECC--CCCEEEeeCCCCcccccCCCc------ccceecCccccChhhhcCCCCCccccCcccchhhhhhh
Confidence            99999985  789999999998754222111      01124677888888887666677899999988776654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.56  E-value=1.7e-14  Score=159.86  Aligned_cols=190  Identities=15%  Similarity=0.153  Sum_probs=120.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-.  .                               -.+....+.+|..
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~--~-------------------------------~~~~~~~~~~E~~   53 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDTHALYAMKTLRKKDV--L-------------------------------NRNQVAHVKAERD   53 (381)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHh--h-------------------------------hhHHHHHHHHHHH
Confidence            5799999999999998  589999998754100  0                               0011123445555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      .+.++     ++++  +++.+.  ......++||||++|++|.++.... ...+...+...  .+-..+..+|..|++|+
T Consensus        54 il~~l-----~h~~--iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~~LH~~givHr  125 (381)
T cd05626          54 ILAEA-----DNEW--VVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-EVFPEVLARFYIAELTLAIESVHKMGFIHR  125 (381)
T ss_pred             HHHhc-----CCCC--eeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            55443     2232  233332  3345679999999999998865321 12232222111  23345788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHH---------------------------------H--------H
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL---------------------------------E--------A  491 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~---------------------------------~--------l  491 (760)
                      |+||.||+++.  +++++|+|||++..+.......+.                                 .        .
T Consensus       126 DlKp~Nili~~--~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (381)
T cd05626         126 DIKPDNILIDL--DGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRC  203 (381)
T ss_pred             CCcHHHEEECC--CCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccccccc
Confidence            99999999985  789999999997644211100000                                 0        0


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          492 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       492 ~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ...-..+...+++++++.-...+...|+++++-.+.+++.
T Consensus       204 ~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~ellt  243 (381)
T cd05626         204 LAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLV  243 (381)
T ss_pred             ccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHh
Confidence            0011236778889998876666778999999988777654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=2e-14  Score=157.49  Aligned_cols=190  Identities=17%  Similarity=0.200  Sum_probs=123.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..       ++         .                 -.+....+.+|..
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~---------~-----------------~~~~~~~~~~E~~   53 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKS-------EM---------L-----------------EKEQVAHVRAERD   53 (364)
T ss_pred             EEEEecCCEEEEEEEECCCCCEEEEEEEEHH-------Hh---------h-----------------hhhHHHHHHHHHH
Confidence            6799999999999999  5899999987541       00         0                 0011122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+.     +++  +++.+.  ......+|||||++|++|.++.... ..+....+...+  +-..+..+|..|++|+
T Consensus        54 il~~l~-----h~~--iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~  125 (364)
T cd05599          54 ILAEAD-----NPW--VVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK-DTFTEEETRFYIAETILAIDSIHKLGYIHR  125 (364)
T ss_pred             HHHhCC-----CCC--CcceEEEEEcCCeEEEEECCCCCcHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEec
Confidence            555442     232  233332  3345679999999999998865322 223333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHH--------------------------------HHHHhhcCH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA--------------------------------FYGIYEKDA  500 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l--------------------------------~~al~~~D~  500 (760)
                      |+||+||+++.  +|.++|+|||++..+...........                                ......+++
T Consensus       126 Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  203 (364)
T cd05599         126 DIKPDNLLLDA--KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTP  203 (364)
T ss_pred             cCCHHHeEECC--CCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCc
Confidence            99999999985  88999999999876643221110000                                000123667


Q ss_pred             HHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          501 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       501 ~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .++++++..-+..+...|+++++-.+.+++.
T Consensus       204 ~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  234 (364)
T cd05599         204 DYIAPEVFLQTGYNKECDWWSLGVIMYEMLV  234 (364)
T ss_pred             cccCHHHHcCCCCCCeeeeecchhHHHHhhc
Confidence            8888988876667788999999987776654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.56  E-value=3.8e-14  Score=146.19  Aligned_cols=186  Identities=19%  Similarity=0.159  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|++  +|+.||+|+.+.....                                   +....+.+|.+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~-----------------------------------~~~~~~~~e~~   45 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPP-----------------------------------DLKAKFLQEAR   45 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCH-----------------------------------HHHHHHHHHHH
Confidence            3689999999999998  6999999986543211                                   11222344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++     +++++.-+.-+.......++||||++|++|.++........+...+....  +-..+..+|..|++|+|+
T Consensus        46 ~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl  120 (252)
T cd05084          46 ILKQY-----SHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDL  120 (252)
T ss_pred             HHHhC-----CCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            44443     22332211112233456799999999999998764333234443333322  223367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||++++  ++.++|+|||++..+.+.....    ..+.......+++++....+..+...|++++.-.+.+++
T Consensus       121 ~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~  190 (252)
T cd05084         121 AARNCLVTE--KNVLKISDFGMSREEEDGVYAS----TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAF  190 (252)
T ss_pred             chheEEEcC--CCcEEECccccCcccccccccc----cCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHH
Confidence            999999985  7899999999988765321100    001111234567788777777777889999987776655

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=3.3e-14  Score=151.14  Aligned_cols=181  Identities=18%  Similarity=0.164  Sum_probs=120.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-...                                 ......+.+|..
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~E~~   53 (291)
T cd05612           7 KTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR---------------------------------LKQEQHVHNEKR   53 (291)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---------------------------------hHHHHHHHHHHH
Confidence            6799999999999998  59999999875410000                                 000112334544


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++.     +++  |.+++.  ......+++|||++|++|.++..... .+.........  +-..+..+|..|++|+
T Consensus        54 ~l~~l~-----hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~  125 (291)
T cd05612          54 VLKEVS-----HPF--IIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSG-RFSNSTGLFYASEIVCALEYLHSKEIVYR  125 (291)
T ss_pred             HHHhCC-----CCc--HhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeec
Confidence            444431     222  222332  22345689999999999988654221 23333222221  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++.  +|.++|+|||++..+.....         ...++..++++++......+...|+++++-.+.+++.
T Consensus       126 dlkp~NIli~~--~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~  193 (291)
T cd05612         126 DLKPENILLDK--EGHIKLTDFGFAKKLRDRTW---------TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLV  193 (291)
T ss_pred             CCCHHHeEECC--CCCEEEEecCcchhccCCcc---------cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHh
Confidence            99999999985  88999999999887754321         1235777888888776666778899999988776653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.56  E-value=5.5e-14  Score=148.86  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||+........                                 ......+.+|..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~E~~   52 (285)
T cd05631           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------RKGEAMALNEKR   52 (285)
T ss_pred             EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh---------------------------------hhhHHHHHHHHH
Confidence            5799999999999998  69999999865521110                                 001112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||++|++|.+..... ..+.+...+....  +-..+..+|..|++|+|
T Consensus        53 il~~l~----~~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~d  127 (285)
T cd05631          53 ILEKVN----SRFVVSLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRD  127 (285)
T ss_pred             HHHhcC----CCcEEEEEEEE-ccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCC
Confidence            555542    22223333333 3345679999999999998754321 1233433333222  23347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++|+|||++..++.....       .-..+...++++++...+..+...|+++++-.+.+++.
T Consensus       128 ikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~  196 (285)
T cd05631         128 LKPENILLDD--RGHIRISDLGLAVQIPEGETV-------RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQ  196 (285)
T ss_pred             CCHHHEEECC--CCCEEEeeCCCcEEcCCCCee-------cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHh
Confidence            9999999985  789999999999876543211       01235667888888877777788999999987766653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.55  E-value=6.2e-14  Score=148.10  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=120.9

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|.||++..  +|+.||||+........                                 ......+..|.+.+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~E~~il   47 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKK---------------------------------RKGYEGAMVEKRIL   47 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhh---------------------------------hHHHHHHHHHHHHH
Confidence            68999999999998  68999999865421000                                 00011234455555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+     +++++....-+.......++||||++|++|.+....   ....++...+....  +-..+..+|..|++|+|
T Consensus        48 ~~l-----~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~d  122 (280)
T cd05608          48 AKV-----HSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRD  122 (280)
T ss_pred             HhC-----CCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCC
Confidence            544     223322222122334567999999999999875421   11223333332222  23347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++|+|||++..+.......      ....++..+++++....+..+...|++++.-.+.+++.
T Consensus       123 lkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~  192 (280)
T cd05608         123 LKPENVLLDN--DGNVRISDLGLAVELKDGQSKT------KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIA  192 (280)
T ss_pred             CCHHHEEECC--CCCEEEeeCccceecCCCCccc------cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHh
Confidence            9999999985  7899999999998765432210      01235667888888877777778999999987776654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.55  E-value=2.9e-14  Score=153.90  Aligned_cols=184  Identities=21%  Similarity=0.173  Sum_probs=118.8

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.+......                                 ++.......|.+.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~i   48 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQ---------------------------------DDDVDCTMTEKRI   48 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  48899999876521100                                 0000112233333


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +...    .++++|  ++++.  ......+|||||++|++|.+..... ...+........  +-..+..+|..|++|+|
T Consensus        49 l~~~----~~hp~i--~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrD  121 (321)
T cd05591          49 LALA----AKHPFL--TALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS-RKFDEPRSRFYAAEVTLALMFLHRHGVIYRD  121 (321)
T ss_pred             HHhc----cCCCCc--cceeeEEEcCCeEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccC
Confidence            3222    233333  33332  3345679999999999997754322 223333322222  23347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++|+|||++.........      .....+...++++++......++..|++++...+.+++.
T Consensus       122 ikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~t  191 (321)
T cd05591         122 LKLDNILLDA--EGHCKLADFGMCKEGILNGVT------TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMA  191 (321)
T ss_pred             CCHHHeEECC--CCCEEEeecccceecccCCcc------ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhc
Confidence            9999999985  889999999998764322111      011235677888888876667788999999987776653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.55  E-value=5.3e-14  Score=151.97  Aligned_cols=187  Identities=17%  Similarity=0.094  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 +.-......|..
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   52 (323)
T cd05616           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ---------------------------------DDDVECTMVEKR   52 (323)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999998  57899999876531100                                 000011122333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+...    .+++.+....-+.......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        53 ~l~~~----~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDl  127 (323)
T cd05616          53 VLALS----GKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQV-GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDL  127 (323)
T ss_pred             HHHhc----cCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCC
Confidence            33222    23333322222223345679999999999998764321 223333332222  223477899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++.........      .....+++.++++++...+..+...|+++++-.+.+++.
T Consensus       128 kp~Nill~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  196 (323)
T cd05616         128 KLDNVMLDS--EGHIKIADFGMCKENMWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  196 (323)
T ss_pred             CHHHeEECC--CCcEEEccCCCceecCCCCCc------cccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHh
Confidence            999999986  889999999998754322111      111246788899999888877888999999988776654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.55  E-value=4.3e-14  Score=152.76  Aligned_cols=185  Identities=17%  Similarity=0.101  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                 ++-...+..|.+
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~e~~   52 (324)
T cd05587           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ---------------------------------DDDVECTMVEKR   52 (324)
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999998  47899999976521100                                 000112233444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+    .+.+.  ++..+.  ......++||||++|++|.+..... ..+.........  +-..+..+|..|++|+
T Consensus        53 ~l~~~----~~~~~--i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivH~  125 (324)
T cd05587          53 VLALP----GKPPF--LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GKFKEPHAVFYAAEIAIGLFFLHSKGIIYR  125 (324)
T ss_pred             HHHhc----CCCCc--eeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEec
Confidence            44433    22222  233322  3345679999999999998765321 122333222222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||.|||++.  ++.++|+|||++.........      .....++..++++++...+..+...|+++++-.+.+++.
T Consensus       126 dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ellt  196 (324)
T cd05587         126 DLKLDNVMLDA--EGHIKIADFGMCKENIFGGKT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  196 (324)
T ss_pred             CCCHHHeEEcC--CCCEEEeecCcceecCCCCCc------eeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHh
Confidence            99999999985  789999999998653211110      011235677888888877767778899999988776653

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.55  E-value=2.6e-14  Score=154.61  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=119.6

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||+|+.+......                                 .+....+.+|.+.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~E~~~   48 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIA---------------------------------KDEVAHTVTESRV   48 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hHHHHHHHHHHHH
Confidence            589999999999998  58999999976521100                                 0001122345544


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +..+    .+..-+.+...+ ......+|||||++|++|.+..... ..++...+....  +-..+..+|..|++|+|+|
T Consensus        49 l~~l----~hp~i~~~~~~~-~~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk  122 (323)
T cd05595          49 LQNT----RHPFLTALKYAF-QTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRDVVYRDIK  122 (323)
T ss_pred             HHhC----CCCCCcceeeEE-ecCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC
Confidence            4444    222112222222 3345679999999999997754322 123333332222  2334788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  ++.++|+|||++.........      .....+++.+++++...-+......|+++++-.+.+++.
T Consensus       123 p~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~  190 (323)
T cd05595         123 LENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  190 (323)
T ss_pred             HHHEEEcC--CCCEEecccHHhccccCCCCc------cccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHh
Confidence            99999985  889999999988753221110      011235677888888776667788899999987776653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.55  E-value=2e-14  Score=158.51  Aligned_cols=192  Identities=18%  Similarity=0.182  Sum_probs=120.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|+.  +|+.||||+.+..       +.         .                 ..+....+.+|..
T Consensus         7 ~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~-------~~---------~-----------------~~~~~~~~~~E~~   53 (376)
T cd05598           7 KTIGIGAFGEVCLVRKVDTNALYAMKTLRKA-------DV---------L-----------------MRNQAAHVKAERD   53 (376)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEcHH-------HH---------H-----------------hhhhHHHHHHHHH
Confidence            6899999999999998  5899999986541       00         0                 0011122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      .+.++     +++++.-...........++||||++|++|.++.... ..+....+...  .+-..+..+|..|++|+|+
T Consensus        54 il~~l-----~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDl  127 (376)
T cd05598          54 ILAEA-----DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL-GIFEEDLARFYIAELTCAIESVHKMGFIHRDI  127 (376)
T ss_pred             HHHhC-----CCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCC
Confidence            55544     2232221112223345679999999999999875322 12222222111  1224478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhh----------------------------------HHHHHH---HHHHHhh
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNI----------------------------------REGLLE---AFYGIYE  497 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~----------------------------------r~~l~~---l~~al~~  497 (760)
                      ||+||+++.  ++.++|+|||++..+....                                  +.....   .......
T Consensus       128 kp~Nill~~--~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (376)
T cd05598         128 KPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLV  205 (376)
T ss_pred             CHHHEEECC--CCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccC
Confidence            999999985  8899999999975332000                                  000000   0001124


Q ss_pred             cCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          498 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       498 ~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +.+.++++++..-...+...|+++++-.+.+++.
T Consensus       206 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~  239 (376)
T cd05598         206 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV  239 (376)
T ss_pred             CCccccCHHHHcCCCCCcceeeeeccceeeehhh
Confidence            6677888888876666778899999877766543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.55  E-value=7.6e-14  Score=140.16  Aligned_cols=141  Identities=19%  Similarity=0.207  Sum_probs=102.9

Q ss_pred             cccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAEL  380 (760)
Q Consensus       301 IasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~  380 (760)
                      ||.|++|.||+|.++|.+|+||+..+.....-..|                          .  ..-...+.+|.+++..
T Consensus         2 ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~--------------------------~--~~~~~~~~~E~~~l~~   53 (199)
T TIGR03724         2 IAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELD--------------------------E--RIRRERTRNEARLLSR   53 (199)
T ss_pred             CCCCceEEEEEeecCCccEEEEEecCCcCcCchHH--------------------------H--HHHHHHHHHHHHHHHH
Confidence            78999999999999999999998665321110000                          0  0011235678888887


Q ss_pred             HHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEE
Q 004334          381 FASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA  460 (760)
Q Consensus       381 f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPGNIL  460 (760)
                      +..     +++.+|.++.......+++|||++|.++.++.....     ..++..++ ..+..+|..|++|+|+||+||+
T Consensus        54 l~~-----~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~-----~~~~~~i~-~~l~~lH~~gi~H~Dl~~~Nil  122 (199)
T TIGR03724        54 ARK-----AGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGN-----DELLREIG-RLVGKLHKAGIVHGDLTTSNII  122 (199)
T ss_pred             HHH-----CCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcH-----HHHHHHHH-HHHHHHHHCCeecCCCCcceEE
Confidence            754     347788888777777899999999999988643211     13444433 4578899999999999999999


Q ss_pred             EeccCCCcEEEEeecceeccChh
Q 004334          461 VDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       461 V~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ++   +++++++|||+++...+.
T Consensus       123 ~~---~~~~~liDfg~a~~~~~~  142 (199)
T TIGR03724       123 VR---DDKLYLIDFGLGKYSDEI  142 (199)
T ss_pred             EE---CCcEEEEECCCCcCCCcH
Confidence            97   688999999998876543

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.54  E-value=4.8e-14  Score=152.15  Aligned_cols=184  Identities=18%  Similarity=0.172  Sum_probs=118.1

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||||+.+...... .                               ++. .....|...
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~-------------------------------~~~-~~~~~e~~~   48 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE-D-------------------------------DDV-ECTMVERRV   48 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-h-------------------------------hhH-HHHHHHHHH
Confidence            589999999999998  58899999977532100 0                               000 011122221


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +..    ..++++  +++.+.  ......++||||++|++|.+..... ..++...+....  +-..+..+|..|++|+|
T Consensus        49 l~~----~~~hp~--i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~~ivH~d  121 (316)
T cd05592          49 LAL----AWEHPF--LTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSS-GRFDEARARFYAAEIICGLQFLHKKGIIYRD  121 (316)
T ss_pred             HHh----ccCCCC--ccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCC
Confidence            111    112333  233332  2345679999999999998765322 223333333222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++.........      .....++..++++++......+...|++++.-.+.+++.
T Consensus       122 lkp~Nill~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~  191 (316)
T cd05592         122 LKLDNVLLDK--DGHIKIADFGMCKENMNGEGK------ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLI  191 (316)
T ss_pred             CCHHHeEECC--CCCEEEccCcCCeECCCCCCc------cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHh
Confidence            9999999985  789999999998765332211      011235777888888876666778999999987776653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.54  E-value=8.1e-14  Score=143.41  Aligned_cols=185  Identities=18%  Similarity=0.187  Sum_probs=121.7

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ++||.|++|.||+|.+ +++.||+|+.++.....                                   ....+.+|+..
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~-----------------------------------~~~~~~~e~~~   45 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQE-----------------------------------LKIKFLSEARI   45 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHH-----------------------------------HHHHHHHHHHH
Confidence            3689999999999998 68899999876643211                                   11123455555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpH  455 (760)
                      +.++     +++++.-+.-+.......+++|||++|++|.++........+...+.....+  ..+..+|..|++|+|++
T Consensus        46 l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~  120 (250)
T cd05085          46 LKQY-----DHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLA  120 (250)
T ss_pred             HHhC-----CCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC
Confidence            5544     2333222222223345679999999999998876433333444444433322  34678899999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||++++  ++.++|+|||++..........     .........++++++...+..+...|++++...+.+++
T Consensus       121 p~nili~~--~~~~~l~d~g~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~  188 (250)
T cd05085         121 ARNCLVGE--NNVLKISDFGMSRQEDDGIYSS-----SGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETF  188 (250)
T ss_pred             hheEEEcC--CCeEEECCCccceecccccccc-----CCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHh
Confidence            99999985  7899999999987654321100     00011123467777777777777889999987766554

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.54  E-value=7.4e-14  Score=148.90  Aligned_cols=185  Identities=19%  Similarity=0.214  Sum_probs=120.1

Q ss_pred             cccccccccEEEEEEE------------------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccch
Q 004334          299 EPIAAASLGQVHRARL------------------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------------------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l  360 (760)
                      +.||+|++|.||+|++                  ++..||||+.++.....                             
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   61 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKN-----------------------------   61 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHH-----------------------------
Confidence            5799999999999975                  23479999988753221                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------------
Q 004334          361 VAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------  425 (760)
Q Consensus       361 ~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------------  425 (760)
                            ....+.+|.+.+.++    .+..-+.+...+ ......+|+|||++|++|.++......               
T Consensus        62 ------~~~~~~~E~~~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  130 (304)
T cd05096          62 ------ARNDFLKEVKILSRL----KDPNIIRLLGVC-VDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAH  130 (304)
T ss_pred             ------HHHHHHHHHHHHhhc----CCCCeeEEEEEE-ecCCceEEEEecCCCCcHHHHHHhcccccccccccccccccc
Confidence                  111234555555554    222222222222 334567999999999999886532210               


Q ss_pred             ---CCCHH---HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcC
Q 004334          426 ---GVDRK---RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD  499 (760)
Q Consensus       426 ---g~d~~---~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D  499 (760)
                         .+...   .++..+ ...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .+-....
T Consensus       131 ~~~~~~~~~~~~i~~~i-~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~DfG~~~~~~~~~~~~~----~~~~~~~  203 (304)
T cd05096         131 CLPAISYSSLLHVALQI-ASGMKYLSSLNFVHRDLATRNCLVGE--NLTIKIADFGMSRNLYAGDYYRI----QGRAVLP  203 (304)
T ss_pred             ccccccHHHHHHHHHHH-HHHHHHHHHCCccccCcchhheEEcC--CccEEECCCccceecccCceeEe----cCcCCCC
Confidence               01111   222222 23478899999999999999999986  78999999999987644321100    0111123


Q ss_pred             HHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          500 ADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       500 ~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ..++++++...+..++..|++++.-.+.+++
T Consensus       204 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  234 (304)
T cd05096         204 IRWMAWECILMGKFTTASDVWAFGVTLWEIL  234 (304)
T ss_pred             ccccCHHHHhcCCCCchhhhHHHHHHHHHHH
Confidence            4577888877777788899999998777665

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.54  E-value=4.7e-14  Score=153.22  Aligned_cols=188  Identities=15%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-  . .                              .......+.+|..
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~--~-~------------------------------~~~~~~~~~~e~~   53 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWE--M-L------------------------------KRAETACFREERN   53 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH--H-H------------------------------hhHHHHHHHHHHH
Confidence            5799999999999998  58899999864310  0 0                              0000111233333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      .+..+     +++.+....-+.+.....+|||||++|++|.++.......+........  .+-..++.+|..|++|+|+
T Consensus        54 ~l~~~-----~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDl  128 (331)
T cd05624          54 VLVNG-----DCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDI  128 (331)
T ss_pred             HHHhC-----CCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccC
Confidence            33222     2233322222223445679999999999999876432223333322221  1234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~~~~~~~  529 (760)
                      ||.||+++.  ++.++|+|||++..+.......     .....+...++++++...     +......|++++...+.++
T Consensus       129 kp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~el  201 (331)
T cd05624         129 KPDNVLLDM--NGHIRLADFGSCLKMNQDGTVQ-----SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEM  201 (331)
T ss_pred             chHHEEEcC--CCCEEEEeccceeeccCCCcee-----eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhh
Confidence            999999985  7899999999998775432210     012236677888887754     4456778999998877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       202 l~  203 (331)
T cd05624         202 LY  203 (331)
T ss_pred             hh
Confidence            53

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.54  E-value=4.1e-14  Score=152.94  Aligned_cols=185  Identities=19%  Similarity=0.166  Sum_probs=117.5

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.+......                                 .+....+..|...
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN---------------------------------RKEQKHIMAERNV   48 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  69999999876521100                                 0000111122111


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpH  455 (760)
                         +.+.+.+..-+.+...+ +.....+++|||++|+.|.+.... ...+....+...  .+-..+..+|..|++|+|+|
T Consensus        49 ---~l~~~~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlk  123 (325)
T cd05604          49 ---LLKNVKHPFLVGLHYSF-QTTEKLYFVLDFVNGGELFFHLQR-ERSFPEPRARFYAAEIASALGYLHSINIVYRDLK  123 (325)
T ss_pred             ---HHHhCCCCCCccEEEEE-ecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence               11222222222222222 334567999999999999765432 122333332222  12334788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||+++.  ++.++|+|||++.........      .....++..++++++...+..+...|++++.-.+.+++
T Consensus       124 p~NIll~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~  190 (325)
T cd05604         124 PENILLDS--QGHVVLTDFGLCKEGIAQSDT------TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEML  190 (325)
T ss_pred             HHHeEECC--CCCEEEeecCCcccCCCCCCC------cccccCChhhCCHHHHcCCCCCCcCccccccceehhhh
Confidence            99999986  889999999998753221111      01124677888999887777778899999988776665

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.54  E-value=1.1e-13  Score=145.22  Aligned_cols=184  Identities=17%  Similarity=0.214  Sum_probs=111.7

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+|.||+|.||+++.  +|+-||||.-.-.-.+.                                  .+.+...+|.+.
T Consensus         9 kvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~----------------------------------~VkKIAlREIrm   54 (396)
T KOG0593|consen    9 KVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDP----------------------------------VVKKIALREIRM   54 (396)
T ss_pred             ccccCcceEEEEeccCCcccEEEEEeeccCCccH----------------------------------HHHHHHHHHHHH
Confidence            589999999999999  59999999643211100                                  011111223333


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~--~L~qI~~~GffHaDpH  455 (760)
                      ++++    ++.+.|..-+|+. -..+..||.|||+-.-|.++.. ...|.+...+-..+.+.  .++..|.++++|||+|
T Consensus        55 LKqL----kH~NLVnLiEVFr-rkrklhLVFE~~dhTvL~eLe~-~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIK  128 (396)
T KOG0593|consen   55 LKQL----KHENLVNLIEVFR-RKRKLHLVFEYCDHTVLHELER-YPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIK  128 (396)
T ss_pred             HHhc----ccchHHHHHHHHH-hcceeEEEeeecchHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCC
Confidence            3222    1112222222221 1245689999999888877654 34566665554443332  2556789999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||||+.  .|.++|+|||.++.++. --+.|.+.+..=..+.++    .+..-.-..+.+|+|+++=.+.+++
T Consensus       129 PENILit~--~gvvKLCDFGFAR~L~~-pgd~YTDYVATRWYRaPE----LLvGDtqYG~pVDiWAiGCv~aEl~  196 (396)
T KOG0593|consen  129 PENILITQ--NGVVKLCDFGFARTLSA-PGDNYTDYVATRWYRAPE----LLVGDTQYGKPVDIWAIGCVFAELL  196 (396)
T ss_pred             hhheEEec--CCcEEeccchhhHhhcC-CcchhhhhhhhhhccChh----hhcccCcCCCcccchhhhHHHHHHh
Confidence            99999996  89999999999999983 223455443322222232    2222123456789999886554443

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=5.4e-14  Score=151.17  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=119.3

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|.||+|+.  +|+.||||+.+......                                 ......+..|...+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~---------------------------------~~~~~~~~~E~~~l   47 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVS---------------------------------RSEVTHTLAERTVL   47 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHHH
Confidence            68999999999998  58999999875410000                                 00011233455555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHP  456 (760)
                      .++     +++++.-...+.......++||||++|++|.+..... ..++.......+  +-..+..+|..|++|+|+||
T Consensus        48 ~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp  121 (312)
T cd05585          48 AQV-----NCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQRE-GRFDLSRARFYTAELLCALENLHKFNVIYRDLKP  121 (312)
T ss_pred             HhC-----CCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCH
Confidence            544     2333221111223345679999999999998765322 223333322222  22347889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .||+++.  ++.++|+|||++.........      .....+...++++++......+...|++++...+.+++.
T Consensus       122 ~Nili~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~t  188 (312)
T cd05585         122 ENILLDY--QGHIALCDFGLCKLNMKDDDK------TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLT  188 (312)
T ss_pred             HHeEECC--CCcEEEEECcccccCccCCCc------cccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHh
Confidence            9999985  789999999998754332211      011235677888888776666778899999987776654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.54  E-value=4.2e-14  Score=152.80  Aligned_cols=187  Identities=16%  Similarity=0.071  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||+.++.....                                 ......+..|.+
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~l~~e~~   51 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA---------------------------------RDEVESLMCEKR   51 (324)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHH
Confidence            4799999999999998  58999999976521000                                 001112333433


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .++.+. .+.+..-+.+...+ ......++||||++|++|......  ..++.......+  +-..+..+|..|++|+|+
T Consensus        52 ~~~~~~-~l~hp~i~~~~~~~-~~~~~~~lv~E~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdl  127 (324)
T cd05589          52 IFETAN-SERHPFLVNLFACF-QTEDHVCFVMEYAAGGDLMMHIHT--DVFSEPRAVFYAACVVLGLQYLHENKIVYRDL  127 (324)
T ss_pred             HHHhcc-ccCCCChhceeeEE-EcCCEEEEEEcCCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCC
Confidence            333322 12222222222222 345667999999999998775432  233433333222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||+++.  ++.++|+|||++.........      .....+...++++++...+..+...|+++++-.+.+++
T Consensus       128 kp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  195 (324)
T cd05589         128 KLDNLLLDT--EGFVKIADFGLCKEGMGFGDR------TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEML  195 (324)
T ss_pred             CHHHeEECC--CCcEEeCcccCCccCCCCCCc------ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHH
Confidence            999999986  889999999988754322111      01123567788888887666677889999998776665

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.54  E-value=2.9e-14  Score=154.09  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=118.7

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.++.....                                 ......+..|.+.
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA---------------------------------KDEVAHTLTENRV   48 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  68999999976521100                                 0000112334444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaDp  454 (760)
                      +..+     +++++.-...+.......+|||||++|++|.+..... ..++...+....  +-..+..+|. .|++|+|+
T Consensus        49 l~~~-----~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDi  122 (325)
T cd05594          49 LQNS-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDL  122 (325)
T ss_pred             HHhC-----CCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCC
Confidence            4433     2333322222223445679999999999998754322 223333332222  2334788996 79999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++.++|+|||++.........      .....++..++++++...+......|+++++..+.+++
T Consensus       123 kp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~  190 (325)
T cd05594         123 KLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM  190 (325)
T ss_pred             CCCeEEECC--CCCEEEecCCCCeecCCCCcc------cccccCCcccCCHHHHccCCCCCccccccccceeeeec
Confidence            999999985  889999999998754322111      01123677888899887777778899999987665554

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.53  E-value=3.8e-14  Score=153.18  Aligned_cols=184  Identities=16%  Similarity=0.130  Sum_probs=116.4

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||+|+........                                 ......+..|...
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILK---------------------------------KKEEKHIMSERNV   48 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  57899999875410000                                 0000011112111


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~GffHaDp  454 (760)
                         +.+.+.+ +++.-...+.......+++|||++|++|.++.... .......+   +..++ ..+..+|..|++|+|+
T Consensus        49 ---~l~~~~h-~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~-~~L~~lH~~giiHrDl  122 (325)
T cd05602          49 ---LLKNVKH-PFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIA-SALGYLHSLNIVYRDL  122 (325)
T ss_pred             ---HHHhCCC-CCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHH-HHHHHHHHCCeEecCC
Confidence               1122222 32221112223345679999999999998765322 12222222   22222 3478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||+||+++.  ++.++|+|||++.........      .....+++.++++++..........|++++.-.+.+++
T Consensus       123 kp~Nili~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~  190 (325)
T cd05602         123 KPENILLDS--QGHIVLTDFGLCKENIEHNGT------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML  190 (325)
T ss_pred             CHHHeEECC--CCCEEEccCCCCcccccCCCC------cccccCCccccCHHHHcCCCCCCccccccccHHHHHHh
Confidence            999999985  889999999998764322110      11123677888999887777777899999988776665

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.53  E-value=4.6e-14  Score=152.74  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=119.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|+||+|..  +|+.||||+.+......                                 ++-...+..|..
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   52 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ---------------------------------DDDVECTMVEKR   52 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999998  58999999876421000                                 000111233433


Q ss_pred             HHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+    .+++.+  +..+  .......+|||||++|++|.+..... ..++...+....  +-..+..+|..|++|+
T Consensus        53 ~l~~~----~~~~~i--~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~~~ivHr  125 (323)
T cd05615          53 VLALQ----DKPPFL--TQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQV-GKFKEPQAVFYAAEISVGLFFLHRRGIIYR  125 (323)
T ss_pred             HHHhc----cCCCch--hheeeEEecCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecc
Confidence            33322    223322  2222  23345679999999999998765321 123333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+||+++.  ++.++|+|||++.........      .....++..++++++...+..+...|++++.-.+.+++.
T Consensus       126 Dikp~Nill~~--~~~ikL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ellt  196 (323)
T cd05615         126 DLKLDNVMLDS--EGHIKIADFGMCKEHMVDGVT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLA  196 (323)
T ss_pred             CCCHHHeEECC--CCCEEEeccccccccCCCCcc------ccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHh
Confidence            99999999985  789999999998764322110      011235677888988877777788999999987776653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.53  E-value=1.5e-13  Score=138.78  Aligned_cols=176  Identities=25%  Similarity=0.344  Sum_probs=113.5

Q ss_pred             EEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCC--ccccchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004334          309 VHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECASVLYQEAANAELFASNF  385 (760)
Q Consensus       309 VhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~--~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~  385 (760)
                      ||.|.. +|++||||+-+.+...- ..       ........ +...  .....|..+.   .....+|+++|.++.+  
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~F-k~-------~~~y~~~~-~r~~~~~~~~~~~~~~---~~~~~~E~~~L~~l~~--   67 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSF-KR-------RKKYRDYD-YRFKKYRHKSSWRYLI---REWAKKEFRNLKRLYE--   67 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS--H-------HHHHTTTS-TTSTTC--G--CHHHH---HHHHHHHHHHHHHCCC--
T ss_pred             EEEEECCCCCEEEEEEeccCceEE-EE-------eeeeeccc-chhcccccccCHHHHH---HHHHHHHHHHHHHHHH--
Confidence            899998 79999999998874322 21       12222211 1100  0122333333   3345789999998843  


Q ss_pred             CCCCceeeceeeeccCCCeEEEEeecC--CCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEec
Q 004334          386 KDMDYVKVPTIFWEYTTPQILTMEYVP--GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD  463 (760)
Q Consensus       386 ~~~~~V~VP~vy~e~st~~vLVME~ie--G~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~  463 (760)
                         .++.+|++|  ..++.+||||||+  |.++..+........+...+...+++....++|..|++||||++.||++.+
T Consensus        68 ---~Gv~vP~p~--~~~~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~  142 (188)
T PF01163_consen   68 ---AGVPVPKPY--DYNRNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDD  142 (188)
T ss_dssp             ---TT-SS--EE--EEETTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEET
T ss_pred             ---CCccCCcEE--EEeCCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeec
Confidence               458899998  3468899999999  998887765443345677888888888888889999999999999999984


Q ss_pred             cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          464 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       464 ~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                         +++.+||||.+...+...-..       ++.+|.+.+...+...|..
T Consensus       143 ---~~~~iIDf~qav~~~~p~a~~-------~l~RDi~ni~~fF~~~~~~  182 (188)
T PF01163_consen  143 ---GKVYIIDFGQAVDSSHPNAEE-------LLRRDIENIIRFFKKKGVQ  182 (188)
T ss_dssp             ---TCEEE--GTTEEETTSTTHHH-------HHHHHHHHHHHHHHCCC--
T ss_pred             ---ceEEEEecCcceecCCccHHH-------HHHHHHHHHHHHHHHhCCC
Confidence               599999999998887543322       3457888888888877753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.53  E-value=6.3e-14  Score=151.22  Aligned_cols=184  Identities=19%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 ++.......|.+.
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI---------------------------------DDDVECTMVEKRV   48 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------cchHHHHHHHHHH
Confidence            589999999999999  58999999877631100                                 0000112233333


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +...   . +++.  +++.+.  ......++||||++|++|.+..... ...+........  +-..+..+|..|++|+|
T Consensus        49 l~~~---~-~~~~--i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrD  121 (316)
T cd05620          49 LALA---W-ENPF--LTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHSKGIIYRD  121 (316)
T ss_pred             HHhc---c-CCCC--ccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecC
Confidence            3221   1 2222  333332  3345679999999999998764322 223333332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++.........      .....++..++++++...+..++..|++++...+.+++.
T Consensus       122 lkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~  191 (316)
T cd05620         122 LKLDNVMLDR--DGHIKIADFGMCKENVFGDNR------ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLI  191 (316)
T ss_pred             CCHHHeEECC--CCCEEeCccCCCeecccCCCc------eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHh
Confidence            9999999985  789999999988653211110      011235777888998877777788999999988777653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.53  E-value=8.4e-14  Score=151.22  Aligned_cols=186  Identities=17%  Similarity=0.213  Sum_probs=119.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|+||+|+.  +|+.||||+.+..       +.         .                 .......+.+|..
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-------~~---------~-----------------~~~~~~~~~~e~~   53 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKW-------EM---------L-----------------KRAETACFREERD   53 (331)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHH-------HH---------h-----------------hhhhHHHHHHHHH
Confidence            5799999999999998  5899999987531       00         0                 0001112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     ++++  ++..+.  +.....++||||++|++|.++.......+....+...+  +-..+..+|..|++|+
T Consensus        54 ~l~~~-----~~~~--i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~  126 (331)
T cd05597          54 VLVNG-----DRRW--ITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHR  126 (331)
T ss_pred             HHHhC-----CCCC--CCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEC
Confidence            44332     2222  233332  23345799999999999998764322223333222222  2344788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~~~~~  527 (760)
                      |+||.||+++.  ++.++|+|||++..+.......     .....+...++++++...     +..+...|++++.-.+.
T Consensus       127 dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~  199 (331)
T cd05597         127 DIKPDNVLLDK--NGHIRLADFGSCLRLLADGTVQ-----SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMY  199 (331)
T ss_pred             CCCHHHEEECC--CCCEEEEECCceeecCCCCCcc-----ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHH
Confidence            99999999975  7899999999987765432210     011235667788887752     34556789999988776


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       200 el~~  203 (331)
T cd05597         200 EMLY  203 (331)
T ss_pred             HHhh
Confidence            6653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.53  E-value=8.9e-14  Score=152.16  Aligned_cols=181  Identities=14%  Similarity=0.086  Sum_probs=121.9

Q ss_pred             cccccccccEEEEEEE--C-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|.||+|++  + +..||||+.......                                 ..+....+.+|.
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~---------------------------------~~~~~~~~~~E~   82 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKII---------------------------------KQKQVDHVFSER   82 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhh---------------------------------hhhhHHHHHHHH
Confidence            6899999999999987  2 368999976431000                                 001112234565


Q ss_pred             HHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCccc
Q 004334          376 ANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~GffH  451 (760)
                      ..+..+.     +++ +.+...+ ......++||||++|++|.++.... ..++....   +..+ -..+..+|..|++|
T Consensus        83 ~~l~~l~-----hp~Iv~~~~~~-~~~~~~~lv~Ey~~~g~L~~~i~~~-~~~~~~~~~~~~~qi-~~aL~~LH~~~ivH  154 (340)
T PTZ00426         83 KILNYIN-----HPFCVNLYGSF-KDESYLYLVLEFVIGGEFFTFLRRN-KRFPNDVGCFYAAQI-VLIFEYLQSLNIVY  154 (340)
T ss_pred             HHHHhCC-----CCCCcceEEEE-EeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHH-HHHHHHHHHCCeEc
Confidence            5555542     232 2222222 3345579999999999998865422 22333222   2222 23478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||+|||++.  +|.++|+|||++..++....         ...+++.++++++......+...|+++++-.+.+++.
T Consensus       155 rDLkp~NILl~~--~~~ikL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~  223 (340)
T PTZ00426        155 RDLKPENLLLDK--DGFIKMTDFGFAKVVDTRTY---------TLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILV  223 (340)
T ss_pred             cCCCHHHEEECC--CCCEEEecCCCCeecCCCcc---------eecCChhhcCHHHHhCCCCCccccccchhhHHHHHhc
Confidence            999999999985  88999999999987764321         1246778899998876666778899999987776653

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.53  E-value=2e-14  Score=155.36  Aligned_cols=185  Identities=18%  Similarity=0.246  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+....+.+|..
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA---------------------------------QETVSFFEEERD   53 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999998  58999999876421000                                 011122334444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     +++.  ++.++.  ......+|||||++|++|.++.......++...+...+  +-..++.+|..|++|+
T Consensus        54 i~~~~-----~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~  126 (330)
T cd05601          54 ILSIS-----NSPW--IPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHR  126 (330)
T ss_pred             HHHhC-----CCCC--CcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcc
Confidence            43332     2222  233322  33456799999999999998764332334433332222  3345788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCCCCCCChHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~------lG~~~~~~D~~al~~~~  526 (760)
                      |+||.||+++.  +|.++|+|||++..+......     ......++..++++++..      .+..+...|+++++-.+
T Consensus       127 Dlkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il  199 (330)
T cd05601         127 DIKPENVLIDR--TGHIKLADFGSAARLTANKMV-----NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIA  199 (330)
T ss_pred             cCchHheEECC--CCCEEeccCCCCeECCCCCce-----eeecccCCccccCHHHhccccccccCCCCCcceeeccccee
Confidence            99999999985  889999999999887643221     011123566788888775      34445678999988766


Q ss_pred             HHHH
Q 004334          527 QFFL  530 (760)
Q Consensus       527 ~~~l  530 (760)
                      .+++
T Consensus       200 ~el~  203 (330)
T cd05601         200 YEMI  203 (330)
T ss_pred             eeec
Confidence            5543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.53  E-value=6.4e-14  Score=151.31  Aligned_cols=186  Identities=18%  Similarity=0.164  Sum_probs=117.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+..+.....                                 ......+..|...
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILK---------------------------------KKEQKHIMAERNV   48 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999999  69999999875521000                                 0000111122111


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpH  455 (760)
                         +.+.+.+..-+.+...+ ......++||||++|++|.+..... ..+....+...  .+-..+..+|..|++|+|+|
T Consensus        49 ---~~~~l~hp~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~givH~dik  123 (323)
T cd05575          49 ---LLKNVKHPFLVGLHYSF-QTADKLYFVLDYVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHSLNIIYRDLK  123 (323)
T ss_pred             ---HHhhCCCCCCCCeeEEE-EeCCEEEEEEcCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC
Confidence               11222222222222222 3345679999999999998765322 12333322221  12334788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  ++.++|+|||++.........      .....+.+.+++++...-+..+...|+++++..+.+++.
T Consensus       124 p~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~  191 (323)
T cd05575         124 PENILLDS--QGHVVLTDFGLCKEGIEHSKT------TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLY  191 (323)
T ss_pred             HHHeEECC--CCcEEEeccCCCcccccCCCc------cccccCChhhcChhhhcCCCCCccccccccchhhhhhhc
Confidence            99999985  889999999998754222110      011235677888888776667778999999987776653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.53  E-value=6.6e-14  Score=151.80  Aligned_cols=184  Identities=17%  Similarity=0.117  Sum_probs=120.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+.+......                                 .+....+.+|...
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHD---------------------------------DEDIDWVQTEKHV   48 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  58999999976531100                                 0111123344444


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.++    .+++.  ++.++.  +.....++||||++|++|.+..... ..++...+....  +-..+..+|..|++|+|
T Consensus        49 ~~~~----~~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~al~~lH~~~ivHrD  121 (327)
T cd05617          49 FEQA----SSNPF--LVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ-RKLPEEHARFYAAEICIALNFLHERGIIYRD  121 (327)
T ss_pred             HHhh----cCCCC--EeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccC
Confidence            4433    22333  233332  3345679999999999998754321 123333222221  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..........      ....+...++++++...+..+...|+++++..+.+++.
T Consensus       122 lkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~  191 (327)
T cd05617         122 LKLDNVLLDA--DGHIKLTDYGMCKEGLGPGDTT------STFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMA  191 (327)
T ss_pred             CCHHHEEEeC--CCCEEEeccccceeccCCCCce------ecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHh
Confidence            9999999986  7899999999987532211100      11235677888888877667778999999988777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.53  E-value=1.2e-13  Score=149.71  Aligned_cols=187  Identities=15%  Similarity=0.098  Sum_probs=118.5

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|++       +++.||||+.+++....                                   ....+
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   57 (338)
T cd05102          13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATAS-----------------------------------EHKAL   57 (338)
T ss_pred             eEeccCCcceEEEEEEeccCCcccchhhheeccccccchH-----------------------------------HHHHH
Confidence            6799999999999975       25789999876532110                                   01123


Q ss_pred             HHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-------------------------
Q 004334          372 YQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-------------------------  425 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-------------------------  425 (760)
                      .+|...+.++.    ++++ +.+...+.......+++|||++|++|.++......                         
T Consensus        58 ~~E~~~l~~l~----~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (338)
T cd05102          58 MSELKILIHIG----NHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRV  133 (338)
T ss_pred             HHHHHHHHHhc----cCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhcc
Confidence            44555555442    2222 22222222223456899999999999886542110                         


Q ss_pred             ------------------------------------CCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeccCCC
Q 004334          426 ------------------------------------GVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGG  467 (760)
Q Consensus       426 ------------------------------------g~d~~~la~~--lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g  467 (760)
                                                          .+....+...  .+...+..+|..|++|+|+||.||+++.  ++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~--~~  211 (338)
T cd05102         134 DRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSE--NN  211 (338)
T ss_pred             ccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcC--CC
Confidence                                                0111222221  2233478899999999999999999985  78


Q ss_pred             cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          468 RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       468 ~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      .++|+|||++..+.......    ..+.......+++++....+..+...|++++.-.+.+++
T Consensus       212 ~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~  270 (338)
T cd05102         212 VVKICDFGLARDIYKDPDYV----RKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIF  270 (338)
T ss_pred             cEEEeecccccccccCcchh----cccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHH
Confidence            99999999998764332110    001112234577888777777788899999998776654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.53  E-value=4.1e-14  Score=157.53  Aligned_cols=190  Identities=18%  Similarity=0.189  Sum_probs=139.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|.||+||+|+.  +|+.+|+|+........                                 .+....+.+|.+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~---------------------------------~~~~~~v~~Ev~   87 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG---------------------------------KEDREDVRREVA   87 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccc---------------------------------cccHHHHHHHHH
Confidence            5799999999999999  59999999875421100                                 001234567777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHH--HHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR--YAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~--~lv~~~L~qI~~~GffHaDp  454 (760)
                      .++++..   +...|.++.+| +..+..+||||+++|+.|.|.....  .+.....+.  ..+-..++++|..|++|+|+
T Consensus        88 il~~l~~---hpniv~l~~~~-e~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~gvvHrDl  161 (382)
T KOG0032|consen   88 ILQQLSG---HPNIVQLKDAF-EDPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSLGVVHRDL  161 (382)
T ss_pred             HHHhccC---CCCEEEEEEEE-EcCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence            7777643   44557777777 4556789999999999999854322  233332222  22334578899999999999


Q ss_pred             CCCcEEEeccCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNS  532 (760)
Q Consensus       455 HPGNILV~~~~~--g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~  532 (760)
                      ||+|+|+....+  ++++++|||++..+.+..+       ..-..+.+.+++++.+......+..|+++++...+.++..
T Consensus       162 KpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~-------~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G  234 (382)
T KOG0032|consen  162 KPENLLLASKDEGSGRIKLIDFGLAKFIKPGER-------LHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSG  234 (382)
T ss_pred             CHHHeeeccccCCCCcEEEeeCCCceEccCCce-------EeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhC
Confidence            999999975333  5899999999999987322       2234689999999999877778899999999998888766


Q ss_pred             HH
Q 004334          533 FE  534 (760)
Q Consensus       533 ~~  534 (760)
                      +.
T Consensus       235 ~~  236 (382)
T KOG0032|consen  235 VP  236 (382)
T ss_pred             CC
Confidence            43

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.53  E-value=3.1e-15  Score=156.10  Aligned_cols=197  Identities=19%  Similarity=0.252  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCC
Q 004334          276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (760)
Q Consensus       276 ~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~  353 (760)
                      +..+.=+..|.++++++|+-..  .+|.||+|.||+|.+  .|+.||||-..-      +.                   
T Consensus        18 ~~~KLd~~sL~K~PEEVFDi~~--KLGEGSYGSV~KAIH~EsG~v~AIK~VPV------~s-------------------   70 (502)
T KOG0574|consen   18 DGFKLDSSALNKPPEEVFDIVG--KLGEGSYGSVHKAIHRESGHVLAIKKVPV------DT-------------------   70 (502)
T ss_pred             cccccChhhhcCChHHHHHHHH--HhcCCcchHHHHHHHhccCcEEEEEecCc------cc-------------------
Confidence            3444556778899999987654  699999999999999  699999994321      22                   


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc--CCCeEEEEeecCCCchhhhhhhhhcCCCHHH
Q 004334          354 DGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKR  431 (760)
Q Consensus       354 ~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~  431 (760)
                           |+.+|+.|+        ..|+++.     .  -+|-+.|..|  .+..++|||||..++++|+..++...+...+
T Consensus        71 -----DLQEIIKEI--------SIMQQC~-----S--~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~E  130 (502)
T KOG0574|consen   71 -----DLQEIIKEI--------SIMQQCK-----S--KYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQE  130 (502)
T ss_pred             -----hHHHHHHHH--------HHHHHcC-----C--chhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHH
Confidence                 333444333        3444441     1  2344445444  3678999999999999999988887777777


Q ss_pred             HHHHHHHHH--HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004334          432 LGRYAVESY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       432 la~~lv~~~--L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~  509 (760)
                      ++..+-...  |+++|...-+|+|+|.||||++.  +|..+|.|||.++++++.+...      ..+-+++-.|++++++
T Consensus       131 Is~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT--~G~AKLADFGVAGQLTDTMAKR------NTVIGTPFWMAPEVI~  202 (502)
T KOG0574|consen  131 ISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNT--DGIAKLADFGVAGQLTDTMAKR------NTVIGTPFWMAPEVIE  202 (502)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcc--cchhhhhhccccchhhhhHHhh------CccccCcccccHHHHH
Confidence            776654443  77889888999999999999985  8999999999999998864321      2234677777777654


Q ss_pred             -cCCCCCCCChHHHHHHHHH
Q 004334          510 -MGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       510 -lG~~~~~~D~~al~~~~~~  528 (760)
                       .|+ ....|.+++.-.+-+
T Consensus       203 EIGY-~~~ADIWSLGITaIE  221 (502)
T KOG0574|consen  203 EIGY-DTKADIWSLGITAIE  221 (502)
T ss_pred             Hhcc-chhhhHhhhcchhhh
Confidence             565 445788887755433

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.53  E-value=7.9e-14  Score=151.42  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=119.7

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||+|+.+......                                 .+....+..|...
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~E~~~   48 (329)
T cd05618           2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKELVND---------------------------------DEDIDWVQTEKHV   48 (329)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcc---------------------------------hhHHHHHHHHHHH
Confidence            689999999999998  58999999976532110                                 0001112333333


Q ss_pred             HHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.+.    .+++++ .+-.. ....+..++||||++|++|.+..... ..++........  +...+..+|..|++|+|+
T Consensus        49 l~~~----~~hp~iv~~~~~-~~~~~~~~lv~E~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Di  122 (329)
T cd05618          49 FEQA----SNHPFLVGLHSC-FQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERGIIYRDL  122 (329)
T ss_pred             HHhc----CCCCcCCceeeE-EEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence            3222    123332 22222 23446679999999999997754321 223333322222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++.........      .....++..++++++...+..+...|++++...+.+++.
T Consensus       123 kp~Nili~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  191 (329)
T cd05618         123 KLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  191 (329)
T ss_pred             CHHHEEECC--CCCEEEeeCCccccccCCCCc------cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhh
Confidence            999999986  889999999998754221110      011245777888888877777778999999988777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.52  E-value=9.6e-14  Score=150.65  Aligned_cols=183  Identities=15%  Similarity=0.125  Sum_probs=119.6

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||||+.+......                                 .+....+..|...
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~---------------------------------~~~~~~~~~e~~i   48 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVND---------------------------------DEDIDWVQTEKHV   48 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHHHHHHHHH
Confidence            589999999999998  58999999976531100                                 0001122334333


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +..+    .+++++  +.++.  ......+|+|||++|++|.+.... ...+....+....  +-..+..+|..|++|+|
T Consensus        49 l~~~----~~hp~I--v~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~d  121 (329)
T cd05588          49 FETA----SNHPFL--VGLHSCFQTESRLFFVIEFVSGGDLMFHMQR-QRKLPEEHARFYSAEISLALNFLHERGIIYRD  121 (329)
T ss_pred             HHhc----cCCCCC--CceEEEEEcCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecC
Confidence            3332    223332  23332  234567999999999999775432 1223333332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~-~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++.... .....       ....++..++++++...+..+...|++++...+.+++.
T Consensus       122 lkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~  191 (329)
T cd05588         122 LKLDNVLLDA--EGHIKLTDYGMCKEGIRPGDTT-------STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  191 (329)
T ss_pred             CCHHHeEECC--CCCEEECcCccccccccCCCcc-------ccccCCccccCHHHHcCCCCCCccceechHHHHHHHHH
Confidence            9999999985  7899999999987532 11110       11245777888888877777778999999988777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=3.2e-14  Score=154.49  Aligned_cols=190  Identities=17%  Similarity=0.169  Sum_probs=123.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 .+....+..|..
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK---------------------------------RNQIAHVRAERD   53 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------ccHHHHHHHHHH
Confidence            5799999999999999  59999999876421000                                 001112334444


Q ss_pred             HHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+.     +++  +++++  .......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        54 ~l~~~~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~giiH~  125 (350)
T cd05573          54 ILADAD-----SPW--IVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLGFIHR  125 (350)
T ss_pred             HHHhcC-----CCC--ccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecc
Confidence            444432     222  22222  22345679999999999998875432 223333322222  2334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH-----------------------HHHHHHHhhcCHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-----------------------LEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l-----------------------~~l~~al~~~D~~~v~~~l~~  509 (760)
                      |+||.||+++.  ++.++|+|||++..+........                       .........++..++++++..
T Consensus       126 Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  203 (350)
T cd05573         126 DIKPDNILIDA--DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLR  203 (350)
T ss_pred             CCCHHHeEECC--CCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHc
Confidence            99999999986  88999999999987765430000                       000011234677888999887


Q ss_pred             cCCCCCCCChHHHHHHHHHHHH
Q 004334          510 MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       510 lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ....++..|+++++-.+.+++.
T Consensus       204 ~~~~~~~~DiwSlG~il~ell~  225 (350)
T cd05573         204 GTPYGLECDWWSLGVILYEMLY  225 (350)
T ss_pred             CCCCCCceeeEecchhhhhhcc
Confidence            7777888999999987766653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=7.1e-14  Score=154.34  Aligned_cols=190  Identities=17%  Similarity=0.199  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....  +...                               .+....+.+|..
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~--~~~~-------------------------------~~~~~~~~~E~~   53 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKS--EMFK-------------------------------KDQLAHVKAERD   53 (377)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHH--HHHH-------------------------------hHHHHHHHHHHH
Confidence            6799999999999998  6999999986431  0000                               011122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      .+.++     ++++  |++++.  ......+|||||++|++|.++.... ..+....+...  .+-..+..+|..|++|+
T Consensus        54 il~~l-----~hp~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH~~givHr  125 (377)
T cd05629          54 VLAES-----DSPW--VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY-DTFSEDVTRFYMAECVLAIEAVHKLGFIHR  125 (377)
T ss_pred             HHHhC-----CCCC--cceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            55443     2232  333333  3345679999999999998865321 22332222211  12234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH-HHHH---------------------------------------
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAF---------------------------------------  492 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l-~~l~---------------------------------------  492 (760)
                      |+||.||+++.  ++.++|+|||++..+.......+ ..+.                                       
T Consensus       126 Dlkp~NIll~~--~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T cd05629         126 DIKPDNILIDR--GGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRL  203 (377)
T ss_pred             CCCHHHEEECC--CCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence            99999999985  88999999999864432111000 0000                                       


Q ss_pred             -HHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          493 -YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       493 -~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                       ..-..++..+++++++.....+...|+++++-.+.+++.
T Consensus       204 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  243 (377)
T cd05629         204 MAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLI  243 (377)
T ss_pred             cccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhc
Confidence             000236677888988876666778899999887766653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.52  E-value=8.8e-14  Score=153.98  Aligned_cols=184  Identities=21%  Similarity=0.257  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+....  +...                               ......+.+|..
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~--~~~~-------------------------------~~~~~~~~~e~~   95 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKF--EMIK-------------------------------RSDSAFFWEERD   95 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEEEEEEHH--Hhhh-------------------------------hHHHHHHHHHHH
Confidence            6799999999999999  5899999986431  0000                               000111233444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     ++++  +++++.  ......++||||++|++|.++....  ..+...+....  +-..+..+|..|++|+
T Consensus        96 i~~~~-----~hp~--iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHr  166 (371)
T cd05622          96 IMAFA-----NSPW--VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHSMGFIHR  166 (371)
T ss_pred             HHHhC-----CCCC--CCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCEEeC
Confidence            34332     2232  223332  2334579999999999998875432  23333322221  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCChHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l----G~~~~~~D~~al~~~~~~  528 (760)
                      |+||.||+++.  ++.++|+|||++..+.......     .....+++.+++++++..    +..+...|+++++-.+++
T Consensus       167 DLkp~NIll~~--~~~ikL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilye  239 (371)
T cd05622         167 DVKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYE  239 (371)
T ss_pred             CCCHHHEEECC--CCCEEEEeCCceeEcCcCCccc-----ccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHH
Confidence            99999999985  8899999999998875432110     011246778889988764    235677899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       240 ll~  242 (371)
T cd05622         240 MLV  242 (371)
T ss_pred             HHh
Confidence            654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.52  E-value=6.6e-14  Score=155.02  Aligned_cols=185  Identities=19%  Similarity=0.211  Sum_probs=120.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+....-  ...                               ..-...+.+|..
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~--~~~-------------------------------~~~~~~~~~e~~   95 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFE--MIK-------------------------------RSDSAFFWEERD   95 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH--hhh-------------------------------hhhHHHHHHHHH
Confidence            5799999999999999  58999999864310  000                               000112233444


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+..+     +++++ .+... .......++||||++|++|.++....  ..+...+...  .+-..+..+|..|++|+|
T Consensus        96 i~~~~-----~hp~iv~~~~~-~~~~~~~~lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qil~aL~~LH~~~IvHrD  167 (370)
T cd05621          96 IMAFA-----NSPWVVQLFCA-FQDDKYLYMVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEVVLALDAIHSMGLIHRD  167 (370)
T ss_pred             HHHhC-----CCCCEeeEEEE-EEcCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCeEecC
Confidence            44333     23332 22222 23345679999999999999876432  2333322221  223447889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l----G~~~~~~D~~al~~~~~~~  529 (760)
                      +||.|||++.  ++.++|+|||++..+.......     .....+++.+++++++.-    +..+...|+++++..+.++
T Consensus       168 LKp~NILl~~--~~~~kL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyel  240 (370)
T cd05621         168 VKPDNMLLDK--HGHLKLADFGTCMKMDETGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEM  240 (370)
T ss_pred             CCHHHEEECC--CCCEEEEecccceecccCCcee-----cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHH
Confidence            9999999985  8899999999998875432110     012346778888888753    2356678999999877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       241 l~  242 (370)
T cd05621         241 LV  242 (370)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.52  E-value=2e-13  Score=150.18  Aligned_cols=203  Identities=19%  Similarity=0.165  Sum_probs=130.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-||+|++|.|-.|+.  +|+.|||||....-            ....+   ..+.......      ... +..++|..
T Consensus       103 ~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~------------~~~~~---~~~~~~a~~~------~~~-ekv~~EIa  160 (576)
T KOG0585|consen  103 KEIGSGQYGKVKLARDEVDGKLYAIKILPKKE------------LRRQY---GFPRQPAMKL------MPI-EKVRREIA  160 (576)
T ss_pred             hhhcCCccceEEEEeecCCCcEEEEEeechhh------------hhhhc---cccccccccc------CcH-HHHHHHHH
Confidence            4699999999999998  69999999975410            00000   0010000000      011 23467778


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      .|+++.    |.+-|..-+|+.+- ++..|||.|||..+++...-.... ...+..+..-+-+-.-|+++|.+|++|||+
T Consensus       161 ilKkl~----H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDI  236 (576)
T KOG0585|consen  161 ILKKLH----HPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDI  236 (576)
T ss_pred             HHHhcC----CcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeecccc
Confidence            888773    33346666666543 567899999999998876432221 222222212222334488999999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~----~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|+|++.  +|++++.|||.+-..+...-+..-+.+.. ..+++..+++++...|-    .....|+|+++..++-|+
T Consensus       237 KPsNLLl~~--~g~VKIsDFGVs~~~~~~~~~~~d~~L~~-tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCll  313 (576)
T KOG0585|consen  237 KPSNLLLSS--DGTVKISDFGVSNEFPQGSDEGSDDQLSR-TVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLL  313 (576)
T ss_pred             chhheEEcC--CCcEEeeccceeeecccCCccccHHHHhh-cCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhh
Confidence            999999986  89999999999886633221111112222 56899999999887643    234569999998887665

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.52  E-value=6.5e-14  Score=151.02  Aligned_cols=185  Identities=18%  Similarity=0.150  Sum_probs=115.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|+||+|+.  +|+.||||+........                                 ......+..|...
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILK---------------------------------KKEQNHIMAERNV   48 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH---------------------------------hhHHHHHHHHHHH
Confidence            589999999999999  58999999875421000                                 0000111122111


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpH  455 (760)
                         +.+.+.+..-+.+-..+ ......++||||++|++|.+..... ..+....+...  .+-..+..+|..|++|+|+|
T Consensus        49 ---~l~~~~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlk  123 (321)
T cd05603          49 ---LLKNLKHPFLVGLHYSF-QTAEKLYFVLDYVNGGELFFHLQRE-RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLK  123 (321)
T ss_pred             ---HHHhCCCCCccceeeEE-EcCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC
Confidence               11122222222222222 3345679999999999997654321 22333222221  22344788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  +|.++|+|||++.........      .....+...+++++.......+...|++++...+.+++
T Consensus       124 p~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~  190 (321)
T cd05603         124 PENILLDS--QGHVVLTDFGLCKEGVEPEET------TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEML  190 (321)
T ss_pred             HHHeEECC--CCCEEEccCCCCccCCCCCCc------cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhh
Confidence            99999985  889999999998753221110      01123567788888877666777899999988776665

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.52  E-value=5.5e-14  Score=155.50  Aligned_cols=190  Identities=16%  Similarity=0.180  Sum_probs=119.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..       +..                          ..+....+.+|..
T Consensus         7 ~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~-------~~~--------------------------~~~~~~~~~~E~~   53 (382)
T cd05625           7 KTLGIGAFGEVCLARKVDTKALYAMKTLRKK-------DVL--------------------------LRNQVAHVKAERD   53 (382)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEeHH-------Hhh--------------------------hHHHHHHHHHHHH
Confidence            5799999999999998  5899999986541       000                          0011123345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++     ++++  |++.+..  .....+|||||++|++|.++.... ..+....+...+  +-..+..+|..|++|+
T Consensus        54 il~~~-----~h~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~al~~lH~~~ivHr  125 (382)
T cd05625          54 ILAEA-----DNEW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-GIFPEDLARFYIAELTCAVESVHKMGFIHR  125 (382)
T ss_pred             HHHhC-----CCCc--CCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            55544     2222  3333322  234579999999999998865321 122322222111  2345788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhH--------------------------------------HHHH---HH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR--------------------------------------EGLL---EA  491 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r--------------------------------------~~l~---~l  491 (760)
                      |+||.|||++.  +|.++|+|||++..+.....                                      ....   ..
T Consensus       126 DlKp~NILl~~--~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (382)
T cd05625         126 DIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRC  203 (382)
T ss_pred             CCCHHHEEECC--CCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence            99999999985  88999999999754321000                                      0000   00


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          492 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       492 ~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ...-..+.+.+++++++.-.......|+++++-.+.+++.
T Consensus       204 ~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~ellt  243 (382)
T cd05625         204 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV  243 (382)
T ss_pred             cccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHh
Confidence            0001235677888888766666778899999988776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.52  E-value=5.5e-14  Score=156.83  Aligned_cols=182  Identities=24%  Similarity=0.274  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-||.||+|.||+|+.  +++.||+|+...--+  -+.|+..                                +++|.+
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr--~~k~l~~--------------------------------l~~ev~   53 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGR--NEKELKN--------------------------------LRQEVR   53 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCC--chHHHHH--------------------------------HHHHHH
Confidence            4699999999999998  589999998533111  1122222                                233333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCH-HHHHHHHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDR-KRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~-~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    +|.+-|..-.-| |-++..++|.||+.| .|..+...+. .+.+. ..++..++ ..+..+|.+++.|+|+
T Consensus        54 i~r~l----kHpniv~m~esf-Et~~~~~vVte~a~g-~L~~il~~d~~lpEe~v~~~a~~LV-saL~yLhs~rilhrd~  126 (808)
T KOG0597|consen   54 ILRSL----KHPNIVEMLESF-ETSAHLWVVTEYAVG-DLFTILEQDGKLPEEQVRAIAYDLV-SALYYLHSNRILHRDM  126 (808)
T ss_pred             HHHhc----CCcchhhHHHhh-cccceEEEEehhhhh-hHHHHHHhccCCCHHHHHHHHHHHH-HHHHHHHhcCcccccC
Confidence            33332    111112211111 445677999999999 8887654332 22222 22333333 4588999999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      ||.||++..  +|.++|+|||+++-++...      .+..-+.+++-+|++++.+-+...-..|+++++-.++++
T Consensus       127 kPqniLl~~--~~~~KlcdFg~Ar~m~~~t------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~  193 (808)
T KOG0597|consen  127 KPQNILLEK--GGTLKLCDFGLARAMSTNT------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYEL  193 (808)
T ss_pred             CcceeeecC--CCceeechhhhhhhcccCc------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHH
Confidence            999999985  8899999999999887743      234456899999999999988888889999999877654

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.51  E-value=1.1e-13  Score=149.90  Aligned_cols=189  Identities=14%  Similarity=0.134  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|+.     +|+.||+|+.+......   +                             ......+..
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~---~-----------------------------~~~~~~~~~   53 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ---K-----------------------------AKTVEHTRT   53 (332)
T ss_pred             EEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh---h-----------------------------hhHHHHHHH
Confidence            5799999999999986     47899999875421000   0                             001112334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...+.++    .+++.+....-+.+.....+++|||++|++|.+.... ...+....+...+  +-..+..+|..|++|
T Consensus        54 e~~~l~~l----~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH  128 (332)
T cd05614          54 ERNVLEHV----RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQ-RDNFSEDEVRFYSGEIILALEHLHKLGIVY  128 (332)
T ss_pred             HHHHHHhc----cCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCcEe
Confidence            44444443    2334333222222344567899999999999876532 2223433333222  233478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.|||++.  ++.++|+|||++..+........     ....+...+++++++... ..+...|+++++-.+.+++
T Consensus       129 rDlkp~Nili~~--~~~~kl~DfG~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  201 (332)
T cd05614         129 RDIKLENILLDS--EGHVVLTDFGLSKEFLSEEKERT-----YSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELL  201 (332)
T ss_pred             cCCCHHHeEECC--CCCEEEeeCcCCccccccCCCcc-----ccccCCccccCHHHhcCCCCCCCccccccchhhhhhhh
Confidence            999999999985  78999999999876543321111     012367778888877532 2456789999998777665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       202 t  202 (332)
T cd05614         202 T  202 (332)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.51  E-value=7.9e-14  Score=151.57  Aligned_cols=198  Identities=21%  Similarity=0.239  Sum_probs=124.3

Q ss_pred             HHHhCCChhhhhcccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCcccc
Q 004334          282 EEELGAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (760)
Q Consensus       282 e~elG~~~~~iF~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~  358 (760)
                      ++|++....++.+.|.. ++||.|++|+||+|..  +|+.||||+.........                          
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------------------   56 (343)
T cd07878           3 RQELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLI--------------------------   56 (343)
T ss_pred             HHHHhHHHhhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhH--------------------------
Confidence            44555555555555543 7999999999999998  588999998765321110                          


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceee-----eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH
Q 004334          359 DWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF-----WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG  433 (760)
Q Consensus       359 ~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy-----~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la  433 (760)
                              ....+.+|.+.+.++.    +...+.+..++     .......+++||++ |.++.++....  .++...+.
T Consensus        57 --------~~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~--~l~~~~~~  121 (343)
T cd07878          57 --------HARRTYRELRLLKHMK----HENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKCQ--KLSDEHVQ  121 (343)
T ss_pred             --------HHHHHHHHHHHHHhcC----CCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhcC--CCCHHHHH
Confidence                    0011223444444432    11112222221     12234568999998 66777764322  23333332


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-
Q 004334          434 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-  510 (760)
Q Consensus       434 ~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-  510 (760)
                      ..+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++.....         ..++..++++++... 
T Consensus       122 ~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~t~~y~aPE~~~~~  190 (343)
T cd07878         122 FLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNE--DCELRILDFGLARQADDEMTG---------YVATRWYRAPEIMLNW  190 (343)
T ss_pred             HHHHHHHHHHHHHHHCCeecccCChhhEEECC--CCCEEEcCCccceecCCCcCC---------ccccccccCchHhcCC
Confidence            222  223477899999999999999999985  889999999999887654221         124555677776644 


Q ss_pred             CCCCCCCChHHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ...+...|+++++-.+.+++.
T Consensus       191 ~~~~~~~DiwslG~il~el~~  211 (343)
T cd07878         191 MHYNQTVDIWSVGCIMAELLK  211 (343)
T ss_pred             ccCCchhhhHhHHHHHHHHHH
Confidence            345667899999988777654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.51  E-value=2.2e-14  Score=160.29  Aligned_cols=188  Identities=18%  Similarity=0.241  Sum_probs=131.4

Q ss_pred             hCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       285 lG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      +..+++.+|....  -||-||||-||.|+.  +.+.||||-..-.                         .......|.+
T Consensus        20 ~k~DPEklf~dLr--EIGHGSFGAVYfArd~~n~evVAIKKMsyS-------------------------GKQs~EKWqD   72 (948)
T KOG0577|consen   20 FKDDPEKLFSDLR--EIGHGSFGAVYFARDVRNSEVVAIKKMSYS-------------------------GKQSNEKWQD   72 (948)
T ss_pred             ccCCHHHHHHHHH--HhcCCccceeEEeeccCccceeeeeecccc-------------------------ccccHHHHHH
Confidence            3457788887654  599999999999999  5789999953211                         1111224555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  440 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~  440 (760)
                      |+.|+        +.+.++    .+.+.|..-..|-. .+..+||||||=|- -+|+......++...+||....  -..
T Consensus        73 IlKEV--------rFL~~l----~HPntieYkgCyLr-e~TaWLVMEYClGS-AsDlleVhkKplqEvEIAAi~~gaL~g  138 (948)
T KOG0577|consen   73 ILKEV--------RFLRQL----RHPNTIEYKGCYLR-EHTAWLVMEYCLGS-ASDLLEVHKKPLQEVEIAAITHGALQG  138 (948)
T ss_pred             HHHHH--------HHHHhc----cCCCcccccceeec-cchHHHHHHHHhcc-HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            55544        333333    34333433333322 23469999999874 5666665556666667766543  344


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCC
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTG  517 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~  517 (760)
                      |.++|.++.+|+|+|.||||+++  .|.++|.|||.+...+|...          +.+++..|+++++-   -|-.+..+
T Consensus       139 LaYLHS~~~IHRDiKAGNILLse--~g~VKLaDFGSAsi~~PAns----------FvGTPywMAPEVILAMDEGqYdgkv  206 (948)
T KOG0577|consen  139 LAYLHSHNRIHRDIKAGNILLSE--PGLVKLADFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQYDGKV  206 (948)
T ss_pred             HHHHHHhhHHhhhccccceEecC--CCeeeeccccchhhcCchhc----------ccCCccccchhHheeccccccCCcc
Confidence            88999999999999999999986  79999999999998888532          35788899888653   37778889


Q ss_pred             ChHHHHHH
Q 004334          518 DTTAVRRT  525 (760)
Q Consensus       518 D~~al~~~  525 (760)
                      |+|+++-.
T Consensus       207 DvWSLGIT  214 (948)
T KOG0577|consen  207 DVWSLGIT  214 (948)
T ss_pred             ceeeccch
Confidence            99998754

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=5.8e-14  Score=155.50  Aligned_cols=193  Identities=19%  Similarity=0.236  Sum_probs=125.9

Q ss_pred             hhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          290 DDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       290 ~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      .+.|+.++  .||.|.|||||+|+.  +|+.||+|-.+-+..+                                  .++
T Consensus       116 ~~~feki~--kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~----------------------------------~~~  159 (560)
T KOG0600|consen  116 ADSFEKIE--KIGEGTYGQVYKARDLETGKIVALKKVRFDNEK----------------------------------EGF  159 (560)
T ss_pred             hHHHHHHH--HhcCcchhheeEeeecccCcEEEEEEeecccCC----------------------------------Ccc
Confidence            34454443  699999999999998  6999999976543211                                  122


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQ  443 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~q  443 (760)
                      -....+|...++++.    |.+-+..-.++. ..++..|||.|||+- +|.-+.......+...++   +..++ .-+..
T Consensus       160 ~~t~~REI~ILr~l~----HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl-~Gl~~  233 (560)
T KOG0600|consen  160 PITAIREIKILRRLD----HPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLL-EGLEY  233 (560)
T ss_pred             hHHHHHHHHHHHhcC----CCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHH-HHHHH
Confidence            233445666666651    222233333333 347788999999984 344333322223333332   22222 23667


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|..||+|||+|..||||+.  +|.++|.|||++..++.+....|..-+..+..+-++.+    +...-.++.+|++++.
T Consensus       234 cH~~gvlHRDIK~SNiLidn--~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELL----LG~t~Yg~aVDlWS~G  307 (560)
T KOG0600|consen  234 CHSRGVLHRDIKGSNILIDN--NGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELL----LGATSYGTAVDLWSVG  307 (560)
T ss_pred             HhhcCeeeccccccceEEcC--CCCEEeccccceeeccCCCCcccccceEEeeccChHHh----cCCcccccceeehhhh
Confidence            88999999999999999985  89999999999999998887777766666665555433    3333345678999887


Q ss_pred             HHHHHHH
Q 004334          524 RTAQFFL  530 (760)
Q Consensus       524 ~~~~~~l  530 (760)
                      =++.+++
T Consensus       308 CIl~El~  314 (560)
T KOG0600|consen  308 CILAELF  314 (560)
T ss_pred             HHHHHHH
Confidence            6655443

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.51  E-value=8.4e-14  Score=152.41  Aligned_cols=181  Identities=14%  Similarity=0.147  Sum_probs=116.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+......+                                   .....+.+|++
T Consensus        80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~E~~  124 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHED-----------------------------------TVRRQICREIE  124 (353)
T ss_pred             hhccCCCCeEEEEEEECCCCCEEEEEEEecCCcH-----------------------------------HHHHHHHHHHH
Confidence            6799999999999998  5899999987553211                                   11223445656


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHP  456 (760)
                      .+..+.    +..-+.+..+ .+.....+++|||++|++|.+......  .....++..++ ..+..+|..|++|+|+||
T Consensus       125 ~l~~l~----h~~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~i~~qi~-~aL~~LH~~~ivHrDlkp  196 (353)
T PLN00034        125 ILRDVN----HPNVVKCHDM-FDHNGEIQVLLEFMDGGSLEGTHIADE--QFLADVARQIL-SGIAYLHRRHIVHRDIKP  196 (353)
T ss_pred             HHHhCC----CCCcceeeeE-eccCCeEEEEEecCCCCcccccccCCH--HHHHHHHHHHH-HHHHHHHHCCEeecCCCH
Confidence            555542    2222222222 244566799999999998865321110  01122333333 347889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----CCCCCCChHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-----~~~~~~D~~al~~~~~~~l  530 (760)
                      .||++++  ++.++|+|||++..+.......      ....++..+++++.+...     ......|++++...+.+++
T Consensus       197 ~NIll~~--~~~~kL~DfG~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~  267 (353)
T PLN00034        197 SNLLINS--AKNVKIADFGVSRILAQTMDPC------NSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFY  267 (353)
T ss_pred             HHEEEcC--CCCEEEcccccceecccccccc------cccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHH
Confidence            9999985  7899999999988765432110      012356667777765322     2234679999998776654

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.50  E-value=1.4e-13  Score=146.68  Aligned_cols=181  Identities=17%  Similarity=0.205  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|+||+|..  +|+.||||..+-....                                    ....+.+|..
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~------------------------------------~~~~~~~e~~   69 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQ------------------------------------RRELLFNEVV   69 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchh------------------------------------HHHHHHHHHH
Confidence            4699999999999998  6999999975321100                                    0112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+...+ ......+++|||++|.+|.++....  ..+...+...+  +-..+..+|..|++|+|+
T Consensus        70 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~givH~dl  142 (292)
T cd06657          70 IMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLKALSVLHAQGVIHRDI  142 (292)
T ss_pred             HHHhc----CCcchhheeeEE-EeCCEEEEEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            44433    222222233322 2345679999999999998865322  23333332222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||+++.  ++.++++|||++..+.......      ....++..+++++...-+..++..|++++...+.+++
T Consensus       143 ~p~Nilv~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~  210 (292)
T cd06657         143 KSDSILLTH--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV  210 (292)
T ss_pred             CHHHEEECC--CCCEEEcccccceecccccccc------cccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHH
Confidence            999999985  7899999999988775543211      1122445567777766556677789999987776654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.50  E-value=2.1e-13  Score=148.04  Aligned_cols=186  Identities=17%  Similarity=0.195  Sum_probs=117.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+++.  +++.||+|+....  +...                               ......+.+|..
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~--~~~~-------------------------------~~~~~~~~~e~~   53 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKNADKVFAMKILNKW--EMLK-------------------------------RAETACFREERD   53 (332)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEeHH--HHHH-------------------------------hhHHHHHHHHHH
Confidence            5799999999999999  4789999986421  0000                               000111233333


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      .+..+     +++.  ++.++.  ......+|||||++|++|.++.......+....+...  .+...+..+|..|++|+
T Consensus        54 ~l~~~-----~~~~--i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHr  126 (332)
T cd05623          54 VLVNG-----DNQW--ITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHR  126 (332)
T ss_pred             HHhhC-----CCCC--EeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEec
Confidence            33222     2232  233332  3345679999999999999876432222333222221  22334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~~~~~  527 (760)
                      |+||.||+++.  ++.++|+|||++..+.......     .....+...++++++...     +......|++++...+.
T Consensus       127 Dlkp~Nili~~--~~~~kL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~  199 (332)
T cd05623         127 DIKPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMY  199 (332)
T ss_pred             CCCHHHEEECC--CCCEEEeecchheecccCCcce-----ecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHH
Confidence            99999999985  7899999999987664332110     111235677888887752     34566789999998776


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       200 ell~  203 (332)
T cd05623         200 EMLY  203 (332)
T ss_pred             HHhc
Confidence            6653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.49  E-value=2.7e-13  Score=147.14  Aligned_cols=182  Identities=16%  Similarity=0.170  Sum_probs=122.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|..||+|+.+.....                                   +....+.+|.+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~-----------------------------------~~~~~~~~E~~   55 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKP-----------------------------------AIRNQIIRELQ   55 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecccCH-----------------------------------HHHHHHHHHHH
Confidence            5799999999999999  5899999987764221                                   11223445655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+.++.    +..-+.+..++ ......++||||++|++|.++.... ...+...+....  +...+..+|. ++++|+|
T Consensus        56 ~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~d  129 (331)
T cd06649          56 VLHECN----SPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKEA-KRIPEEILGKVSIAVLRGLAYLREKHQIMHRD  129 (331)
T ss_pred             HHHHCC----CCCCCeEEEEE-EECCEEEEEeecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCC
Confidence            555542    22223333333 2345679999999999999875432 223333222222  2234677886 4799999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..+......        ...++..+++++....+..+...|+++++-.+.+++.
T Consensus       130 lkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~t  197 (331)
T cd06649         130 VKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAI  197 (331)
T ss_pred             CChhhEEEcC--CCcEEEccCcccccccccccc--------cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHh
Confidence            9999999986  789999999999877543221        1235667788888776667778899999987776653

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.49  E-value=1.3e-13  Score=152.62  Aligned_cols=185  Identities=20%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-       +         ..                 ..-...+.+|..
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~-------~---------~~-----------------~~~~~~~~~e~~   95 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFE-------M---------IK-----------------RSDSAFFWEERD   95 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH-------h---------hh-----------------hhhHHHHHHHHH
Confidence            6799999999999998  58999999875310       0         00                 000111234444


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+..+     ++++ +.+... .......++||||++|++|.++....  ......+...  .+-..+..+|..|++|+|
T Consensus        96 il~~~-----~h~~iv~~~~~-~~~~~~~~lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrD  167 (370)
T cd05596          96 IMAHA-----NSEWIVQLHYA-FQDDKYLYMVMEYMPGGDLVNLMSNY--DIPEKWARFYTAEVVLALDAIHSMGFIHRD  167 (370)
T ss_pred             HHHhC-----CCCCcceEEEE-EecCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCeeccC
Confidence            44433     2232 222222 23345679999999999998875322  2333322221  223447889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l----G~~~~~~D~~al~~~~~~~  529 (760)
                      +||.|||++.  ++.++|+|||++..+.......     .....+.+.++++++..-    +..+...|+++++-.+.++
T Consensus       168 Lkp~NILl~~--~~~~kL~DfG~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyel  240 (370)
T cd05596         168 VKPDNMLLDK--SGHLKLADFGTCMKMDANGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM  240 (370)
T ss_pred             CCHHHEEEcC--CCCEEEEeccceeeccCCCccc-----CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHH
Confidence            9999999985  8999999999998775432100     011246777888887653    2356678999999877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       241 lt  242 (370)
T cd05596         241 LV  242 (370)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.49  E-value=1.8e-13  Score=147.99  Aligned_cols=187  Identities=16%  Similarity=0.120  Sum_probs=119.2

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|+.     +|+.||||+.+..-.   ..+                             ......+..
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~---~~~-----------------------------~~~~~~~~~   49 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATI---VRN-----------------------------QKDTAHTKA   49 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHH---Hhh-----------------------------hhhHHHHHH
Confidence            4699999999999986     378999998764200   000                             000112345


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...++.+.    +..-+.+...+ ......+++|||++|++|.+...... .+....+...+  +-..+..+|..|++|
T Consensus        50 E~~il~~l~----hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH  123 (323)
T cd05584          50 ERNILEAVK----HPFIVDLIYAF-QTGGKLYLILEYLSGGELFMHLEREG-IFMEDTACFYLSEISLALEHLHQQGIIY  123 (323)
T ss_pred             HHHHHHhCC----CCchhceeeEE-ecCCeEEEEEeCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            555555542    22222222222 33456799999999999987653221 12222222211  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||.||+++.  ++.++|+|||++.........      .....+...++++++..........|+++++..+.+++.
T Consensus       124 ~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  195 (323)
T cd05584         124 RDLKPENILLDA--QGHVKLTDFGLCKESIHEGTV------THTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLT  195 (323)
T ss_pred             CCCCHHHeEECC--CCCEEEeeCcCCeecccCCCc------ccccCCCccccChhhccCCCCCCcceecccHHHHHHHhc
Confidence            999999999985  889999999998754322111      011235667888888766666778899999987766653

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.49  E-value=2.7e-13  Score=150.00  Aligned_cols=139  Identities=16%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             ccccccccccEEEEEEE---CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l---~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ...||.|+||+||+|++   +|+.||||+..+.....                             .  .+.....+.+|
T Consensus        23 ~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~-----------------------------~--~~~~~~~~~~E   71 (365)
T PRK09188         23 TAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWW-----------------------------S--KPLARHLAARE   71 (365)
T ss_pred             ccEEeecCcEEEEEEEEcCCCCeEEEEEEeccccccc-----------------------------c--cHHHHHHHHHH
Confidence            36799999999999987   47888999865421100                             0  01122346678


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      ++.+.++.     ++++ +|.++.  ....+|||||++|.+|....   ..  ....+...++ ..+.++|..|++|+|+
T Consensus        72 ~~iL~~L~-----h~~i-v~~l~~--~~~~~LVmE~~~G~~L~~~~---~~--~~~~~~~~i~-~aL~~lH~~gIiHrDL  137 (365)
T PRK09188         72 IRALKTVR-----GIGV-VPQLLA--TGKDGLVRGWTEGVPLHLAR---PH--GDPAWFRSAH-RALRDLHRAGITHNDL  137 (365)
T ss_pred             HHHHHhcc-----CCCC-CcEEEE--cCCcEEEEEccCCCCHHHhC---cc--chHHHHHHHH-HHHHHHHHCCCeeCCC
Confidence            88888773     2222 456664  25679999999999986321   11  1123333333 5578899999999999


Q ss_pred             -CCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          455 -HPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       455 -HPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                       ||+|||++.  +++++|+|||++..+.+.
T Consensus       138 ~KP~NILv~~--~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188        138 AKPQNWLMGP--DGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             CCcceEEEcC--CCCEEEEECccceecccC
Confidence             899999974  789999999999988654

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.49  E-value=6.2e-13  Score=135.21  Aligned_cols=183  Identities=18%  Similarity=0.184  Sum_probs=125.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|+|++|+||++..  +|+.|++|+.++...+                                    ....+.+|..
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~------------------------------------~~~~~~~e~~   49 (253)
T cd05122           6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKE------------------------------------KKEKIINEIQ   49 (253)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEecccchh------------------------------------HHHHHHHHHH
Confidence            6899999999999999  4899999998764220                                    1112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+.++.     ++++.-+.-........+++|||++|.+|.++.......++...+...+..  ..+..+|..|++|+|+
T Consensus        50 ~l~~l~-----~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl  124 (253)
T cd05122          50 ILKKCK-----HPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDI  124 (253)
T ss_pred             HHHhCC-----CCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCC
Confidence            444432     222222221223346779999999999999876543234455554443322  3478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||.+..+.+...       .....++..++.++....+..+...|++++...+.+++.
T Consensus       125 ~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~  192 (253)
T cd05122         125 KAANILLTS--DGEVKLIDFGLSAQLSDTKA-------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAE  192 (253)
T ss_pred             CHHHEEEcc--CCeEEEeecccccccccccc-------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHh
Confidence            999999986  78999999999988876542       011234556677777777767778999999877766553

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.49  E-value=3.9e-13  Score=141.82  Aligned_cols=187  Identities=19%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             cccccccccEEEEEEE---CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|.||+|+.   .|+.||||+.+......                                  .......+|.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~e~   52 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE----------------------------------GMPLSTIREV   52 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC----------------------------------CchHHHHHHH
Confidence            5799999999999987   37899999876532110                                  0000112233


Q ss_pred             HHHHHHHHhcCCCCceeeceeee----ccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~----e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      ..+..+.. +.+..-+.+..++.    +..+..+++|||++| .+.++... ...+.+...+...+  +-..+..+|..|
T Consensus        53 ~~l~~l~~-~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~  130 (290)
T cd07862          53 AVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR  130 (290)
T ss_pred             HHHHhhcc-cCCCCcceEEEEEecccCCCCCcEEEEEccCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333321 22222233333321    123457999999986 66665432 22234433333222  223478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.||+++.  ++.++|+|||++..++....       .....+...+++++....+......|++++...+.+
T Consensus       131 iiH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~e  201 (290)
T cd07862         131 VVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE  201 (290)
T ss_pred             eeeCCCCHHHEEEcC--CCCEEEccccceEeccCCcc-------cccccccccccChHHHhCCCCCCccchHHHHHHHHH
Confidence            999999999999985  78999999999987654311       111234566778888776667778899999987776


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       202 l~  203 (290)
T cd07862         202 MF  203 (290)
T ss_pred             HH
Confidence            65

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-13  Score=152.34  Aligned_cols=200  Identities=16%  Similarity=0.150  Sum_probs=135.9

Q ss_pred             CCCCCHHHHHHHHHHHhCCChhhhhcccCc-cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHH
Q 004334          269 VPPFPSETAVSIVEEELGAPLDDVFERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL  346 (760)
Q Consensus       269 vpp~p~~~v~~iie~elG~~~~~iF~~fd~-~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l  346 (760)
                      ..-++++++++.-            ..|++ +-||.|+||.||+|.+ +|+.||||...++....               
T Consensus        62 ~~~fs~~el~~AT------------~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~---------------  114 (361)
T KOG1187|consen   62 LRSFSYDELRKAT------------NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG---------------  114 (361)
T ss_pred             cceeeHHHHHHHH------------hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc---------------
Confidence            3345666655543            35754 7899999999999999 67999999766542211               


Q ss_pred             hhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCC-CeEEEEeecCCCchhhhhhhhhc
Q 004334          347 QKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDEL  425 (760)
Q Consensus       347 ~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st-~~vLVME~ieG~~L~d~~~l~~~  425 (760)
                                           ...+.+|...+.+++    |.+-|.+-... .... .++||.||++.++|.+.......
T Consensus       115 ---------------------~~eF~~Ei~~ls~l~----H~Nlv~LlGyC-~e~~~~~~LVYEym~nGsL~d~L~~~~~  168 (361)
T KOG1187|consen  115 ---------------------EREFLNEVEILSRLR----HPNLVKLLGYC-LEGGEHRLLVYEYMPNGSLEDHLHGKKG  168 (361)
T ss_pred             ---------------------hhHHHHHHHHHhcCC----CcCcccEEEEE-ecCCceEEEEEEccCCCCHHHHhCCCCC
Confidence                                 011344555555542    22223332211 1123 48999999999999987654332


Q ss_pred             -CCC---HHHHHHHHHHHHHHHHHhCC---ccccCCCCCcEEEeccCCCcEEEEeecceeccCh-hhHHHHHHHHHHHh-
Q 004334          426 -GVD---RKRLGRYAVESYLEQILSHG---FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP-NIREGLLEAFYGIY-  496 (760)
Q Consensus       426 -g~d---~~~la~~lv~~~L~qI~~~G---ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~-~~r~~l~~l~~al~-  496 (760)
                       .++   |-.||...++. +..+|...   ++|+|+||.|||++.  +...++.|||++...+. ....       ... 
T Consensus       169 ~~L~W~~R~kIa~g~A~g-L~yLH~~~~~~iiHrDiKssNILLD~--~~~aKlsDFGLa~~~~~~~~~~-------~~~~  238 (361)
T KOG1187|consen  169 EPLDWETRLKIALGAARG-LAYLHEGCPPPIIHRDIKSSNILLDE--DFNAKLSDFGLAKLGPEGDTSV-------STTV  238 (361)
T ss_pred             CCCCHHHHHHHHHHHHHH-HHHHccCCCCCEecCCCCHHHeeECC--CCCEEccCccCcccCCccccce-------eeec
Confidence             222   34454444444 88888754   999999999999985  88999999999966554 2211       011 


Q ss_pred             hcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          497 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       497 ~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .++..++++++...|.++...|+++++..+.+++.
T Consensus       239 ~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElit  273 (361)
T KOG1187|consen  239 MGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELIT  273 (361)
T ss_pred             CCCCccCChhhhccCCcCcccccccchHHHHHHHh
Confidence            57888999999999999999999999987766543

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.48  E-value=1.2e-12  Score=140.87  Aligned_cols=199  Identities=19%  Similarity=0.197  Sum_probs=129.1

Q ss_pred             HHHHHhCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccc
Q 004334          280 IVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (760)
Q Consensus       280 iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~  357 (760)
                      +...-++.+++..|..  .+.+|.|++|+||+|+.  +|+.||||+....-...                          
T Consensus        14 ~~~~~~~~~~~~~f~~--~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~--------------------------   65 (317)
T cd06635          14 IAELFFKEDPEKLFTD--LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS--------------------------   65 (317)
T ss_pred             HHHHhcCCCchhhhhh--hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCc--------------------------
Confidence            4555677788887764  35799999999999998  58999999865421100                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH-
Q 004334          358 RDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  436 (760)
Q Consensus       358 ~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l-  436 (760)
                             .+....+.+|++.+.++    .+...+.+...+ ......++||||++| ++.+........++...+...+ 
T Consensus        66 -------~~~~~~~~~e~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~g-~l~~~~~~~~~~l~~~~~~~i~~  132 (317)
T cd06635          66 -------NEKWQDIIKEVKFLQRI----KHPNSIEYKGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITH  132 (317)
T ss_pred             -------hHHHHHHHHHHHHHHhC----CCCCEEEEEEEE-eeCCeEEEEEeCCCC-CHHHHHHHhcCCCCHHHHHHHHH
Confidence                   11112344555555544    222223333322 234567999999987 5666543333334444443332 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCC
Q 004334          437 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGV  512 (760)
Q Consensus       437 -v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~  512 (760)
                       +...+..+|..|++|+|++|+||+++.  ++.++++|||++...+....          ..+...+++++...   .+.
T Consensus       133 ~i~~~l~~lH~~~i~H~dL~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~  200 (317)
T cd06635         133 GALQGLAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASIASPANS----------FVGTPYWMAPEVILAMDEGQ  200 (317)
T ss_pred             HHHHHHHHHHHCCcccCCCCcccEEECC--CCCEEEecCCCccccCCccc----------ccCCccccChhhhhcCCCCC
Confidence             223468889999999999999999975  78999999999876654321          12344566666652   345


Q ss_pred             CCCCCChHHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l~  531 (760)
                      .++..|++++...+.+++.
T Consensus       201 ~~~~~Dv~slGvil~el~~  219 (317)
T cd06635         201 YDGKVDVWSLGITCIELAE  219 (317)
T ss_pred             CCccccHHHHHHHHHHHHh
Confidence            6778899999887766653

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.48  E-value=3.1e-13  Score=141.82  Aligned_cols=187  Identities=17%  Similarity=0.183  Sum_probs=121.1

Q ss_pred             hhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          290 DDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       290 ~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      .+.|...  +.||+|.+|.||+|.+  +|+.||||+......+.                                   .
T Consensus         3 ~~~y~~~--~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~   45 (277)
T cd06642           3 EELFTKL--ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAED-----------------------------------E   45 (277)
T ss_pred             HHHHHHH--HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchH-----------------------------------H
Confidence            3444433  4699999999999998  58999999865421110                                   1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~q  443 (760)
                      ...+.+|+..+.++     ++++  +++.+.  ......++||||++|+++.++...  .......+...+  +-..+..
T Consensus        46 ~~~~~~e~~~l~~l-----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~i~~~l~~  116 (277)
T cd06642          46 IEDIQQEITVLSQC-----DSPY--ITRYYGSYLKGTKLWIIMEYLGGGSALDLLKP--GPLEETYIATILREILKGLDY  116 (277)
T ss_pred             HHHHHHHHHHHHcC-----CCCc--cHhhhcccccCCceEEEEEccCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            12234455544443     1222  222222  234557999999999999886532  223333322222  2234677


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|..|++|+|+||+||++++  ++.+++.|||++..+.......      ....++..+++++....+..+...|++++.
T Consensus       117 lH~~~ivH~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  188 (277)
T cd06642         117 LHSERKIHRDIKAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDFKADIWSLG  188 (277)
T ss_pred             HhcCCeeccCCChheEEEeC--CCCEEEccccccccccCcchhh------hcccCcccccCHHHhCcCCCchhhhHHHHH
Confidence            89999999999999999985  7899999999998876543211      112345566777777666667778999998


Q ss_pred             HHHHHHH
Q 004334          524 RTAQFFL  530 (760)
Q Consensus       524 ~~~~~~l  530 (760)
                      ..+.+++
T Consensus       189 ~il~el~  195 (277)
T cd06642         189 ITAIELA  195 (277)
T ss_pred             HHHHHHH
Confidence            7766554

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.48  E-value=2.1e-13  Score=143.57  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  +....+.+|..
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~~~~E~~   52 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENE----------------------------------EVKETTLRELK   52 (287)
T ss_pred             EEecccCCEEEEEEEECCCCcEEEEEEEecccccc----------------------------------cchhhHHHHHH
Confidence            5799999999999999  58999999876421100                                  01112234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+..++ +.....++||||++|..+..+... ..+.+...+...+  +-..+..+|..|++|+|+
T Consensus        53 ~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl  126 (287)
T cd07848          53 MLRTLK----QENIVELKEAF-RRRGKLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDI  126 (287)
T ss_pred             HHHhCC----CccccchhhhE-ecCCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            444431    22222222222 234567999999999877655322 2234443333222  223477899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++..+.........     ...++..+++++....+..+...|+++++..+.+++.
T Consensus       127 kp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~  196 (287)
T cd07848         127 KPENLLISH--NDVLKLCDFGFARNLSEGSNANYT-----EYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSD  196 (287)
T ss_pred             CHHHEEEcC--CCcEEEeeccCccccccccccccc-----ccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHh
Confidence            999999985  789999999999887543221111     1124556777877766666778899999987766653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.48  E-value=5.8e-13  Score=140.47  Aligned_cols=183  Identities=15%  Similarity=0.144  Sum_probs=119.3

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|+||+++.  +|+.||+|+........                                 ..-......|...+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~~~~~~E~~il   47 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK---------------------------------KSGEKMALLEKEIL   47 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc---------------------------------chhhHHHHHHHHHH
Confidence            68999999999998  59999999864310000                                 00001122344444


Q ss_pred             HHHHHhcCCCCcee-eceeeeccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          379 ELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~-VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      .++     +++++. +...+ +.....+++|||++|++|.+.... ...+.+...+...  .+-..+..+|..|++|+|+
T Consensus        48 ~~l-----~hp~i~~~~~~~-~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~di  121 (277)
T cd05607          48 EKV-----NSPFIVNLAYAF-ESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDM  121 (277)
T ss_pred             Hhc-----CCCcEEEEEEEE-ecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccC
Confidence            443     233332 22222 334567999999999999875432 2223444433322  2334478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||++..+......       ....+...+++++....+..+...|++++.-.+.+++.
T Consensus       122 kp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~  189 (277)
T cd05607         122 KPENVLLDD--QGNCRLSDLGLAVELKDGKTI-------TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVA  189 (277)
T ss_pred             ChHhEEEcC--CCCEEEeeceeeeecCCCcee-------eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHh
Confidence            999999986  789999999998877543211       01234566778888777777788999999887766653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.48  E-value=1.8e-13  Score=155.83  Aligned_cols=185  Identities=16%  Similarity=0.172  Sum_probs=119.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||||-+|..  +|+.|||||.+-.-                                     .+.+.-..|.+
T Consensus       192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-------------------------------------~f~~Q~~~Ei~  234 (586)
T KOG0667|consen  192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-------------------------------------RFLRQAQIEIR  234 (586)
T ss_pred             EEecccccceeEEEEecCCCcEEEEEeeccCh-------------------------------------HHHHHHHHHHH
Confidence            6899999999999999  59999999987631                                     11122234566


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHH--HHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRY--AVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~--lv~~~L~qI~~~GffH  451 (760)
                      .++++.+.-. .....+-+.|.  .+....+||.|.. +..|.+++... ..|+....+...  -+-..|..+++.|++|
T Consensus       235 iL~~ln~~d~-~~~~n~Vrm~d~F~fr~HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIH  312 (586)
T KOG0667|consen  235 ILELLNKHDP-DDKYNIVRMLDYFYFRNHLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIH  312 (586)
T ss_pred             HHHHHhccCC-CCCeeEEEeeeccccccceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeee
Confidence            6666654221 22233334433  4557789999988 46777766433 334444433222  2223467788999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |||||+|||+.+.....|++||||.+...++..- .|+   ..    -+...-+.++.+ -.....|+|+|+=++.++..
T Consensus       313 cDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-tYi---QS----RfYRAPEVILGl-pY~~~IDmWSLGCIlAEL~t  383 (586)
T KOG0667|consen  313 CDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-TYI---QS----RFYRAPEVILGL-PYDTAIDMWSLGCILAELFT  383 (586)
T ss_pred             ccCChhheeeccCCcCceeEEecccccccCCcce-eee---ec----cccccchhhccC-CCCCccceeehhhhHHhHhc
Confidence            9999999999865556899999999998877543 111   11    122233334333 34667899999877666543

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.47  E-value=7e-13  Score=140.41  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=122.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.....                                 ......+.+|..
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~E~~   52 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK---------------------------------RKGESMALNEKQ   52 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh---------------------------------hhHHHHHHHHHH
Confidence            5799999999999999  58999999876531100                                 011122345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +...+.+...+ ......+++|||++|+.+.+..... ..+++...+.....  -..+..+|..|++|+|
T Consensus        53 il~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~d  127 (285)
T cd05632          53 ILEKVN----SQFVVNLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRD  127 (285)
T ss_pred             HHHHcC----CcCceeEEEEE-ecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecC
Confidence            666552    22223333333 2345679999999999998765322 22344444333322  2336889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||++++  ++.++++|||++..++.....       ....+...+++++...-+..+...|++++.-.+.+++.
T Consensus       128 ikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~  196 (285)
T cd05632         128 LKPENILLDD--YGHIRISDLGLAVKIPEGESI-------RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIE  196 (285)
T ss_pred             CCHHHEEECC--CCCEEEecCCcceecCCCCcc-------cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHh
Confidence            9999999985  789999999998776543211       01134566777887766666778899999877666543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.47  E-value=2.1e-13  Score=149.12  Aligned_cols=194  Identities=18%  Similarity=0.196  Sum_probs=120.8

Q ss_pred             CCChhhhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          286 GAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       286 G~~~~~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      |...-.++..|. .+.||.|++|.||+|..  .|+.||||+........                               
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-------------------------------   57 (355)
T cd07874           9 GDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ-------------------------------   57 (355)
T ss_pred             CchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccCh-------------------------------
Confidence            333334555564 37899999999999998  58999999865422111                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GR  434 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~  434 (760)
                         .....+.+|...+..+    .+..-+.+..++..     .....+++|||++|.. .+...   ...+...+   +.
T Consensus        58 ---~~~~~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l-~~~~~---~~l~~~~~~~~~~  126 (355)
T cd07874          58 ---THAKRAYRELVLMKCV----NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQVIQ---MELDHERMSYLLY  126 (355)
T ss_pred             ---HHHHHHHHHHHHHHHh----CCCchhceeeeeeccccccccceeEEEhhhhcccH-HHHHh---hcCCHHHHHHHHH
Confidence               0011123344444433    22222333333321     1134689999998853 33221   12333332   22


Q ss_pred             HHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          435 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       435 ~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                      .++ ..+..+|..|++|+|+||+||+++.  ++.++|+|||++.........       .-..++..++++++.......
T Consensus       127 qi~-~aL~~LH~~givHrDikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~  196 (355)
T cd07874         127 QML-CGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYK  196 (355)
T ss_pred             HHH-HHHHHHHhCCcccCCCChHHEEECC--CCCEEEeeCcccccCCCcccc-------CCccccCCccCHHHHcCCCCC
Confidence            222 3478899999999999999999985  889999999999876543211       111345567778877655567


Q ss_pred             CCCChHHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l~  531 (760)
                      +..|+++++-.+.+++.
T Consensus       197 ~~~DiwslG~il~el~~  213 (355)
T cd07874         197 ENVDIWSVGCIMGEMVR  213 (355)
T ss_pred             chhhHHHHHHHHHHHHh
Confidence            78899999987776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.47  E-value=3.2e-13  Score=145.88  Aligned_cols=184  Identities=17%  Similarity=0.152  Sum_probs=117.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 +........|...
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~~   48 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM---------------------------------DDDVECTMVEKRV   48 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------cchHHHHHHHHHH
Confidence            589999999999998  48899999987632100                                 0000111223222


Q ss_pred             HHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaD  453 (760)
                      +..   .+ +++++ .+...+ ......+++|||++|++|.+..... ...+...   ++..++ ..+..+|..|++|+|
T Consensus        49 l~~---~~-~hp~iv~~~~~~-~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~-~al~~LH~~~ivHrd  121 (316)
T cd05619          49 LSL---AW-EHPFLTHLYCTF-QTKENLFFVMEYLNGGDLMFHIQSC-HKFDLPRATFYAAEII-CGLQFLHSKGIVYRD  121 (316)
T ss_pred             HHh---cc-CCCcCcceEEEE-EeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHH-HHHHHHHhCCeEeCC
Confidence            221   11 23332 222222 2345578999999999998765321 1233222   222223 347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..........      .-..++..++++++......+...|+++++-.+.+++.
T Consensus       122 ikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~  191 (316)
T cd05619         122 LKLDNILLDT--DGHIKIADFGMCKENMLGDAKT------CTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLI  191 (316)
T ss_pred             CCHHHEEECC--CCCEEEccCCcceECCCCCCce------eeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHh
Confidence            9999999985  7899999999987532211100      11235667888888876667788999999988776653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=7.2e-13  Score=140.35  Aligned_cols=186  Identities=16%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.||||+........                                 .+....+.+|+.
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~E~~   52 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------RKGEAMALNEKQ   52 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh---------------------------------hhhHHHHHHHHH
Confidence            5699999999999998  58999999875521100                                 001112334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||++|++|.+..... ...++...+.....  -..+..+|..|++|+|
T Consensus        53 ~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~d  127 (285)
T cd05605          53 ILEKVN----SRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRD  127 (285)
T ss_pred             HHHhcC----CCCEeeeeeee-cCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecC
Confidence            555542    22222232222 2334679999999999998765322 12344443333222  2336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++++|||++..+.......       ...+...++++++..-+..+...|++++.-.+.+++.
T Consensus       128 lkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~  196 (285)
T cd05605         128 LKPENILLDD--YGHIRISDLGLAVEIPEGETIR-------GRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIE  196 (285)
T ss_pred             CCHHHEEECC--CCCEEEeeCCCceecCCCCccc-------cccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHH
Confidence            9999999985  7899999999988765432110       1124556677777766666777899999877766553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.47  E-value=2.5e-13  Score=152.41  Aligned_cols=191  Identities=17%  Similarity=0.184  Sum_probs=134.2

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++...|..|  +.||.|+-|-||.|+.  +++.||||...-  ..+-..+                          -++.
T Consensus       270 dP~~~y~~~--~kigqgaSG~vy~A~~~~~~~~VaiK~m~l--~~Q~~ke--------------------------Liln  319 (550)
T KOG0578|consen  270 DPRSKYTDF--KKIGQGATGGVYVARKISTKQEVAIKRMDL--RKQPKKE--------------------------LLLN  319 (550)
T ss_pred             Chhhhhcch--hhhccccccceeeeeeccCCceEEEEEEEe--ccCCchh--------------------------hhHH
Confidence            445555555  4699999999999998  688999996421  1111111                          1223


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  443 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~q  443 (760)
                      |+.-....+..|+..|-+-+            + +.++.+.||||++|++|+|+.....  .+..++|...-  -..|+.
T Consensus       320 Ei~Vm~~~~H~NiVnfl~Sy------------l-v~deLWVVMEym~ggsLTDvVt~~~--~~E~qIA~Icre~l~aL~f  384 (550)
T KOG0578|consen  320 EILVMRDLHHPNIVNFLDSY------------L-VGDELWVVMEYMEGGSLTDVVTKTR--MTEGQIAAICREILQGLKF  384 (550)
T ss_pred             HHHHHHhccchHHHHHHHHh------------c-ccceeEEEEeecCCCchhhhhhccc--ccHHHHHHHHHHHHHHHHH
Confidence            32211112234444443322            1 2367899999999999999865433  45556655433  334888


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|..|++|+|+|..|||+..  +|.++|.|||++.+++++...      .+-+-++++.|+++........+.+|+|+|+
T Consensus       385 LH~~gIiHrDIKSDnILL~~--~g~vKltDFGFcaqi~~~~~K------R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLG  456 (550)
T KOG0578|consen  385 LHARGIIHRDIKSDNILLTM--DGSVKLTDFGFCAQISEEQSK------RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLG  456 (550)
T ss_pred             HHhcceeeeccccceeEecc--CCcEEEeeeeeeeccccccCc------cccccCCCCccchhhhhhcccCccccchhhh
Confidence            99999999999999999986  899999999999999987631      2345689999999999987778899999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      -.+-+|++
T Consensus       457 IMaIEMve  464 (550)
T KOG0578|consen  457 IMAIEMVE  464 (550)
T ss_pred             hHHHHHhc
Confidence            87766654

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=2e-13  Score=162.13  Aligned_cols=118  Identities=20%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             eEEEEeecCCCchhhhhhhhhcCCCHHHHHH---HHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          404 QILTMEYVPGIKINRIQSLDELGVDRKRLGR---YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~~~g~d~~~la~---~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      .||||||++|+.|-.+..-  .+.-+...|+   .-+-..+..||..|++|||+||.|||++.  .|.|+|.|||.+-.+
T Consensus       150 LYlVMdY~pGGDlltLlSk--~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~--~GHikLADFGsClkm  225 (1317)
T KOG0612|consen  150 LYLVMDYMPGGDLLTLLSK--FDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDK--SGHIKLADFGSCLKM  225 (1317)
T ss_pred             eEEEEecccCchHHHHHhh--cCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecc--cCcEeeccchhHHhc
Confidence            5899999999998876532  2211222222   22334578899999999999999999986  899999999999988


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHHHHHHHHH
Q 004334          481 SPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       481 ~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~~~~~~~l  530 (760)
                      +.+-.     .-..+.-|+|+|+.+++++.     |...+..|-|+++..+++|+
T Consensus       226 ~~dG~-----V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMl  275 (1317)
T KOG0612|consen  226 DADGT-----VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEML  275 (1317)
T ss_pred             CCCCc-----EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHH
Confidence            75422     11234468999999988763     56778899999998888776

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.46  E-value=8.6e-13  Score=136.67  Aligned_cols=179  Identities=15%  Similarity=0.155  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.+|.|++|.||+|..+|+.|++|..+.+..                                      ...+.+|+..+
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~--------------------------------------~~~~~~e~~~l   53 (256)
T cd05082          12 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------AQAFLAEASVM   53 (256)
T ss_pred             eeecccCCCeEEEEEEcCCcEEEEEeCCCch--------------------------------------HHHHHHHHHHH
Confidence            5799999999999999999999998643210                                      11234455555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++    .+...+.+...+.+.....+++|||++|++|.++...... ..+...+....  +-..+..+|..|++|+|++
T Consensus        54 ~~l----~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  129 (256)
T cd05082          54 TQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLA  129 (256)
T ss_pred             HhC----CCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccc
Confidence            544    2222333333333344567999999999999987543222 13333333222  2244788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||++++  ++.++|+|||++.........         ......+++++....+..+...|++++.-.+.+++
T Consensus       130 p~nil~~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~  193 (256)
T cd05082         130 ARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  193 (256)
T ss_pred             hheEEEcC--CCcEEecCCccceeccccCCC---------CccceeecCHHHHccCCCCchhhhHHHHHHHHHHH
Confidence            99999986  889999999998765432211         12234567777777777777889999987766554

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.46  E-value=4.6e-13  Score=142.03  Aligned_cols=182  Identities=13%  Similarity=0.072  Sum_probs=113.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+.+......                                   ....+.+|.+
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~E~~   55 (288)
T cd07871          11 DKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG-----------------------------------APCTAIREVS   55 (288)
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEecccccCC-----------------------------------cchhHHHHHH
Confidence            6799999999999998  58999999875421100                                   0011234555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      .+.++    . +++  |.+++.  ......++||||++| ++.+.............+...  .+-..+..+|..|++|+
T Consensus        56 ~l~~l----~-h~n--iv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~  127 (288)
T cd07871          56 LLKNL----K-HAN--IVTLHDIIHTERCLTLVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHR  127 (288)
T ss_pred             HHHhC----C-CCC--EeeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            55444    2 233  233332  233456899999998 676654322222233322222  22334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||.||+++.  ++.++|+|||++..........      .-..+...++++++..- ...+...|+++++..+.+++.
T Consensus       128 dlkp~Nil~~~--~~~~kl~DfG~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~  199 (288)
T cd07871         128 DLKPQNLLINE--KGELKLADFGLARAKSVPTKTY------SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMAT  199 (288)
T ss_pred             CCCHHHEEECC--CCCEEECcCcceeeccCCCccc------cCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHh
Confidence            99999999985  7899999999987654322110      00123455667776543 234566899999887766543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.46  E-value=8.4e-13  Score=135.46  Aligned_cols=187  Identities=17%  Similarity=0.173  Sum_probs=124.8

Q ss_pred             cccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|...     +..|+||+.++.....                                   -...+.+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~   45 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-----------------------------------ERKDFLK   45 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-----------------------------------HHHHHHH
Confidence            36899999999999993     7899999987642211                                   0112344


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh--------hcCCCHHHHHHHHHH--HHHHH
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--------ELGVDRKRLGRYAVE--SYLEQ  443 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~--------~~g~d~~~la~~lv~--~~L~q  443 (760)
                      |.+.+..+.    +..-+.+..++ ......+++|||++|.+|.++....        ....+...+...+.+  ..+..
T Consensus        46 e~~~l~~~~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~  120 (262)
T cd00192          46 EARVMKKLG----HPNVVRLLGVC-TEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY  120 (262)
T ss_pred             HHHHHhhcC----CCChheeeeee-cCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence            555555442    21112222222 2355679999999999999876543        233444444433332  33788


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|..|++|+|++|.||+++.  ++.++|+|||.+..+.......    ...-...+..+++++....+..+...|++++.
T Consensus       121 lH~~~i~H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  194 (262)
T cd00192         121 LASKKFVHRDLAARNCLVGE--DLVVKISDFGLSRDVYDDDYYR----KKTGGKLPIRWMAPESLKDGIFTSKSDVWSFG  194 (262)
T ss_pred             HHcCCcccCccCcceEEECC--CCcEEEcccccccccccccccc----cccCCCcCccccCHHHhccCCcchhhccHHHH
Confidence            99999999999999999986  7899999999998876543100    00112234567788877776677788999998


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      ..+.+++.
T Consensus       195 ~il~~l~~  202 (262)
T cd00192         195 VLLWEIFT  202 (262)
T ss_pred             HHHHHHHh
Confidence            87766653

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.46  E-value=3.9e-13  Score=145.10  Aligned_cols=184  Identities=20%  Similarity=0.166  Sum_probs=118.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -||.|++|.||+|+.  +|+.||||+.+......                                 .+....+..|...
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~i   48 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ---------------------------------DDDVECTMTEKRV   48 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------hhHHHHHHHHHHH
Confidence            489999999999999  58899999876421000                                 0000112234333


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +....    ++++  +++++.  +.....++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|
T Consensus        49 l~~~~----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~d  121 (318)
T cd05570          49 LALAG----KHPF--LTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS-GRFDEPRARFYAAEIVLGLQFLHERGIIYRD  121 (318)
T ss_pred             HHhcc----CCCC--ccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEccC
Confidence            33321    2332  333332  3345679999999999998754322 223433333222  22346789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++|+|||++..........      ....++..++++++...+..+...|+++++-.+.+++.
T Consensus       122 lkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~  191 (318)
T cd05570         122 LKLDNVLLDS--EGHIKIADFGMCKEGILGGVTT------STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLA  191 (318)
T ss_pred             CCHHHeEECC--CCcEEecccCCCeecCcCCCcc------cceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhh
Confidence            9999999986  7899999999886532211100      11235677888888877677788899999987766653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.46  E-value=3.5e-13  Score=138.80  Aligned_cols=185  Identities=19%  Similarity=0.271  Sum_probs=122.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||+|+....-...                                  .......+|+.
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~----------------------------------~~~~~~~~e~~   50 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE----------------------------------EEREENIREIK   50 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH----------------------------------HHHHHHHHHHH
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc----------------------------------cccchhhhhhh
Confidence            5799999999999999  58899999987632111                                  11111223666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .++++.    +..-+.+..++ ......+++|||++|.+|.++.. ....++...+...+.+  ..+..+|..|++|+|+
T Consensus        51 ~~~~l~----~~~i~~~~~~~-~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~di  124 (260)
T PF00069_consen   51 ILRRLR----HPNIVQILDVF-QDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSKGIVHRDI  124 (260)
T ss_dssp             HHHHHT----BTTBCHEEEEE-EESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSB
T ss_pred             cccccc----ccccccccccc-ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            666662    22222233333 33667799999999999988765 2333444444333322  3478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||.+..++.....      .....++..+.++++.. ........|++++...+.+++.
T Consensus       125 kp~NIl~~~--~~~~~l~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  194 (260)
T PF00069_consen  125 KPENILLDE--NGEVKLIDFGSSVKLSENNEN------FNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLT  194 (260)
T ss_dssp             SGGGEEEST--TSEEEESSGTTTEESTSTTSE------BSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc--ccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence            999999985  889999999998754211110      01123455667777776 5666777899999887766554

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.46  E-value=5.2e-13  Score=152.91  Aligned_cols=185  Identities=16%  Similarity=0.107  Sum_probs=123.4

Q ss_pred             ccccccccccEEEEEEE--C-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .+.+|.|++|.||+|..  + ++.||+|.....-..                                    -...+..|
T Consensus        72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~------------------------------------~~~~~~~E  115 (478)
T PTZ00267         72 TTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDER------------------------------------QAAYARSE  115 (478)
T ss_pred             EEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHH------------------------------------HHHHHHHH
Confidence            35799999999999987  4 788999964321100                                    01123345


Q ss_pred             HHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhh--h-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l--~-~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      +..+..+     ++++  |++++.  ......+|||||++|++|.+....  . ...++...+...+  +...+..+|..
T Consensus       116 ~~~l~~l-----~Hpn--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~  188 (478)
T PTZ00267        116 LHCLAAC-----DHFG--IVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR  188 (478)
T ss_pred             HHHHHhC-----CCCC--EeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            5555443     2333  333332  334668999999999999875431  1 1223333332222  33457889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      |++|+|+||.|||++.  ++.++|+|||++..+........    .....+++.+++++....+..+...|++++.-.+.
T Consensus       189 ~ivHrDlkp~NIll~~--~~~~kL~DFgla~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~  262 (478)
T PTZ00267        189 KMMHRDLKSANIFLMP--TGIIKLGDFGFSKQYSDSVSLDV----ASSFCGTPYYLAPELWERKRYSKKADMWSLGVILY  262 (478)
T ss_pred             CEEECCcCHHhEEECC--CCcEEEEeCcCceecCCcccccc----ccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHH
Confidence            9999999999999985  88999999999988765432111    11123677788998887777777889999998777


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       263 el~t  266 (478)
T PTZ00267        263 ELLT  266 (478)
T ss_pred             HHHh
Confidence            6653

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.46  E-value=1e-12  Score=137.15  Aligned_cols=200  Identities=17%  Similarity=0.104  Sum_probs=122.8

Q ss_pred             hcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          293 FERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       293 F~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      |.++..+++|.|++|+||+|..  +|+.||||..+........                          ......+..+.
T Consensus         1 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~--------------------------~~~~~~~~~~~   54 (272)
T cd06629           1 FKWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGR--------------------------HDSRQKDMVKA   54 (272)
T ss_pred             CceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcc--------------------------cchHHHHHHHH
Confidence            4566678999999999999987  6899999976542111100                          00001112234


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~  447 (760)
                      +..|+..+..+.    +..-+.+.. +.......++||||++|++|.+..... ..++...+   +..++ ..+..+|..
T Consensus        55 ~~~e~~~l~~l~----h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~-~~l~~lH~~  127 (272)
T cd06629          55 LRSEIETLKDLD----HLNIVQYLG-FETTEEYLSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVL-EGLAYLHSK  127 (272)
T ss_pred             HHHHHHHHHhcC----CCCcceEEE-EeccCCceEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHH-HHHHHHhhC
Confidence            455665555542    222222222 223345679999999999998865322 22332222   22222 346789999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCChHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRRT  525 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~--~~~~~D~~al~~~  525 (760)
                      |++|+|++|+||+++.  ++.++++|||+...........    ......+...+++++......  .+...|++++...
T Consensus       128 ~i~H~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~  201 (272)
T cd06629         128 GILHRDLKADNLLVDA--DGICKISDFGISKKSDDIYDND----QNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCV  201 (272)
T ss_pred             CeeecCCChhhEEEcC--CCeEEEeecccccccccccccc----ccccccCCccccCHHHhccccCCCCccchhHHHHHH
Confidence            9999999999999985  8899999999987654321110    001122344556666655433  4667899999877


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       202 l~~l~~  207 (272)
T cd06629         202 VLEMFA  207 (272)
T ss_pred             HHHHHh
Confidence            766543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.46  E-value=9.7e-13  Score=145.81  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......    ..+.......+++++....+..+...|
T Consensus       225 ~~l~~lH~~~ivH~Dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sD  298 (375)
T cd05104         225 KGMSFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIRNDSNYV----VKGNARLPVKWMAPESIFNCVYTFESD  298 (375)
T ss_pred             HHHHHHHHCCeeccCCchhhEEEEC--CCcEEEecCccceeccCccccc----ccCCCCCCcceeChhHhcCCCCCCCCC
Confidence            3477899999999999999999985  7889999999998775432211    011111234577788877777788899


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++.-.+.+++
T Consensus       299 i~slG~~l~ell  310 (375)
T cd05104         299 VWSYGILLWEIF  310 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            999988776655

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.45  E-value=1.4e-13  Score=147.70  Aligned_cols=193  Identities=19%  Similarity=0.192  Sum_probs=119.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+|||.|++|.|+.|..  +|+.||||-...                  .++.                .-..+...+|.
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~------------------~F~~----------------~~~akRtlREl   72 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILN------------------PFEN----------------QIDAKRTLREL   72 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhhhh------------------hhhc----------------hHHHHHHHHHH
Confidence            47999999999999999  699999994221                  1100                01122345677


Q ss_pred             HHHHHHHH-hcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004334          376 ANAELFAS-NFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~-~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      +-+++|++ |.-....|..|... +--...++|+|++ +..|.++....+ ...+..+..-..+-..++.+|..|++|+|
T Consensus        73 klLr~~~HeNIi~l~di~~p~~~-~~f~DvYiV~elM-etDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRD  150 (359)
T KOG0660|consen   73 KLLRHLRHENIIGLLDIFRPPSR-DKFNDVYLVFELM-ETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRD  150 (359)
T ss_pred             HHHHHhcCCCcceEEeecccccc-cccceeEEehhHH-hhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccc
Confidence            77777742 22222233344222 1224579999999 456666554332 21122222222222336778999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNS  532 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l-~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~  532 (760)
                      +||+|++++.  +..++++|||+++.+++.....+ .+.+   .. -+....+.++.+.-.+...|+++++=++.+|+..
T Consensus       151 LKPsNll~n~--~c~lKI~DFGLAR~~~~~~~~~~mTeYV---aT-RWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~g  224 (359)
T KOG0660|consen  151 LKPSNLLLNA--DCDLKICDFGLARYLDKFFEDGFMTEYV---AT-RWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTG  224 (359)
T ss_pred             cchhheeecc--CCCEEeccccceeeccccCcccchhcce---ee-eeecCHHHHhccccccchhhhhhhhHHHHHHHcC
Confidence            9999999986  78999999999999975322221 1111   11 2233344555666667889999999877777643

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.45  E-value=3.3e-13  Score=145.37  Aligned_cols=182  Identities=15%  Similarity=0.179  Sum_probs=118.5

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+++.     +|+.||||+.+.....                                  ..-...+.+
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~----------------------------------~~~~~~~~~   47 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK----------------------------------VRDRVRTKM   47 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh----------------------------------hhhHHHHHH
Confidence            4689999999999875     4799999987541100                                  000012234


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      |.+.+.++     ++++  |++++.  ......++||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        48 E~~~l~~l-----~h~n--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~i  119 (318)
T cd05582          48 ERDILAEV-----NHPF--IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHLHSLGI  119 (318)
T ss_pred             HHHHHHhC-----CCCC--cccEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            55555544     2222  223322  334567999999999999876532 1223333332222  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|.||+++.  ++.++|+|||++...........      ...+...+++++.......+...|++++...+.++
T Consensus       120 ~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el  191 (318)
T cd05582         120 IYRDLKPENILLDE--EGHIKLTDFGLSKESIDHEKKAY------SFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEM  191 (318)
T ss_pred             ecCCCCHHHeEECC--CCcEEEeeccCCcccCCCCCcee------cccCChhhcCHHHHcCCCCCCccceeccceEeeee
Confidence            99999999999985  78999999999876644321111      12356778888887765567788999988766555


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       192 ~  192 (318)
T cd05582         192 L  192 (318)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.45  E-value=5.9e-13  Score=160.71  Aligned_cols=193  Identities=19%  Similarity=0.134  Sum_probs=124.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 ......+.+|++
T Consensus         8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~---------------------------------e~~~~rflrEi~   54 (932)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSEN---------------------------------PLLKKRFLREAK   54 (932)
T ss_pred             EEEecCCCEEEEEEEECCCCcEEEEEEECcccccC---------------------------------HHHHHHHHHHHH
Confidence            6799999999999998  58999999876532211                                 011223445665


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh--h--------cCCCHHHHHHH--HHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--E--------LGVDRKRLGRY--AVESYLEQI  444 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~--~--------~g~d~~~la~~--lv~~~L~qI  444 (760)
                      .+.++    .+..-+.+..++ ......+++|||++|++|.++....  .        ...+...+...  .+...+..+
T Consensus        55 ILs~L----~HPNIVkl~~v~-~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yL  129 (932)
T PRK13184         55 IAADL----IHPGIVPVYSIC-SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYV  129 (932)
T ss_pred             HHHhC----CCcCcCeEEEEE-eeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHH
Confidence            55554    222223332222 2345679999999999998865321  0        01111122211  122347889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH-----------HHH-HHHHhhcCHHHHHHHHHHcCC
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-----------LEA-FYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l-----------~~l-~~al~~~D~~~v~~~l~~lG~  512 (760)
                      |..|++|+|+||+||+++.  +|.++++|||++..+........           ... ..+-..+++.+++++...-+.
T Consensus       130 Hs~GIIHRDLKPeNILLd~--dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~  207 (932)
T PRK13184        130 HSKGVLHRDLKPDNILLGL--FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVP  207 (932)
T ss_pred             HHCCccccCCchheEEEcC--CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCC
Confidence            9999999999999999985  78999999999987732111000           000 001123677888898887666


Q ss_pred             CCCCCChHHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l~  531 (760)
                      .+...|+++++-.+.+++.
T Consensus       208 ~S~kSDIWSLGVILyELLT  226 (932)
T PRK13184        208 ASESTDIYALGVILYQMLT  226 (932)
T ss_pred             CCcHhHHHHHHHHHHHHHH
Confidence            7778899999988877765

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.45  E-value=1.4e-12  Score=138.35  Aligned_cols=186  Identities=16%  Similarity=0.124  Sum_probs=121.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.||||...+.....                                 .+....+.+|..
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~~~~~~E~~   52 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------RKGESMALNEKQ   52 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc---------------------------------hHHHHHHHHHHH
Confidence            5699999999999998  58999999866531110                                 011122334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+...+.+...+ ......+++|||++|++|.+.... ...+++...+...+  +-..+..+|..|++|+|
T Consensus        53 il~~l----~~~~i~~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~d  127 (285)
T cd05630          53 ILEKV----NSRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRD  127 (285)
T ss_pred             HHHhC----CCCCeeeeeEEE-ecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCC
Confidence            55544    222222222222 233567999999999999886532 22234433333322  22336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++++|||++..........       -..+...++++++...+..+...|++++.-.+.+++.
T Consensus       128 ikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~  196 (285)
T cd05630         128 LKPENILLDD--HGHIRISDLGLAVHVPEGQTIK-------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA  196 (285)
T ss_pred             CCHHHEEECC--CCCEEEeeccceeecCCCcccc-------CCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHh
Confidence            9999999985  7899999999987665432110       0124566778888877777778899999877666543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.45  E-value=1.2e-12  Score=136.46  Aligned_cols=185  Identities=13%  Similarity=0.103  Sum_probs=120.6

Q ss_pred             ccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|++|.||+|++    ++..||||+..+....                                   .....+.+|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~-----------------------------------~~~~~~~~E~   46 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEK-----------------------------------SVRDEMMREA   46 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccCh-----------------------------------HHHHHHHHHH
Confidence            389999999999987    2567999987663211                                   1112344565


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+..++  .....++||||++|++|.++.......++...+...+.+  ..+..+|..|++|+|
T Consensus        47 ~~l~~l----~h~~ii~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~d  120 (257)
T cd05115          47 EIMHQL----DNPYIVRMIGVC--EAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRD  120 (257)
T ss_pred             HHHHhc----CCCCeEEEEEEE--cCCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence            555554    233334444333  234579999999999999876433334454444433322  336778999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||+||+++.  ++.++|+|||++..+.........   .........+++++....+..+...|++++.-.+.+++
T Consensus       121 lkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  192 (257)
T cd05115         121 LAARNVLLVN--QHYAKISDFGLSKALGADDSYYKA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAF  192 (257)
T ss_pred             cchheEEEcC--CCcEEeccCCccccccCCccceec---cCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHh
Confidence            9999999985  789999999998866543221100   00011124566777777666777889999987766544

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=3e-13  Score=146.38  Aligned_cols=184  Identities=15%  Similarity=0.128  Sum_probs=113.0

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|.||+|+.  +|+.||||+....   .+...                             .+.. ....|...+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~---~~~~~-----------------------------~~~~-~~~~e~~~l   47 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKK---EIVAK-----------------------------KEVA-HTIGERNIL   47 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHH---HHhhh-----------------------------hHHH-HHHHHHHHH
Confidence            68999999999998  5899999986421   00000                             0000 011122222


Q ss_pred             HHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          379 ELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.  .+.+++.  ++.++.  +..+..++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        48 ~~~--~~~~~p~--i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDl  122 (330)
T cd05586          48 VRT--LLDESPF--IVGLKFSFQTDSDLYLVTDYMSGGELFWHLQK-EGRFSEDRAKFYIAELVLALEHLHKYDIVYRDL  122 (330)
T ss_pred             HHh--ccCCCCc--CcceEEEEecCCeEEEEEcCCCCChHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccC
Confidence            211  1113333  333333  334567999999999999775432 2223433333222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++.........      .....++..+++++...-. ......|+++++-.+.+++
T Consensus       123 kp~Nili~~--~~~~kl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~ell  191 (330)
T cd05586         123 KPENILLDA--TGHIALCDFGLSKANLTDNKT------TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMC  191 (330)
T ss_pred             CHHHeEECC--CCCEEEecCCcCcCCCCCCCC------ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEec
Confidence            999999985  789999999998764322111      0112356778888876432 2466789999887665554

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.45  E-value=2.2e-12  Score=132.75  Aligned_cols=186  Identities=12%  Similarity=0.062  Sum_probs=122.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||+|+.  +|+.|++|........                                  ..-...+.+|..
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN----------------------------------RREREEAIDEAR   51 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC----------------------------------HHHHHHHHHHHH
Confidence            5799999999999998  6899999976431100                                  001112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+..-+.+.. +.......+++|||++|.+|.++.... ....+...+...+  +...+..+|..|++|+|
T Consensus        52 ~l~~l----~h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~d  126 (256)
T cd08529          52 VLAKL----DSSYIIRYYE-SFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRD  126 (256)
T ss_pred             HHHhc----CCCCeehhee-eeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCC
Confidence            44444    2221122222 222234579999999999999876432 2234444433332  22346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++|.|||++..+.......      ....+...++++++...+..++..|++++...+.+++.
T Consensus       127 l~~~nili~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  196 (256)
T cd08529         127 IKSLNLFLDA--YDNVKIGDLGVAKLLSDNTNFA------NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCT  196 (256)
T ss_pred             CCcceEEEeC--CCCEEEcccccceeccCccchh------hccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHh
Confidence            9999999986  7899999999998876542211      11234556778888877777888999999877766543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.45  E-value=1.1e-12  Score=142.81  Aligned_cols=182  Identities=16%  Similarity=0.181  Sum_probs=121.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|++  +|+.||+|+.+......                                   ....+.+|++
T Consensus        11 ~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~~~~~E~~   55 (333)
T cd06650          11 SELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPA-----------------------------------IRNQIIRELQ   55 (333)
T ss_pred             ccccCCCCEEEEEEEECCCCcEEEEEEeecccCHH-----------------------------------HHHHHHHHHH
Confidence            5799999999999999  58999999876642211                                   1122345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+..+.    +..-+.+...+. .....+|||||++|++|.++..... ..+...+....  +-..+..+|. ++++|+|
T Consensus        56 ~l~~l~----h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~d  129 (333)
T cd06650          56 VLHECN----SPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHKIMHRD  129 (333)
T ss_pred             HHHHCC----CCcccceeEEEE-ECCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhcCCEEecC
Confidence            665552    222233333332 3456899999999999998754221 22333222221  2233667786 5899999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++..+......        ...+...++++++......+...|++++.-.+.+++.
T Consensus       130 lkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~  197 (333)
T cd06650         130 VKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAI  197 (333)
T ss_pred             CChhhEEEcC--CCCEEEeeCCcchhhhhhccc--------cCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999985  789999999998766432211        1235667788888776666777899999887766653

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.45  E-value=4e-13  Score=147.54  Aligned_cols=189  Identities=17%  Similarity=0.210  Sum_probs=118.0

Q ss_pred             hhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       292 iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      +...|. .+.||+|++|.||+|..  .++.||||+........                                  +..
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~   67 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THA   67 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCc----------------------------------hhH
Confidence            334443 36899999999999998  58999999875422110                                  001


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L  441 (760)
                      ..+.+|...++.+    .+..-+.+..++..     .....++||||++|. +.+...   ...+...+...+  +-..+
T Consensus        68 ~~~~~E~~~l~~l----~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~---~~~~~~~~~~~~~qi~~aL  139 (364)
T cd07875          68 KRAYRELVLMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQVIQ---MELDHERMSYLLYQMLCGI  139 (364)
T ss_pred             HHHHHHHHHHHhc----CCCCccccceeecccccccccCeEEEEEeCCCCC-HHHHHH---hcCCHHHHHHHHHHHHHHH
Confidence            1223344444433    22222222222221     123469999999874 443322   123333322222  22347


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      ..+|..|++|+|+||.||+++.  ++.++|+|||++.........       .-..+...++++++......++..|+++
T Consensus       140 ~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~DiwS  210 (364)
T cd07875         140 KHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWS  210 (364)
T ss_pred             HHHhhCCeecCCCCHHHEEECC--CCcEEEEeCCCccccCCCCcc-------cCCcccCCcCCHHHHhCCCCCchhhHHh
Confidence            8899999999999999999985  889999999999876543210       1113456677888777666777899999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      ++-.+.+++.
T Consensus       211 lG~il~ell~  220 (364)
T cd07875         211 VGCIMGEMIK  220 (364)
T ss_pred             HHHHHHHHHh
Confidence            9988777653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=5.2e-13  Score=146.19  Aligned_cols=187  Identities=18%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-||.|--|+||+|+.  .++.||||+..-                                  ...-++ -+.+++|..
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inL----------------------------------Ekc~~~-ld~l~kE~~   76 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKIINL----------------------------------EKCNND-LDALRKEVQ   76 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEeeh----------------------------------hhhhhh-HHHHHHHHH
Confidence            4689998899999998  699999997422                                  111122 234677888


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhh-hhhcCCCHHHHHHHHHH--HHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVE--SYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~-l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaD  453 (760)
                      +|..|     ++|+|.--..-.-.....|+||-|+.|+++.++.. .-..|++...++..+-+  ..|.++|.+|.+|||
T Consensus        77 ~msl~-----~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRd  151 (516)
T KOG0582|consen   77 TMSLI-----DHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRD  151 (516)
T ss_pred             Hhhhc-----CCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecc
Confidence            88877     44544322222233467799999999999999764 33456777766665433  337889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-H-cCCCCCCCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-Q-MGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~-~-lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|||||+.  +|.++|.|||....+-+.-.+.-.++  ..+.+.+.+|+++++ + .--..-+.|+++|+-.+-++
T Consensus       152 vKAgnILi~~--dG~VkLadFgvsa~l~~~G~R~~~rf--~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~EL  225 (516)
T KOG0582|consen  152 VKAGNILIDS--DGTVKLADFGVSASLFDSGDRQVTRF--NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACEL  225 (516)
T ss_pred             cccccEEEcC--CCcEEEcCceeeeeecccCceeeEee--ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHH
Confidence            9999999986  99999999999887755432222222  344578888888873 2 22224567888887655444

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.44  E-value=1.3e-12  Score=137.36  Aligned_cols=182  Identities=17%  Similarity=0.149  Sum_probs=119.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||+|++|+||+|+.  +|+.||||+.......                                   .....+.+|..
T Consensus        10 ~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~e~~   54 (277)
T cd06640          10 ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAE-----------------------------------DEIEDIQQEIT   54 (277)
T ss_pred             hhcccCCCeEEEEEEEccCCEEEEEEEEeccccH-----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  5899999986431100                                   00112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+...+.+...+ ......++||||++|++|.++...  ...+...+.....+  ..+..+|..|++|+|+
T Consensus        55 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~--~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl  127 (277)
T cd06640          55 VLSQC----DSPYVTKYYGSY-LKGTKLWIIMEYLGGGSALDLLRA--GPFDEFQIATMLKEILKGLDYLHSEKKIHRDI  127 (277)
T ss_pred             HHHhC----CCCCEeeEEEEE-EECCEEEEEEecCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCcCC
Confidence            44443    222222333333 234568999999999999886542  23343333333222  3367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+++.  ++.++++|||++..+.......      ....++..+++++....+..+...|++++...+.+++
T Consensus       128 ~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~  195 (277)
T cd06640         128 KAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELA  195 (277)
T ss_pred             ChhhEEEcC--CCCEEEcccccceeccCCcccc------ccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHH
Confidence            999999985  7899999999998876543211      0112344566777766666677889999987776654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.7e-12  Score=133.04  Aligned_cols=184  Identities=16%  Similarity=0.129  Sum_probs=122.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||+|++|.||+|+.  +|+.|+||.....-..                                  +.....+.+|++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (254)
T cd06627           6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK----------------------------------EEALKSIMQEID   51 (254)
T ss_pred             eEEcccCCeEEEEEEEcCCCcEEEEEEecccccC----------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  5899999987653110                                  011123445555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.     ++++.-+.-+.......+++|||++|.+|.++.... ...+...+...+  +-..+..+|..|++|+|+
T Consensus        52 ~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  125 (254)
T cd06627          52 LLKNLK-----HPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDI  125 (254)
T ss_pred             HHHhCC-----CCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCC
Confidence            555542     222221111223345679999999999998865422 223333333322  223367899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+++.  ++.++|+|||++..+......      .....++..+++++...........|++++...+.+++
T Consensus       126 ~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~  193 (254)
T cd06627         126 KAANILTTK--DGVVKLADFGVATKLNDVSKD------DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELL  193 (254)
T ss_pred             CHHHEEECC--CCCEEEeccccceecCCCccc------ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHH
Confidence            999999985  789999999999988765432      11223566677777776665667789999887766554

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.44  E-value=6.9e-13  Score=137.35  Aligned_cols=186  Identities=17%  Similarity=0.209  Sum_probs=117.6

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+-+|.|.+|.||+|+.  +|+.||||-.+.+-.+                                  +.+..+..+|.
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~k----------------------------------dGi~~talREI   52 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAK----------------------------------DGINRTALREI   52 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccc----------------------------------cCccHHHHHHH
Confidence            35799999999999999  6999999987775211                                  11122334455


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~--~L~qI~~~GffHaD  453 (760)
                      +.++.+.    +..-+..-.+|+ +.+...||.||++- +|..+......-+.+..+-..+...  -+..+|.+.++|||
T Consensus        53 K~Lqel~----h~nIi~LiD~F~-~~~~l~lVfEfm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRD  126 (318)
T KOG0659|consen   53 KLLQELK----HPNIIELIDVFP-HKSNLSLVFEFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRD  126 (318)
T ss_pred             HHHHHcc----Ccchhhhhhhcc-CCCceEEEEEeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5555442    222233344443 34567899999984 4444444333334455544333322  26678999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.|+|+++  +|.+++.|||+++.+.+..+..--+    ++.+ ....-+.+...-.....+|+++++=++.+++
T Consensus       127 lKPnNLLis~--~g~lKiADFGLAr~f~~p~~~~~~~----V~TR-WYRAPELLfGsr~Yg~~VDmWavGCI~AELl  196 (318)
T KOG0659|consen  127 LKPNNLLISS--DGQLKIADFGLARFFGSPNRIQTHQ----VVTR-WYRAPELLFGSRQYGTGVDMWAVGCIFAELL  196 (318)
T ss_pred             CCccceEEcC--CCcEEeecccchhccCCCCcccccc----eeee-eccChHHhccchhcCCcchhhhHHHHHHHHH
Confidence            9999999986  9999999999999988766543322    1111 1222233333333456778998886665554

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.44  E-value=1.8e-12  Score=137.26  Aligned_cols=183  Identities=18%  Similarity=0.129  Sum_probs=121.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||+.++.-..                                 ..+....+.+|++
T Consensus         7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~~~~~e~~   53 (290)
T cd05580           7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIV---------------------------------KLKQVEHVLNEKR   53 (290)
T ss_pred             EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhh---------------------------------hhhHHHHHHHHHH
Confidence            5799999999999998  5899999987642000                                 0011123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+...+ ......+++|||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        54 ~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl  127 (290)
T cd05580          54 ILQSIR----HPFLVNLYGSF-QDDSNLYLVMEYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLHSLDIVYRDL  127 (290)
T ss_pred             HHHhCC----CCCccceeeEE-EcCCeEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCC
Confidence            665552    22223333333 2345679999999999998865332 223433333222  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++..+.....         ...+...+++++...-+......|++++...+.+++.
T Consensus       128 ~p~nili~~--~~~~kl~dfg~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  193 (290)
T cd05580         128 KPENLLLDS--DGYIKITDFGFAKRVKGRTY---------TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLA  193 (290)
T ss_pred             CHHHEEECC--CCCEEEeeCCCccccCCCCC---------CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHh
Confidence            999999986  78999999999988765411         1234556777777665556677899999877766553

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.44  E-value=1.7e-13  Score=145.42  Aligned_cols=186  Identities=16%  Similarity=0.129  Sum_probs=122.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-|+.|+||.||||+.  +++-||+|-.+++-++.                       +           |.-.-.+|..
T Consensus        82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~-----------------------G-----------FPItsLREIn  127 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKE-----------------------G-----------FPITSLREIN  127 (419)
T ss_pred             hhcccCcceeEEEeccCCcceeEEeeecccccccC-----------------------C-----------CcchhHHHHH
Confidence            5799999999999999  58999999887753211                       1           1111234555


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.+++    |.+-|.+-+|+..- -+..+||||||+- +|..+.......+...+   +...++ ..++.+|.+.++||
T Consensus       128 iLl~~~----H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL-~glk~lH~~wilHR  201 (419)
T KOG0663|consen  128 ILLKAR----HPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLL-RGLKHLHDNWILHR  201 (419)
T ss_pred             HHHhcC----CCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHH-HHHHHHhhceeEec
Confidence            555553    44556677766433 2567999999984 34443322222233332   222222 34788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||.|+|+++  .|.++++|||+++.+... ...+..++..+..+-++    .++..-..+...|++++.=++.+++.
T Consensus       202 DLK~SNLLm~~--~G~lKiaDFGLAR~ygsp-~k~~T~lVVTLWYRaPE----LLLG~~tyst~iDMWSvGCI~aE~l~  273 (419)
T KOG0663|consen  202 DLKTSNLLLSH--KGILKIADFGLAREYGSP-LKPYTPLVVTLWYRAPE----LLLGAKTYSTAVDMWSVGCIFAELLT  273 (419)
T ss_pred             ccchhheeecc--CCcEEecccchhhhhcCC-cccCcceEEEeeecCHH----HhcCCcccCcchhhhhHHHHHHHHHh
Confidence            99999999986  899999999999999775 23344444444444443    44444455677899999877666653

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.44  E-value=5.4e-13  Score=142.38  Aligned_cols=184  Identities=18%  Similarity=0.127  Sum_probs=114.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                   ......+|+.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~~~~~~~E~~   55 (303)
T cd07869          11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG-----------------------------------TPFTAIREAS   55 (303)
T ss_pred             eeEEecCCEEEEEEEECCCCCEEEEEEeccccccc-----------------------------------cchhHHHHHH
Confidence            6899999999999998  58999999875321100                                   0001234555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+..++ ......++||||++|. +.+.........+...+...+  +-..+..+|..|++|+|+
T Consensus        56 ~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dl  129 (303)
T cd07869          56 LLKGL----KHANIVLLHDII-HTKETLTLVFEYVHTD-LCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDL  129 (303)
T ss_pred             HHhhC----CCCCcCeEEEEE-ecCCeEEEEEECCCcC-HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            44444    222223333333 3345679999999864 444332222334444443332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||++++  ++.++|+|||++...+......      .-..++..++++++..- .......|+++++-.+.+++.
T Consensus       130 kp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  199 (303)
T cd07869         130 KPQNLLISD--TGELKLADFGLARAKSVPSHTY------SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQ  199 (303)
T ss_pred             CHHHEEECC--CCCEEECCCCcceeccCCCccC------CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999985  7899999999987654321100      00123455677776542 334556799999887766653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.44  E-value=5.7e-13  Score=153.49  Aligned_cols=189  Identities=15%  Similarity=0.097  Sum_probs=119.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-...  .+                                ...+.+|..
T Consensus        38 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~--~~--------------------------------~~~~~~Ei~   83 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSE--AD--------------------------------KNRAQAEVC   83 (496)
T ss_pred             EEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCH--HH--------------------------------HHHHHHHHH
Confidence            6799999999999998  69999999875531110  00                                001122332


Q ss_pred             HHHHHHHhcCCCCceeeceeeec-------cCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHH--HHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e-------~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~L~qI  444 (760)
                      .+..+    .+...+..-..+..       .....++||||++|++|.+......   ..+....+...+  +-..++.+
T Consensus        84 ~l~~~----~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~l  159 (496)
T PTZ00283         84 CLLNC----DFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHV  159 (496)
T ss_pred             HHhcC----CCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            22221    11111211111110       0112579999999999988653211   123333333222  22347889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+.........    ....+++.++++++...+..+...|++++..
T Consensus       160 H~~~IiHrDLKP~NILl~~--~~~vkL~DFGls~~~~~~~~~~~~----~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGv  233 (496)
T PTZ00283        160 HSKHMIHRDIKSANILLCS--NGLVKLGDFGFSKMYAATVSDDVG----RTFCGTPYYVAPEIWRRKPYSKKADMFSLGV  233 (496)
T ss_pred             HhCCEecCCCCHHHEEEeC--CCCEEEEecccCeecccccccccc----ccccCCcceeCHHHhCCCCCCcHHHHHHHHH
Confidence            9999999999999999986  789999999998876543221111    1123567788999888777778899999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       234 ilyeLlt  240 (496)
T PTZ00283        234 LLYELLT  240 (496)
T ss_pred             HHHHHHH
Confidence            8777654

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.6e-12  Score=136.11  Aligned_cols=185  Identities=19%  Similarity=0.193  Sum_probs=121.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||+|+.  +|+.|+||+.+......                                   ....+.+|..
T Consensus         7 ~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~-----------------------------------~~~~~~~e~~   51 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDD-----------------------------------DVSDIQREVA   51 (277)
T ss_pred             hheeccCCceEEEEEEcCCCcEEEEEEecCCCCch-----------------------------------hHHHHHHHHH
Confidence            5799999999999998  68999999876532211                                   0012234555


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++..  ..++++ .+... ....+..+++|||++|.+|.++....  .++...+...  .+...+..+|..|++|+|
T Consensus        52 ~l~~l~~--~~~~~vi~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~i~H~d  126 (277)
T cd06917          52 LLSQLRQ--SQPPNITKYYGS-YLKGPRLWIIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIHKVGVIHRD  126 (277)
T ss_pred             HHHHhcc--CCCCCeeeEeee-eeeCCEEEEEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            5555532  122332 22222 23345679999999999999875432  2333322222  233446789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++++|||.+..+........      ...+...+++++....+. .+...|++++...+.+++.
T Consensus       127 l~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~  197 (277)
T cd06917         127 IKAANILVTN--TGNVKLCDFGVAALLNQNSSKRS------TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMAT  197 (277)
T ss_pred             cCHHHEEEcC--CCCEEEccCCceeecCCCccccc------cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHh
Confidence            9999999986  78999999999988765432111      112444566677665443 3567899999887776654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.44  E-value=2.4e-13  Score=153.32  Aligned_cols=193  Identities=17%  Similarity=0.138  Sum_probs=128.7

Q ss_pred             hhhhhcccC-ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          289 LDDVFERFD-VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       289 ~~~iF~~fd-~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      |+..++++. .++||+||||.||||++.|. ||||+..-.--                                  -++-
T Consensus       387 WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd-VAVK~Lnv~~p----------------------------------t~~q  431 (678)
T KOG0193|consen  387 WEIPPEEVLLGERIGSGSFGTVYRGRWHGD-VAVKLLNVDDP----------------------------------TPEQ  431 (678)
T ss_pred             cccCHHHhhccceeccccccceeecccccc-eEEEEEecCCC----------------------------------CHHH
Confidence            444444443 36899999999999999885 99998643210                                  1222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCC--CeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLE  442 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st--~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~  442 (760)
                      .+.+.+|..++++-|+    .+-+    .+..+++  ...+|+.||+|-+|..........++...   ||+. +...+.
T Consensus       432 lqaFKnEVa~lkkTRH----~NIl----LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQ-iaqGM~  502 (678)
T KOG0193|consen  432 LQAFKNEVAVLKKTRH----ENIL----LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQ-IAQGMD  502 (678)
T ss_pred             HHHHHHHHHHHhhcch----hhhe----eeehhhcCCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHH-HHHhhh
Confidence            3345677666665543    1111    1233433  34899999999999987665554455433   3333 334478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC---CCCCCh
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL---VPTGDT  519 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~---~~~~D~  519 (760)
                      ++|..+|+|+|+|..|||+.+  ++++++.|||++..-+.-...    .=+..-.+..-+|+++++.|+-.   ++..|+
T Consensus       503 YLHAK~IIHrDLKSnNIFl~~--~~kVkIgDFGLatvk~~w~g~----~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDV  576 (678)
T KOG0193|consen  503 YLHAKNIIHRDLKSNNIFLHE--DLKVKIGDFGLATVKTRWSGE----QQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDV  576 (678)
T ss_pred             hhhhhhhhhhhccccceEEcc--CCcEEEecccceeeeeeeccc----cccCCCccchhhhcHHHHhhcccCCCCcccch
Confidence            899999999999999999985  799999999998654322111    11122345567889999988754   346799


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++|+-..++++.
T Consensus       577 YaFGiV~YELlt  588 (678)
T KOG0193|consen  577 YAFGIVWYELLT  588 (678)
T ss_pred             hhhhHHHHHHHh
Confidence            999988877764

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.44  E-value=1.3e-12  Score=135.34  Aligned_cols=183  Identities=19%  Similarity=0.229  Sum_probs=121.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.|++|+...+....                                   ....+.+|..
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~e~~   51 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEA-----------------------------------IQKQILRELD   51 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChH-----------------------------------HHHHHHHHHH
Confidence            5799999999999999  48999999876643211                                   1112233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~-~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||++|.+|.++........+...+...+.  -..+..+|. .|++|+|
T Consensus        52 ~l~~~~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~d  126 (265)
T cd06605          52 ILHKCN----SPYIVGFYGAF-YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRD  126 (265)
T ss_pred             HHHHCC----CCchhhhheee-ecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCC
Confidence            444331    11112222222 223567999999999999987643323334333333222  223678899 9999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||++++  ++.++|+|||.+..+.......        ..++..++.++...........|++++.-.+.+++.
T Consensus       127 l~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~--------~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~  194 (265)
T cd06605         127 VKPSNILVNS--RGQIKLCDFGVSGQLVNSLAKT--------FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELAT  194 (265)
T ss_pred             CCHHHEEECC--CCCEEEeecccchhhHHHHhhc--------ccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHh
Confidence            9999999986  7899999999987775443221        335566778888776666777899999877766553

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.43  E-value=1.3e-12  Score=136.57  Aligned_cols=184  Identities=12%  Similarity=0.090  Sum_probs=116.6

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|+||+||+|++     .+..||+|+.+.+....                                   ....+.+
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------~~~~~~~   55 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDK-----------------------------------QRRGFLA   55 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHH-----------------------------------HHHHHHH
Confidence            5799999999999986     25789999876542211                                   0112334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...+.++    .+..-+.+...+ ......++||||++|++|.++.......+....+....  +-..+..+|..|++|
T Consensus        56 e~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH  130 (266)
T cd05064          56 EALTLGQF----DHSNIVRLEGVI-TRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVH  130 (266)
T ss_pred             HHHHHhcC----CCCCcCeEEEEE-ecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEee
Confidence            44444433    222223333322 23456799999999999998764332233433332222  223468899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|++|.||+++.  ++.+++.|||...........  . .  ........+++++....+..+...|++++.-.+.++
T Consensus       131 ~dikp~nili~~--~~~~~l~dfg~~~~~~~~~~~--~-~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  201 (266)
T cd05064         131 KGLAAHKVLVNS--DLVCKISGFRRLQEDKSEAIY--T-T--MSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEV  201 (266)
T ss_pred             ccccHhhEEEcC--CCcEEECCCcccccccccchh--c-c--cCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHH
Confidence            999999999985  789999999987654322110  0 0  001112345677777767777888999998776554

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.43  E-value=1.6e-12  Score=135.19  Aligned_cols=197  Identities=17%  Similarity=0.107  Sum_probs=122.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|+||+|..  +|+.||+|+....-...-                           ......+....+.+|+.
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~---------------------------~~~~~~~~~~~~~~e~~   58 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSAS---------------------------SKDRKRSMLDALAREIA   58 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccc---------------------------hhHHHHHHHHHHHHHHH
Confidence            5799999999999998  589999998755311100                           00111223334556666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+... .......+++|||++|.+|.++.... ...+...   ++..++ ..+..+|..|++|+|
T Consensus        59 ~l~~l~----h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~-~~l~~lH~~~ivH~d  131 (267)
T cd06628          59 LLKELQ----HENIVQYLGS-SLDADHLNIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQIL-KGLNYLHNRGIIHRD  131 (267)
T ss_pred             HHHhcC----CCCeeeEEEE-EEeCCccEEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHH-HHHHHHHhcCccccc
Confidence            666552    2222222222 23345679999999999998875322 1223222   222222 346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++|+|||++..+.......-.........+...+++++....+..++..|++++...+.+++.
T Consensus       132 i~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~  207 (267)
T cd06628         132 IKGANILVDN--KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT  207 (267)
T ss_pred             CCHHHEEEcC--CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhh
Confidence            9999999985  889999999999877532110000000001123445667777666666777899999877766653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.43  E-value=1.1e-12  Score=140.73  Aligned_cols=184  Identities=17%  Similarity=0.257  Sum_probs=114.3

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+|.|++|.||+|+.  +|+.||+|.++-.-++.                . .|                 ....+|..-
T Consensus        18 klGeGtyg~Vykar~~~~g~~VALKkirl~~~~E----------------G-~P-----------------~taiREisl   63 (323)
T KOG0594|consen   18 KLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEE----------------G-VP-----------------STAIREISL   63 (323)
T ss_pred             HhCCCCceEEEEEEEecCCCEEEEEEEecccccc----------------C-CC-----------------chhhHHHHH
Confidence            499999999999998  69999999887642210                0 01                 012234444


Q ss_pred             HHHHHHhcCCCC-ceeeceeeeccCC-----CeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHHHH---HHHHHHH
Q 004334          378 AELFASNFKDMD-YVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE---SYLEQIL  445 (760)
Q Consensus       378 l~~f~~~~~~~~-~V~VP~vy~e~st-----~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~lv~---~~L~qI~  445 (760)
                      ++++.    +.+ -+.+-.++.....     ..+||+||++- +|.++.....   .|.+.. +....+.   ..+..+|
T Consensus        64 lk~L~----~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~-~ik~~m~Qll~gl~~~H  137 (323)
T KOG0594|consen   64 LKRLS----HANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPR-LIKSFMRQLLRGLAFLH  137 (323)
T ss_pred             HHHhC----CCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHhccccccCCCHH-HHHHHHHHHHHHHHHHH
Confidence            44442    222 4555555544442     66899999974 4555443222   355542 2222222   2256689


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      .+|++|||+||.||+|++  +|.++|+|||+++.++-..+. +..-+..+..+-++-    ++.--..++..|++++.-+
T Consensus       138 ~~~IlHRDLKPQNlLi~~--~G~lKlaDFGlAra~~ip~~~-yt~evvTlWYRaPEv----LlGs~~Ys~~vDiWs~GcI  210 (323)
T KOG0594|consen  138 SHGILHRDLKPQNLLISS--SGVLKLADFGLARAFSIPMRT-YTPEVVTLWYRAPEV----LLGSTSYSTSVDIWSLGCI  210 (323)
T ss_pred             hCCeecccCCcceEEECC--CCcEeeeccchHHHhcCCccc-ccccEEEeeccCHHH----hcCCCcCCCCcchHhHHHH
Confidence            999999999999999996  899999999999977644332 222222222233332    3333346778899999876


Q ss_pred             HHHHH
Q 004334          526 AQFFL  530 (760)
Q Consensus       526 ~~~~l  530 (760)
                      +.+++
T Consensus       211 faEm~  215 (323)
T KOG0594|consen  211 FAEMF  215 (323)
T ss_pred             HHHHH
Confidence            65554

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.43  E-value=1.2e-12  Score=135.91  Aligned_cols=184  Identities=15%  Similarity=0.144  Sum_probs=119.5

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.. +++.||||..+++-..                                     ...+.+|...
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------~~~~~~e~~~   54 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD-------------------------------------PKDFLAEAQI   54 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCCCccc-------------------------------------HHHHHHHHHH
Confidence            6899999999999998 5788999987763110                                     0112345555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      +.++.    +..-+.+.. +.......+++|||++|.+|.++..... ...+...+...+.+  ..+..+|..|++|+|+
T Consensus        55 l~~l~----h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  129 (261)
T cd05068          55 MKKLR----HPKLIQLYA-VCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDL  129 (261)
T ss_pred             HHHCC----CCCccceeE-EEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            55542    211122222 2234456799999999999998754322 22344444333322  3367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||++++  ++.++|+|||++..+.........    + ......+++++....+..+...|++++.-.+.+++.
T Consensus       130 ~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~----~-~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t  199 (261)
T cd05068         130 AARNVLVGE--NNICKVADFGLARVIKEDIYEARE----G-AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT  199 (261)
T ss_pred             CcceEEEcC--CCCEEECCcceEEEccCCcccccC----C-CcCceeccCccccccCCCCchhhHHHHHHHHHHHHh
Confidence            999999986  789999999999887633211000    0 001124566766666666778899999877766543

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.43  E-value=1.7e-12  Score=133.61  Aligned_cols=187  Identities=20%  Similarity=0.195  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.+ +|+.|++|+.+.....                                   +....+.+|...
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-----------------------------------~~~~~~~~e~~~   45 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-----------------------------------DLKRKFLQEAEI   45 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-----------------------------------HHHHHHHHHHHH
Confidence            3689999999999999 5899999976542111                                   011123445444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpH  455 (760)
                      +.++     +++++.-...+.......+++|||++|.+|.++........+...+......  ..+..+|..|++|+|++
T Consensus        46 l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~  120 (251)
T cd05041          46 LKQY-----DHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA  120 (251)
T ss_pred             HHhC-----CCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcC
Confidence            4443     2333322222333446689999999999998876433333444443333222  34678999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  ++.++|+|||++......... ..   .........+++++....+..+...|++++...+.+++.
T Consensus       121 p~nili~~--~~~~~l~d~g~~~~~~~~~~~-~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t  190 (251)
T cd05041         121 ARNCLVGE--NNVLKISDFGMSREEEGGIYT-VS---DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFS  190 (251)
T ss_pred             cceEEEcC--CCcEEEeeccccccccCCcce-ec---cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHh
Confidence            99999985  789999999998866532110 00   000011234566777666777788899999887776653

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.43  E-value=8e-13  Score=142.54  Aligned_cols=188  Identities=18%  Similarity=0.201  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                  .-...+.+|++
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~~   51 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHV----------------------------------SDATRILREIK   51 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccc----------------------------------hhHHHHHHHHH
Confidence            5799999999999998  58999999865421100                                  00112345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++.    +..-+.+..++....    ...++||||++| .|.++... ...+....+...+  +-..+..+|..|++
T Consensus        52 ~l~~l~----hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~iv  125 (338)
T cd07859          52 LLRLLR----HPDIVEIKHIMLPPSRREFKDIYVVFELMES-DLHQVIKA-NDDLTPEHHQFFLYQLLRALKYIHTANVF  125 (338)
T ss_pred             HHHhCC----CCCEeeecceEeccCCCCCceEEEEEecCCC-CHHHHHHh-cccCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            665552    222233333332211    236999999975 66665421 1123333322222  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCChHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l--G~~~~~~D~~al~~~~~~  528 (760)
                      |+|++|.||+++.  ++.++|+|||++..........   ....-..++..++++++...  +..++..|+++++-.+.+
T Consensus       126 H~dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~e  200 (338)
T cd07859         126 HRDLKPKNILANA--DCKLKICDFGLARVAFNDTPTA---IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAE  200 (338)
T ss_pred             cCCCCHHHeEECC--CCcEEEccCccccccccccCcc---ccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHH
Confidence            9999999999985  8899999999987653321111   00111234566777887653  455677899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       201 l~t  203 (338)
T cd07859         201 VLT  203 (338)
T ss_pred             HHc
Confidence            654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.42  E-value=2.9e-12  Score=135.50  Aligned_cols=184  Identities=16%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||+|++|.||+|..  +|+.||||+.++.....-..                                 .....+|...
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~---------------------------------~~~~~~~~~~   47 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQG---------------------------------ETLALNERIM   47 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchH---------------------------------HHHHHHHHHH
Confidence            379999999999998  58999999887632111000                                 0001111111


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +..+ .. .+++.  ++..+.  ......++||||++|++|.++.... ..+....+....  +-..+..+|..|++|+|
T Consensus        48 ~~~~-~~-~~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~~~ivH~d  122 (279)
T cd05633          48 LSLV-ST-GDCPF--IVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHNRFVVYRD  122 (279)
T ss_pred             HHHH-hh-CCCCc--EeEEEEEEecCCeEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCC
Confidence            1111 11 12233  333332  2335679999999999998765322 223333333222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||+++.  ++.++++|||++..++.....        ...+...+++++...-+ ..+...|++++.-.+.+++.
T Consensus       123 ikp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~  191 (279)
T cd05633         123 LKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLR  191 (279)
T ss_pred             CCHHHEEECC--CCCEEEccCCcceeccccCcc--------CcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHh
Confidence            9999999985  789999999998766543211        12355667777766433 34567899999877666543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.42  E-value=1.7e-12  Score=135.03  Aligned_cols=194  Identities=13%  Similarity=0.096  Sum_probs=120.1

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+||+|.. +|+.||||..+.......                              ...+....+.+|+..
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~------------------------------~~~~~~~~~~~e~~~   55 (265)
T cd06631           6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVL------------------------------AAEKEYEKLQEEVDL   55 (265)
T ss_pred             ceEeccCCeEEEEEEEcCCCeEEEEEeecCccchh------------------------------hHHHHHHHHHHHHHH
Confidence            5799999999999988 799999998665321110                              001112235566666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      ++++.    +..-+.+...+ ......+++|||++|++|.++.... .......+...+  +-..+..+|..|++|+|++
T Consensus        56 l~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  129 (265)
T cd06631          56 LKSLK----HVNIVQYLGTC-LDDNTISIFMEFVPGGSISSILNRF-GPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIK  129 (265)
T ss_pred             HHhcC----CCCEeeEeeEe-ecCCeEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC
Confidence            66552    22222222222 2335679999999999999875322 122333322221  2234678899999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~-~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||++++  ++.++|+|||++..+...... ...... ....+...+++++...-....+..|++++.-.+.+++.
T Consensus       130 p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~  203 (265)
T cd06631         130 GNNVMLMP--NGIIKLIDFGCARRLAWVGLHGTHSNML-KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMAT  203 (265)
T ss_pred             HHhEEECC--CCeEEeccchhhHhhhhccccccccccc-cccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHh
Confidence            99999985  789999999988765321100 000000 11124455667777665556677899998877665543

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.42  E-value=1.4e-12  Score=139.38  Aligned_cols=189  Identities=17%  Similarity=0.134  Sum_probs=115.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.++.|++|.||+|+.  .++.|+||...++....                                 ......+.+|..
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (305)
T cd05609           7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL---------------------------------RNQIQQVFVERD   53 (305)
T ss_pred             eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh---------------------------------HHHHHHHHHHHH
Confidence            6799999999999998  58999999765421000                                 001112334544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCC--CeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st--~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     +++  .+++++..+++  ..++||||++|++|.++..... ......+...+  +-..+..+|..|++|+
T Consensus        54 ~l~~~-----~~~--~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~  125 (305)
T cd05609          54 ILTFA-----ENP--FVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIG-ALPVDMARMYFAETVLALEYLHNYGIVHR  125 (305)
T ss_pred             HHHhC-----CCC--CeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence            44433     222  44566655444  3499999999999988763321 12222222211  2245788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH---------HHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL---------LEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l---------~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      |+||+||+++.  ++.++++|||++..........+         .........+...+++++...-+..++..|++++.
T Consensus       126 dl~p~NIll~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  203 (305)
T cd05609         126 DLKPDNLLITS--MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMG  203 (305)
T ss_pred             CCchHHEEECC--CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHH
Confidence            99999999985  88999999998763111100000         00000001234445666665555567788999988


Q ss_pred             HHHHHHH
Q 004334          524 RTAQFFL  530 (760)
Q Consensus       524 ~~~~~~l  530 (760)
                      -.+.+++
T Consensus       204 ~vl~el~  210 (305)
T cd05609         204 IILYEFL  210 (305)
T ss_pred             HHHHHHH
Confidence            7766554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.42  E-value=1.8e-12  Score=133.85  Aligned_cols=185  Identities=17%  Similarity=0.185  Sum_probs=120.4

Q ss_pred             ccccccccEEEEEEE-C--C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~--G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .||+|++|.||+|.+ +  |  ..||||+.+++...                                   +....+.+|
T Consensus         2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~e   46 (257)
T cd05040           2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-----------------------------------DIMDDFLKE   46 (257)
T ss_pred             cCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-----------------------------------HHHHHHHHH
Confidence            689999999999998 2  3  36999987764321                                   112223445


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.+.++.    +...+.+...+..  ...+++|||++|++|.+...... ...+...+....  +-..+..+|..|++|
T Consensus        47 ~~~l~~l~----h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H  120 (257)
T cd05040          47 AAIMHSLD----HENLIRLYGVVLT--HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIH  120 (257)
T ss_pred             HHHHhhcC----CCCccceeEEEcC--CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            55555442    2223334444433  67799999999999998654322 223333333222  223467889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++|+|||++..+..........   ....+...++.++.......+...|++++.-.+.+++
T Consensus       121 ~di~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~---~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~  194 (257)
T cd05040         121 RDLAARNILLAS--DDKVKIGDFGLMRALPQNEDHYVME---EHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMF  194 (257)
T ss_pred             cccCcccEEEec--CCEEEeccccccccccccccceecc---cCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHH
Confidence            999999999986  7899999999998875532210000   0112344567777776666677789999987766554

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=1.6e-12  Score=134.56  Aligned_cols=191  Identities=16%  Similarity=0.081  Sum_probs=121.5

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.+|.|++|+||+|..  +|++|++|+.+......-                              . ......+.+|+
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~------------------------------~-~~~~~~~~~e~   55 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPE------------------------------T-KKEVNALECEI   55 (263)
T ss_pred             cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchh------------------------------h-HHHHHHHHHHH
Confidence            36899999999999998  589999998765311100                              0 00012244565


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHH---HHHHHHHHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~---~la~~lv~~~L~qI~~~GffHa  452 (760)
                      ..+.++     +++++.-+.-+.+.....+++|||++|.+|.+...... .....   .++..++ ..+..+|..|++|+
T Consensus        56 ~~l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~-~~l~~lH~~~i~H~  128 (263)
T cd06625          56 QLLKNL-----QHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQIL-EGVEYLHSNMIVHR  128 (263)
T ss_pred             HHHHhC-----CCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHhC-CCCHHHHHHHHHHHH-HHHHHHHhCCeecC
Confidence            555554     23333322223344457899999999999988653221 12222   2233333 34678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+||+++.  +++++|+|||++..+........   ......+...++++++..........|++++.-.+.+++.
T Consensus       129 dl~p~nilv~~--~~~~~l~dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  202 (263)
T cd06625         129 DIKGANILRDS--AGNVKLGDFGASKRLQTICSSGT---GMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLT  202 (263)
T ss_pred             CCCHHHEEEcC--CCCEEEeecccceeccccccccc---cccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHh
Confidence            99999999985  78999999999887654321110   0001123445666776665556677899999887766553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PHA02988 hypothetical protein; Provisional

Probab=99.42  E-value=3.6e-12  Score=135.43  Aligned_cols=186  Identities=10%  Similarity=0.007  Sum_probs=121.3

Q ss_pred             CccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +...++.|+++.||+|.++|+.||||+.+..-...                                 .+..+.+.+|+.
T Consensus        24 ~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~E~~   70 (283)
T PHA02988         24 TSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGH---------------------------------KVLIDITENEIK   70 (283)
T ss_pred             CCeEEeeCCceEEEEEEECCEEEEEEecccccccc---------------------------------HHHHHHHHHHHH
Confidence            34679999999999999999999999876521100                                 111233456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeec---cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e---~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~Gff  450 (760)
                      .+.++.    +..-+.+-..+.+   .....+++|||++|++|.++..... ..+........  +...+..+|. .|++
T Consensus        71 ~l~~l~----h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~  145 (283)
T PHA02988         71 NLRRID----SNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEK-DLSFKTKLDMAIDCCKGLYNLYKYTNKP  145 (283)
T ss_pred             HHHhcC----CCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhCC-CCChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence            777663    2222333333322   1235689999999999998764322 23322222222  2233677887 5999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCChHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l--G~~~~~~D~~al~~~~~~  528 (760)
                      |+|++|.||+++.  ++.++++|||++..++.....         ..+...++++++..-  +..+...|+++++-.+.+
T Consensus       146 Hrdlkp~nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~e  214 (283)
T PHA02988        146 YKNLTSVSFLVTE--NYKLKIICHGLEKILSSPPFK---------NVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWE  214 (283)
T ss_pred             CCcCChhhEEECC--CCcEEEcccchHhhhcccccc---------ccCcccccCHHHhhhccccccchhhhhHHHHHHHH
Confidence            9999999999986  789999999998766543211         123445566666543  455778899999987776


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       215 l~~  217 (283)
T PHA02988        215 IFT  217 (283)
T ss_pred             HHH
Confidence            654

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.42  E-value=2.2e-12  Score=135.49  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=119.3

Q ss_pred             cccccccccEEEEEEEC--C-----eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G-----~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|...  +     ..|++|..+......                                   ....+
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~-----------------------------------~~~~~   55 (283)
T cd05048          11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-----------------------------------VQQEF   55 (283)
T ss_pred             hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHH-----------------------------------HHHHH
Confidence            57999999999999982  3     679999876532111                                   11223


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGR  434 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~  434 (760)
                      .+|...+.++.     +++  +.+++.  ......+++|||++|++|.++.....               ..++...+..
T Consensus        56 ~~ei~~l~~l~-----h~~--i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  128 (283)
T cd05048          56 RQEAELMSDLQ-----HPN--IVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLH  128 (283)
T ss_pred             HHHHHHHHhcC-----Ccc--cceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHH
Confidence            45555555442     222  222222  23456799999999999988654321               1123333322


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          435 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       435 ~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      .+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    .-...+..+++++....+.
T Consensus       129 ~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~L~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~  202 (283)
T cd05048         129 IAIQIAAGMEYLSSHHFVHRDLAARNCLVGE--GLTVKISDFGLSRDIYSADYYRVQ----SKSLLPVRWMPPEAILYGK  202 (283)
T ss_pred             HHHHHHHHHHHHHhCCeeccccccceEEEcC--CCcEEECCCcceeecccccccccc----CCCcccccccCHHHhccCc
Confidence            22  223468899999999999999999985  789999999998866433211100    0011245678888877777


Q ss_pred             CCCCCChHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l  530 (760)
                      .++..|++++.-.+.+++
T Consensus       203 ~~~~sDv~slG~il~el~  220 (283)
T cd05048         203 FTTESDIWSFGVVLWEIF  220 (283)
T ss_pred             CchhhhHHHHHHHHHHHH
Confidence            788899999988777665

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.42  E-value=3.1e-12  Score=132.32  Aligned_cols=179  Identities=15%  Similarity=0.137  Sum_probs=118.6

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.+|.|++|.||+|...|+.||||..+....                                     ....+.+|...+
T Consensus        12 ~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~-------------------------------------~~~~~~~e~~~l   54 (256)
T cd05039          12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDST-------------------------------------AAQAFLAEASVM   54 (256)
T ss_pred             eeeecCCCceEEEEEecCcEEEEEEeccchh-------------------------------------HHHHHHHHHHHH
Confidence            6799999999999999999999998654211                                     011233444444


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++    .+..-+.+...+ ...+..+++|||++|.+|.++...... ......+....  +-..+..+|..|++|+|++
T Consensus        55 ~~l----~~~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~  129 (256)
T cd05039          55 TTL----RHPNLVQLLGVV-LQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLA  129 (256)
T ss_pred             Hhc----CCcceeeeEEEE-cCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcc
Confidence            444    222222232322 236778999999999999987643221 23333332222  2233678999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||+++.  ++.++|+|||.+.........         ......+++++....+...+..|++++...+.+++
T Consensus       130 p~Nili~~--~~~~~l~d~g~~~~~~~~~~~---------~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~  193 (256)
T cd05039         130 ARNVLVSE--DLVAKVSDFGLAKEASQGQDS---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  193 (256)
T ss_pred             cceEEEeC--CCCEEEccccccccccccccc---------CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHH
Confidence            99999985  889999999999887543221         11233456666666666777789999887765554

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.42  E-value=2.1e-12  Score=133.91  Aligned_cols=183  Identities=16%  Similarity=0.161  Sum_probs=120.5

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.. +++.||+|...+.-..                                     ...+.+|...
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------~~~~~~e~~~   54 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS-------------------------------------VQAFLEEANL   54 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccCCchh-------------------------------------HHHHHHHHHH
Confidence            5799999999999998 6788999986652110                                     0123445555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++     +++++.-...+.......+++|||++|++|.++..... .......+....  +...+..+|..|++|+|+
T Consensus        55 l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl  129 (261)
T cd05072          55 MKTL-----QHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDL  129 (261)
T ss_pred             HHhC-----CCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecccc
Confidence            5544     22333222222233456799999999999998754321 223333332222  233478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||++++  ++.+++.|||.+..+.......     .........+++++....+..++..|++++.-.+.+++
T Consensus       130 ~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~  198 (261)
T cd05072         130 RAANVLVSE--SLMCKIADFGLARVIEDNEYTA-----REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIV  198 (261)
T ss_pred             chhhEEecC--CCcEEECCCccceecCCCceec-----cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHH
Confidence            999999986  7899999999998875432110     00111234567777777777777889999988776665

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.42  E-value=3e-12  Score=132.65  Aligned_cols=187  Identities=14%  Similarity=0.070  Sum_probs=118.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||+|..++.-...                                 ......+.+|..
T Consensus         8 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~~~~~~~ei~   54 (267)
T cd08224           8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD---------------------------------AKARQDCLKEID   54 (267)
T ss_pred             eeeccCCceEEEEEEEcCCCCEEEEEEeecccccc---------------------------------hhhHHHHHHHHH
Confidence            6799999999999999  59999999876411000                                 001123445555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHHH--HHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAV--ESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~lv--~~~L~qI~~~GffH  451 (760)
                      .+.++    .+...+.+...+ ......+++|||++|++|.++....   ...+....+...+.  -..+..+|..|++|
T Consensus        55 ~l~~~----~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h  129 (267)
T cd08224          55 LLKQL----DHPNVIKYLASF-IENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMH  129 (267)
T ss_pred             HHHhC----CCCCeeeeeeee-ecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEec
Confidence            44444    222222222222 2345679999999999998865321   11233333333222  22367789999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|++|.||+++.  ++.++++|||++..+........      ...+...+++++.......+...|++++...+.+++.
T Consensus       130 ~dl~p~nil~~~--~~~~~l~d~~~~~~~~~~~~~~~------~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~  201 (267)
T cd08224         130 RDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAAH------SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA  201 (267)
T ss_pred             CCcChhhEEECC--CCcEEEeccceeeeccCCCcccc------eecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHH
Confidence            999999999985  78999999999887654322110      0123444556666655555667899999887766654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.42  E-value=2.9e-12  Score=133.42  Aligned_cols=187  Identities=15%  Similarity=0.159  Sum_probs=119.8

Q ss_pred             ccccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      .+.||.|++|.||+|++.     ...||||+.+++....                                   ....+.
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------~~~~~~   53 (266)
T cd05033           9 EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDK-----------------------------------QRLDFL   53 (266)
T ss_pred             eeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChH-----------------------------------HHHHHH
Confidence            368999999999999982     3579999877643211                                   111223


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gff  450 (760)
                      .|...+.++    .+..-+.+...+ ......+++|||++|.+|.++.......++...+.....  -..+..+|..|++
T Consensus        54 ~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~  128 (266)
T cd05033          54 TEASIMGQF----DHPNIIRLEGVV-TKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYV  128 (266)
T ss_pred             HHHHHHHhC----CCCCcceEeEEE-ecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            344444444    222222222222 233557999999999999987644333344444433322  2336789999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|++|.||++++  ++.++++|||++..+...... +..   ........+++++....+..++..|++++.-.+.+++
T Consensus       129 H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~-~~~---~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~  202 (266)
T cd05033         129 HRDLAARNILVNS--NLVCKVSDFGLSRRLEDSEAT-YTT---KGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM  202 (266)
T ss_pred             cCCCCcceEEEcC--CCCEEECccchhhcccccccc-eec---cCCCCCccccChhhhccCCCccccchHHHHHHHHHHH
Confidence            9999999999986  789999999999887522111 000   0011234567777776666778889999987765543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.42  E-value=1.4e-12  Score=142.99  Aligned_cols=183  Identities=19%  Similarity=0.194  Sum_probs=115.5

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||+|++|.||+|+.  +|+.||||+........                                  +....+.+|.
T Consensus        26 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~   71 (359)
T cd07876          26 LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQ----------------------------------THAKRAYREL   71 (359)
T ss_pred             EEEeecCCCEEEEEEEEcCCCceeEEEEecccccch----------------------------------hHHHHHHHHH
Confidence            37899999999999998  58999999875422111                                  0011223444


Q ss_pred             HHHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      ..+..+    .+..-+.+..++...     ....++||||++|.....+.    ..++...+...+  +-..+..+|.+|
T Consensus        72 ~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~  143 (359)
T cd07876          72 VLLKCV----NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH----MELDHERMSYLLYQMLCGIKHLHSAG  143 (359)
T ss_pred             HHHHhC----CCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            444433    222233333333211     12469999999985433221    123333332222  234478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.||+++.  ++.++|+|||++.........       .-..++..++++++.......+..|+++++-.+.+
T Consensus       144 ivHrDlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~e  214 (359)
T cd07876         144 IIHRDLKPSNIVVKS--DCTLKILDFGLARTACTNFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  214 (359)
T ss_pred             cccCCCCHHHEEECC--CCCEEEecCCCccccccCccC-------CCCcccCCCCCchhccCCCCCcchhhHHHHHHHHH
Confidence            999999999999986  889999999998765432110       01123455677777766666778899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       215 l~t  217 (359)
T cd07876         215 LVK  217 (359)
T ss_pred             HHh
Confidence            654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.42  E-value=4.6e-12  Score=131.52  Aligned_cols=183  Identities=17%  Similarity=0.170  Sum_probs=121.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+||+|.. .+..||+|..+++....                                     ..+.+|+..
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~-------------------------------------~~~~~E~~~   54 (260)
T cd05070          12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSP-------------------------------------ESFLEEAQI   54 (260)
T ss_pred             heeccccCceEEEEEecCCceeEEEEecCCCCCH-------------------------------------HHHHHHHHH
Confidence            4799999999999998 57889999987742110                                     113345444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+...+.+...+  .....+++|||++|++|.++..... ...+...+....  +-..+..+|..|++|+|+
T Consensus        55 l~~l----~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di  128 (260)
T cd05070          55 MKKL----RHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDL  128 (260)
T ss_pred             HHhc----CCCceEEEEeEE--CCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            4444    233333443333  2356799999999999988754221 123333332222  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||.+..+........     .-..+...+++++....+..+...|++++...+.+++.
T Consensus       129 ~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~  198 (260)
T cd05070         129 RSANILVGD--GLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT  198 (260)
T ss_pred             ccceEEEeC--CceEEeCCceeeeeccCcccccc-----cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHh
Confidence            999999986  78999999999987754321110     00112345777887776777778999999887776653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.41  E-value=2.9e-12  Score=134.63  Aligned_cols=190  Identities=16%  Similarity=0.178  Sum_probs=121.1

Q ss_pred             hhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       289 ~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      ++++|...  +.||+|++|.||+|..  +|+.||||+.......                                   .
T Consensus         2 ~~~~~~~~--~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~-----------------------------------~   44 (277)
T cd06641           2 PEELFTKL--EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE-----------------------------------D   44 (277)
T ss_pred             HHHhhhhh--eeEeecCCeEEEEEEECCCCcEEEEEEeccccch-----------------------------------H
Confidence            34555543  4699999999999987  5899999986431100                                   0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  444 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI  444 (760)
                      ....+.+|...+.++    .+..-+.+...+ ......++||||++|+++.++...  ...+...+.....+  ..+..+
T Consensus        45 ~~~~~~~e~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~i~~--~~~~~~~~~~~~~~l~~~l~~l  117 (277)
T cd06641          45 EIEDIQQEITVLSQC----DSPYVTKYYGSY-LKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYL  117 (277)
T ss_pred             HHHHHHHHHHHHHhc----CCCCEeEEEEEE-EeCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            112234455555444    222223333333 334568999999999999886532  23344444333222  236778


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      |..|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..+++++....+...+..|++++..
T Consensus       118 h~~~i~h~dl~p~Ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~  189 (277)
T cd06641         118 HSEKKIHRDIKAANVLLSE--HGEVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDSKADIWSLGI  189 (277)
T ss_pred             ccCCeecCCCCHHhEEECC--CCCEEEeecccceecccchhhh------ccccCCccccChhhhccCCCCchhhHHHHHH
Confidence            9999999999999999985  7899999999988776532111      1112344456666665555666789999887


Q ss_pred             HHHHHH
Q 004334          525 TAQFFL  530 (760)
Q Consensus       525 ~~~~~l  530 (760)
                      .+.+++
T Consensus       190 ~l~~l~  195 (277)
T cd06641         190 TAIELA  195 (277)
T ss_pred             HHHHHH
Confidence            665543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.41  E-value=1.7e-12  Score=138.42  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=119.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||.....-...                                    ...+.+|..
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~~~~~e~~   68 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPK------------------------------------KELIINEIL   68 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccch------------------------------------HHHHHHHHH
Confidence            5799999999999997  69999999764321100                                    011234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+..+     +++++.-+.-+.......++||||++|.++.++...  ...+...+...+.+  ..+..+|..|++|+|+
T Consensus        69 ~l~~~-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL  141 (297)
T cd06656          69 VMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALDFLHSNQVIHRDI  141 (297)
T ss_pred             HHHhC-----CCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            33332     223322222222345567999999999999987532  22333333332222  3367899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++++|||.+..+.+.....      ....+++.+++++....+..++..|++++.-.+.+++.
T Consensus       142 ~p~Nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~t  210 (297)
T cd06656         142 KSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE  210 (297)
T ss_pred             CHHHEEECC--CCCEEECcCccceEccCCccCc------CcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999985  7899999999988776543211      11234556777777766666778899999877766553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.41  E-value=3.6e-12  Score=131.61  Aligned_cols=181  Identities=13%  Similarity=0.081  Sum_probs=117.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+||+|.. +++.+|||+.+.+....                                     ..+.+|.+.
T Consensus        10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~-------------------------------------~~~~~e~~~   52 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSE-------------------------------------EDFIEEAQV   52 (256)
T ss_pred             eeecCcccceEEEEEEeCCCeEEEEECCCCCCCH-------------------------------------HHHHHHHHH
Confidence            5799999999999998 58899999876532110                                     112345555


Q ss_pred             HHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      +.++     ++++  +++.+  .......+++|||++|++|.++............+.....  -..+..+|..|++|+|
T Consensus        53 l~~l-----~~~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~d  125 (256)
T cd05112          53 MMKL-----SHPK--LVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRD  125 (256)
T ss_pred             HHhC-----CCCC--eeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence            5544     1222  22333  2334567999999999999887543322233333332222  2346778999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||+++.  ++.++++|||++..+........     ........+++++...-+..+...|++++...+.+++
T Consensus       126 l~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~~-----~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~  195 (256)
T cd05112         126 LAARNCLVGE--NQVVKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVF  195 (256)
T ss_pred             cccceEEEcC--CCeEEECCCcceeecccCccccc-----CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHH
Confidence            9999999985  78999999999887644311000     0001123566777766666677789999887665544

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.41  E-value=2.4e-12  Score=134.04  Aligned_cols=188  Identities=14%  Similarity=0.179  Sum_probs=118.7

Q ss_pred             ccccccccccEEEEEEE--CC---eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G---~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      .+.||.|++|+||+|++  +|   ..|+||..+++.....                                   ...+.
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~-----------------------------------~~~~~   54 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ-----------------------------------RQDFL   54 (268)
T ss_pred             eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHH-----------------------------------HHHHH
Confidence            36899999999999998  34   3799998766422110                                   11233


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|++.+.++    .+..-+.+...+ ......+++|||++|.+|.++........+...+....  +...+..+|..|++
T Consensus        55 ~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~  129 (268)
T cd05063          55 SEASIMGQF----SHHNIIRLEGVV-TKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYV  129 (268)
T ss_pred             HHHHHHhcC----CCCCeeEEEEEE-ccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            444444333    222223333333 23356799999999999988764332233433333322  22346889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||++++  ++.++++|||+...+...........   .......+++++....+..+...|++++.-.+.+++
T Consensus       130 H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~~---~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell  204 (268)
T cd05063         130 HRDLAARNILVNS--NLECKVSDFGLSRVLEDDPEGTYTTS---GGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM  204 (268)
T ss_pred             ccccchhhEEEcC--CCcEEECCCccceecccccccceecc---CCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHH
Confidence            9999999999985  78999999999987754332211100   001123456677766666677889999887665543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.41  E-value=5.8e-12  Score=123.00  Aligned_cols=180  Identities=18%  Similarity=0.236  Sum_probs=118.9

Q ss_pred             cccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      |++|++|+||+++..  |++++||+.+++....                                   ....+.+|.+.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-----------------------------------~~~~~~~e~~~~   45 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-----------------------------------LLEELLREIEIL   45 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-----------------------------------HHHHHHHHHHHH
Confidence            689999999999994  9999999987743221                                   112344555555


Q ss_pred             HHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          379 ELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      ..+..       ..+|.++.  ...+..+++|||++|.+|.++........+........  +...+..+|..|++|+|+
T Consensus        46 ~~l~~-------~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl  118 (215)
T cd00180          46 KKLNH-------PNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDL  118 (215)
T ss_pred             HhcCC-------CCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCC
Confidence            55532       23444443  33357899999999999998764332234443333322  223468899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~  529 (760)
                      +|+||++++ .+++++|+|||.+........      ..........++.++....+ ......|.+++...+.++
T Consensus       119 ~~~ni~~~~-~~~~~~l~d~~~~~~~~~~~~------~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         119 KPENILLDS-DNGKVKLADFGLSKLLTSDKS------LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             CHhhEEEeC-CCCcEEEecCCceEEccCCcc------hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            999999984 257999999999998876542      01112234445555555554 555667888887655444

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.41  E-value=5.5e-12  Score=130.62  Aligned_cols=181  Identities=17%  Similarity=0.165  Sum_probs=118.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.+ +++.||||+..++....                                     ..+.+|...
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~-------------------------------------~~~~~e~~~   54 (261)
T cd05034          12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP-------------------------------------EAFLQEAQI   54 (261)
T ss_pred             eeeccCcceEEEEEEEcCCceEEEEEecCCccCH-------------------------------------HHHHHHHHH
Confidence            6899999999999998 56889999877632110                                     112344444


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ++++    . ++  .+++.+.  ......+++|||++|.+|.++..... ...+...+...+  +-..+..+|..|++|+
T Consensus        55 l~~l----~-h~--~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~  127 (261)
T cd05034          55 MKKL----R-HD--KLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHR  127 (261)
T ss_pred             HhhC----C-CC--CEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4443    2 22  2333332  23356799999999999988754322 123333332222  2233678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||++++  ++.++++|||.+..+.........     -......+++++...-+..++..|++++...+.+++
T Consensus       128 di~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~~~-----~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~  198 (261)
T cd05034         128 DLAARNILVGE--NLVCKIADFGLARLIEDDEYTARE-----GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIV  198 (261)
T ss_pred             CcchheEEEcC--CCCEEECccccceeccchhhhhhh-----ccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHH
Confidence            99999999986  799999999999887642211100     011223466777766666677889999987766654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.41  E-value=1.8e-12  Score=136.39  Aligned_cols=187  Identities=18%  Similarity=0.160  Sum_probs=115.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||+|+.+......                       .    .       .....+|..
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~-----------------------~----~-------~~~~~~e~~   51 (288)
T cd07863           6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED-----------------------G----L-------PLSTVREVA   51 (288)
T ss_pred             eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC-----------------------C----C-------chHHHHHHH
Confidence            5699999999999998  58999999876532110                       0    0       001122333


Q ss_pred             HHHHHHHhcCCCCceeeceeeec----cCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e----~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .++++.. +.+..-+.+..++..    .....+++|||++| .+.++... ...+++...+...+  +-..+..+|..|+
T Consensus        52 ~l~~l~~-~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  129 (288)
T cd07863          52 LLKRLEA-FDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCI  129 (288)
T ss_pred             HHHHhhh-cCCCCeeeeeeeeccccCCCCceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3333321 122222222222221    12346899999997 56554322 22234444433332  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|+||+++.  ++.++|+|||++..++.....       ....++..+++++....+..+...|+++++-.+.++
T Consensus       130 vH~dikp~Nili~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  200 (288)
T cd07863         130 VHRDLKPENILVTS--GGQVKLADFGLARIYSCQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM  200 (288)
T ss_pred             ecCCCCHHHEEECC--CCCEEECccCccccccCcccC-------CCccccccccCchHhhCCCCCCcchhhhHHHHHHHH
Confidence            99999999999985  789999999998876543210       011234556777777666677889999999877666


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       201 ~  201 (288)
T cd07863         201 F  201 (288)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.41  E-value=1.1e-12  Score=134.18  Aligned_cols=138  Identities=21%  Similarity=0.299  Sum_probs=96.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .+||+||||.+|.|..  +|++||||+-...+...                                      .|.-|++
T Consensus        21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hp--------------------------------------qL~yEsk   62 (341)
T KOG1163|consen   21 RKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHP--------------------------------------QLLYESK   62 (341)
T ss_pred             EeecCCchhheeeeeeccCCceEEEEeecccCCCc--------------------------------------chhHHHH
Confidence            6899999999999998  79999999865543221                                      1223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCC--eEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~--~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~GffH  451 (760)
                      --..++      ..+.+|.+.+-.+.+  .|||||.. |.+|.|+.......+..+.+   |..++. -++.+|.++|+|
T Consensus        63 vY~iL~------~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~-RiEyvH~r~fiH  134 (341)
T KOG1163|consen   63 VYRILQ------GGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLS-RIEYVHLRNFIH  134 (341)
T ss_pred             HHHHhc------cCCCCchhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHH-HHHHHHhhcccc
Confidence            333332      346788888755543  59999998 89999987665544444332   222222 267789999999


Q ss_pred             cCCCCCcEEEec-cCCCcEEEEeecceeccCh
Q 004334          452 ADPHPGNIAVDD-VNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       452 aDpHPGNILV~~-~~~g~l~LiDFG~v~~l~~  482 (760)
                      +|+||.|+|..- ..-.++.|||||+++.+-+
T Consensus       135 RDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d  166 (341)
T KOG1163|consen  135 RDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRD  166 (341)
T ss_pred             ccCCccceeeccccccceEEEEeccchhhhcc
Confidence            999999999852 1235899999999987643

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.41  E-value=3.6e-12  Score=130.92  Aligned_cols=183  Identities=16%  Similarity=0.172  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEEC--C----eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G----~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.+|.|++|+||+|+..  +    ..||+|+.++.....                                   ....+.
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~   49 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ-----------------------------------QIEEFL   49 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH-----------------------------------HHHHHH
Confidence            57999999999999993  3    889999987642211                                   112234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcC-CCHHHHHHHHH--HHHHHHHHhC
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAV--ESYLEQILSH  447 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g-~d~~~la~~lv--~~~L~qI~~~  447 (760)
                      +|...+..+     ++++  +++.+.  ......+++|||++|.+|.++....... .+...+...+.  -..+..+|..
T Consensus        50 ~e~~~l~~l-----~~~~--i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~  122 (258)
T smart00219       50 REARIMRKL-----DHPN--IVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK  122 (258)
T ss_pred             HHHHHHHhc-----CCCc--hheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            454444444     2222  233332  2235689999999999998876432221 44444333322  2246788999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      |++|+|++|+||++++  ++.++|+|||++........  +..   ........+++++....+..+...|++++.-.+.
T Consensus       123 ~~~h~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~--~~~---~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~  195 (258)
T smart00219      123 NFIHRDLAARNCLVGE--NLVVKISDFGLSRDLYDDDY--YKK---KGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLW  195 (258)
T ss_pred             CeeecccccceEEEcc--CCeEEEcccCCceecccccc--ccc---ccCCCcccccChHHhccCCCCcchhHHHHHHHHH
Confidence            9999999999999986  78999999999987765411  000   0011234566677766677788899999987665


Q ss_pred             HHH
Q 004334          528 FFL  530 (760)
Q Consensus       528 ~~l  530 (760)
                      +++
T Consensus       196 ~l~  198 (258)
T smart00219      196 EIF  198 (258)
T ss_pred             HHH
Confidence            554

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.41  E-value=1.9e-12  Score=135.54  Aligned_cols=186  Identities=17%  Similarity=0.125  Sum_probs=119.9

Q ss_pred             cccccccccEEEEEEE-C------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.+|.|++|.||+|+. +      ++.||||+.+....                                   .+....+
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~-----------------------------------~~~~~~~   55 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS-----------------------------------NDARKDF   55 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCC-----------------------------------HHHHHHH
Confidence            5799999999999987 2      47899998654211                                   1122334


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-------------cCCCHHHHHHHH--
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRLGRYA--  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-------------~g~d~~~la~~l--  436 (760)
                      .+|++.++++.    +..-+.+... .......+++|||++|++|.++.....             ..+....+...+  
T Consensus        56 ~~e~~~l~~l~----~~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (280)
T cd05049          56 EREAELLTNFQ----HENIVKFYGV-CTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQ  130 (280)
T ss_pred             HHHHHHHHhcC----CCCchheeeE-EecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHH
Confidence            56666666552    2222222222 233467899999999999998754221             111222222221  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          437 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       437 v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      +-..+..+|..|++|+|++|+||+++.  ++.++|+|||++..+........    .........++++++...+..++.
T Consensus       131 i~~~l~~lH~~~i~h~dlkp~nili~~--~~~~kl~d~g~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~  204 (280)
T cd05049         131 IASGMVYLASQHFVHRDLATRNCLVGY--DLVVKIGDFGMSRDVYTTDYYRV----GGHTMLPIRWMPPESIMYRKFTTE  204 (280)
T ss_pred             HHHHHHHHhhCCeeccccccceEEEcC--CCeEEECCcccceecccCcceec----CCCCcccceecChhhhccCCcchh
Confidence            223367889999999999999999986  79999999999876533211000    000112356788888887878888


Q ss_pred             CChHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFL  530 (760)
Q Consensus       517 ~D~~al~~~~~~~l  530 (760)
                      .|++++.-.+.+++
T Consensus       205 ~Di~slG~il~e~~  218 (280)
T cd05049         205 SDVWSFGVVLWEIF  218 (280)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999987776655

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.40  E-value=3.8e-12  Score=131.31  Aligned_cols=186  Identities=12%  Similarity=0.056  Sum_probs=119.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|.|++|.||+|..  +|+.||||........                                  .+..+.+.+|..
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS----------------------------------RRERKAAEQEAQ   51 (257)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC----------------------------------HHHHHHHHHHHH
Confidence            5799999999999998  5889999975431100                                  001112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+...+.+...+.......+++|||++|.++.+...... ...+...+...+.  -..+..+|..|++|+|
T Consensus        52 ~l~~l----~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~d  127 (257)
T cd08223          52 LLSQL----KHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRD  127 (257)
T ss_pred             HHHhC----CCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccC
Confidence            44444    222223333333223334689999999999988654321 2234333333222  2346889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||+++.  ++.++|+|||++..+......      .....+.+.+++++....+..++..|++++...+.+++
T Consensus       128 i~p~nil~~~--~~~~~l~df~~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~  196 (257)
T cd08223         128 LKTQNVFLTR--TNIIKVGDLGIARVLENQCDM------ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMA  196 (257)
T ss_pred             CCchhEEEec--CCcEEEecccceEEecccCCc------cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHH
Confidence            9999999985  789999999998876432210      01123455677888877777777889999987766554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.40  E-value=3.5e-12  Score=132.08  Aligned_cols=182  Identities=13%  Similarity=0.106  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|++ ++..||+|..+.+-..                                     ...+.+|+..
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~-------------------------------------~~~~~~e~~~   52 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAINEGAMS-------------------------------------EEDFIEEAKV   52 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecccCCcc-------------------------------------HHHHHHHHHH
Confidence            5699999999999999 5678999976542100                                     0123445555


Q ss_pred             HHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++.     ++++ .+... .......+++|||++|++|.++........+...+....  +-..+..+|..|++|+|+
T Consensus        53 l~~l~-----h~~i~~~~~~-~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  126 (256)
T cd05114          53 MMKLS-----HPKLVQLYGV-CTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDL  126 (256)
T ss_pred             HHHCC-----CCCceeEEEE-EccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccccc
Confidence            55542     2332 22222 234456799999999999988654322223433333322  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||++++  ++.++++|||.+..+.......-     ........+++++.......+...|++++.-.+.+++
T Consensus       127 ~p~ni~i~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~  195 (256)
T cd05114         127 AARNCLVSS--TGVVKVSDFGMTRYVLDDEYTSS-----SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVF  195 (256)
T ss_pred             CcceEEEcC--CCeEEECCCCCccccCCCceecc-----CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHH
Confidence            999999985  78999999999887643221100     0011223566677766555667789999887766554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.40  E-value=2.4e-12  Score=135.75  Aligned_cols=189  Identities=18%  Similarity=0.169  Sum_probs=121.8

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      ..||.|++|.||.|+.      +|..||+|..++.....                                   ....+.
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------~~~~~~   54 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN-----------------------------------HIADLK   54 (284)
T ss_pred             eecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHH-----------------------------------HHHHHH
Confidence            4699999999999984      37899999877642111                                   111234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|...++++    .+...+.+...+... ....++||||++|++|.++........+...+...+  +...+..+|..|+
T Consensus        55 ~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi  130 (284)
T cd05079          55 KEIEILRNL----YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQY  130 (284)
T ss_pred             HHHHHHHhC----CCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            555555544    232233333333322 234689999999999998764322223433332222  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++.  ++.++|.|||++..+.......  . ......+...+++++....+..++..|++++.-.+.++
T Consensus       131 ~H~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~--~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el  205 (284)
T cd05079         131 VHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYY--T-VKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYEL  205 (284)
T ss_pred             eecccchheEEEcC--CCCEEECCCccccccccCccce--e-ecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhh
Confidence            99999999999985  7899999999998775432110  0 00112234446677766666667789999999877776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       206 lt  207 (284)
T cd05079         206 LT  207 (284)
T ss_pred             hc
Confidence            53

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.40  E-value=5.9e-12  Score=129.59  Aligned_cols=181  Identities=19%  Similarity=0.179  Sum_probs=121.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+++|++|.||+|+.  +|+.|++|.......                                      ...+.+|.+
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--------------------------------------~~~~~~e~~   50 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--------------------------------------LQEIIKEIS   50 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--------------------------------------HHHHHHHHH
Confidence            5799999999999999  489999998654100                                      122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|.+|.++.......++...+...+.+  ..+..+|..|++|+|+
T Consensus        51 ~~~~l----~~~~i~~~~~~~-~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl  125 (256)
T cd06612          51 ILKQC----DSPYIVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDI  125 (256)
T ss_pred             HHHhC----CCCcEeeeeeee-ecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            55544    222223333322 2235678999999999999976543334444443333222  3467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+++.  ++.++|.|||++..+.......      ....+...++.++.......+...|+++++-.+.+++
T Consensus       126 ~~~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~  193 (256)
T cd06612         126 KAGNILLNE--EGQAKLADFGVSGQLTDTMAKR------NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMA  193 (256)
T ss_pred             CcceEEECC--CCcEEEcccccchhcccCcccc------ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence            999999986  7899999999998876543211      1122445567777766666667789999987766654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-12  Score=141.92  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-||.||+|.||.|..  +|+..|||...-.-                              .+      ..+.+.+|.+
T Consensus        23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~------------------------------~~------~~~~l~~Ei~   66 (313)
T KOG0198|consen   23 KLLGRGSFGSVYLATNKKTGELMAVKSVELED------------------------------SP------TSESLEREIR   66 (313)
T ss_pred             ccccCccceEEEEEEecCCCcceeeeeeeccc------------------------------ch------hHHHHHHHHH
Confidence            5799999999999999  49999999642210                              00      0234556666


Q ss_pred             HHHHHHHhcCCCCceeeceeee---ccCC-CeEEEEeecCCCchhhhhhhhhcCCCHHHHHH--HHHHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW---EYTT-PQILTMEYVPGIKINRIQSLDELGVDRKRLGR--YAVESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~---e~st-~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~--~lv~~~L~qI~~~Gff  450 (760)
                      .+.++.     +++|  -+.|.   ...+ ...+.|||++|++|.++..-....+....+..  ..+-.-+.++|.+||+
T Consensus        67 iL~~l~-----~p~I--V~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~v  139 (313)
T KOG0198|consen   67 ILSRLN-----HPNI--VQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIV  139 (313)
T ss_pred             HHHhCC-----CCCE--EeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            666553     2221  11121   1111 47899999999999997653332233222221  2233347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTA  526 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~  526 (760)
                      |||+||.|||++. .++.++|.|||+++........   .....-..+.+.+|+++.+.-|. ..+..|++++.-.+
T Consensus       140 H~DiK~~NiLl~~-~~~~~KlaDFG~a~~~~~~~~~---~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtV  212 (313)
T KOG0198|consen  140 HCDIKPANILLDP-SNGDVKLADFGLAKKLESKGTK---SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTV  212 (313)
T ss_pred             ccCcccceEEEeC-CCCeEEeccCcccccccccccc---ccccccccCCccccCchhhcCCCcCCccchhhhcCCEE
Confidence            9999999999984 2589999999999988741000   00011245778899999888654 33578999887544

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.40  E-value=2.8e-12  Score=135.13  Aligned_cols=180  Identities=17%  Similarity=0.129  Sum_probs=118.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|+.  +|+.||||+...+...                                   +....+.+|.+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~-----------------------------------~~~~~~~~E~~   51 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITV-----------------------------------ELQKQIMSELE   51 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecCCCh-----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  6899999987543211                                   11112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHP  456 (760)
                      .+.++     +++++.-+.-+.......+++|||++|.++........  .....++..++ ..+..+|..|++|+|++|
T Consensus        52 ~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~qi~-~~l~~lH~~~i~H~dlkp  123 (279)
T cd06619          52 ILYKC-----DSPYIIGFYGAFFVENRISICTEFMDGGSLDVYRKIPE--HVLGRIAVAVV-KGLTYLWSLKILHRDVKP  123 (279)
T ss_pred             HHHhC-----CCCCeeeEEEEEEECCEEEEEEecCCCCChHHhhcCCH--HHHHHHHHHHH-HHHHHHHHCCEeeCCCCH
Confidence            44444     22332222222233456789999999998865432111  01122333333 336789999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .||+++.  ++.++|+|||++..+......        ...+...+++++....+..+...|++++.-.+.+++.
T Consensus       124 ~Nill~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~  188 (279)
T cd06619         124 SNMLVNT--RGQVKLCDFGVSTQLVNSIAK--------TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELAL  188 (279)
T ss_pred             HHEEECC--CCCEEEeeCCcceeccccccc--------CCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHh
Confidence            9999986  889999999999876543221        1234566777777766666778899999887766653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.8e-12  Score=147.52  Aligned_cols=185  Identities=17%  Similarity=0.158  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.||-|-|-.|++  +|+.+|||+..-....                    +             +.....+.+|.-
T Consensus        18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~--------------------s-------------~s~~~~IerEIv   64 (786)
T KOG0588|consen   18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL--------------------S-------------SSQPAGIEREIV   64 (786)
T ss_pred             ccccCCCCceehhhhcccccceeEEEeecccccc--------------------c-------------cccccchhhhhH
Confidence            5799999999999999  7999999986442100                    0             000111233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .|+.+    .| ++|.----.|+-.+..+||.||++|+.|.++.- ...++...+.+....+  ..+..+|..+|.|+|+
T Consensus        65 iMkLi----~H-pnVl~LydVwe~~~~lylvlEyv~gGELFdylv-~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDL  138 (786)
T KOG0588|consen   65 IMKLI----EH-PNVLRLYDVWENKQHLYLVLEYVPGGELFDYLV-RKGPLPEREAAHFFRQILDGVSYCHAFNICHRDL  138 (786)
T ss_pred             HHHHh----cC-CCeeeeeeeeccCceEEEEEEecCCchhHHHHH-hhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccC
Confidence            44433    22 333333334466677899999999999999763 3333333333333222  2255678999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|+|++.  .++|++.||||+.--.+.-   +    +--..|.+.|++++++.-- +-....|+|.-+.++..+|.
T Consensus       139 KpENlLLd~--~~nIKIADFGMAsLe~~gk---l----LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLt  207 (786)
T KOG0588|consen  139 KPENLLLDV--KNNIKIADFGMASLEVPGK---L----LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLT  207 (786)
T ss_pred             Cchhhhhhc--ccCEeeeccceeecccCCc---c----ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHh
Confidence            999999986  5669999999997543321   1    2224578999999987432 33456799999887766553

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.40  E-value=4.1e-12  Score=134.07  Aligned_cols=183  Identities=14%  Similarity=0.133  Sum_probs=114.3

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .||.|++|.||+|..  +|+.||||+..+.....-..                                 ......|...
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~---------------------------------~~~~~~~~~~   47 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQG---------------------------------ETLALNERIM   47 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchh---------------------------------HHHHHHHHHH
Confidence            379999999999998  58999999876531110000                                 0001122222


Q ss_pred             HHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHhCCcccc
Q 004334          378 AELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la---~~lv~~~L~qI~~~GffHa  452 (760)
                      +..++. . +++.+  +..++.  .....++||||++|+.|.+..... ..+....+.   ..++ ..+..+|..|++|+
T Consensus        48 ~~~~~~-~-~~~~i--~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~ql~-~~l~~lH~~~i~H~  121 (278)
T cd05606          48 LSLVST-G-DCPFI--VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-GVFSEAEMRFYAAEII-LGLEHMHNRFVVYR  121 (278)
T ss_pred             HHHHHh-C-CCCcE--eeeeeeeecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHH-HHHHHHHHCCEEcC
Confidence            222221 1 22332  333322  234578999999999998765322 123333322   2222 23678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++.  ++.++|+|||++..+.......        ..+...+++++....+ ..+...|++++...+.+++.
T Consensus       122 di~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~  191 (278)
T cd05606         122 DLKPANILLDE--HGHVRISDLGLACDFSKKKPHA--------SVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR  191 (278)
T ss_pred             CCCHHHEEECC--CCCEEEccCcCccccCccCCcC--------cCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHh
Confidence            99999999985  7899999999987765432211        1345566777776544 35667899999877766553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.40  E-value=1.7e-12  Score=135.19  Aligned_cols=190  Identities=18%  Similarity=0.182  Sum_probs=116.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||+|++|+||+|+.  +|+.|++|+..+..-..                                 .+....+.+|..
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIK---------------------------------EKKVKYVKIEKE   53 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccc---------------------------------hHHHHHHHHHHH
Confidence            5899999999999999  69999999875521000                                 000112233444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +++  .+++++.  ...+..+++|||++|.+|.++.... ..+....+....  +-..+..+|..|++|+
T Consensus        54 ~~~~l~----~~~--~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~  126 (280)
T cd05581          54 VLTRLN----GHP--GIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTRFYAAEILLALEYLHSKGIIHR  126 (280)
T ss_pred             HHHhcc----cCC--CchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeec
Confidence            444332    122  2223222  2235679999999999998865422 123433333322  2233678999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH--------------HHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE--------------AFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~--------------l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      |++|.||+++.  ++.++++|||++..+.......-..              .......+...++.++....+..+...|
T Consensus       127 dl~~~ni~i~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D  204 (280)
T cd05581         127 DLKPENILLDK--DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSD  204 (280)
T ss_pred             CCCHHHeEECC--CCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhh
Confidence            99999999985  8899999999998776543210000              0001112344556666666566666788


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++...+..++
T Consensus       205 i~slG~~l~~l~  216 (280)
T cd05581         205 LWALGCIIYQML  216 (280)
T ss_pred             HHHHHHHHHHHH
Confidence            888876655443

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.39  E-value=1.9e-12  Score=138.60  Aligned_cols=185  Identities=14%  Similarity=0.093  Sum_probs=113.7

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +++.||||+.+......                                   ......+|.
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~E~   55 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG-----------------------------------APCTAIREV   55 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC-----------------------------------cchhHHHHH
Confidence            36799999999999998  58899999876531111                                   000123455


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+...+ ......++||||+++ .+.+.........+...+...  .+-..+..+|..|++|+|
T Consensus        56 ~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~d  129 (309)
T cd07872          56 SLLKDL----KHANIVTLHDIV-HTDKSLTLVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRD  129 (309)
T ss_pred             HHHHhC----CCCCcceEEEEE-eeCCeEEEEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            545444    222223333333 234567999999987 555543222222333332221  222347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++...........      ...+...+++++.... +..+...|++++...+.+++.
T Consensus       130 lkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~t  200 (309)
T cd07872         130 LKPQNLLINE--RGELKLADFGLARAKSVPTKTYS------NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMAS  200 (309)
T ss_pred             CCHHHEEECC--CCCEEECccccceecCCCccccc------cccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence            9999999985  78999999999876543221100      0112345566665543 334566799999877766653

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.39  E-value=4.6e-12  Score=131.40  Aligned_cols=181  Identities=14%  Similarity=0.133  Sum_probs=116.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.+|.|++|.||+|.. .+..+|||+..++....                                     ..+.+|...
T Consensus        10 ~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~-------------------------------------~~~~~e~~~   52 (256)
T cd05059          10 KELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSE-------------------------------------DDFIEEAKV   52 (256)
T ss_pred             hhhccCCCceEEEeEecCCccEEEEEeccCCCCH-------------------------------------HHHHHHHHH
Confidence            5799999999999998 56789999875531110                                     012234343


Q ss_pred             HHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +..+    . +++  +++.+  .......+++|||++|.+|.++........+...+....  +-..+..+|..|++|+|
T Consensus        53 l~~l----~-~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~d  125 (256)
T cd05059          53 MMKL----S-HPN--LVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRD  125 (256)
T ss_pred             HHhC----C-CCC--EEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence            4333    2 233  23333  234456799999999999998764332233433332222  22336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||++++  ++.++++|||++....+.....     .........++++++...+..+...|++++.-.+.+++
T Consensus       126 l~p~ni~i~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~  195 (256)
T cd05059         126 LAARNCLVGE--DNVVKVSDFGLARYVLDDQYTS-----SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVF  195 (256)
T ss_pred             ccHhhEEECC--CCcEEECCcccceecccccccc-----cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHh
Confidence            9999999985  7899999999987664321100     00001123467777777677777889999987766554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.39  E-value=3e-12  Score=132.05  Aligned_cols=117  Identities=16%  Similarity=0.084  Sum_probs=81.6

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCC-------cEEEE
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGG-------RLIFY  472 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g-------~l~Li  472 (760)
                      ...+++|||++|++|.++........+...+...+  +-..+..+|..|++|+|++|.||+++.  ++       .++++
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~--~~~~~~~~~~~kl~  150 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVAR--YGLNEGYVPFIKLS  150 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEec--CccccCCceeEEeC
Confidence            56799999999999998765433234444333222  223468899999999999999999985  44       69999


Q ss_pred             eecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHHH
Q 004334          473 DFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       473 DFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~l  530 (760)
                      |||++..+.....          ......+++++....+  ..+...|++++.-.+.+++
T Consensus       151 Dfg~a~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~  200 (259)
T cd05037         151 DPGIPITVLSREE----------RVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEIC  200 (259)
T ss_pred             CCCcccccccccc----------cccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHH
Confidence            9999887654111          1233445677766554  5566789999887666554

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.39  E-value=1.6e-12  Score=145.35  Aligned_cols=177  Identities=12%  Similarity=0.057  Sum_probs=114.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||+...                                          ..+.+|++
T Consensus        98 ~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------------------------------------------~~~~~E~~  135 (391)
T PHA03212         98 ETFTPGAEGFAFACIDNKTCEHVVIKAGQR------------------------------------------GGTATEAH  135 (391)
T ss_pred             EEEcCCCCeEEEEEEECCCCCEEEEechhh------------------------------------------hhhHHHHH
Confidence            6799999999999998  589999995221                                          01234555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-..+ ......+++||++.| .|.+.... ...+....+....  +-..+..+|..|++|+|+
T Consensus       136 il~~l----~HpnIv~~~~~~-~~~~~~~lv~e~~~~-~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDi  208 (391)
T PHA03212        136 ILRAI----NHPSIIQLKGTF-TYNKFTCLILPRYKT-DLYCYLAA-KRNIAICDILAIERSVLRAIQYLHENRIIHRDI  208 (391)
T ss_pred             HHHhC----CCCCCCCEeEEE-EECCeeEEEEecCCC-CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            55544    222223332222 334567999999975 45544321 1223333332222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++...........     .-..+...++++++...+..++..|++++.-.+.+++.
T Consensus       209 KP~NIll~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  278 (391)
T PHA03212        209 KAENIFINH--PGDVCLGDFGAACFPVDINANKY-----YGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMAT  278 (391)
T ss_pred             ChHhEEEcC--CCCEEEEeCCccccccccccccc-----ccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999985  78999999999865432211111     01235566677777766666778899999988877764

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.39  E-value=5.1e-12  Score=132.78  Aligned_cols=184  Identities=14%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             cccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|+.  +|+    +||||+.+......                                   ....+.
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------~~~~~~   57 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPK-----------------------------------ANKEIL   57 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHH-----------------------------------HHHHHH
Confidence            6899999999999987  454    58999876432111                                   111233


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|...+..+     +++++  ++++. ......+++|||++|+++.+........+....+...+  +-..+..+|..|+
T Consensus        58 ~e~~~l~~~-----~~~~i--~~~~~~~~~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  130 (279)
T cd05109          58 DEAYVMAGV-----GSPYV--CRLLGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRL  130 (279)
T ss_pred             HHHHHHHhc-----CCCCC--ceEEEEEcCCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            444444433     22333  22221 12345689999999999988754322223433333332  2334788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||++.+  ++.++|+|||++..++........    .-......++.++....+..+...|++++.-.+.++
T Consensus       131 iH~dlkp~Nil~~~--~~~~kL~dfG~~~~~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el  204 (279)
T cd05109         131 VHRDLAARNVLVKS--PNHVKITDFGLARLLDIDETEYHA----DGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWEL  204 (279)
T ss_pred             eccccccceEEEcC--CCcEEECCCCceeecccccceeec----CCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHH
Confidence            99999999999975  788999999999877543221000    000123456667776666667778999998766655


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       205 ~  205 (279)
T cd05109         205 M  205 (279)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.39  E-value=3.5e-12  Score=136.00  Aligned_cols=181  Identities=17%  Similarity=0.181  Sum_probs=120.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|.||+|+.  +|+.|++|.........                                    ...+.+|+.
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~------------------------------------~~~~~~e~~   69 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------KELIINEIL   69 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcch------------------------------------HHHHHHHHH
Confidence            5699999999999997  58999999764321110                                    112334444


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+..+     +++++ .+...+ ......++||||++|.+|.++....  ..+...+...+  +-..+..+|..|++|+|
T Consensus        70 ~l~~~-----~h~~v~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~ql~~aL~~LH~~gi~H~d  141 (296)
T cd06654          70 VMREN-----KNPNIVNYLDSY-LVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRD  141 (296)
T ss_pred             HHHhC-----CCCCEeeEEEEE-EeCCEEEEeecccCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCcccCC
Confidence            44433     22322 222222 2345679999999999999875322  23333333322  22346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++++|||+...+.+.....      ....+...++++++...+...+..|++++...+.+++.
T Consensus       142 Lkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~  211 (296)
T cd06654         142 IKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE  211 (296)
T ss_pred             CCHHHEEEcC--CCCEEECccccchhcccccccc------CcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHh
Confidence            9999999985  7899999999988765443211      11234566777887776767788999999887776653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=5e-13  Score=139.23  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             eEEEEeecCCCchhhhhhhh-hc--CCCHHHHHHHHHHHH--HHHHHh--CC--ccccCCCCCcEEEeccCCCcEEEEee
Q 004334          404 QILTMEYVPGIKINRIQSLD-EL--GVDRKRLGRYAVESY--LEQILS--HG--FFHADPHPGNIAVDDVNGGRLIFYDF  474 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~-~~--g~d~~~la~~lv~~~--L~qI~~--~G--ffHaDpHPGNILV~~~~~g~l~LiDF  474 (760)
                      ..||||+|++++|+++...- ..  -+..+.+-...++.+  +..+|.  ..  ++|+|+||+||+++.  +|.++|.||
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~--~gvvKLGDf  172 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTA--NGVVKLGDF  172 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcC--CCceeeccc
Confidence            47999999999999976422 11  122233322222222  344454  33  999999999999986  899999999


Q ss_pred             cceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          475 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       475 G~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      |+.+.++.+..      +.+-..+++.+|.++.+.-.-..+..|+++++=.++++
T Consensus       173 GL~r~l~s~~t------fA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEM  221 (375)
T KOG0591|consen  173 GLGRFLSSKTT------FAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEM  221 (375)
T ss_pred             hhHhHhcchhH------HHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHH
Confidence            99999987643      33445689999999998877778899999998766654

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.38  E-value=4.5e-12  Score=138.36  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=60.2

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      .+..+|..|++|+|++|.||+++.  ++.++++|||++..+......  ..  .........+++++....+..+...|+
T Consensus       191 al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~--~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di  264 (343)
T cd05103         191 GMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDY--VR--KGDARLPLKWMAPETIFDRVYTIQSDV  264 (343)
T ss_pred             HHHHHHhCCeecCCCccCeEEEcC--CCcEEEEecccccccccCcch--hh--cCCCCCCcceECcHHhcCCCCCchhhH
Confidence            367789999999999999999985  789999999998876432110  00  011122344667777666666778899


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++...+.+++
T Consensus       265 ~slG~~l~el~  275 (343)
T cd05103         265 WSFGVLLWEIF  275 (343)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.38  E-value=9.5e-12  Score=129.29  Aligned_cols=186  Identities=12%  Similarity=0.055  Sum_probs=117.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||..++-....                                 .+....+.+|..
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------------~~~~~~~~~e~~   54 (267)
T cd08228           8 KKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMD---------------------------------AKARQDCVKEID   54 (267)
T ss_pred             eeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCC---------------------------------HHHHHHHHHHHH
Confidence            5799999999999998  68999999765410000                                 011122344554


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+..+    .+..-+.+...+ ......+++|||++|++|.++....   ....+...+....  +-..+..+|..|++|
T Consensus        55 ~l~~l----~h~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H  129 (267)
T cd08228          55 LLKQL----NHPNVIKYLDSF-IEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMH  129 (267)
T ss_pred             HHHhC----CCcceeeeeeeE-EECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeC
Confidence            44444    222222222222 2235679999999999998865321   1112333322222  223467789999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||+++.  ++.++++|||++..+......      .....+...+++++.......+...|++++...+.+++
T Consensus       130 ~dl~~~nil~~~--~~~~~l~d~g~~~~~~~~~~~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~  200 (267)
T cd08228         130 RDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMA  200 (267)
T ss_pred             CCCCHHHEEEcC--CCCEEECccccceeccchhHH------HhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHh
Confidence            999999999985  789999999998887654321      11123555667777665555566789999887666554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.38  E-value=4.5e-12  Score=131.75  Aligned_cols=181  Identities=14%  Similarity=0.123  Sum_probs=117.5

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ..||.|++|+||+|.+ .+..||+|+.+++-..                                     ...+.+|.+.
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~-------------------------------------~~~~~~E~~~   54 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM-------------------------------------PEAFLQEAQI   54 (260)
T ss_pred             eeecCcCCCeEEEEEEcCCceEEEEEcccCCcc-------------------------------------HHHHHHHHHH
Confidence            4799999999999998 4567999987663110                                     0123345444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHH---HHHHHHHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKR---LGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~---la~~lv~~~L~qI~~~GffHaD  453 (760)
                      +.++    .+...+.+...+  .....+++|||++|++|.++..... ...+...   ++..++ ..+..+|..|++|+|
T Consensus        55 l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~-~al~~lH~~~i~H~d  127 (260)
T cd05069          55 MKKL----RHDKLVPLYAVV--SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIA-DGMAYIERMNYIHRD  127 (260)
T ss_pred             HHhC----CCCCeeeEEEEE--cCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHH-HHHHHHHhCCEeecc
Confidence            4443    233333333333  2345799999999999988764321 1123322   223333 346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|+||++++  ++.++|+|||.+..+........     ........+++++....+..+...|++++.-.+.+++
T Consensus       128 l~~~Nill~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~  197 (260)
T cd05069         128 LRAANILVGD--NLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELV  197 (260)
T ss_pred             cCcceEEEcC--CCeEEECCCccceEccCCccccc-----CCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHH
Confidence            9999999986  78999999999987654321110     0011234466677766666777789999987776654

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.38  E-value=3.7e-12  Score=132.77  Aligned_cols=194  Identities=14%  Similarity=0.173  Sum_probs=119.6

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      +++..|...  +.+|.|++|+||+|..  +++.||||+....-..                                   
T Consensus         3 ~~~~~y~~~--~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-----------------------------------   45 (272)
T cd06637           3 DPAGIFELV--ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE-----------------------------------   45 (272)
T ss_pred             ChhhhhhHH--HheeecCCeEEEEEEEcCCCcEEEEEEEEcCCcc-----------------------------------
Confidence            344555432  5799999999999998  5899999986432100                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--H
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--V  437 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v  437 (760)
                        ...+.+|...+.++.   .+..-+.+...+...     ....+++|||++|++|.++..... ..+....+....  +
T Consensus        46 --~~~~~~e~~~l~~~~---~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi  120 (272)
T cd06637          46 --EEEIKQEINMLKKYS---HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI  120 (272)
T ss_pred             --HHHHHHHHHHHHHhc---CCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHH
Confidence              011223333333331   112223333333221     234689999999999998754322 223333322222  2


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CC
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GV  512 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~  512 (760)
                      -..+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......      ....+...++++++...     +.
T Consensus       121 ~~~l~~LH~~~ivh~dl~~~nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~  192 (272)
T cd06637         121 LRGLSHLHQHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIACDENPDAT  192 (272)
T ss_pred             HHHHHHHHHCCCccCCCCHHHEEECC--CCCEEEccCCCceecccccccC------CcccccccccCHhHhccccCcCCC
Confidence            23468899999999999999999986  7899999999988765432211      11224455667776642     23


Q ss_pred             CCCCCChHHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l~  531 (760)
                      .+...|++++...+.+++.
T Consensus       193 ~~~~~Dv~slGv~l~el~~  211 (272)
T cd06637         193 YDFKSDLWSLGITAIEMAE  211 (272)
T ss_pred             CCchhhHHHHHHHHHHHHh
Confidence            4556899999877766653

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.38  E-value=5.3e-12  Score=141.66  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=61.8

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|++|.||++++  ++.++|+|||++..+........    .....+...+++++....+..++..|
T Consensus       248 ~aL~~LH~~~ivH~dikp~Nill~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  321 (400)
T cd05105         248 RGMEFLASKNCVHRDLAARNVLLAQ--GKIVKICDFGLARDIMHDSNYVS----KGSTFLPVKWMAPESIFDNLYTTLSD  321 (400)
T ss_pred             HHHHHHHhCCeeCCCCChHhEEEeC--CCEEEEEeCCcceeccccccccc----cCCcCCCcceEChhhhcCCCCCchhh
Confidence            3467899999999999999999986  78899999999887643321100    00011223467777776666778899


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++...+.+++
T Consensus       322 iwSlGvil~ell  333 (400)
T cd05105         322 VWSYGILLWEIF  333 (400)
T ss_pred             HHHHHHHHHHHH
Confidence            999987776654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.38  E-value=4.1e-12  Score=131.44  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=116.7

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.+|.|++|+||++..+|+.||+|+.+....                                      ...+.+|...+
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~--------------------------------------~~~~~~e~~~l   53 (254)
T cd05083          12 EIIGEGEFGAVLQGEYTGQKVAVKNIKCDVT--------------------------------------AQAFLEETAVM   53 (254)
T ss_pred             eeeccCCCCceEecccCCCceEEEeecCcch--------------------------------------HHHHHHHHHHH
Confidence            6799999999999998999999998654210                                      01233444444


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHH---HHHHHHHHHHHHHhCCccccCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRL---GRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~l---a~~lv~~~L~qI~~~GffHaDp  454 (760)
                      .++    .+...+.+...+.  ....+++|||++|++|.++...... ..+...+   +..++ ..+..+|..|++|+|+
T Consensus        54 ~~~----~~~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~-~al~~lH~~~~~H~dl  126 (254)
T cd05083          54 TKL----HHKNLVRLLGVIL--HNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVA-EGMEYLESKKLVHRDL  126 (254)
T ss_pred             HhC----CCCCcCeEEEEEc--CCCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHH-HHHHHHHhCCeecccc
Confidence            433    2222333333332  3456999999999999987643321 2333333   22333 3367899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+++.  ++.++|+|||.+.........         ......+++++....+..+...|++++.-.+.+++
T Consensus       127 ~p~nili~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~  191 (254)
T cd05083         127 AARNILVSE--DGVAKVSDFGLARVGSMGVDN---------SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVF  191 (254)
T ss_pred             CcceEEEcC--CCcEEECCCccceeccccCCC---------CCCCceecCHHHhccCCcCchhhHHHHHHHHHHHH
Confidence            999999985  789999999998765432110         11123456666666666777889999987776655

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=3.8e-12  Score=136.29  Aligned_cols=190  Identities=17%  Similarity=0.167  Sum_probs=120.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||...+.....                                 ......+..|..
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   53 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK---------------------------------RNKVKRVLTEQE   53 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccch---------------------------------HHHHHHHHHHHH
Confidence            5799999999999999  48999999876531110                                 011122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++.     ++  .+++++.  ......+++|||++|.+|.++..... ..++.......+  +-..+..+|..|++|
T Consensus        54 ~l~~l~-----~~--~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H  126 (316)
T cd05574          54 ILATLD-----HP--FLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVY  126 (316)
T ss_pred             HHHhCC-----CC--CchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            555442     22  2334333  33456799999999999998754221 223333332222  223467899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH----------------HHH-------HHhhcCHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFY-------GIYEKDADKVLQAMV  508 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~----------------l~~-------al~~~D~~~v~~~l~  508 (760)
                      +|+||.||+++.  ++.++|.|||++...+.........                ...       ....++..++++++.
T Consensus       127 ~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  204 (316)
T cd05574         127 RDLKPENILLHE--SGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVI  204 (316)
T ss_pred             cCCChHHeEEcC--CCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHH
Confidence            999999999986  7899999999987765432111000                000       001234456777777


Q ss_pred             HcCCCCCCCChHHHHHHHHHHH
Q 004334          509 QMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       509 ~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      .-+..+...|++++...+.+++
T Consensus       205 ~~~~~~~~~Di~slG~ll~~l~  226 (316)
T cd05574         205 SGDGHGSAVDWWTLGILLYEML  226 (316)
T ss_pred             cCCCCCchHHHHHHHHHHHHHh
Confidence            6666677789999988776654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.38  E-value=7.3e-12  Score=130.35  Aligned_cols=182  Identities=23%  Similarity=0.235  Sum_probs=115.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||+|+.+.......                                    ..+.+|+.
T Consensus        15 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~------------------------------------~~~~~e~~   58 (267)
T cd06646          15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDF------------------------------------SLIQQEIF   58 (267)
T ss_pred             heeecCCCeEEEEEEECCCCeEEEEEEEecCccchH------------------------------------HHHHHHHH
Confidence            6799999999999998  689999999865321110                                    11234554


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la---~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+..-+.+...+ ......++||||++|++|.++.... ...+...+.   ..++ ..+..+|..|++|+|
T Consensus        59 ~l~~~----~h~~ii~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~-~~l~~lH~~~i~H~d  131 (267)
T cd06646          59 MVKEC----KHCNIVAYFGSY-LSREKLWICMEYCGGGSLQDIYHVT-GPLSELQIAYVCRETL-QGLAYLHSKGKMHRD  131 (267)
T ss_pred             HHHhc----CCCCeeeeeEEE-EeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHH-HHHHHHHHCCccccC
Confidence            44443    222222222222 2235678999999999998865322 223333322   2223 346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|+||+++.  ++.++++|||++..+.......      ....+...+++++...   .+..+...|++++.-.+.+++
T Consensus       132 l~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~  203 (267)
T cd06646         132 IKGANILLTD--NGDVKLADFGVAAKITATIAKR------KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             CCHHHEEECC--CCCEEECcCccceeeccccccc------CccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHH
Confidence            9999999985  7889999999998775332110      0012344566666652   233455689999987766654


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       204 ~  204 (267)
T cd06646         204 E  204 (267)
T ss_pred             h
Confidence            3

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=9.7e-12  Score=128.91  Aligned_cols=182  Identities=20%  Similarity=0.186  Sum_probs=113.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|.|++|+||+|+.  +|+.||||+.+......                                .... ..+..|..
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~--------------------------------~~~~-~~~~~e~~   48 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA--------------------------------KNQV-TNVKAERA   48 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH--------------------------------HHHH-HHHHHHHH
Confidence            4799999999999998  58999999865320000                                0000 01111211


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.   ....+...+.+...+ +.....+++|||++|++|.++.... ...+...+...+  +-..+..+|..|++|+|+
T Consensus        49 ~~~---~~~~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl  123 (260)
T cd05611          49 IMM---IQGESPYVAKLYYSF-QSKDYLYLVMEYLNGGDCASLIKTL-GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDI  123 (260)
T ss_pred             HHh---hcCCCCCeeeeeeeE-EcCCeEEEEEeccCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            111   111222223333222 2235679999999999999875322 123333332222  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||+++.  ++.++|+|||+.......          ....++..+++++....+......|++++...+.+++
T Consensus       124 ~p~nil~~~--~~~~~l~dfg~~~~~~~~----------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~  187 (260)
T cd05611         124 KPENLLIDQ--TGHLKLTDFGLSRNGLEN----------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFL  187 (260)
T ss_pred             CHHHeEECC--CCcEEEeecccceecccc----------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHH
Confidence            999999985  789999999988765431          1123455566777666555567789999987776654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.38  E-value=5e-12  Score=133.10  Aligned_cols=183  Identities=14%  Similarity=0.124  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|+||+|+.      .++.|++|..++....                                   +....+.
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~-----------------------------------~~~~~~~   55 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNP-----------------------------------QQWGEFQ   55 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCH-----------------------------------HHHHHHH
Confidence            5799999999999985      3578999976542110                                   0111234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc----------------CCCHHH---
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----------------GVDRKR---  431 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~----------------g~d~~~---  431 (760)
                      +|+..+.++.    + ++  +++++.  ......+++|||++|++|.++......                .++...   
T Consensus        56 ~E~~~l~~l~----h-~n--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (283)
T cd05090          56 QEASLMAELH----H-PN--IVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLH  128 (283)
T ss_pred             HHHHHHhhCC----C-CC--eeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHH
Confidence            4555555442    2 22  233332  234567999999999999887532211                122222   


Q ss_pred             HHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004334          432 LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  511 (760)
Q Consensus       432 la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG  511 (760)
                      ++..++ ..+..+|..|++|+|++|.||++++  ++.++|.|||++..+........    ......+..+++++....+
T Consensus       129 i~~~i~-~al~~lH~~~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~  201 (283)
T cd05090         129 IAIQIA-AGMEYLSSHFFVHKDLAARNILIGE--QLHVKISDLGLSREIYSADYYRV----QPKSLLPIRWMPPEAIMYG  201 (283)
T ss_pred             HHHHHH-HHHHHHHhcCeehhccccceEEEcC--CCcEEeccccccccccCCcceec----ccCCCccceecChHHhccC
Confidence            222233 3478899999999999999999985  78899999999987644321110    0111123456777777666


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 004334          512 VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       512 ~~~~~~D~~al~~~~~~~l  530 (760)
                      ..++..|++++.-.+.+++
T Consensus       202 ~~~~~~Dv~slG~il~el~  220 (283)
T cd05090         202 KFSSDSDIWSFGVVLWEIF  220 (283)
T ss_pred             CCCchhhhHHHHHHHHHHH
Confidence            6778899999987776655

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.38  E-value=3.8e-12  Score=136.79  Aligned_cols=185  Identities=13%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             ccccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .+.||+|++|+||+|++  +|+    .||||+.++.....                                   ....+
T Consensus        12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~   56 (316)
T cd05108          12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------ANKEI   56 (316)
T ss_pred             eeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHH-----------------------------------HHHHH
Confidence            36899999999999987  444    48999876521111                                   11123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      .+|+..+..+    .+ ++  +.+.+. ......+++|||++++++.+.........+...+....  +...+..+|..|
T Consensus        57 ~~e~~~l~~l----~h-~n--iv~~~g~~~~~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~  129 (316)
T cd05108          57 LDEAYVMASV----DN-PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERR  129 (316)
T ss_pred             HHHHHHHHhC----CC-CC--CCeEEEEEcCCCceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455444443    22 22  223332 12345689999999999988754333233443333322  223478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......-.    ........+++++....+..+...|++++.-.+.+
T Consensus       130 iiH~dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~e  203 (316)
T cd05108         130 LVHRDLAARNVLVKT--PQHVKITDFGLAKLLGADEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE  203 (316)
T ss_pred             eeccccchhheEecC--CCcEEEccccccccccCCCcceec----cCCccceeecChHHhccCCCCchhhhHHHHHHHHH
Confidence            999999999999985  789999999999887643321100    00011234667777666667778899999877766


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       204 l~  205 (316)
T cd05108         204 LM  205 (316)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.38  E-value=4.6e-12  Score=131.21  Aligned_cols=183  Identities=14%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|+.  +|+.|++|+........                                 ....+.+.+|.+
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~~~~~~~e~~   52 (258)
T cd05578           6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE---------------------------------KGSVRNVLNERR   52 (258)
T ss_pred             EEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc---------------------------------hhHHHHHHHHHH
Confidence            6899999999999999  48999999875421000                                 000112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHa  452 (760)
                      .++++     ++++  +++++.  ......+++|||++|.+|.+..... ...+...+...+.  -..+..+|..|++|+
T Consensus        53 ~l~~l-----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~  124 (258)
T cd05578          53 ILQEL-----NHPF--LVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHSKGIIHR  124 (258)
T ss_pred             HHHhC-----CCCC--hHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            44443     1222  222221  2234579999999999998865433 2344444333322  233778899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++.  ++.++|+|||....+.....       .....++..+++++.......+...|++++...+.+++.
T Consensus       125 dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~  194 (258)
T cd05578         125 DIKPDNILLDE--QGHVHITDFNIATKVTPDTL-------TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLR  194 (258)
T ss_pred             CCCHHHeEEcC--CCCEEEeecccccccCCCcc-------ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHh
Confidence            99999999986  88999999999887765431       111235666777887766666778899999877766553

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.38  E-value=5.1e-12  Score=130.00  Aligned_cols=188  Identities=18%  Similarity=0.113  Sum_probs=117.9

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.|++|+....-....                               ..+..+.+.+|.
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~-------------------------------~~~~~~~~~~e~   53 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQT-------------------------------GQEAVKQLEQEI   53 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEcccccc-------------------------------chHHHHHHHHHH
Confidence            36799999999999998  589999998754211100                               011112234454


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .-+..+    .+..-+.+.... ......+++|||++|.+|.++..... ..+...+...+  +-..+..+|..|++|+|
T Consensus        54 ~~l~~~----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~d  127 (258)
T cd06632          54 ALLSKL----QHPNIVQYLGTE-REEDNLYIFLELVPGGSLAKLLKKYG-SFPEPVIRLYTRQILLGLEYLHDRNTVHRD  127 (258)
T ss_pred             HHHHhc----CCCCchheeeeE-ecCCeEEEEEEecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCC
Confidence            444443    222222222222 23356799999999999988753221 13333322221  22346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||+++.  ++.++|+|||+...+.....       .....++..++.++....+. .+...|++++...+.+++.
T Consensus       128 l~~~ni~~~~--~~~~kl~d~~~~~~~~~~~~-------~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~  197 (258)
T cd06632         128 IKGANILVDT--NGVVKLADFGMAKQVVEFSF-------AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMAT  197 (258)
T ss_pred             CCHHHEEECC--CCCEEEccCccceecccccc-------ccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHh
Confidence            9999999985  78999999999887654431       01122445566666665444 5667899998877665543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.38  E-value=6.5e-12  Score=130.75  Aligned_cols=182  Identities=21%  Similarity=0.206  Sum_probs=116.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||+|+.+.......                                    ..+.+|..
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~------------------------------------~~~~~e~~   58 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDF------------------------------------AVVQQEII   58 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHH------------------------------------HHHHHHHH
Confidence            5799999999999998  589999999765321110                                    01223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+...+ ......+++|||++|++|.++.... ...+...+.....  -..+..+|..|++|+|+
T Consensus        59 ~~~~l----~h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  132 (267)
T cd06645          59 MMKDC----KHSNIVAYFGSY-LRRDKLWICMEFCGGGSLQDIYHVT-GPLSESQIAYVSRETLQGLYYLHSKGKMHRDI  132 (267)
T ss_pred             HHHhC----CCCCeeeEEEEE-EeCCEEEEEEeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            33322    222223333322 2345679999999999999865322 1234333333222  23367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||+++.  ++.++|+|||++..+.......      ....++..+++++...   .+......|++++.-.+.+++
T Consensus       133 kp~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~  203 (267)
T cd06645         133 KGANILLTD--NGHVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             CHHHEEECC--CCCEEECcceeeeEccCccccc------ccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHh
Confidence            999999985  7899999999988765332110      0112455667777653   344566789999987665543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.38  E-value=7.8e-12  Score=129.75  Aligned_cols=182  Identities=16%  Similarity=0.147  Sum_probs=119.3

Q ss_pred             cccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|.||+|+..  |+.|+||+..+.....                                 .+....+.+|...+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------------~~~~~~~~~e~~~l   47 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE---------------------------------TGQQEHIFSEKEIL   47 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchh---------------------------------hhHHHHHHHHHHHH
Confidence            688999999999994  8999999876521000                                 01122345565555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHP  456 (760)
                      .++    .+..-+.+...+ ......+++|||++|++|.++..... ......+...+  +-..++.+|..|++|+|++|
T Consensus        48 ~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~  121 (262)
T cd05572          48 EEC----NHPFIVKLYRTF-KDKKYIYMLMEYCLGGELWTILRDRG-LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKP  121 (262)
T ss_pred             HhC----CCCCEeeeeeeE-EcCCccEEEEecCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCH
Confidence            444    222222222222 33456799999999999988653221 23333332222  23347889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      .||+++.  ++.++|+|||.+..+......       ....++..++.++.......+...|++++.-.+.+++
T Consensus       122 ~nilv~~--~~~~~l~df~~~~~~~~~~~~-------~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~  186 (262)
T cd05572         122 ENLLLDS--NGYVKLVDFGFAKKLKSGQKT-------WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELL  186 (262)
T ss_pred             HHEEEcC--CCCEEEeeCCcccccCccccc-------ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHH
Confidence            9999985  889999999999888665311       0112455667777766555667789999987766654

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.37  E-value=2.2e-12  Score=147.35  Aligned_cols=178  Identities=13%  Similarity=0.034  Sum_probs=116.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||+|++  .++.||||.....                                          ...+|++
T Consensus       175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~------------------------------------------~~~~E~~  212 (461)
T PHA03211        175 RALTPGSEGCVFESSHPDYPQRVVVKAGWYA------------------------------------------SSVHEAR  212 (461)
T ss_pred             EEEccCCCeEEEEEEECCCCCEEEEeccccc------------------------------------------CHHHHHH
Confidence            5799999999999999  4899999942110                                          0124555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-.++ ......+|+||++.| .+.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus       213 iL~~L----~HpnIv~l~~~~-~~~~~~~lv~e~~~~-~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDL  286 (461)
T PHA03211        213 LLRRL----SHPAVLALLDVR-VVGGLTCLVLPKYRS-DLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDI  286 (461)
T ss_pred             HHHHC----CCCCCCcEEEEE-EECCEEEEEEEccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcC
Confidence            55554    222222222222 334567999999976 55554322222344444333322  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+........    .....+...++++++..-+..+...|++++...+.+++
T Consensus       287 KP~NILl~~--~~~vkL~DFGla~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~  356 (461)
T PHA03211        287 KTENVLVNG--PEDICLGDFGAACFARGSWSTPF----HYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAA  356 (461)
T ss_pred             CHHHEEECC--CCCEEEcccCCceeccccccccc----ccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHH
Confidence            999999985  78999999999887654321111    11124667788888887666777889999998877664

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.37  E-value=5.1e-12  Score=134.17  Aligned_cols=185  Identities=19%  Similarity=0.193  Sum_probs=117.8

Q ss_pred             cccccccccEEEEEEEC--------------C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          299 EPIAAASLGQVHRARLK--------------G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--------------G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      +.||.|++|.||+|+..              |  ..||||+.+++....                               
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~-------------------------------   59 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT-------------------------------   59 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHH-------------------------------
Confidence            57999999999999862              1  258999988753221                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc-----------CCCH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL-----------GVDR  429 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~-----------g~d~  429 (760)
                          ....+.+|.+.+.++.    + ++  +++++.  ......+++|||++|.+|.++......           ..+.
T Consensus        60 ----~~~~~~~ei~~l~~l~----h-~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  128 (295)
T cd05097          60 ----ARNDFLKEIKIMSRLK----N-PN--IIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSI  128 (295)
T ss_pred             ----HHHHHHHHHHHHHhCC----C-CC--cCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccH
Confidence                1112345555555542    2 22  333332  234567999999999999987532210           1222


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004334          430 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  507 (760)
Q Consensus       430 ~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l  507 (760)
                      ..+...+  +...+..+|..|++|+|+||+||++++  ++.++|+|||++..+.......    ..+.......+++++.
T Consensus       129 ~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~  202 (295)
T cd05097         129 ANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN--HYTIKIADFGMSRNLYSGDYYR----IQGRAVLPIRWMAWES  202 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC--CCcEEecccccccccccCccee----ccCcCcCceeecChhh
Confidence            2222222  223367889999999999999999985  7899999999987664322100    0011112345667777


Q ss_pred             HHcCCCCCCCChHHHHHHHHHHHH
Q 004334          508 VQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       508 ~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ...+..+...|++++.-.+.+++.
T Consensus       203 ~~~~~~~~~~DvwSlG~~l~el~~  226 (295)
T cd05097         203 ILLGKFTTASDVWAFGVTLWEMFT  226 (295)
T ss_pred             hccCCcCchhhHHHHHHHHHHHHH
Confidence            666777888999999887766653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.37  E-value=1.9e-12  Score=144.51  Aligned_cols=175  Identities=15%  Similarity=0.171  Sum_probs=126.3

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +=+|+|+-|.|++|++.++.||||-.+    +.-+.|                                       .+++
T Consensus       130 eWlGSGaQGAVF~Grl~netVAVKKV~----elkETd---------------------------------------IKHL  166 (904)
T KOG4721|consen  130 EWLGSGAQGAVFLGRLHNETVAVKKVR----ELKETD---------------------------------------IKHL  166 (904)
T ss_pred             hhhccCcccceeeeeccCceehhHHHh----hhhhhh---------------------------------------HHHH
Confidence            459999999999999999999999422    222223                                       2333


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpHP  456 (760)
                      +++    ++.+.|.+-.|.. -+--.+++||||.-+.|..++...+ .+.+..++..  .+..-++++|.|.++|+|+|.
T Consensus       167 RkL----kH~NII~FkGVCt-qsPcyCIiMEfCa~GqL~~VLka~~-~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKS  240 (904)
T KOG4721|consen  167 RKL----KHPNIITFKGVCT-QSPCYCIIMEFCAQGQLYEVLKAGR-PITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKS  240 (904)
T ss_pred             Hhc----cCcceeeEeeeec-CCceeEEeeeccccccHHHHHhccC-ccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCC
Confidence            333    2222233322221 1122489999999999998765332 3566666654  344558889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      -||||..  +..+++.|||-...+++...    .+   -+.++...|++++++..-..+.+|+++|...+-++|.
T Consensus       241 PNiLIs~--~d~VKIsDFGTS~e~~~~ST----kM---SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT  306 (904)
T KOG4721|consen  241 PNILISY--DDVVKISDFGTSKELSDKST----KM---SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLT  306 (904)
T ss_pred             CceEeec--cceEEeccccchHhhhhhhh----hh---hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHh
Confidence            9999986  77899999999988876521    11   1357889999999999999999999999988766654

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.37  E-value=1.1e-11  Score=132.74  Aligned_cols=182  Identities=15%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             cccccccccEEEEEEE--CCeeE--EEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~V--AVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|+||+|++  +|..+  ++|.......+                                   .....+.+|
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~-----------------------------------~~~~~~~~E   57 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK-----------------------------------DDHRDFAGE   57 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCH-----------------------------------HHHHHHHHH
Confidence            6799999999999998  46554  55543331111                                   111223445


Q ss_pred             HHHHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH-
Q 004334          375 AANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA-  436 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l-  436 (760)
                      ...+.++.    ++++  +++++  .......+++|||++|++|.++.....               ..++...+...+ 
T Consensus        58 i~~l~~l~----~h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (303)
T cd05088          58 LEVLCKLG----HHPN--IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA  131 (303)
T ss_pred             HHHHHHhc----CCCC--cceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHH
Confidence            55555442    2332  33333  234456799999999999988653221               112333332222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          437 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       437 -v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                       +-..+..+|..|++|+|++|.||+++.  ++.++|+|||++..........       .......+++++.......++
T Consensus       132 qi~~al~~LH~~gi~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~  202 (303)
T cd05088         132 DVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLNYSVYTT  202 (303)
T ss_pred             HHHHHHHHHHhCCccccccchheEEecC--CCcEEeCccccCcccchhhhcc-------cCCCcccccCHHHHhccCCcc
Confidence             223468899999999999999999985  7899999999886432111100       001123456677666666677


Q ss_pred             CCChHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFL  530 (760)
Q Consensus       516 ~~D~~al~~~~~~~l  530 (760)
                      ..|+++++-.+.+++
T Consensus       203 ~~Di~slG~il~ell  217 (303)
T cd05088         203 NSDVWSYGVLLWEIV  217 (303)
T ss_pred             cccchhhhhHHHHHH
Confidence            899999988777665

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.37  E-value=5.8e-12  Score=137.51  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=63.9

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    -.........+++++...-+..++..|
T Consensus       184 ~aL~~lH~~~ivHrDikp~Nill~~--~~~vkL~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~D  257 (337)
T cd05054         184 RGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPESIFDKVYTTQSD  257 (337)
T ss_pred             HHHHHHHhCCeecCCCCcceEEEeC--CCcEEEeccccchhcccCcchh----hccCCCCCccccCcHHhcCCCCCcccc
Confidence            3478899999999999999999986  7899999999998875432110    011122234577788777777788899


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++.-.+.+++
T Consensus       258 i~SlGv~l~el~  269 (337)
T cd05054         258 VWSFGVLLWEIF  269 (337)
T ss_pred             HHHHHHHHHHHH
Confidence            999988776654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.37  E-value=7.5e-12  Score=130.14  Aligned_cols=181  Identities=14%  Similarity=0.112  Sum_probs=116.5

Q ss_pred             cccccccccEEEEEEEC-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.+|.|++|.||.|... +..||||..+++-..                                     ...+.+|...
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~-------------------------------------~~~~~~e~~~   52 (256)
T cd05113          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------EDEFIEEAKV   52 (256)
T ss_pred             eEecCcccceEEEEEecCCCcEEEEEcCCCccc-------------------------------------HHHHHHHHHH
Confidence            46999999999999984 557999976542110                                     0112345444


Q ss_pred             HHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      +.++    . ++  .+++.+..  .....+++|||++|++|.++........+...+.....  -..+..+|..|++|+|
T Consensus        53 l~~l----~-h~--~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~d  125 (256)
T cd05113          53 MMKL----S-HE--KLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRD  125 (256)
T ss_pred             HhcC----C-CC--CeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccc
Confidence            4443    2 22  23444432  23456999999999999887543222344444333322  2336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||+||++++  ++.++++|||....+....-...     ........+..++....+......|++++.-.+.+++
T Consensus       126 l~p~nili~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~  195 (256)
T cd05113         126 LAARNCLVDD--QGCVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVY  195 (256)
T ss_pred             cCcceEEEcC--CCCEEECCCccceecCCCceeec-----CCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHh
Confidence            9999999985  78999999999876643211000     0011234456677776666677889999987766554

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.37  E-value=7.9e-12  Score=130.45  Aligned_cols=182  Identities=15%  Similarity=0.127  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.+|.|++|.||+|++ ++..||||+.++....                                     ...+.+|...
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~-------------------------------------~~~~~~E~~~   54 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------PEAFLQEAQV   54 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEecccCccC-------------------------------------HHHHHHHHHH
Confidence            4699999999999998 4567999987652110                                     0123345555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++.    +..-+.+...+  .....+++|||++|++|.++..... ...+...+....  +-..+..+|..|++|+|+
T Consensus        55 l~~l~----~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl  128 (262)
T cd05071          55 MKKLR----HEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL  128 (262)
T ss_pred             HHhCC----CCCcceEEEEE--CCCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCcccccc
Confidence            55542    22222222222  2345699999999999988764321 123333332222  223367899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||++++  ++.++|+|||.+..++.......     ....++..++.++....+..+...|++++...+.+++
T Consensus       129 ~p~Nill~~--~~~~~L~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ell  197 (262)
T cd05071         129 RAANILVGE--NLVCKVADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELT  197 (262)
T ss_pred             CcccEEEcC--CCcEEeccCCceeeccccccccc-----cCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHH
Confidence            999999986  78999999999987764432110     0112344567777776666777889999988776654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.37  E-value=1.7e-12  Score=140.34  Aligned_cols=183  Identities=19%  Similarity=0.225  Sum_probs=123.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|.+|.|-+|+.  .|+.||||..+.+--+.                         ..|++.        +++|.+
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd-------------------------eqDlvh--------IRREIe  105 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD-------------------------EQDLVH--------IRREIE  105 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhccc-------------------------HHHHHH--------HHHHHH
Confidence            4799999999999998  59999999766531111                         123333        345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH---HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l---v~~~L~qI~~~GffHaD  453 (760)
                      .|..+    .+...+.|..|+ +..++.||||||..|+.|.|+..-... +. .+-++..   +-..+++.|.++++|+|
T Consensus       106 IMSsL----NHPhII~IyEVF-ENkdKIvivMEYaS~GeLYDYiSer~~-Ls-ErEaRhfFRQIvSAVhYCHknrVvHRD  178 (668)
T KOG0611|consen  106 IMSSL----NHPHIIQIYEVF-ENKDKIVIVMEYASGGELYDYISERGS-LS-EREARHFFRQIVSAVHYCHKNRVVHRD  178 (668)
T ss_pred             HHhhc----CCCceeehhhhh-cCCceEEEEEEecCCccHHHHHHHhcc-cc-HHHHHHHHHHHHHHHHHHhhccceecc
Confidence            55544    222334555555 567788999999999999998753321 11 1122222   22335667899999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l  530 (760)
                      +|-.|||++.  ++.+++.|||+.-.+.+.   .|++.|.    +.+-++.++++.- -+..|.+|-+++...++-++
T Consensus       179 LKLENILLD~--N~NiKIADFGLSNly~~~---kfLqTFC----GSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLV  247 (668)
T KOG0611|consen  179 LKLENILLDQ--NNNIKIADFGLSNLYADK---KFLQTFC----GSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLV  247 (668)
T ss_pred             cchhheeecC--CCCeeeeccchhhhhccc---cHHHHhc----CCcccCCccccCCCCCCCCccchhhHHHHHHHHh
Confidence            9999999986  889999999998877543   3444444    4566666666543 24567889999987665544

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.37  E-value=3.1e-12  Score=136.27  Aligned_cols=182  Identities=16%  Similarity=0.193  Sum_probs=115.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||++..  +|+.||||...-....                                    ....+.+|..
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~------------------------------------~~~~~~~e~~   71 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQ------------------------------------RRELLFNEVV   71 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHH------------------------------------HHHHHHHHHH
Confidence            4699999999999998  5899999975321100                                    0111233433


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+...+ ......+++|||++|.++.++....  ..+...+....  +-..+..+|..|++|+|+
T Consensus        72 ~l~~l----~h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dl  144 (292)
T cd06658          72 IMRDY----HHENVVDMYNSY-LVGDELWVVMEFLEGGALTDIVTHT--RMNEEQIATVCLSVLRALSYLHNQGVIHRDI  144 (292)
T ss_pred             HHHhC----CCCcHHHHHHhe-ecCCeEEEEEeCCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeecCC
Confidence            33332    111112222222 2235679999999999998865322  23333333322  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||++..+.......      ....+...++++++..-...+...|++++...+.+++.
T Consensus       145 kp~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~  213 (292)
T cd06658         145 KSDSILLTS--DGRIKLSDFGFCAQVSKEVPKR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID  213 (292)
T ss_pred             CHHHEEEcC--CCCEEEccCcchhhcccccccC------ceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHh
Confidence            999999985  7899999999987654432211      01124556777777765566777899999877766543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.37  E-value=6.5e-12  Score=129.82  Aligned_cols=185  Identities=15%  Similarity=0.096  Sum_probs=119.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||++..  +|+.||+|..+-.....                                   ....+.+|..
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~-----------------------------------~~~~~~~e~~   50 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSS-----------------------------------AVEDSRKEAV   50 (255)
T ss_pred             EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchH-----------------------------------HHHHHHHHHH
Confidence            5799999999999998  58999999864311000                                   0012233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+..+    .+..-+.+...+ +..+..+++|||++|+++.+...... ...+...+....  +...+..+|..|++|+|
T Consensus        51 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~d  125 (255)
T cd08219          51 LLAKM----KHPNIVAFKESF-EADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRD  125 (255)
T ss_pred             HHHhC----CCCCcceEEEEE-EECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCC
Confidence            44433    222223333322 34566799999999999987653221 223333332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++++|||++..+.......      ....++..++++++......++..|++++...+.+++.
T Consensus       126 l~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~  195 (255)
T cd08219         126 IKSKNIFLTQ--NGKVKLGDFGSARLLTSPGAYA------CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCT  195 (255)
T ss_pred             CCcceEEECC--CCcEEEcccCcceeeccccccc------ccccCCccccCHHHHccCCcCchhhhhhhchhheehhh
Confidence            9999999985  7899999999998775432211      11234556777777766667778899999877666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.37  E-value=3.3e-12  Score=139.42  Aligned_cols=197  Identities=18%  Similarity=0.255  Sum_probs=122.1

Q ss_pred             HHHhCCChhhhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCcccc
Q 004334          282 EEELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (760)
Q Consensus       282 e~elG~~~~~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~  358 (760)
                      ++|++..+.++...|. .++||.|.+|.||+|..  +|+.||||+.......                            
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------------------   54 (343)
T cd07880           3 RQEVNKTIWEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQS----------------------------   54 (343)
T ss_pred             hhhhhhhhhccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccc----------------------------
Confidence            4556656666655564 47899999999999998  6999999986542110                            


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH
Q 004334          359 DWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG  433 (760)
Q Consensus       359 ~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la  433 (760)
                            +.....+.+|+..+.++.    +..-+.+..++..     .....++||||+ |.++.++....  ..+...+.
T Consensus        55 ------~~~~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~--~l~~~~~~  121 (343)
T cd07880          55 ------ELFAKRAYRELRLLKHMK----HENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKHE--KLSEDRIQ  121 (343)
T ss_pred             ------hHHHHHHHHHHHHHHhcC----CCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhcC--CCCHHHHH
Confidence                  011122345555555552    2222333333321     123458999999 66887765322  23333222


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-
Q 004334          434 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-  510 (760)
Q Consensus       434 ~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-  510 (760)
                      ..+  +...+..+|..|++|+|++|.||+++.  ++.++++|||++..+......         ..+...+++++.... 
T Consensus       122 ~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~  190 (343)
T cd07880         122 FLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQTDSEMTG---------YVVTRWYRAPEVILNW  190 (343)
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC--CCCEEEeecccccccccCccc---------cccCCcccCHHHHhCC
Confidence            221  223468899999999999999999985  789999999999876543211         112334455555443 


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      ...+...|++++...+.+++
T Consensus       191 ~~~~~~~Di~slG~ll~~l~  210 (343)
T cd07880         191 MHYTQTVDIWSVGCIMAEML  210 (343)
T ss_pred             CCCCcHHHHHHHHHHHHHHH
Confidence            23456679999887766554

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PTZ00284 protein kinase; Provisional

Probab=99.37  E-value=4.5e-12  Score=144.53  Aligned_cols=185  Identities=15%  Similarity=0.061  Sum_probs=113.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.+...  ...                                   .....|..
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~--~~~-----------------------------------~~~~~e~~  177 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP--KYT-----------------------------------RDAKIEIQ  177 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEecch--hhH-----------------------------------HHHHHHHH
Confidence            5799999999999998  58999999875310  000                                   01122333


Q ss_pred             HHHHHHHh-cCC-CCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccc
Q 004334          377 NAELFASN-FKD-MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFH  451 (760)
Q Consensus       377 nl~~f~~~-~~~-~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffH  451 (760)
                      .+++++.. ..+ ...+.+...+..-....++|||++ |..+.++... ...+....+...+  +-..+..+|. .|++|
T Consensus       178 ~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~-~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiH  255 (467)
T PTZ00284        178 FMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMK-HGPFSHRHLAQIIFQTGVALDYFHTELHLMH  255 (467)
T ss_pred             HHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhcCCeec
Confidence            33333221 111 112333333433344578999988 5566654321 1223333333322  2234788997 59999


Q ss_pred             cCCCCCcEEEeccC--------------CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004334          452 ADPHPGNIAVDDVN--------------GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  517 (760)
Q Consensus       452 aDpHPGNILV~~~~--------------~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~  517 (760)
                      +|+||+|||++...              .+.++|+|||.+.......         ....+...+++++++..+......
T Consensus       256 rDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~---------~~~~gt~~Y~APE~~~~~~~~~~~  326 (467)
T PTZ00284        256 TDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR---------TAIVSTRHYRSPEVVLGLGWMYST  326 (467)
T ss_pred             CCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCcccc---------ccccCCccccCcHHhhcCCCCcHH
Confidence            99999999997511              1259999999875433221         112456778888888766667778


Q ss_pred             ChHHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFLN  531 (760)
Q Consensus       518 D~~al~~~~~~~l~  531 (760)
                      |+++++-.+.+++.
T Consensus       327 DiwSlGvil~ellt  340 (467)
T PTZ00284        327 DMWSMGCIIYELYT  340 (467)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999988777654

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=2.4e-12  Score=145.15  Aligned_cols=134  Identities=19%  Similarity=0.341  Sum_probs=95.6

Q ss_pred             eceeeeccC--CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH---HHHHHHHHHhCCccccCCCCCcEEEeccCCC
Q 004334          393 VPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQILSHGFFHADPHPGNIAVDDVNGG  467 (760)
Q Consensus       393 VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l---v~~~L~qI~~~GffHaDpHPGNILV~~~~~g  467 (760)
                      |-+.|..+-  ...|.|||||+|+.+..++  -+.|+=.+.+|+.-   +.+.++.+|..||+|+|+||.||||+.  +|
T Consensus       691 VVrLyySFQDkdnLYFVMdYIPGGDmMSLL--IrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDr--dG  766 (1034)
T KOG0608|consen  691 VVRLYYSFQDKDNLYFVMDYIPGGDMMSLL--IRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDR--DG  766 (1034)
T ss_pred             eEEEEEEeccCCceEEEEeccCCccHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEcc--CC
Confidence            445565543  4579999999999988763  34555556666543   334578899999999999999999996  99


Q ss_pred             cEEEEeecceeccC----------------------hh-----------hH---HHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004334          468 RLIFYDFGMMGSIS----------------------PN-----------IR---EGLLEAFYGIYEKDADKVLQAMVQMG  511 (760)
Q Consensus       468 ~l~LiDFG~v~~l~----------------------~~-----------~r---~~l~~l~~al~~~D~~~v~~~l~~lG  511 (760)
                      .|+|.|||++.-+.                      ++           .+   +.-..++...+.+++.+++++++.-.
T Consensus       767 HIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~  846 (1034)
T KOG0608|consen  767 HIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLART  846 (1034)
T ss_pred             ceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhccc
Confidence            99999999985320                      00           11   22233444555688889998877665


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 004334          512 VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       512 ~~~~~~D~~al~~~~~~~l  530 (760)
                      -.+...|-+.+..++.+++
T Consensus       847 g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  847 GYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             CccccchhhHhhHHHHHHh
Confidence            4567789999988877665

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.37  E-value=7.3e-12  Score=133.74  Aligned_cols=190  Identities=17%  Similarity=0.214  Sum_probs=119.0

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++...|..+  ..||.|++|+||+|+.  +|+.||||+........                                  
T Consensus        18 ~~~~~~~~~--~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~----------------------------------   61 (297)
T cd06659          18 DPRSLLENY--IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQR----------------------------------   61 (297)
T ss_pred             cchhhHHhh--hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccch----------------------------------
Confidence            333444433  3699999999999998  58999999864421110                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH---HHHHHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLE  442 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la---~~lv~~~L~  442 (760)
                        ...+.+|...+..+    .+...+.+...+ ......+++|||++|.+|.++...  ...+...+.   ..++ ..+.
T Consensus        62 --~~~~~~e~~~l~~l----~hp~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~-~~L~  131 (297)
T cd06659          62 --RELLFNEVVIMRDY----QHQNVVEMYKSY-LVGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATVCESVL-QALC  131 (297)
T ss_pred             --HHHHHHHHHHHHhC----CCCchhhhhhhe-eeCCeEEEEEecCCCCCHHHHHhh--cCCCHHHHHHHHHHHH-HHHH
Confidence              01122333333322    111111111111 223567999999999999886532  223333332   2233 3367


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      .+|..|++|+|++|+||+++.  ++.++|+|||++..+.......      ....+...+++++...-+..+...|++++
T Consensus       132 ~LH~~~ivH~dl~p~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  203 (297)
T cd06659         132 YLHSQGVIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR------KSLVGTPYWMAPEVISRTPYGTEVDIWSL  203 (297)
T ss_pred             HHHhCCeecCCCCHHHeEEcc--CCcEEEeechhHhhcccccccc------cceecCccccCHHHHccCCCCchhhHHHH
Confidence            889999999999999999985  8899999999987665432211      01224456677777766666777899999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      .-.+.+++.
T Consensus       204 G~il~el~~  212 (297)
T cd06659         204 GIMVIEMVD  212 (297)
T ss_pred             HHHHHHHHh
Confidence            877766543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.37  E-value=9.8e-12  Score=128.36  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=123.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|+||+.++....                                   .....+..|..
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-----------------------------------~~~~~~~~e~~   51 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE-----------------------------------EFRKQLLRELK   51 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch-----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  4999999987663221                                   01122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||++|.+|.++.... ..++.......+  +-..+..+|. .|++|+|
T Consensus        52 ~l~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~  125 (264)
T cd06623          52 TLRSCE----SPYVVKCYGAF-YKEGEISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHTKRHIIHRD  125 (264)
T ss_pred             HHHhcC----CCCeeeEEEEE-ccCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhccCCCccCC
Confidence            555442    22222222222 3346679999999999999876432 223433333322  2233678999 9999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||++++  ++.++|+|||+...+.......      ....+...+++++....+..+...|++++...+.+++.
T Consensus       126 l~~~ni~~~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~t  195 (264)
T cd06623         126 IKPSNLLINS--KGEVKIADFGISKVLENTLDQC------NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECAL  195 (264)
T ss_pred             CCHHHEEECC--CCCEEEccCccceecccCCCcc------cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHh
Confidence            9999999986  8899999999998775543221      01123455667777777767778899999987776653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.36  E-value=6.8e-12  Score=131.52  Aligned_cols=185  Identities=18%  Similarity=0.199  Sum_probs=115.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|+|++|+||+|++  +|+.||+|+........                                  .....+.+|+.
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   52 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDP----------------------------------VIKKIALREIR   52 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCc----------------------------------cccHHHHHHHH
Confidence            5689999999999999  58999999865421000                                  00111234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|..+..+... ...++...+...+.+  ..+..+|..|++|+|+
T Consensus        53 ~l~~~----~h~~i~~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl  126 (286)
T cd07847          53 MLKQL----KHPNLVNLIEVF-RRKRKLHLVFEYCDHTVLNELEKN-PRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDV  126 (286)
T ss_pred             HHHhC----CCCCEeeeeeEE-eeCCEEEEEEeccCccHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            44443    222223333333 334567999999999888776432 122344333333222  3477889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||++..++......      ....+...+++++.... ...+...|++++...+.+++.
T Consensus       127 ~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~  196 (286)
T cd07847         127 KPENILITK--QGQIKLCDFGFARILTGPGDDY------TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLT  196 (286)
T ss_pred             ChhhEEEcC--CCcEEECccccceecCCCcccc------cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHh
Confidence            999999985  7899999999998876543210      00112233445555433 234567899999877766543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.36  E-value=6.4e-12  Score=133.05  Aligned_cols=183  Identities=15%  Similarity=0.156  Sum_probs=114.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|++|+......+                                    ....+.+|..
T Consensus        18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~------------------------------------~~~~~~~e~~   61 (292)
T cd06644          18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEE------------------------------------ELEDYMVEIE   61 (292)
T ss_pred             heecCCCCeEEEEEEECCCCceEEEEEeccCCHH------------------------------------HHHHHHHHHH
Confidence            4699999999999998  5899999987553111                                    0112234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+...+ ......++||||++|..+..+.......++...+...+  +-..+..+|..|++|+|+
T Consensus        62 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dl  136 (292)
T cd06644          62 ILATC----NHPYIVKLLGAF-YWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDL  136 (292)
T ss_pred             HHHhC----CCCcEeeeEEEE-EeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence            44443    222222222222 33567899999999999987643222334444333322  223467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~~~~~~~  529 (760)
                      ||.||+++.  ++.++|+|||++..........      ....++..+++++++..     ...+...|+++++..+.++
T Consensus       137 kp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el  208 (292)
T cd06644         137 KAGNVLLTL--DGDIKLADFGVSAKNVKTLQRR------DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM  208 (292)
T ss_pred             CcceEEEcC--CCCEEEccCccceecccccccc------ceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHH
Confidence            999999975  7899999999876543321110      01123445566665432     2234467999998777665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       209 ~  209 (292)
T cd06644         209 A  209 (292)
T ss_pred             h
Confidence            4

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.36  E-value=1.3e-11  Score=126.07  Aligned_cols=188  Identities=18%  Similarity=0.116  Sum_probs=124.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .++|+.|++|.||+|..  +|+.|++|+.+.....                                  ......+.+|.
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~   50 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS----------------------------------EEELEALEREI   50 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccc----------------------------------hHHHHHHHHHH
Confidence            36899999999999999  4999999987653211                                  01112234455


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffH  451 (760)
                      ..+.++.    +..-+.+.... ...  ...+++|||++|.+|.++..... .++...+...+.  -..+..+|..|++|
T Consensus        51 ~~l~~l~----~~~i~~~~~~~-~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~~~h  124 (260)
T cd06606          51 RILSSLQ----HPNIVRYYGSE-RDEEKNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHSNGIVH  124 (260)
T ss_pred             HHHHHcC----CCCEeeEEEEE-ecCCCCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            5555542    22222222222 223  56799999999999998754322 334333333222  23367889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|++|.||++++  ++.++|+|||............    ......++..++.++....+......|++++...+.+++.
T Consensus       125 ~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~  198 (260)
T cd06606         125 RDIKGANILVDS--DGVVKLADFGCAKRLGDIETGE----GTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT  198 (260)
T ss_pred             cCCCHHHEEEcC--CCCEEEcccccEEecccccccc----cccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence            999999999986  7899999999998887654210    0111235566777777766667778899999887766654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.36  E-value=6.8e-12  Score=122.17  Aligned_cols=131  Identities=22%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+|++.|..++||+++..|+.|++|+..++....                                     .....|+..
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~-------------------------------------~~~~~E~~~   45 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTELL-------------------------------------INRENEAEN   45 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcccc-------------------------------------cCHHHHHHH
Confidence            3689999999999999999999999876642100                                     012456777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC-----cccc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG-----FFHA  452 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~G-----ffHa  452 (760)
                      ++.+.+.      ..+|+++....+..+++|||++|.++.+..     ..+ ...... +...+..+|..+     ++|+
T Consensus        46 l~~l~~~------~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~-----~~~-~~~~~~-l~~~l~~LH~~~~~~~~~~Hg  112 (170)
T cd05151          46 SKLAAEA------GIGPKLYYFDPETGVLITEFIEGSELLTED-----FSD-PENLEK-IAKLLKKLHSSPLPDLVPCHN  112 (170)
T ss_pred             HHHHHHh------CCCCceEEEeCCCCeEEEEecCCCcccccc-----ccC-HHHHHH-HHHHHHHHhCCCCCCceeecC
Confidence            7776542      236888877776789999999999887531     011 222233 334567788877     5999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccC
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      |+||+||+++   +++++++|||.++.-+
T Consensus       113 D~~~~Nil~~---~~~~~liDf~~a~~~~  138 (170)
T cd05151         113 DLLPGNFLLD---DGRLWLIDWEYAGMND  138 (170)
T ss_pred             CCCcCcEEEE---CCeEEEEecccccCCC
Confidence            9999999997   5689999999988654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.36  E-value=1.2e-11  Score=126.62  Aligned_cols=185  Identities=17%  Similarity=0.157  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.++.|++|.||+|..  +|+.|++|+.......                                  .+....+.+|.+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS----------------------------------EKEREDALNEVK   51 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC----------------------------------hHHHHHHHHHHH
Confidence            5799999999999999  4899999986542111                                  011122334554


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHHHH--HHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~L~qI~~~GffH  451 (760)
                      .+..+.    +..-+.+...+ ......+++|||++|.+|.+......   ..++...+...+..  ..+..+|..|++|
T Consensus        52 ~l~~l~----~~~~~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H  126 (258)
T cd08215          52 ILKKLN----HPNIIKYYESF-EEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILH  126 (258)
T ss_pred             HHHhcC----CCChhheEEEE-ecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEec
Confidence            444442    21112222222 23367799999999999988654321   33444444433322  3367899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||++++  ++.++|+|||++........  ..    ....++..+++++.......+...|++++...+.+++
T Consensus       127 ~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~--~~----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~  197 (258)
T cd08215         127 RDIKPQNIFLTS--NGLVKLGDFGISKVLSSTVD--LA----KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELC  197 (258)
T ss_pred             ccCChHHeEEcC--CCcEEECCccceeecccCcc--ee----cceeeeecccChhHhccCCCCccccHHHHHHHHHHHH
Confidence            999999999985  78999999999987765431  11    1112444566666665555667789999887665544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.36  E-value=7.9e-12  Score=131.57  Aligned_cols=187  Identities=17%  Similarity=0.085  Sum_probs=118.6

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|+||.+..      +|+.||+|+.+......                                   ....+.
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~   54 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ-----------------------------------NTSGWK   54 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEEEEEeccccChH-----------------------------------HHHHHH
Confidence            5799999999988753      47899999876532111                                   111234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gf  449 (760)
                      +|+..+.++    .+..-+.+...+... ....+++|||++|++|.++...  ..++...+...+.  -..+..+|..|+
T Consensus        55 ~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~l~~~~~~~i~~~l~~~l~~lH~~~i  128 (283)
T cd05080          55 KEINILKTL----YHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK--HKLNLAQLLLFAQQICEGMAYLHSQHY  128 (283)
T ss_pred             HHHHHHHhC----CCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            455555544    222222222222222 2246899999999999887543  2344444433332  234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|.||++++  ++.++|.|||++..+.......-  + .........+++++....+..++..|++++...+.++
T Consensus       129 ~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~--~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el  203 (283)
T cd05080         129 IHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYYR--V-REDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYEL  203 (283)
T ss_pred             eccccChheEEEcC--CCcEEEeecccccccCCcchhhc--c-CCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHH
Confidence            99999999999985  78999999999887754322100  0 0000122235566666666777889999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       204 ~t  205 (283)
T cd05080         204 LT  205 (283)
T ss_pred             Hh
Confidence            64

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.36  E-value=6.1e-12  Score=134.30  Aligned_cols=182  Identities=18%  Similarity=0.219  Sum_probs=119.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|.||+|+.  +|+.|+||...-.-..                            .        ...+.+|..
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~----------------------------~--------~~~~~~e~~   68 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQP----------------------------K--------KELIINEIL   68 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCc----------------------------h--------HHHHHHHHH
Confidence            5799999999999997  6999999975321000                            0        011234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+...+.+...+ ......+++|||++|.+|.++....  ..+...+....  +-..+..+|..|++|+|+
T Consensus        69 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL  141 (296)
T cd06655          69 VMKEL----KNPNIVNFLDSF-LVGDELFVVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLHANQVIHRDI  141 (296)
T ss_pred             HHHhc----CCCceeeeeeeE-ecCceEEEEEEecCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            44443    222222222222 2345679999999999998865422  23444433332  223467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++++|||++..+.+.....      ....+...+++++...-+..+...|++++...+.+++.
T Consensus       142 ~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~llt  210 (296)
T cd06655         142 KSDNVLLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE  210 (296)
T ss_pred             CHHHEEECC--CCCEEEccCccchhcccccccC------CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHh
Confidence            999999985  8899999999988776543211      11124456677777666666778899999877766553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.36  E-value=1.2e-11  Score=129.76  Aligned_cols=186  Identities=16%  Similarity=0.084  Sum_probs=116.1

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..||.|++|+||+|.+.       ++.||||+.+......                                   ....+
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~-----------------------------------~~~~~   56 (277)
T cd05062          12 RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMR-----------------------------------ERIEF   56 (277)
T ss_pred             eeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHH-----------------------------------HHHHH
Confidence            57999999999999863       4679999765421100                                   00112


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------CCCHHHHHHHH--HHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA--VESY  440 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------g~d~~~la~~l--v~~~  440 (760)
                      .+|+..+..+    .+..-+.+... ....+..++||||++|++|.++......         ..+...+...+  +...
T Consensus        57 ~~e~~~l~~l----~~~~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (277)
T cd05062          57 LNEASVMKEF----NCHHVVRLLGV-VSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG  131 (277)
T ss_pred             HHHHHHHHhC----CCCCeeeEEEE-EcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHH
Confidence            3444444333    22222222222 2334568999999999999987532111         11223332222  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      +..+|..|++|+|+||.||++++  ++.++++|||++..+........    .........+++++...-+..++..|++
T Consensus       132 l~~lH~~~~vH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~  205 (277)
T cd05062         132 MAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFTTYSDVW  205 (277)
T ss_pred             HHHHHHCCcccCCcchheEEEcC--CCCEEECCCCCccccCCcceeec----CCCCccCHhhcChhHhhcCCcCchhHHH
Confidence            68899999999999999999986  88999999999876543211000    0001123567788877777778888999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      ++.-.+.+++
T Consensus       206 slG~~l~el~  215 (277)
T cd05062         206 SFGVVLWEIA  215 (277)
T ss_pred             HHHHHHHHHH
Confidence            9987766554

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=8.9e-12  Score=128.71  Aligned_cols=184  Identities=18%  Similarity=0.178  Sum_probs=119.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|.|++|.||+|..  +++.+++|+......+.                                    ...+.+|..
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~------------------------------------~~~~~~e~~   52 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDD------------------------------------FEIIQQEIS   52 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhh------------------------------------HHHHHHHHH
Confidence            6899999999999998  58899999876421110                                    112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|..|.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus        53 ~l~~~----~h~~i~~~~~~~-~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl  127 (262)
T cd06613          53 MLKEC----RHPNIVAYFGSY-LRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDI  127 (262)
T ss_pred             HHHhC----CCCChhceEEEE-EeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence            44444    222222222222 334567999999999999987654333445444333322  22367789999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG---~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||++..+.......      ....++..++++++....   ..+...|++++...+.+++.
T Consensus       128 ~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~t  199 (262)
T cd06613         128 KGANILLTE--DGDVKLADFGVSAQLTATIAKR------KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAE  199 (262)
T ss_pred             ChhhEEECC--CCCEEECccccchhhhhhhhcc------ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHh
Confidence            999999986  7899999999988765432110      011234456667766544   55667899998877666543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=1.4e-11  Score=129.27  Aligned_cols=183  Identities=16%  Similarity=0.154  Sum_probs=116.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|+||+|..  +|+.||+|+.+......                                    ...+..|+.
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~------------------------------------~~~~~~e~~   54 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEE------------------------------------LEDFMVEID   54 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHH------------------------------------HHHHHHHHH
Confidence            4699999999999998  58999999876531111                                    012234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......++||||++|+.|.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus        55 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl  129 (280)
T cd06611          55 ILSEC----KHPNIVGLYEAY-FYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDL  129 (280)
T ss_pred             HHHhC----CCCceeEEEEEE-ecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            44444    222223333322 234567999999999999887543322344433333222  23367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----CCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-----~~~~~~D~~al~~~~~~~  529 (760)
                      +|.||+++.  ++.++++|||............      ....+...++.+++...+     ..+...|++++.-.+.++
T Consensus       130 ~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l  201 (280)
T cd06611         130 KAGNILLTL--DGDVKLADFGVSAKNKSTLQKR------DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIEL  201 (280)
T ss_pred             ChhhEEECC--CCCEEEccCccchhhccccccc------ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHH
Confidence            999999985  8899999999887654332111      011245556677765422     234568999998766655


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       202 ~  202 (280)
T cd06611         202 A  202 (280)
T ss_pred             H
Confidence            4

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.36  E-value=2.6e-12  Score=141.25  Aligned_cols=176  Identities=11%  Similarity=0.050  Sum_probs=113.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +++.||+|+...+..                                          ..|+.
T Consensus        72 ~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~------------------------------------------~~E~~  109 (357)
T PHA03209         72 KTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTT------------------------------------------LIEAM  109 (357)
T ss_pred             EEecCCCCeEEEEEEECCCCceEEEEeCCcccc------------------------------------------HHHHH
Confidence            6899999999999999  478999997543210                                          11333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......++||||+.| .+.++.......+....+...+  +-..+..+|..|++|+|+
T Consensus       110 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDl  183 (357)
T PHA03209        110 LLQNV----NHPSVIRMKDTL-VSGAITCMVLPHYSS-DLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDV  183 (357)
T ss_pred             HHHhC----CCCCCcChhheE-EeCCeeEEEEEccCC-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            33322    222222222222 223457899999976 4555433222233433333222  233478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++.........       .-..++..++++++..-+......|++++.-.+.+++.
T Consensus       184 kp~Nill~~--~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~  251 (357)
T PHA03209        184 KTENIFIND--VDQVCIGDLGAAQFPVVAPAF-------LGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLA  251 (357)
T ss_pred             CHHHEEECC--CCCEEEecCccccccccCccc-------ccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHH
Confidence            999999985  789999999998753322110       01235666777877766666778899999988777653

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.36  E-value=6.2e-12  Score=132.28  Aligned_cols=188  Identities=18%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||+|++|.||+|..      +|+.||||..+......                                    ...+.
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~------------------------------------~~~~~   53 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEH------------------------------------LRDFE   53 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHH------------------------------------HHHHH
Confidence            5799999999999984      37899999865532110                                    11233


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|.+.+.++    .+..-+.+..+..... ...+++|||++|++|.++........+........  +-..+..+|..|+
T Consensus        54 ~e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i  129 (284)
T cd05081          54 REIEILKSL----QHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRY  129 (284)
T ss_pred             HHHHHHHhC----CCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            455544444    2222222222221122 34689999999999998764322223433332222  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|.||++++  +++++|+|||++..+.........   .........+++++....+..+...|++++...+.++
T Consensus       130 ~H~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  204 (284)
T cd05081         130 VHRDLATRNILVES--ENRVKIGDFGLTKVLPQDKEYYKV---REPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  204 (284)
T ss_pred             eeccCCHhhEEECC--CCeEEECCCcccccccCCCcceee---cCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHH
Confidence            99999999999985  789999999999877543211000   0000111224566666556666778999998877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       205 ~~  206 (284)
T cd05081         205 FT  206 (284)
T ss_pred             hh
Confidence            54

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.36  E-value=8.1e-12  Score=138.53  Aligned_cols=86  Identities=15%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|++|.||++++  ++.++|+|||++..+........    .+.......+++++....+..++..|
T Consensus       223 ~aL~yLH~~giiHrDLkp~Nil~~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  296 (374)
T cd05106         223 QGMDFLASKNCIHRDVAARNVLLTD--GRVAKICDFGLARDIMNDSNYVV----KGNARLPVKWMAPESIFDCVYTVQSD  296 (374)
T ss_pred             HHHHHHHHCCEEeccCchheEEEeC--CCeEEEeeceeeeeccCCcceee----ccCCCCccceeCHHHhcCCCCCcccc
Confidence            3478899999999999999999985  78999999999987654321110    11111234577788777777788899


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++.-.+.+++
T Consensus       297 vwSlGvil~ell  308 (374)
T cd05106         297 VWSYGILLWEIF  308 (374)
T ss_pred             HHHHHHHHHHHH
Confidence            999988776654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.36  E-value=7.8e-12  Score=129.93  Aligned_cols=186  Identities=16%  Similarity=0.104  Sum_probs=116.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCC-chhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPg-i~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|+||+|+.  +|+.|+||..... ..+                                  ......+.+|.
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~----------------------------------~~~~~~~~~e~   53 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD----------------------------------AKARADCIKEI   53 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh----------------------------------HHHHHHHHHHH
Confidence            6799999999999997  6999999965431 000                                  00111233454


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +.+..+    .+..-+.+...+ ......+++|||++|.+|.++....   ....+...+...+  +-..+..+|..|++
T Consensus        54 ~~l~~~----~h~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~  128 (267)
T cd08229          54 DLLKQL----NHPNVIKYYASF-IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVM  128 (267)
T ss_pred             HHHHHc----cCCchhhhhhee-EeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            444443    121112222222 1234578999999999999865421   1123333332222  22336789999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|++|.||+++.  ++.++++|||++..+......      .....++..+++++.......+...|++++.-.+.+++
T Consensus       129 H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~  200 (267)
T cd08229         129 HRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMA  200 (267)
T ss_pred             cCCCCHHHEEEcC--CCCEEECcchhhhccccCCcc------cccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHH
Confidence            9999999999985  789999999998776543211      01122445566677665555667789999988776655


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       201 ~  201 (267)
T cd08229         201 A  201 (267)
T ss_pred             h
Confidence            3

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.36  E-value=1.1e-11  Score=129.19  Aligned_cols=183  Identities=14%  Similarity=0.094  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||+|++  +++.|++|.........                                    ...+.+|+.
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~------------------------------------~~~~~~e~~   57 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRY------------------------------------VQPLHEEIA   57 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHH------------------------------------HHHHHHHHH
Confidence            5899999999999998  57899999765532111                                    112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCC--CHHHHHHH--HHHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLGRY--AVESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~--d~~~la~~--lv~~~L~qI~~~Gff  450 (760)
                      .+.+++     ++++  .+++.  ......+++|||++|.+|.++........  +...+...  .+...+..+|..|++
T Consensus        58 ~l~~l~-----h~~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~  130 (268)
T cd06624          58 LHSYLK-----HRNI--VQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIV  130 (268)
T ss_pred             HHHhcC-----CCCe--eeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEe
Confidence            555542     2222  22222  23356799999999999998764322222  33333222  233447788999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCChHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRRTAQF  528 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~--~~~~~D~~al~~~~~~  528 (760)
                      |+|++|.||+++. .++.++|+|||++..+.......      ....++..+++++....+.  .....|++++...+.+
T Consensus       131 h~dl~p~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~  203 (268)
T cd06624         131 HRDIKGDNVLVNT-YSGVVKISDFGTSKRLAGINPCT------ETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVE  203 (268)
T ss_pred             ecCCCHHHEEEcC-CCCeEEEecchhheecccCCCcc------ccCCCCccccChhhhccccccCCchhhhHHHHHHHHH
Confidence            9999999999974 35789999999987764322100      0113455566777664433  4567899999877766


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       204 l~~  206 (268)
T cd06624         204 MAT  206 (268)
T ss_pred             HHh
Confidence            543

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.36  E-value=1.2e-11  Score=132.52  Aligned_cols=182  Identities=16%  Similarity=0.178  Sum_probs=119.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|..||+|..+.....                                   +....+.+|++
T Consensus         7 ~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~-----------------------------------~~~~~~~~E~~   51 (308)
T cd06615           7 GELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKP-----------------------------------AIRNQIIRELK   51 (308)
T ss_pred             eeccCCCCeEEEEEEEcCCCeEEEEEEeccccCH-----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  5899999986653221                                   11122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+.++    .+..-+.+...+. .....+++|||++|++|.++.... ..++...+....  +-..+..+|. +|++|+|
T Consensus        52 ~l~~l----~h~~iv~~~~~~~-~~~~~~lv~ey~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~d  125 (308)
T cd06615          52 VLHEC----NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLREKHKIMHRD  125 (308)
T ss_pred             HHHhC----CCCCCCeEEEEEe-eCCEEEEEeeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECC
Confidence            55554    2222233333332 345679999999999999876432 122322221211  2233677886 6999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++++|||++..+.......        ..+...+++++.......+...|++++...+.+++.
T Consensus       126 l~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~--------~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~  193 (308)
T cd06615         126 VKPSNILVNS--RGEIKLCDFGVSGQLIDSMANS--------FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAI  193 (308)
T ss_pred             CChHHEEEec--CCcEEEccCCCccccccccccc--------CCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHh
Confidence            9999999985  7899999999987764432111        123455667777665666778899999887766653

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.36  E-value=7.6e-13  Score=142.28  Aligned_cols=180  Identities=22%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             CccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.+-+|+||||.||+|.+  ++++||||-..|+-+-. ..                                       |
T Consensus        28 ~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k-nr---------------------------------------E   67 (364)
T KOG0658|consen   28 AVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK-NR---------------------------------------E   67 (364)
T ss_pred             eeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC-cH---------------------------------------H
Confidence            346899999999999999  58999999766642211 11                                       2


Q ss_pred             HHHHHHHHHhcCCCCc-eeeceeeeccCCC----eEEEEeecCCCchhhhhhhh---hcC---CCHHHHHHHHHHHHHHH
Q 004334          375 AANAELFASNFKDMDY-VKVPTIFWEYTTP----QILTMEYVPGIKINRIQSLD---ELG---VDRKRLGRYAVESYLEQ  443 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~-V~VP~vy~e~st~----~vLVME~ieG~~L~d~~~l~---~~g---~d~~~la~~lv~~~L~q  443 (760)
                      ...|.+    . ++++ |..-..|...++.    .-|||||++- +|.+....-   ...   ++-+.....+.+ .+..
T Consensus        68 l~im~~----l-~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfr-gl~y  140 (364)
T KOG0658|consen   68 LQIMRK----L-DHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFR-GLAY  140 (364)
T ss_pred             HHHHHh----c-CCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHH-HHHH
Confidence            222221    1 3333 3333333222222    2589999963 555543310   111   122333333333 3778


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|.+|+.|||+||.||||++ ..|.++|+|||.++.+.+.....  ..+.    .-+....+.+...--.+...|+|+.+
T Consensus       141 Lh~~~IcHRDIKPqNlLvD~-~tg~LKicDFGSAK~L~~~epni--SYic----SRyYRaPELifga~~Yt~~IDiWSaG  213 (364)
T KOG0658|consen  141 LHSHGICHRDIKPQNLLVDP-DTGVLKICDFGSAKVLVKGEPNI--SYIC----SRYYRAPELIFGATEYTTSIDIWSAG  213 (364)
T ss_pred             HHhcCcccCCCChheEEEcC-CCCeEEeccCCcceeeccCCCce--eEEE----eccccCHHHHcCccccCceeEEhhhh
Confidence            89999999999999999996 57999999999999998765531  1111    11222233333333445667888777


Q ss_pred             HHHHHHH
Q 004334          524 RTAQFFL  530 (760)
Q Consensus       524 ~~~~~~l  530 (760)
                      =.+.+++
T Consensus       214 CV~aELl  220 (364)
T KOG0658|consen  214 CVMAELL  220 (364)
T ss_pred             HHHHHHh
Confidence            6655554

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.36  E-value=1.1e-11  Score=128.65  Aligned_cols=182  Identities=15%  Similarity=0.151  Sum_probs=119.5

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|++|.||+|.. +|+.||||..+.+....                                     ..+.+|...
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~-------------------------------------~~~~~E~~~   54 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSP-------------------------------------EAFLAEANL   54 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCCCCcH-------------------------------------HHHHHHHHH
Confidence            5799999999999998 68999999876532110                                     112344444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+..-+.+..++  .....+++|||++|++|.++.... ....+.......+  +-..++.+|..|++|+|+
T Consensus        55 l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl  128 (260)
T cd05067          55 MKQL----QHPRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDL  128 (260)
T ss_pred             HHhc----CCcCeeeEEEEE--ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccc
Confidence            4444    222223333332  234579999999999998865322 1223433333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||++++  ++.+.++|||.+..+........     ........+++++....+..++..|++++...+.+++
T Consensus       129 ~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~  197 (260)
T cd05067         129 RAANILVSE--TLCCKIADFGLARLIEDNEYTAR-----EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV  197 (260)
T ss_pred             cHHhEEEcC--CCCEEEccCcceeecCCCCcccc-----cCCcccccccCHHHhccCCcCcccchHHHHHHHHHHH
Confidence            999999986  78999999999988763221100     0112234566777777777778899999987776654

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.36  E-value=3e-12  Score=143.17  Aligned_cols=183  Identities=16%  Similarity=0.181  Sum_probs=132.5

Q ss_pred             ccccccccEEEEEEECCe-eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARLKGE-EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       300 PIasaSiGQVhrA~l~G~-~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      -||+|-||.||.|.++|. +||||.++++--.                                     .+.+.+||+.|
T Consensus       213 ~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~-------------------------------------~~~f~~Ea~iM  255 (468)
T KOG0197|consen  213 ELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMS-------------------------------------PEAFLREAQIM  255 (468)
T ss_pred             HhcCCccceEEEEEEcCCCcccceEEeccccC-------------------------------------hhHHHHHHHHH
Confidence            589999999999999876 9999999986110                                     11234788888


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHHHHHH--HHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--L~qI~~~GffHaDpH  455 (760)
                      .+++    |..-|..-.|... ..+.+|||||++-++|.++... ....++..++....++.+  +..|-+++++||||-
T Consensus       256 k~L~----H~~lV~l~gV~~~-~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLA  330 (468)
T KOG0197|consen  256 KKLR----HEKLVKLYGVCTK-QEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLA  330 (468)
T ss_pred             HhCc----ccCeEEEEEEEec-CCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhh
Confidence            8774    3344544444422 1257999999999999998765 334455666665555444  777889999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..||||++  ++.+++.||||++.+.++.-..-     .-..--....+++.+..|..+-..|+++|+..+.+++.
T Consensus       331 ARNiLV~~--~~~vKIsDFGLAr~~~d~~Y~~~-----~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT  399 (468)
T KOG0197|consen  331 ARNILVDE--DLVVKISDFGLARLIGDDEYTAS-----EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFT  399 (468)
T ss_pred             hhheeecc--CceEEEcccccccccCCCceeec-----CCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhc
Confidence            99999986  88999999999996655432100     00011234567888888888999999999988776654

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.36  E-value=1.3e-11  Score=130.04  Aligned_cols=183  Identities=17%  Similarity=0.178  Sum_probs=121.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++++.|++|+||+|.+  +++.|++|+......                                     ....+.+|..
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------------------------------------~~~~~~~e~~   67 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-------------------------------------NKELIINEIL   67 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEEEEEecCch-------------------------------------hHHHHHHHHH
Confidence            6899999999999999  489999999765321                                     0011233443


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+...+.+...+ ......+++|||++|.+|.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus        68 ~l~~l----~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl  142 (286)
T cd06614          68 IMKDC----KHPNIVDYYDSY-LVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDI  142 (286)
T ss_pred             HHHHC----CCCCeeEEEEEE-EECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCC
Confidence            34333    222223333333 334678999999999999997654332344443333222  23367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++++|||....+.......      ....++..++.++...-+..+...|++++...+.+++.
T Consensus       143 ~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~  211 (286)
T cd06614         143 KSDNILLSK--DGSVKLADFGFAAQLTKEKSKR------NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAE  211 (286)
T ss_pred             ChhhEEEcC--CCCEEECccchhhhhccchhhh------ccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHh
Confidence            999999985  7899999999987765432211      11123445666666655556678899999988776654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.36  E-value=1.2e-11  Score=128.52  Aligned_cols=182  Identities=17%  Similarity=0.183  Sum_probs=120.1

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.+|.|++|.||+|.+ ++..|++|+.+++-..                                     ...+.+|+..
T Consensus        12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~-------------------------------------~~~~~~e~~~   54 (260)
T cd05073          12 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-------------------------------------VEAFLAEANV   54 (260)
T ss_pred             eEecCccceEEEEEEecCCccEEEEecCCChhH-------------------------------------HHHHHHHHHH
Confidence            6899999999999998 5778999987663110                                     0123345554


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+...+.+...+.+  ...+++|||++|++|.++.... ....+...+...+  +-..+..+|..|++|+|+
T Consensus        55 l~~l----~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl  128 (260)
T cd05073          55 MKTL----QHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL  128 (260)
T ss_pred             HHhc----CCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            4443    23333444444433  5679999999999998875432 1122333322222  223367899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||+++.  ++.++|+|||.+..+.......-     ........+++++....+..+...|++++.-.+.+++
T Consensus       129 ~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~  197 (260)
T cd05073         129 RAANILVSA--SLVCKIADFGLARVIEDNEYTAR-----EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV  197 (260)
T ss_pred             CcceEEEcC--CCcEEECCCcceeeccCCCcccc-----cCCcccccccCHhHhccCCcCccccchHHHHHHHHHH
Confidence            999999985  78999999999987654321100     0011234466777777777777889999987776655

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.35  E-value=1.1e-11  Score=130.08  Aligned_cols=185  Identities=14%  Similarity=0.116  Sum_probs=121.3

Q ss_pred             cccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|+||+|+.  +|+    .|++|+......                                   .+....+.
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~-----------------------------------~~~~~~~~   57 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS-----------------------------------PKANKEIL   57 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC-----------------------------------HHHHHHHH
Confidence            6899999999999997  343    689997655321                                   11112344


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gff  450 (760)
                      +|+..+.++    .+..-+.+.....  +...+++|||++|++|.+.........+...+...+.  -..+..+|..|++
T Consensus        58 ~e~~~l~~l----~h~~i~~~~~~~~--~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~  131 (279)
T cd05057          58 DEAYVMASV----DHPHVVRLLGICL--SSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLV  131 (279)
T ss_pred             HHHHHHHhC----CCCCcceEEEEEe--cCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            566666655    2222233333332  3678999999999999987644333344444443332  2347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|++|.||++++  ++.++|+|||++..+........    .........+++++....+..+...|.+++.-.+.+++
T Consensus       132 H~di~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~----~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~  205 (279)
T cd05057         132 HRDLAARNVLVKT--PQHVKITDFGLAKLLDVDEKEYH----AEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELM  205 (279)
T ss_pred             ecccCcceEEEcC--CCeEEECCCcccccccCccccee----cCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHh
Confidence            9999999999985  78999999999987764322110    00011123566677666666777889999887666554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.35  E-value=8.7e-12  Score=131.04  Aligned_cols=183  Identities=17%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|.||+|..  +|+.|++|+........                                 ......+..|...+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~~~~~~~e~~~l   47 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK---------------------------------RKGEQMALNEKKIL   47 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh---------------------------------hhhhHHHHHHHHHH
Confidence            68899999999987  59999999865421000                                 00111223455555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++.    +..-+.+...+ +.....+++|||++|++|.+...... ..+....+....  +-..+..+|..|++|+|++
T Consensus        48 ~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~  122 (277)
T cd05577          48 EKVS----SRFIVSLAYAF-ETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLK  122 (277)
T ss_pred             HhCC----CCCEeeeeeEE-ecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            5542    22222332333 33456799999999999988654322 123333332221  2234678999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||++++  ++.++|+|||.+..+......       ....+...+++++...-+..+...|++++...+.+++
T Consensus       123 p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~  188 (277)
T cd05577         123 PENVLLDD--HGNVRISDLGLAVELKGGKKI-------KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMI  188 (277)
T ss_pred             HHHEEECC--CCCEEEccCcchhhhccCCcc-------ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHh
Confidence            99999985  789999999988766432110       0112344556677666565667789999987766554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.35  E-value=7.3e-12  Score=130.67  Aligned_cols=188  Identities=15%  Similarity=0.186  Sum_probs=117.1

Q ss_pred             cccccccccEEEEEEE--CC---eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G---~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +-+|.|++|.||+|++  +|   ..||||+......+.                                   ....+..
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~   54 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK-----------------------------------QRRDFLS   54 (269)
T ss_pred             eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHH-----------------------------------HHHHHHH
Confidence            5699999999999998  34   369999876532111                                   1112344


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+..+    .+..-+.+... .......++||||++|++|.++........+...+....  +-..+..+|..|++|
T Consensus        55 e~~~l~~l----~h~ni~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H  129 (269)
T cd05065          55 EASIMGQF----DHPNIIHLEGV-VTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVH  129 (269)
T ss_pred             HHHHHHhC----CCcCcceEEEE-ECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEee
Confidence            55544444    22222222222 233456799999999999988765433334444443332  223467889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~-l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||++++  ++.++++|||....+....... +.... + ......+++++...-+..+...|++++.-.+.+++
T Consensus       130 ~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~-~-~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l  205 (269)
T cd05065         130 RDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSSL-G-GKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM  205 (269)
T ss_pred             cccChheEEEcC--CCcEEECCCccccccccCcccccccccc-C-CCcceeecCHhHhccCcccchhhhhhhHHHHHHHh
Confidence            999999999985  7899999999987664332110 00000 0 00122456677666666677889999887665543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.35  E-value=1.6e-11  Score=127.70  Aligned_cols=188  Identities=15%  Similarity=0.165  Sum_probs=114.8

Q ss_pred             cccccccccEEEEEEE--C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.+|.|++|.||+|++  +   +..||||..+.+....  .+                                ...+.+
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~--~~--------------------------------~~~~~~   50 (273)
T cd05035           5 KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTY--SE--------------------------------IEEFLS   50 (273)
T ss_pred             cccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCH--HH--------------------------------HHHHHH
Confidence            5799999999999998  2   3789999876432111  00                                011233


Q ss_pred             HHHHHHHHHHhcCCCCc-eeeceeeeccC-----CCeEEEEeecCCCchhhhhhhhhc-----CCCHHHHHHHH--HHHH
Q 004334          374 EAANAELFASNFKDMDY-VKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA--VESY  440 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~-V~VP~vy~e~s-----t~~vLVME~ieG~~L~d~~~l~~~-----g~d~~~la~~l--v~~~  440 (760)
                      |...+..+     ++++ +.+...+.+..     ...+++|||++|++|.++......     ..+...+...+  +-..
T Consensus        51 e~~~l~~l-----~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a  125 (273)
T cd05035          51 EAACMKDF-----DHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG  125 (273)
T ss_pred             HHHHHHhC-----CCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHH
Confidence            44433333     2222 22222221111     235899999999999876533211     22333332222  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      +..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    ........+++++....+..+...|++
T Consensus       126 L~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~~~~~~Dv~  199 (273)
T cd05035         126 MEYLSNRNFIHRDLAARNCMLRE--DMTVCVADFGLSKKIYSGDYYRQG----RIAKMPVKWIAIESLADRVYTSKSDVW  199 (273)
T ss_pred             HHHHHhCCeeccccchheEEECC--CCeEEECCccceeecccccccccc----ccccCCccccCHhhcccCCCCcccchH
Confidence            78899999999999999999986  789999999998876543211000    011122345666666666677889999


Q ss_pred             HHHHHHHHHHH
Q 004334          521 AVRRTAQFFLN  531 (760)
Q Consensus       521 al~~~~~~~l~  531 (760)
                      ++.-.+.+++.
T Consensus       200 SlG~il~el~~  210 (273)
T cd05035         200 AFGVTMWEIAT  210 (273)
T ss_pred             HHHHHHHHHHh
Confidence            99887766553

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.35  E-value=5.8e-12  Score=137.80  Aligned_cols=189  Identities=19%  Similarity=0.260  Sum_probs=117.4

Q ss_pred             hhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       292 iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      +...|. .+.||.|++|.||+|+.  +|+.||||+........                                  +..
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~   59 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNV----------------------------------THA   59 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccCh----------------------------------hHH
Confidence            334453 37899999999999998  69999999753211000                                  001


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L  441 (760)
                      ..+.+|...+.++.    +..-+.+...+..     .....++||||++| ++.+.....   ++...+...+  +-..+
T Consensus        60 ~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~---l~~~~~~~~~~ql~~aL  131 (353)
T cd07850          60 KRAYRELVLMKLVN----HKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQMD---LDHERMSYLLYQMLCGI  131 (353)
T ss_pred             HHHHHHHHHHHhcC----CCCCcceeeeeccCCCccccCcEEEEEeccCC-CHHHHHhhc---CCHHHHHHHHHHHHHHH
Confidence            12234555555442    2222222222211     11246999999987 555543211   3333332222  22347


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      ..+|..|++|+|++|+||+++.  ++.++|+|||++..+......       ....+...+++++...........|+++
T Consensus       132 ~~LH~~gi~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dvws  202 (353)
T cd07850         132 KHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWS  202 (353)
T ss_pred             HHHHhCCeeeCCCCHHHEEECC--CCCEEEccCccceeCCCCCCC-------CCCcccccccCHHHHhCCCCCCchhhHh
Confidence            8899999999999999999985  789999999999877653220       0012344566777776666778889999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      ++..+.+++.
T Consensus       203 lG~~l~~l~~  212 (353)
T cd07850         203 VGCIMGEMIR  212 (353)
T ss_pred             HHHHHHHHHH
Confidence            9987776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.35  E-value=6.8e-12  Score=145.87  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=103.6

Q ss_pred             CccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH-HHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD-ECASVLYQEA  375 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~-E~~~~l~~EA  375 (760)
                      ..+.||.|++|.||+|.+.++.+++|+..+.....-                             .+-+ .....+.+|+
T Consensus       337 ~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~-----------------------------~~~~~~~~~~~~~E~  387 (535)
T PRK09605        337 PDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHP-----------------------------ELDERLRTERTRAEA  387 (535)
T ss_pred             ccceeccCCcEEEEEEeecCccceeEEEecccccch-----------------------------hHHHHHHHHHHHHHH
Confidence            357899999999999999888888887554221110                             0000 0123456788


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      +.+.+++     .+++.+|.++.......+|||||++|.+|.++..      ....++..++ ..+.++|..|++|+|+|
T Consensus       388 ~~l~~l~-----~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~------~~~~~~~~i~-~~L~~lH~~giiHrDlk  455 (535)
T PRK09605        388 RLLSEAR-----RAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE------GNPELVRKVG-EIVAKLHKAGIVHGDLT  455 (535)
T ss_pred             HHHHhhc-----ccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH------HHHHHHHHHH-HHHHHHHhCCCccCCCC
Confidence            8888774     3456778877766677899999999999988653      1234444444 45788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccCh
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      |+||++.   +++++++|||+++..++
T Consensus       456 p~NILl~---~~~~~liDFGla~~~~~  479 (535)
T PRK09605        456 TSNFIVR---DDRLYLIDFGLGKYSDL  479 (535)
T ss_pred             hHHEEEE---CCcEEEEeCcccccCCc
Confidence            9999994   67899999999988654

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.35  E-value=3.1e-12  Score=141.04  Aligned_cols=186  Identities=17%  Similarity=0.192  Sum_probs=111.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+........                             .     ....+.+|..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------~-----~~~~~~~E~~   51 (372)
T cd07853           6 RPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNL-----------------------------V-----SCKRVFRELK   51 (372)
T ss_pred             ceeeeCCCEEEEEEEECCCCCEEEEEeccccccch-----------------------------H-----HHHHHHHHHH
Confidence            6799999999999998  69999999764311100                             0     0012334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+..++    +..-+.+-.++..-    ....+++|||+++ .+.+.... ...++...+...+  +-..+..+|..|++
T Consensus        52 ~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~iv  125 (372)
T cd07853          52 MLCFFK----HDNVLSALDILQPPHIDPFEEIYVVTELMQS-DLHKIIVS-PQPLSSDHVKVFLYQILRGLKYLHSAGIL  125 (372)
T ss_pred             HHHhCC----CCCcCCHhheecCCCccccceEEEEeecccc-CHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            444442    22222222222111    1256999999986 45443321 1223333322221  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~  529 (760)
                      |+|+||.||+++.  ++.++|+|||++...........     .-..++..++++++... ...+...|+++++-.+.++
T Consensus       126 H~dlkp~Nili~~--~~~~kL~Dfg~a~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el  198 (372)
T cd07853         126 HRDIKPGNLLVNS--NCVLKICDFGLARVEEPDESKHM-----TQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAEL  198 (372)
T ss_pred             CCCCChHHEEECC--CCCEEeccccceeecccCccccC-----CCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHH
Confidence            9999999999985  88999999999986644321110     00112445666766543 2345678999999877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       199 ~~  200 (372)
T cd07853         199 LG  200 (372)
T ss_pred             Hc
Confidence            53

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=8.7e-13  Score=144.32  Aligned_cols=190  Identities=17%  Similarity=0.179  Sum_probs=128.9

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++...|..+  +-||.||||.||+|..  .++.||+|+..-+-.+....                               
T Consensus        10 ~~~~~~~~~--~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIe-------------------------------   56 (467)
T KOG0201|consen   10 DPELLYTKL--ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIE-------------------------------   56 (467)
T ss_pred             Ccccccccc--hhccccccceeeeeeeccccceEEEEEechhhcchhhH-------------------------------
Confidence            455566655  4699999999999999  59999999975432221111                               


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH--HHHHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG--RYAVESYL  441 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la--~~lv~~~L  441 (760)
                          .+.+|..-+..+..     +  +|-+.|..  ..+..+++||||.|+++.++...... .+...++  -..+...+
T Consensus        57 ----diqqei~~Ls~~~~-----~--~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~-~~E~~i~~ilre~l~~l  124 (467)
T KOG0201|consen   57 ----DIQQEISVLSQCDS-----P--NITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNI-LDEFEIAVILREVLKGL  124 (467)
T ss_pred             ----HHHHHHHHHHhcCc-----c--hHHhhhhheeecccHHHHHHHhcCcchhhhhccCCC-CccceeeeehHHHHHHh
Confidence                11222222222211     1  11111111  24567999999999999987654332 1222222  23344557


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      ..+|.++.+|+|+|+.||++..  +|.++|.|||.+++++......  ..    +.+++-.|+++++...-....+|+++
T Consensus       125 ~ylH~~~kiHrDIKaanil~s~--~g~vkl~DfgVa~ql~~~~~rr--~t----fvGTPfwMAPEVI~~~~Y~~KADIWS  196 (467)
T KOG0201|consen  125 DYLHSEKKIHRDIKAANILLSE--SGDVKLADFGVAGQLTNTVKRR--KT----FVGTPFWMAPEVIKQSGYDTKADIWS  196 (467)
T ss_pred             hhhhhcceecccccccceeEec--cCcEEEEecceeeeeechhhcc--cc----ccccccccchhhhccccccchhhhhh
Confidence            8899999999999999999996  6999999999999998776543  22    34789999999999645677899999


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      ++-.+.++.
T Consensus       197 LGITaiEla  205 (467)
T KOG0201|consen  197 LGITAIELA  205 (467)
T ss_pred             hhHHHHHHh
Confidence            987665543

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.35  E-value=1e-11  Score=129.29  Aligned_cols=182  Identities=14%  Similarity=0.076  Sum_probs=118.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +++.|++|+...+...                                     ...+.+|.+
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~-------------------------------------~~~~~~e~~   54 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------VEEFLKEAA   54 (263)
T ss_pred             eecCCcccceEEEEEEecCCceEEEEEecCCchH-------------------------------------HHHHHHHHH
Confidence            5799999999999998  4899999986542110                                     011233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHH---HHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLG---RYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la---~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|++|.++..... ...+...+.   ..++ ..+..+|..|++|+
T Consensus        55 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~-~~l~~lH~~~i~H~  128 (263)
T cd05052          55 VMKEI----KHPNLVQLLGVC-TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS-SAMEYLEKKNFIHR  128 (263)
T ss_pred             HHHhC----CCCChhheEEEE-cCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHH-HHHHHHHhCCEeec
Confidence            44443    222223333332 23456789999999999998654321 223333332   2233 33678999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||++++  ++.++|+|||++..+.........     .......+++++....+..++..|++++.-.+.+++
T Consensus       129 dlkp~nil~~~--~~~~kl~df~~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  199 (263)
T cd05052         129 DLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAHA-----GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA  199 (263)
T ss_pred             ccCcceEEEcC--CCcEEeCCCccccccccceeeccC-----CCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHH
Confidence            99999999985  889999999999877543221100     011123567777777677777889999988776665

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.35  E-value=1e-11  Score=131.01  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=77.9

Q ss_pred             CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccC-----CCcEEEEe
Q 004334          401 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVN-----GGRLIFYD  473 (760)
Q Consensus       401 st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~-----~g~l~LiD  473 (760)
                      .+..+|||||++|++|.++.......++.......+  +...+..+|..|++|+|+||.||+++...     .+.+++.|
T Consensus        88 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d  167 (274)
T cd05076          88 GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSD  167 (274)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecC
Confidence            356799999999999988764333333433333222  22347889999999999999999997411     22489999


Q ss_pred             ecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHH
Q 004334          474 FGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       474 FG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~  529 (760)
                      ||..........          ..++..+++++.... ...++..|++++.-.+.++
T Consensus       168 ~g~~~~~~~~~~----------~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el  214 (274)
T cd05076         168 PGVSFTALSREE----------RVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEI  214 (274)
T ss_pred             Cccccccccccc----------cccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHH
Confidence            998755432211          123344566665543 3456778999998766554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.35  E-value=7.9e-12  Score=128.65  Aligned_cols=184  Identities=14%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|.+|.||+|..  +++.||||+....-..                                  .+....+.+|+.
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (256)
T cd08220           6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT----------------------------------KDERLAAQNECQ   51 (256)
T ss_pred             EEecccCceEEEEEEEcCCCcEEEEEEEeccccc----------------------------------cHHHHHHHHHHH
Confidence            5799999999999998  5899999986542100                                  011123445666


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .++++.     ++++ .+... .......+++|||++|.+|.++..... ...+...+...+  +-..+..+|..|++|+
T Consensus        52 ~l~~~~-----~~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~  125 (256)
T cd08220          52 VLKLLS-----HPNIIEYYEN-FLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHR  125 (256)
T ss_pred             HHhhCC-----CCchhheeee-EecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            555552     2222 22222 223456799999999999998764322 223444433322  2233678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|+||++++ .++.+++.|||+...+.......       ...+...+++++.......+...|++++...+.+++
T Consensus       126 dl~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~  195 (256)
T cd08220         126 DLKTQNILLDK-HKMVVKIGDFGISKILSSKSKAY-------TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELA  195 (256)
T ss_pred             CCCHHHEEEcC-CCCEEEEccCCCceecCCCcccc-------ccccCCcccCchhccCCCCCcccchHHHHHHHHHHH
Confidence            99999999975 34568999999998876543211       012344566777766666677789999987766654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.35  E-value=1.5e-11  Score=125.16  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=107.1

Q ss_pred             cccccccccEEEEEEE-C-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCC--ccccchHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECA  368 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~--~~~~~l~~i~~E~~  368 (760)
                      -+|++|--+-||.|.. +       +..|||||-+....+-        +....++.. .+...  ..+.+|..++... 
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~F--------k~~~~y~~~-~~rf~~~~~k~~~~~~~~~w-   72 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEF--------KNRDKYIKD-DYRFKDRFSKLNPRKIIRMW-   72 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeE--------cChhhhccC-CcccccCcCCCCHHHHHHHH-
Confidence            3789999999999986 3       3799999998764322        111122211 01111  1123455544433 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCC---HHHHHHHHHHHHHHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAVESYLEQIL  445 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d---~~~la~~lv~~~L~qI~  445 (760)
                        -.+|++++.++++.     ++.+|+++.  ..+.+|||||++|..+..- .+.....+   ...+...++.....++|
T Consensus        73 --a~kE~r~L~rl~~~-----Gv~vP~pi~--~~~~~lvME~Ig~~~~~~~-~Lkd~~~~~~~~~~i~~~i~~~l~~l~H  142 (197)
T cd05146          73 --AEKEMHNLKRMQKA-----GIPCPEVVV--LKKHVLVMSFIGDDQVPAP-KLKDAKLNDEEMKNAYYQVLSMMKQLYK  142 (197)
T ss_pred             --HHHHHHHHHHHHHc-----CCCCCeEEE--ecCCEEEEEEcCCCCccch-hhhccccCHHHHHHHHHHHHHHHHHHHH
Confidence              35799999999753     588999994  4889999999987533210 01111122   22334444555444558


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  485 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r  485 (760)
                      ..|++|+||+|.||++.   +++++|||||.+...+...-
T Consensus       143 ~~glVHGDLs~~NIL~~---~~~v~iIDF~qav~~~hp~a  179 (197)
T cd05146         143 ECNLVHADLSEYNMLWH---DGKVWFIDVSQSVEPTHPHG  179 (197)
T ss_pred             hCCeecCCCCHHHEEEE---CCcEEEEECCCceeCCCCCH
Confidence            99999999999999997   57899999999998876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.35  E-value=7.2e-12  Score=130.56  Aligned_cols=188  Identities=14%  Similarity=0.144  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE--CCe--eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~--~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|.||+|+.  .++  .||||.........                                  +-...+.+|
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~----------------------------------~~~~~~~~E   50 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR----------------------------------SEMEDFLSE   50 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCH----------------------------------HHHHHHHHH
Confidence            4689999999999998  343  69999866532111                                  011233455


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhc-----CCCHHHHHHHH--HHHHHH
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA--VESYLE  442 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~-----g~d~~~la~~l--v~~~L~  442 (760)
                      ...+..+    .+..-+.+......     .....+++|||++|++|.++......     .++...+...+  +-..+.
T Consensus        51 ~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  126 (272)
T cd05075          51 AVCMKEF----DHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGME  126 (272)
T ss_pred             HHHHHhC----CCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHH
Confidence            5555554    22222222222111     12346899999999999876532211     12333332222  223478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      .+|.+|++|+|+||.||++++  ++.++++|||++..+........    -......+.+++++....+..++..|++++
T Consensus       127 ~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~~~~pe~~~~~~~~~~~Di~sl  200 (272)
T cd05075         127 YLSSKSFIHRDLAARNCMLNE--NMNVCVADFGLSKKIYNGDYYRQ----GRIAKMPVKWIAIESLADRVYTTKSDVWSF  200 (272)
T ss_pred             HHHHCCeeccccchhheEEcC--CCCEEECCCCcccccCcccceec----CCcccCCcccCCHHHccCCCcChHHHHHHH
Confidence            899999999999999999985  78999999999987754321000    011123455667777666667788899999


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      .-.+.+++
T Consensus       201 G~il~el~  208 (272)
T cd05075         201 GVTMWEIA  208 (272)
T ss_pred             HHHHHHHH
Confidence            87776554

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.35  E-value=1.7e-11  Score=126.66  Aligned_cols=185  Identities=15%  Similarity=0.089  Sum_probs=119.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||.++.  +|+.|++|.....-..                                  .+-...+.+|..
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (256)
T cd08221           6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS----------------------------------EKERRDALNEIV   51 (256)
T ss_pred             eEecccCCceEEEEEEcCCCcEEEEEEEeecccc----------------------------------hhHHHHHHHHHH
Confidence            5799999999999988  6899999975321000                                  001112345655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .++++    .+..-+.+...+ ......+++|||++|++|.+..... ....+...+...+  +-..+..+|..|++|+|
T Consensus        52 ~l~~~----~h~~i~~~~~~~-~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~d  126 (256)
T cd08221          52 ILSLL----QHPNIIAYYNHF-MDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRD  126 (256)
T ss_pred             HHHhC----CCCCeeEEEeEE-ecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence            55554    222233333333 3345679999999999999876433 1223434333332  22346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||++++  ++.++++|||.+..+......      .....+...++++++..-...+...|++++...+.+++
T Consensus       127 l~p~ni~~~~--~~~~kl~d~~~~~~~~~~~~~------~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~  195 (256)
T cd08221         127 IKTLNIFLTK--AGLIKLGDFGISKILGSEYSM------AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELL  195 (256)
T ss_pred             CChHhEEEeC--CCCEEECcCcceEEccccccc------ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHH
Confidence            9999999986  789999999999877554310      01122455666777665444556789999987776654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.34  E-value=1.9e-11  Score=128.62  Aligned_cols=183  Identities=15%  Similarity=0.134  Sum_probs=115.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||+|..  +|..|++|.......+.                                    ...+.+|+.
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~------------------------------------~~~~~~e~~   54 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEE------------------------------------LEDYMVEID   54 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHH------------------------------------HHHHHHHHH
Confidence            4699999999999999  48889999865421111                                    011233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+...+ ......++||||++|..+.++.......++...+....  +-..+..+|..|++|+|+
T Consensus        55 ~l~~l----~h~~ii~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dl  129 (282)
T cd06643          55 ILASC----DHPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDL  129 (282)
T ss_pred             HHHHC----CCCCeeeEEEEE-eeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCC
Confidence            44433    222223333333 23456799999999999987643222234444333332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-----lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|.||+++.  +++++++|||++.........      .....++..++++++..     ....+...|++++.-.+.++
T Consensus       130 kp~nili~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el  201 (282)
T cd06643         130 KAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM  201 (282)
T ss_pred             CcccEEEcc--CCCEEEccccccccccccccc------cccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHH
Confidence            999999985  789999999998766432211      00122455677777763     22334568999988766655


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       202 ~  202 (282)
T cd06643         202 A  202 (282)
T ss_pred             c
Confidence            3

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.34  E-value=1.3e-11  Score=129.79  Aligned_cols=186  Identities=13%  Similarity=0.128  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+..       ++.||||+.+.....                                   .....+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~   55 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEG-----------------------------------PLREEF   55 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCH-----------------------------------HHHHHH
Confidence            46899999999999872       478999987642211                                   111223


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l  436 (760)
                      .+|...+..+    .+..-+.+...+ ......++++||+++..+.++.....               ...+...+...+
T Consensus        56 ~~e~~~~~~l----~h~~iv~~~~~~-~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (283)
T cd05091          56 KHEAMMRSRL----QHPNIVCLLGVV-TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIV  130 (283)
T ss_pred             HHHHHHHhcC----CCCCcCeEEEEE-cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHH
Confidence            3344333332    222223333322 22345789999999999988754221               012222222221


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                        +-..+..+|..|++|+|+||.||++.+  ++.++|+|||++..+........    .+.....+.+++++....+..+
T Consensus       131 ~ql~~aL~~lH~~gi~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  204 (283)
T cd05091         131 TQIAAGMEFLSSHHVVHKDLATRNVLVFD--KLNVKISDLGLFREVYAADYYKL----MGNSLLPIRWMSPEAIMYGKFS  204 (283)
T ss_pred             HHHHHHHHHHHHcCccccccchhheEecC--CCceEecccccccccccchheee----ccCccCCccccCHHHHhcCCCC
Confidence              223368899999999999999999985  78899999999887754322110    0111123467788877777778


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      +..|++++.-.+.+++
T Consensus       205 ~~~Dv~slG~~l~el~  220 (283)
T cd05091         205 IDSDIWSYGVVLWEVF  220 (283)
T ss_pred             cchhHHHHHHHHHHHH
Confidence            8899999988776654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.34  E-value=1.1e-11  Score=127.62  Aligned_cols=186  Identities=20%  Similarity=0.160  Sum_probs=114.5

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +|+|++|+||+|+.  +|+.|++|+..+.-...                                 .+....+.+|...+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~---------------------------------~~~~~~~~~e~~~l   47 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIR---------------------------------KNQVDQVLTERDIL   47 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhh---------------------------------hhHHHHHHHHHHHH
Confidence            58899999999999  49999999875521100                                 01112233444444


Q ss_pred             HHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCccccC
Q 004334          379 ELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~GffHaD  453 (760)
                      .++.    +.   .+++++..  .....+++|||++|++|.++..... ..+...+   +..++ ..+..+|..|++|+|
T Consensus        48 ~~~~----h~---~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~-~~L~~lH~~~i~H~d  118 (265)
T cd05579          48 SQAQ----SP---YVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIV-LALEYLHSNGIIHRD  118 (265)
T ss_pred             HhCC----Cc---chhHHHHheecCcEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHH-HHHHHHHHcCeecCC
Confidence            4332    11   22233222  2345699999999999988654222 2333333   23333 336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHH--HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG--LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~--l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||++++  ++.++|+|||++..........  ..........++..++.++....+..+...|++++...+.+++
T Consensus       119 i~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~  195 (265)
T cd05579         119 LKPDNILIDS--NGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFL  195 (265)
T ss_pred             CCHHHeEEcC--CCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHH
Confidence            9999999986  8899999999877543321100  0000011123455566777766665666789999987766654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.34  E-value=1e-11  Score=129.70  Aligned_cols=187  Identities=15%  Similarity=0.176  Sum_probs=118.7

Q ss_pred             cccccccccEEEEEEE--CC---eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G---~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|.+|.||+|++  +|   ..||+|..++.....                                   ....+.+
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~   54 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK-----------------------------------QRRDFLS   54 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHH-----------------------------------HHHHHHH
Confidence            6799999999999987  23   479999876532211                                   1112334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...+.++    .+..-+.+...+ ......+++|||++|++|.++........+...+...+  +-..+..+|..|++|
T Consensus        55 e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h  129 (267)
T cd05066          55 EASIMGQF----DHPNIIHLEGVV-TKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVH  129 (267)
T ss_pred             HHHHHHhC----CCCCcceEEEEE-ecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEee
Confidence            54444444    232333444433 23456799999999999998764333233444333322  223467889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++++|||++..+........ ..  .-......+++++....+..++..|++++.-.+.+++
T Consensus       130 ~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~-~~--~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell  203 (267)
T cd05066         130 RDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAY-TT--RGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM  203 (267)
T ss_pred             hhhchhcEEECC--CCeEEeCCCCcccccccccceee-ec--CCCccceeecCHhHhccCccCchhhhHHHHHHHHHHh
Confidence            999999999985  78999999999987754321110 00  0001123456677666666777889999987766544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.34  E-value=1.1e-11  Score=130.77  Aligned_cols=182  Identities=19%  Similarity=0.230  Sum_probs=117.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.||+|+...+....                                   ....+.+|..
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~~~~~E~~   55 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSS-----------------------------------VRKQILRELQ   55 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcch-----------------------------------HHHHHHHHHH
Confidence            5799999999999998  49999999876532111                                   1122344544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+..+     +++++.-+.-+.......+|||||++|++|.++.... ..+....+....  +...+..+|. +|++|+|
T Consensus        56 ~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~d  129 (284)
T cd06620          56 IMHEC-----RSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRD  129 (284)
T ss_pred             HHHHc-----CCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccC
Confidence            44443     2233322222333446789999999999998865322 122322222221  2223566775 7999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  +++++++|||++..+......        ...+...+++++....+..+...|++++.-.+.+++.
T Consensus       130 l~p~nil~~~--~~~~~l~d~gl~~~~~~~~~~--------~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~t  197 (284)
T cd06620         130 IKPSNILVNS--RGQIKLCDFGVSGELINSIAD--------TFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELAL  197 (284)
T ss_pred             CCHHHEEECC--CCcEEEccCCcccchhhhccC--------ccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHh
Confidence            9999999985  789999999998765332211        1234556667777666666778899999877666553

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.34  E-value=3.5e-12  Score=133.34  Aligned_cols=187  Identities=20%  Similarity=0.263  Sum_probs=121.5

Q ss_pred             cccccccccEEEEEEEC------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +-||.|+||.||+|++.      +..|+||+..+.....                                   ....+.
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~-----------------------------------~~~~~~   49 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEE-----------------------------------EEEEFL   49 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHH-----------------------------------HHHHHH
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccc-----------------------------------cceeee
Confidence            46999999999999996      6899999986632211                                   112234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|++.+.++    .+..-+.+-.+.. ......+||||+++++|.++.... ....+...+...+  +...+..+|..++
T Consensus        50 ~e~~~l~~l----~h~ni~~~~g~~~-~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~i  124 (259)
T PF07714_consen   50 NEIQILRKL----RHPNIVKLYGFCI-ENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNI  124 (259)
T ss_dssp             HHHHHHHTH----SBTTBE-EEEEEE-SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecccccccc----ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455555544    2222233333332 455689999999999999976544 3445555554443  3344788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|.||+++.  ++.++|.|||+...........    ..........+++++...-+..+...|+++|+-.+.++
T Consensus       125 iH~~l~~~nill~~--~~~~Kl~~f~~~~~~~~~~~~~----~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei  198 (259)
T PF07714_consen  125 IHGNLSPSNILLDS--NGQVKLSDFGLSRPISEKSKYK----NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEI  198 (259)
T ss_dssp             EEST-SGGGEEEET--TTEEEEESTTTGEETTTSSSEE----ESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc--cccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999986  7899999999998873211100    00011233455677777777777788999998877665


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       199 ~~  200 (259)
T PF07714_consen  199 LT  200 (259)
T ss_dssp             HT
T ss_pred             cc
Confidence            43

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.34  E-value=1.1e-11  Score=129.79  Aligned_cols=183  Identities=18%  Similarity=0.142  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|+|++|.||+|+.  +|+.|++|+........                                  + ...+.+|..
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~-~~~~~~e~~   51 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAED----------------------------------E-IEDIQQEIQ   51 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeeccccch----------------------------------H-HHHHHHHHH
Confidence            5799999999999998  58999999864321000                                  0 012334554


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+..+.     ++++.-+..+.......++||||++|.+|.++....  ..+...+...+.  -..+..+|..|++|+|+
T Consensus        52 ~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl  124 (274)
T cd06609          52 FLSQCR-----SPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHEEGKIHRDI  124 (274)
T ss_pred             HHHHcC-----CCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            444442     233322222223346679999999999998875433  233333333222  23356789999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++++|||++..+........      ...+...++.++....+..++..|++++.-.+.+++.
T Consensus       125 ~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~~------~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~t  193 (274)
T cd06609         125 KAANILLSE--EGDVKLADFGVSGQLTSTMSKRN------TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAK  193 (274)
T ss_pred             CHHHEEECC--CCCEEEcccccceeecccccccc------cccCCccccChhhhccCCCCchhhHHHHHHHHHHHHh
Confidence            999999986  88999999999988865421110      0123445667777766667788999999887766653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.34  E-value=7.3e-12  Score=131.27  Aligned_cols=186  Identities=19%  Similarity=0.169  Sum_probs=118.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|+||+........                                  .....+.+|..
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~----------------------------------~~~~~~~~e~~   51 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG----------------------------------GIPNQALREIK   51 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccc----------------------------------hhhHHHHHHHH
Confidence            4699999999999998  58999999876521100                                  11112334544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .++++.    +..-+.+...+ ......++||||+ |.+|.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus        52 ~l~~~~----~~~i~~~~~~~-~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  125 (286)
T cd07832          52 ALQACQ----HPYVVKLLDVF-PHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDL  125 (286)
T ss_pred             HHHhCC----CCCCcceeeEE-ecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCc
Confidence            444442    22222333322 2355679999999 999988754333334444333322  223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||++++  ++.++++|||++..+.......+.     ...++..+++++..... ...+..|++++...+.+++.
T Consensus       126 ~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~t  196 (286)
T cd07832         126 KPANLLISA--DGVLKIADFGLARLFSEEEPRLYS-----HQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLN  196 (286)
T ss_pred             CHHHEEEcC--CCcEEEeeeeecccccCCCCCccc-----cccCcccccCceeeeccccCCchhHHHHHHHHHHHHHc
Confidence            999999986  789999999999887654321111     11234455666654332 23567899998877766553

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.34  E-value=1.4e-11  Score=130.41  Aligned_cols=183  Identities=15%  Similarity=0.158  Sum_probs=119.2

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|..  +|+.|++|+.+-...                                    .-...+.+|+
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~------------------------------------~~~~~~~~e~   67 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQ------------------------------------QRRELLFNEV   67 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccch------------------------------------hHHHHHHHHH
Confidence            36899999999999997  589999997531100                                    0011133444


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+     +++++.-+.-+.......+++|||++|.+|.++...  ...+...+...+  +-..+..+|..|++|+|
T Consensus        68 ~~l~~~-----~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~d  140 (285)
T cd06648          68 VIMRDY-----QHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQGVIHRD  140 (285)
T ss_pred             HHHHHc-----CCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            444433     223322222223345678999999999999987543  223433333322  22336889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++|+|||+...+.......      ....+...+++++....+..+...|++++...+.+++.
T Consensus       141 l~p~Nil~~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~  210 (285)
T cd06648         141 IKSDSILLTS--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVD  210 (285)
T ss_pred             CChhhEEEcC--CCcEEEcccccchhhccCCccc------ccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHh
Confidence            9999999985  8899999999887664432111      01124556677777665666677899999887776654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.34  E-value=1.9e-11  Score=129.21  Aligned_cols=184  Identities=15%  Similarity=0.135  Sum_probs=115.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+++|++|.||+|+.  +|+.||+|+..+.-.                                     ....+.+|..
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-------------------------------------~~~~~~~e~~   70 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-------------------------------------VDEEIEAEYN   70 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEeccccc-------------------------------------HHHHHHHHHH
Confidence            5799999999999998  589999998765210                                     0011233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc----CCCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~----st~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++.   .+..-+.+...+...    ....++||||++|++|.++...   .........+...+  +-..++.+|..
T Consensus        71 ~l~~l~---~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  147 (291)
T cd06639          71 ILQSLP---NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN  147 (291)
T ss_pred             HHHHhc---CCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            444432   122223333333211    2357999999999999886532   11122333322222  22347889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----CCCCCChHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----LVPTGDTTAV  522 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-----~~~~~D~~al  522 (760)
                      |++|+|++|+||+++.  ++.++++|||.+..+.......      ....+...+++++....+.     .+...|++++
T Consensus       148 ~ivH~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  219 (291)
T cd06639         148 RIIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSL  219 (291)
T ss_pred             CeeccCCCHHHEEEcC--CCCEEEeecccchhcccccccc------cCccCCccccChhhhcCCCCcccccCCccchHHH
Confidence            9999999999999985  7899999999988765432111      0112445566676654432     3567899999


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      ...+.+++
T Consensus       220 Gvi~~el~  227 (291)
T cd06639         220 GITAIELG  227 (291)
T ss_pred             HHHHHHHh
Confidence            87766654

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.34  E-value=1.3e-11  Score=130.26  Aligned_cols=189  Identities=15%  Similarity=0.137  Sum_probs=116.4

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|+.     +|+.||||+.+......                            .    .+....+.+
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~----------------------------~----~~~~~~~~~   53 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ----------------------------K----AKTAEHTRT   53 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh----------------------------h----hhHHHHHHH
Confidence            5799999999999986     36889999875410000                            0    011122334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...+.++.    +++.+.-...........++||||++|++|.+..... ..+....+...+  +...+..+|..|++|
T Consensus        54 E~~~l~~~~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~~~~H  128 (288)
T cd05583          54 ERQVLEAVR----RCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR-EHFTESEVRVYIAEIVLALDHLHQLGIIY  128 (288)
T ss_pred             HHHHHHhcc----CCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhc-CCcCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            555555442    2333222222223445678999999999998764321 223333333222  223467889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~--~~~~~D~~al~~~~~~~  529 (760)
                      +|+||.||+++.  ++.++++|||++..+.......     .....++..+++++....+.  .....|++++...+.++
T Consensus       129 ~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el  201 (288)
T cd05583         129 RDIKLENILLDS--EGHVVLTDFGLSKEFLAEEEER-----AYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFEL  201 (288)
T ss_pred             cCCCHHHeEECC--CCCEEEEECccccccccccccc-----cccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHH
Confidence            999999999985  7899999999987765432110     01123455566676655443  45678999988776655


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       202 ~t  203 (288)
T cd05583         202 LT  203 (288)
T ss_pred             Hh
Confidence            43

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.34  E-value=1.3e-11  Score=128.11  Aligned_cols=194  Identities=14%  Similarity=0.118  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.||+|+.++.......                              -.+....+.+|++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~------------------------------~~~~~~~~~~e~~   55 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSE------------------------------QEEVVEALRKEIR   55 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchh------------------------------HHHHHHHHHHHHH
Confidence            5799999999999998  6899999987652211100                              0112234556666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      .+.+++    +...+.+...+ ......+++|||++|.+|.++.... ...+...+...  .+-..+..+|..|++|+|+
T Consensus        56 ~l~~l~----h~~iv~~~~~~-~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i  129 (268)
T cd06630          56 LMARLN----HPHIIRMLGAT-CEDSHFNLFVEWMAGGSVSHLLSKY-GAFKEAVIINYTEQLLRGLSYLHENQIIHRDV  129 (268)
T ss_pred             HHHHcC----CCceehhhcee-ccCCeEEEEEeccCCCcHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            666652    22222222222 2335679999999999999875422 22333333222  2223467899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++. .+..++|+|||+...+.......  ........+...+++++...-...+...|++++...+.+++.
T Consensus       130 ~~~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~  203 (268)
T cd06630         130 KGANLLIDS-TGQRLRIADFGAAARLAAKGTGA--GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT  203 (268)
T ss_pred             CHHHEEEcC-CCCEEEEcccccccccccccccC--CccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHh
Confidence            999999974 23469999999998876532110  000011123445666666654555677899999887776653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.34  E-value=1.4e-11  Score=131.32  Aligned_cols=187  Identities=15%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             ccccccccccEEEEEEE---------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l---------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      ..+||.|++|.||+|+.         ++..||+|+.+......                                   -.
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------~~   64 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEK-----------------------------------DL   64 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchH-----------------------------------HH
Confidence            37899999999999974         24579999876532111                                   01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------------CCCHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------GVDRKRL  432 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------------g~d~~~l  432 (760)
                      ..+.+|...+..+.    ++++ +.+...+ ......+++|||++|++|.++......               .++...+
T Consensus        65 ~~~~~E~~~l~~l~----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (304)
T cd05101          65 SDLVSEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDL  139 (304)
T ss_pred             HHHHHHHHHHHhhc----cCCCchheeEEE-ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHH
Confidence            12334444444431    2222 2233322 234567899999999999987643211               1222222


Q ss_pred             HHH--HHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004334          433 GRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       433 a~~--lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l  510 (760)
                      ...  .+-..+..+|.+|++|+|++|.||++++  ++.++|+|||.+..+.........    ........+++++...-
T Consensus       140 ~~~~~qi~~al~~LH~~givH~dlkp~Nili~~--~~~~kl~D~g~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~  213 (304)
T cd05101         140 VSCTYQVARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDVNNIDYYKKT----TNGRLPVKWMAPEALFD  213 (304)
T ss_pred             HHHHHHHHHHHHHHHHCCeeecccccceEEEcC--CCcEEECCCccceecccccccccc----cCCCCCceeeCchhhcc
Confidence            222  1233468899999999999999999985  789999999999877543221100    00112234667776665


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      +..+...|++++...+.+++
T Consensus       214 ~~~~~~~Di~slG~~l~el~  233 (304)
T cd05101         214 RVYTHQSDVWSFGVLMWEIF  233 (304)
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            65677789999987665543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.33  E-value=1.8e-11  Score=128.03  Aligned_cols=177  Identities=14%  Similarity=0.091  Sum_probs=109.8

Q ss_pred             ccccccccEEEEEEEC--------------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          300 PIAAASLGQVHRARLK--------------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       300 PIasaSiGQVhrA~l~--------------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      .||.|.+|+||+|++.              +..|++|+..+...+                                   
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-----------------------------------   46 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRD-----------------------------------   46 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhh-----------------------------------
Confidence            5899999999999862              235899986652111                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  442 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~  442 (760)
                       ....+.+|+..+..+     +++++ .+.... ......+++|||++|+++..+........+...+....  +...+.
T Consensus        47 -~~~~~~~~~~~l~~l-----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~  119 (262)
T cd05077          47 -ISLAFFETASMMRQV-----SHKHIVLLYGVC-VRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALS  119 (262)
T ss_pred             -HHHHHHHHHHHHHhC-----CCCCEeeEEEEE-ecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence             111233444444433     22332 222222 23346799999999999987654322233443332222  223478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCC-------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCC
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGG-------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLV  514 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g-------~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~  514 (760)
                      .+|..|++|+|++|.||++..  ++       .+++.|||.+..+.....          ..++..+++++... .+..+
T Consensus       120 ~lH~~~ivH~dlkp~Nill~~--~~~~~~~~~~~~l~d~g~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~  187 (262)
T cd05077         120 YLEDKDLVHGNVCTKNILLAR--EGIDGECGPFIKLSDPGIPITVLSRQE----------CVERIPWIAPECVEDSKNLS  187 (262)
T ss_pred             HhhhCCeECCCCCcccEEEec--CCccCCCCceeEeCCCCCCccccCccc----------ccccccccChhhhcCCCCCC
Confidence            899999999999999999974  33       389999998866532210          12344566777654 34456


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      ...|++++.-.+.+++
T Consensus       188 ~~~DiwslG~~l~el~  203 (262)
T cd05077         188 IAADKWSFGTTLWEIC  203 (262)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            6789999987766554

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.33  E-value=3.7e-12  Score=141.93  Aligned_cols=179  Identities=11%  Similarity=0.088  Sum_probs=115.2

Q ss_pred             cccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ..||.|++|.||+|..    .++.||||+...+.  .                                       ..+|
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~--~---------------------------------------~~~E  136 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK--T---------------------------------------PGRE  136 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEeccccc--c---------------------------------------HHHH
Confidence            5799999999999986    25789999765421  0                                       1234


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.+.++    .+..-+.+...+ ......+++||++.| .+.++.. ....+....+....  +-..+..+|..|++|+
T Consensus       137 ~~il~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~-~~~~l~~~~~~~i~~ql~~aL~~LH~~givHr  209 (392)
T PHA03207        137 IDILKTI----SHRAIINLIHAY-RWKSTVCMVMPKYKC-DLFTYVD-RSGPLPLEQAITIQRRLLEALAYLHGRGIIHR  209 (392)
T ss_pred             HHHHHhc----CCCCccceeeeE-eeCCEEEEEehhcCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence            4444443    122122222222 334567999999976 4444432 11223333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||.|||++.  ++.++|+|||++..+.......-.    ....++..++++++...+......|++++.-.+.+++.
T Consensus       210 Dlkp~Nill~~--~~~~~l~DfG~a~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~  282 (392)
T PHA03207        210 DVKTENIFLDE--PENAVLGDFGAACKLDAHPDTPQC----YGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSV  282 (392)
T ss_pred             CCCHHHEEEcC--CCCEEEccCccccccCcccccccc----cccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHH
Confidence            99999999985  789999999999776543211100    11235677788888877777778999999988777653

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.33  E-value=1.2e-11  Score=128.28  Aligned_cols=185  Identities=14%  Similarity=0.110  Sum_probs=115.5

Q ss_pred             ccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|++|.||+|.+    ++..||||+.+......                                  .....+.+|.
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~~~~~~e~   47 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDP----------------------------------ALKDELLREA   47 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcH----------------------------------HHHHHHHHHH
Confidence            489999999999975    47899999875432110                                  0112233444


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+...+  .....+++|||++|++|.++..... ..+...+....  +-..+..+|..|++|+|
T Consensus        48 ~~l~~l----~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~~~i~H~d  120 (257)
T cd05116          48 NVMQQL----DNPYIVRMIGIC--EAESWMLVMELAELGPLNKFLQKNK-HVTEKNITELVHQVSMGMKYLEETNFVHRD  120 (257)
T ss_pred             HHHHhC----CCCCcceEEEEE--cCCCcEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEeecc
Confidence            444433    222222222221  1345689999999999988764322 23333333222  22346889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.||++++  ++.++++|||++..+..........   ........+++++....+..+...|++++.-.+.+++
T Consensus       121 lkp~nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  192 (257)
T cd05116         121 LAARNVLLVT--QHYAKISDFGLSKALGADENYYKAK---THGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAF  192 (257)
T ss_pred             cchhhEEEcC--CCeEEECCCccccccCCCCCeeeec---CCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHH
Confidence            9999999985  7899999999998765432210000   0001124566777776666777889999987776654

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.33  E-value=8.9e-12  Score=130.93  Aligned_cols=182  Identities=13%  Similarity=0.171  Sum_probs=114.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||+|+.  +|+.||+|+....-..                                     ...+..|..
T Consensus        22 ~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~-------------------------------------~~~~~~e~~   64 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDE-------------------------------------EEEIKLEIN   64 (282)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecChHH-------------------------------------HHHHHHHHH
Confidence            5799999999999999  5899999986432100                                     011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--------cCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHH--HHHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--------YTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRY--AVESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--------~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~--lv~~~L~qI~  445 (760)
                      .+.++.    +++++  .+.+..        .....+++|||++|++|.++...... ..+...+...  .+-..+..+|
T Consensus        65 ~l~~~~----~h~~i--~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  138 (282)
T cd06636          65 MLKKYS----HHRNI--ATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH  138 (282)
T ss_pred             HHHHhc----CCCcE--EEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            344332    22222  222221        12356899999999999887643222 2333322222  2334478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTT  520 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~  520 (760)
                      ..|++|+|++|.||++++  ++.++|+|||++..+.......      ....++..+++++.+..     ...+...|++
T Consensus       139 ~~~ivH~dl~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~l~~~~~~~~~~~~~~Dvw  210 (282)
T cd06636         139 AHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIACDENPDATYDYRSDIW  210 (282)
T ss_pred             HCCcccCCCCHHHEEECC--CCCEEEeeCcchhhhhccccCC------CcccccccccCHhhcCcccCcCcCCCcccchh
Confidence            999999999999999986  7899999999987664322110      11224556677776542     2234567999


Q ss_pred             HHHHHHHHHHH
Q 004334          521 AVRRTAQFFLN  531 (760)
Q Consensus       521 al~~~~~~~l~  531 (760)
                      ++...+.+++.
T Consensus       211 slG~~l~el~~  221 (282)
T cd06636         211 SLGITAIEMAE  221 (282)
T ss_pred             HHHHHHHHHHh
Confidence            99887766653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.33  E-value=8.5e-12  Score=133.68  Aligned_cols=189  Identities=14%  Similarity=0.131  Sum_probs=114.7

Q ss_pred             cCccccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ++...||.|++|.||+|+.    +++.||||+....-.                                      ....
T Consensus         4 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~--------------------------------------~~~~   45 (317)
T cd07868           4 YEGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI--------------------------------------SMSA   45 (317)
T ss_pred             ccccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC--------------------------------------cHHH
Confidence            3456899999999999996    357899997654210                                      0012


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhh--------cCCCHHH---HHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDE--------LGVDRKR---LGRYAVES  439 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~--------~g~d~~~---la~~lv~~  439 (760)
                      .+|++.+.++    .+..-+.+..++.... ...+++|||+++ .+.++.....        ..++...   ++..++ .
T Consensus        46 ~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~-~  119 (317)
T cd07868          46 CREIALLREL----KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQIL-D  119 (317)
T ss_pred             HHHHHHHHhc----CCCCCcceeeeEecCCCcEEEEEEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHH-H
Confidence            3455555544    2333344444443322 345899999976 5555432211        1122222   222222 3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEec--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCC
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPT  516 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~  516 (760)
                      .+..+|..|++|+|+||.|||+..  ..++.++|+|||++..++..... ...  ..-..++..++++++... ...+..
T Consensus       120 al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~-~~~--~~~~~~t~~y~aPE~~~~~~~~~~~  196 (317)
T cd07868         120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP-LAD--LDPVVVTFWYRAPELLLGARHYTKA  196 (317)
T ss_pred             HHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCcc-ccc--cCCccccccccCCHHHcCCCCcCch
Confidence            477899999999999999999952  13578999999999876543211 000  001123455777776654 335667


Q ss_pred             CChHHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFLN  531 (760)
Q Consensus       517 ~D~~al~~~~~~~l~  531 (760)
                      .|++++.-.+.+++.
T Consensus       197 ~DiwslG~il~el~~  211 (317)
T cd07868         197 IDIWAIGCIFAELLT  211 (317)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            899999987766654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.33  E-value=9.7e-12  Score=130.48  Aligned_cols=185  Identities=15%  Similarity=0.136  Sum_probs=113.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                  .....+.+|+.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~e~~   51 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEE----------------------------------GVPSTAIREIS   51 (285)
T ss_pred             eEecccCceEEEEEEECCCCcEEEEEEeccccccC----------------------------------CchHHHHHHHH
Confidence            5799999999999998  58999999875421100                                  00112334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh-hh-cCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DE-LGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~-~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +..-+.+...+ ......++||||++| .+.++... .. ..++...+...+  +-..+..+|..|++|+
T Consensus        52 ~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~  125 (285)
T cd07861          52 LLKELQ----HPNIVCLQDVL-MQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHR  125 (285)
T ss_pred             HHHhcC----CCCEeeeEEEE-eeCCeEEEEEecCCC-CHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            555542    22222333322 234567999999986 56554322 11 223444433222  2234688999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++.  ++.++|+|||++..+....+..      ....+...+++++..... ..+...|+++++-.+.+++.
T Consensus       126 dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t  197 (285)
T cd07861         126 DLKPQNLLIDN--KGVIKLADFGLARAFGIPVRVY------THEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMAT  197 (285)
T ss_pred             CCCHHHEEEcC--CCcEEECcccceeecCCCcccc------cCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHH
Confidence            99999999985  8899999999988664432110      000123445666655332 23556799998877666553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.33  E-value=7.8e-12  Score=133.18  Aligned_cols=185  Identities=14%  Similarity=0.091  Sum_probs=112.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||+|..+.......                                   ...+.+|.
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------~~~~~~E~   55 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGA-----------------------------------PCTAIREV   55 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCc-----------------------------------hhHHHHHH
Confidence            36899999999999998  589999998764321110                                   00122344


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+...+ ......++||||++| ++.+.........+...+...+  +-..+..+|..|++|+|
T Consensus        56 ~~l~~l----~h~nI~~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~d  129 (301)
T cd07873          56 SLLKDL----KHANIVTLHDII-HTEKSLTLVFEYLDK-DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRD  129 (301)
T ss_pred             HHHHhc----CCCCcceEEEEE-ecCCeEEEEEecccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCC
Confidence            444444    222222333332 233557999999986 5655443222234443333322  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++++|||++..........-      .......+++++.... ...+...|++++...+.+++.
T Consensus       130 lkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t  200 (301)
T cd07873         130 LKPQNLLINE--RGELKLADFGLARAKSIPTKTYS------NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMST  200 (301)
T ss_pred             CCHHHEEECC--CCcEEECcCcchhccCCCCCccc------ccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHh
Confidence            9999999985  78999999999876543221100      0012344555655432 224456799998877766543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=99.33  E-value=2.5e-11  Score=124.85  Aligned_cols=81  Identities=32%  Similarity=0.632  Sum_probs=63.6

Q ss_pred             ceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcE
Q 004334          390 YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRL  469 (760)
Q Consensus       390 ~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l  469 (760)
                      .+.+-+-.+.+++..+|+||||||.+++++..+.      ..++..++ ..++++|.+|++|+||||||++++   ++.+
T Consensus       104 yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~------e~~~~ki~-~~ikqlH~~G~~HGD~hpgNFlv~---~~~i  173 (229)
T PF06176_consen  104 YLAAEKKIFRYTSSYVLLMEYIEGVELNDIEDID------EDLAEKIV-EAIKQLHKHGFYHGDPHPGNFLVS---NNGI  173 (229)
T ss_pred             eeeeeeeeccceeEEEEEEEEecCeecccchhcC------HHHHHHHH-HHHHHHHHcCCccCCCCcCcEEEE---CCcE
Confidence            3444455567888899999999999999875432      23444444 468999999999999999999997   4669


Q ss_pred             EEEeecceecc
Q 004334          470 IFYDFGMMGSI  480 (760)
Q Consensus       470 ~LiDFG~v~~l  480 (760)
                      +++||+..+..
T Consensus       174 ~iID~~~k~~~  184 (229)
T PF06176_consen  174 RIIDTQGKRMS  184 (229)
T ss_pred             EEEECcccccc
Confidence            99999988764

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.33  E-value=9.8e-12  Score=129.97  Aligned_cols=186  Identities=17%  Similarity=0.161  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEEC------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|+++      |+.||||+.++....                                   +....+.
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-----------------------------------~~~~~~~   54 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-----------------------------------QHRSDFE   54 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-----------------------------------HHHHHHH
Confidence            57999999999999972      689999998764221                                   0111233


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeee--cc--CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFW--EY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  446 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~--e~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~  446 (760)
                      +|...+..+    .+ ++  +++.+.  ..  ....+++|||++|.+|.++........+...+....  +-..+..+|.
T Consensus        55 ~ei~~l~~l----~~-~~--i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~  127 (284)
T cd05038          55 REIEILRTL----DH-EN--IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGS  127 (284)
T ss_pred             HHHHHHHhC----CC-CC--hheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHh
Confidence            444444433    12 22  223221  22  235799999999999998764333234444333322  2234678899


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      .|++|+|++|.||+++.  ++.++|.|||++..+.........   .........+++++....+......|++++.-.+
T Consensus       128 ~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l  202 (284)
T cd05038         128 QRYIHRDLAARNILVES--EDLVKISDFGLAKVLPEDKDYYYV---KEPGESPIFWYAPECLRTSKFSSASDVWSFGVTL  202 (284)
T ss_pred             CCeecCCCCHHhEEEcC--CCCEEEcccccccccccCCcceec---cCCCCCcccccCcHHHccCCCCcccchHHHhhhh
Confidence            99999999999999985  789999999999988643211000   0001122234556666556667778999998777


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       203 ~el~t  207 (284)
T cd05038         203 YELFT  207 (284)
T ss_pred             heeec
Confidence            66654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.33  E-value=3.4e-11  Score=129.54  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=120.6

Q ss_pred             hCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       285 lG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      ++..++++|..+.  .+|.|++|.||+|+.  +|+.|++|+........                               
T Consensus        15 ~~~~~~~~~~~~~--~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~-------------------------------   61 (313)
T cd06633          15 YKDDPEEIFVGLH--EIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT-------------------------------   61 (313)
T ss_pred             ccCCHHHHhhcce--eeccCCCeEEEEEEECCCCcEEEEEEEeccccCc-------------------------------
Confidence            4466777766554  599999999999998  68999999865421100                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESY  440 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~  440 (760)
                        ......+.+|...+.++.    +...+.+..++. .....+++|||+.| .+.+........++...+...+  +-..
T Consensus        62 --~~~~~~~~~E~~~l~~l~----h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~a  133 (313)
T cd06633          62 --NEKWQDIIKEVKFLQQLK----HPNTIEYKGCYL-KEHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITHGALQG  133 (313)
T ss_pred             --hHHHHHHHHHHHHHHhCC----CCCCccEEEEEE-eCCEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence              000112344555555442    222233333332 23557999999987 4555433222234443333322  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCC
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTG  517 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~  517 (760)
                      +..+|..|++|+|++|.||++++  ++.++|+|||++....+...          ..++..++++++..   -+......
T Consensus       134 l~~LH~~gi~H~dl~p~nili~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~s  201 (313)
T cd06633         134 LAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASKSSPANS----------FVGTPYWMAPEVILAMDEGQYDGKV  201 (313)
T ss_pred             HHHHHHCCeecCCCChhhEEECC--CCCEEEeecCCCcccCCCCC----------ccccccccChhhccccCCCCCCchh
Confidence            78899999999999999999985  78999999998865433211          12344566777653   24456678


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |++++...+.+++
T Consensus       202 Dv~slGvil~el~  214 (313)
T cd06633         202 DVWSLGITCIELA  214 (313)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999987766554

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.33  E-value=7.5e-12  Score=131.33  Aligned_cols=185  Identities=19%  Similarity=0.218  Sum_probs=118.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.|+||+.+.....                                  .+....+.+|.+
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~----------------------------------~~~~~~~~~e~~   52 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDD----------------------------------EDVKKTALREVK   52 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhccc----------------------------------ccchhHHHHHHH
Confidence            5799999999999998  5899999986542110                                  011223445555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+..++. .....+++|||++|..+..+... ..+.+...+....  +-..+..+|..|++|+|+
T Consensus        53 ~l~~l~----~~~i~~~~~~~~-~~~~~~iv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl  126 (288)
T cd07833          53 VLRQLR----HENIVNLKEAFR-RKGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDI  126 (288)
T ss_pred             HHHhcC----CCCeeehhheEE-ECCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            555552    222233333332 23557999999999777654322 2234444333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||++++  ++.++|+|||.+..+.........     ...+...++++++.... ..+...|++++...+.+++
T Consensus       127 ~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~~~~-----~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~  196 (288)
T cd07833         127 KPENILVSE--SGVLKLCDFGFARALRARPASPLT-----DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELL  196 (288)
T ss_pred             CHHHeEECC--CCCEEEEeeecccccCCCcccccc-----CcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHH
Confidence            999999986  889999999999887655431111     01123345566665544 4566789999887666554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.32  E-value=2.7e-11  Score=125.27  Aligned_cols=189  Identities=20%  Similarity=0.138  Sum_probs=119.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|.|++|+||+|..  +|..|++|+........                                   ....+.+|+.
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~e~~   51 (267)
T cd06610           7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-----------------------------------SVDELRKEVQ   51 (267)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-----------------------------------HHHHHHHHHH
Confidence            6799999999999998  68999999864321100                                   0112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh--cCCCHHHHHHHHH--HHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAV--ESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~--~g~d~~~la~~lv--~~~L~qI~~~GffHa  452 (760)
                      .+..+    .+...+.+...+ ......+++|||++|.+|.++.....  ..++...+...+.  -..+..+|..|++|+
T Consensus        52 ~l~~l----~~~~i~~~~~~~-~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~  126 (267)
T cd06610          52 AMSQC----NHPNVVKYYTSF-VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHR  126 (267)
T ss_pred             HHHhc----CCCCEEEEEEEE-eeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            44433    222222222222 33456799999999999998764321  2334433333222  233678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||++++  ++.++|+|||++..+........ . ......+...++.++....+ ..+...|++++...+.+++.
T Consensus       127 ~l~p~ni~~~~--~~~~~l~df~~~~~~~~~~~~~~-~-~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~  202 (267)
T cd06610         127 DIKAGNILLGE--DGSVKIADFGVSASLADGGDRTR-K-VRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELAT  202 (267)
T ss_pred             CCCHHhEEEcC--CCCEEEcccchHHHhccCccccc-c-ccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHh
Confidence            99999999986  78999999999887765432210 0 01111234556667666555 56677899999877766553

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.32  E-value=2e-11  Score=127.54  Aligned_cols=182  Identities=14%  Similarity=0.050  Sum_probs=111.6

Q ss_pred             ccccccccEEEEEEE-C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|++|.||+|.. +   +..+++|..+.....                                   +....+.+|.
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------~~~~~~~~E~   46 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASV-----------------------------------QEQMKFLEEA   46 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCCh-----------------------------------HHHHHHHHHH
Confidence            589999999999987 2   467999976553110                                   0111234455


Q ss_pred             HHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc----CCCHHH---HHHHHHHHHHHHHHh
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----GVDRKR---LGRYAVESYLEQILS  446 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~----g~d~~~---la~~lv~~~L~qI~~  446 (760)
                      ..+.++    .+ ++  +++++.  ...+..++||||++|++|.++......    ..+...   ++..++ ..+..+|.
T Consensus        47 ~~l~~l----~h-~~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~-~al~~lH~  118 (269)
T cd05087          47 QPYRSL----QH-SN--LLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIA-LGLLHLHK  118 (269)
T ss_pred             HHHHhC----CC-CC--EeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHH-HHHHHHHH
Confidence            555544    22 22  233332  234567999999999999887542211    112222   222223 34678899


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-------CCCCCCCh
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-------VLVPTGDT  519 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-------~~~~~~D~  519 (760)
                      .|++|+|+||.||++++  ++.++|+|||++..........-    .....+...++++++....       ..+...|+
T Consensus       119 ~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Di  192 (269)
T cd05087         119 NNFIHSDLALRNCLLTA--DLTVKIGDYGLSHNKYKEDYYVT----PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNV  192 (269)
T ss_pred             CCEeccccCcceEEEcC--CCcEEECCccccccccCcceeec----CCCcCCcccccCHhHhccccccccccCCCccchh
Confidence            99999999999999986  78999999998865433211000    0001123456677766421       13567899


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++...+.+++
T Consensus       193 wslG~~l~el~  203 (269)
T cd05087         193 WSLGVTIWELF  203 (269)
T ss_pred             HHHHHHHHHHH
Confidence            99987766654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.32  E-value=1.3e-11  Score=131.12  Aligned_cols=185  Identities=19%  Similarity=0.165  Sum_probs=116.4

Q ss_pred             cccccccccEEEEEEEC------------------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccch
Q 004334          299 EPIAAASLGQVHRARLK------------------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~------------------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l  360 (760)
                      +.||.|++|.||+|...                  +..||||+.+......                             
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~-----------------------------   61 (296)
T cd05095          11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKN-----------------------------   61 (296)
T ss_pred             eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHH-----------------------------
Confidence            57999999999998531                  3468999876532111                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcC----------CC
Q 004334          361 VAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELG----------VD  428 (760)
Q Consensus       361 ~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g----------~d  428 (760)
                            ....+.+|+..+.++.    + ++  +++++.  ......+++|||++|++|.++.......          .+
T Consensus        62 ------~~~~~~~E~~~l~~l~----~-~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  128 (296)
T cd05095          62 ------ARNDFLKEIKIMSRLK----D-PN--IIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTIS  128 (296)
T ss_pred             ------HHHHHHHHHHHHHhCC----C-CC--cceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccC
Confidence                  1122345555555442    2 22  223332  3345679999999999998875432111          11


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          429 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       429 ~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      ...+....  +...+..+|..|++|+|++|.||+++.  ++.++|+|||++..+........    .+.......+++++
T Consensus       129 ~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~~~~pe  202 (296)
T cd05095         129 YSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGK--NYTIKIADFGMSRNLYSGDYYRI----QGRAVLPIRWMSWE  202 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcC--CCCEEeccCcccccccCCcceec----cCcCcCccccCCHH
Confidence            22222222  223478899999999999999999985  78999999999887643321100    00011123455666


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ....+..+...|++++.-.+.+++.
T Consensus       203 ~~~~~~~~~~~DiwSlG~~l~el~~  227 (296)
T cd05095         203 SILLGKFTTASDVWAFGVTLWEILT  227 (296)
T ss_pred             HHhcCCccchhhhhHHHHHHHHHHH
Confidence            6666777788999999988777664

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.32  E-value=2.8e-11  Score=125.39  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=117.8

Q ss_pred             ccccccccEEEEEEE--C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      -||.|++|+||+|+.  +   +..||+|+.+.....                                   .....+.+|
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------~~~~~~~~e   46 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-----------------------------------AGKKEFLRE   46 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccch-----------------------------------HHHHHHHHH
Confidence            489999999999987  2   268999987653211                                   011123344


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHa  452 (760)
                      ...+..+    .+..-+.+...+  .....+++|||++|++|.++..... ..+...+...+.+  ..+..+|..|++|+
T Consensus        47 ~~~l~~l----~h~~iv~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~~~i~H~  119 (257)
T cd05060          47 ASVMAQL----DHPCIVRLIGVC--KGEPLMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLESKHFVHR  119 (257)
T ss_pred             HHHHHhc----CCCCeeeEEEEE--cCCceEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhhcCeecc
Confidence            4444443    222223333322  2456799999999999998764322 2343333333222  23677899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHh--hcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY--EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~--~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||++++  ++.++|+|||++..+......     .....  .....+++++....+..+...|++++.-.+.+++
T Consensus       120 di~p~nili~~--~~~~kl~df~~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  192 (257)
T cd05060         120 DLAARNVLLVN--RHQAKISDFGMSRALGAGSDY-----YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAF  192 (257)
T ss_pred             CcccceEEEcC--CCcEEeccccccceeecCCcc-----cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHH
Confidence            99999999986  789999999999877543321     01101  1123467778777777788899999987766554

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.32  E-value=1.9e-11  Score=126.71  Aligned_cols=188  Identities=14%  Similarity=0.077  Sum_probs=113.8

Q ss_pred             ccccccccEEEEEEE-C----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .||.|++|+||+|.+ +    +..||||.........                                   ....+.+|
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~~~~~~~e   46 (262)
T cd05058           2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLE-----------------------------------EVEQFLKE   46 (262)
T ss_pred             cccccCCceEEEEEEecCCCceEEEEEEecCccCCHH-----------------------------------HHHHHHHH
Confidence            589999999999987 2    3579999753311000                                   00112334


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      ...+..+    .+..-+.+........+..+++|||+.|++|.++............+...  .+-..+..+|..|++|+
T Consensus        47 ~~~l~~l----~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~  122 (262)
T cd05058          47 GIIMKDF----SHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHR  122 (262)
T ss_pred             HHHHccC----CCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            3333322    22222333333333345579999999999999876432222233333222  22334678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||++++  ++.++|+|||++..+..........  .........+++++....+..+...|++++...+.+++
T Consensus       123 dlk~~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  196 (262)
T cd05058         123 DLAARNCMLDE--SFTVKVADFGLARDIYDKEYYSVHN--HTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM  196 (262)
T ss_pred             ccCcceEEEcC--CCcEEECCccccccccCCcceeecc--cccCcCCccccChhHhccCccchHHHHHHHHHHHHHHH
Confidence            99999999986  7899999999988664422110000  00111234566777766566667789999987766654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.32  E-value=2.2e-11  Score=128.85  Aligned_cols=185  Identities=15%  Similarity=0.091  Sum_probs=114.0

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|..+       +..||||.........                              .     ...+
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~------------------------------~-----~~~~   56 (288)
T cd05061          12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR------------------------------E-----RIEF   56 (288)
T ss_pred             eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHH------------------------------H-----HHHH
Confidence            57999999999999752       4589999765321100                              0     0012


Q ss_pred             HHHHHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------CCCHHHHHHHH--HHH
Q 004334          372 YQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA--VES  439 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------g~d~~~la~~l--v~~  439 (760)
                      .+|...+.++     +++++ .+...+ ......+++|||++|++|.++......         ......+...+  +..
T Consensus        57 ~~e~~~l~~l-----~~~~i~~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  130 (288)
T cd05061          57 LNEASVMKGF-----TCHHVVRLLGVV-SKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIAD  130 (288)
T ss_pred             HHHHHHHHhC-----CCCCeeeEEEEE-cCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHH
Confidence            3344444443     12222 222222 334567999999999999987642111         11222222222  223


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      .+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......-    .........+++++...-+..++..|+
T Consensus       131 ~l~~lH~~~i~H~dikp~nili~~--~~~~~L~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~~~~Dv  204 (288)
T cd05061         131 GMAYLNAKKFVHRDLAARNCMVAH--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGVFTTSSDM  204 (288)
T ss_pred             HHHHHHhCCCcCCCCChheEEEcC--CCcEEECcCCccccccccccccc----cCCCcccccccCHHHhccCCCChHhHH
Confidence            467899999999999999999985  78999999999876543221000    000011344667777766777778899


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++.-.+.+++
T Consensus       205 wslG~~l~el~  215 (288)
T cd05061         205 WSFGVVLWEIT  215 (288)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.32  E-value=1.9e-11  Score=125.30  Aligned_cols=159  Identities=17%  Similarity=0.190  Sum_probs=106.2

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+.+++++||+||.+...|++++.+...-        +-+                      |....  ....+.+|++.
T Consensus         7 ~~~l~~~~f~~v~~~~~~~~k~~~~~l~~--------~~~----------------------~~~~~--~~~l~~rE~~i   54 (218)
T PRK12274          7 NEPLKSDTFGRILLVRGGERKFVRRDLSA--------APW----------------------WLRGV--AWWLARREALA   54 (218)
T ss_pred             ceeecCCCcceEEEeecCCceeeeccccc--------chh----------------------hhhhH--HHHHHHHHHHH
Confidence            35799999999998777788777663211        000                      11100  11235678888


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCC-CC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP-HP  456 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDp-HP  456 (760)
                      +.++..      ...+|+++..  ...+++|||++|.+|.+....     ....+... +...++++|..|++|+|+ ||
T Consensus        55 L~~L~~------~~~vP~ll~~--~~~~lvmeyI~G~~L~~~~~~-----~~~~~~~q-i~~~L~~lH~~GIvHrDL~kp  120 (218)
T PRK12274         55 LRQLDG------LPRTPRLLHW--DGRHLDRSYLAGAAMYQRPPR-----GDLAYFRA-ARRLLQQLHRCGVAHNDLAKE  120 (218)
T ss_pred             HHhcCC------CCCCCEEEEE--cCEEEEEeeecCccHHhhhhh-----hhHHHHHH-HHHHHHHHHHCcCccCCCCCc
Confidence            887732      1457888742  567999999999998754211     11222222 334688899999999999 79


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~  509 (760)
                      +||+++.  +|.++|+|||++...++..+     .+.-+...|...+......
T Consensus       121 ~NILv~~--~g~i~LIDFG~A~~~~~~~~-----~~r~L~~rDl~~llk~~~~  166 (218)
T PRK12274        121 ANWLVQE--DGSPAVIDFQLAVRGNPRAR-----WMRLLAREDLRHLLKHKRM  166 (218)
T ss_pred             ceEEEcC--CCCEEEEECCCceecCCcch-----HHHHHHHHHHHHHHHHHHh
Confidence            9999985  78999999999997766443     1112234677778777655

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.32  E-value=3.4e-11  Score=127.37  Aligned_cols=184  Identities=20%  Similarity=0.226  Sum_probs=119.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|.+  +++.||+|+..+....                                   +....+.+|.+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------~~~~~~~~e~~   51 (287)
T cd06621           7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP-----------------------------------DLQKQILRELE   51 (287)
T ss_pred             EEeccCCceEEEEEEECCCCeEEEEEEEecCCch-----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  5899999987653111                                   11123445655


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhh-h--hcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l-~--~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++    .+..-+.+...+... ....+|||||++|.+|.++... .  ........+...+  +-..+..+|..|++
T Consensus        52 ~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~  127 (287)
T cd06621          52 INKSC----KSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKII  127 (287)
T ss_pred             HHHhC----CCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            55544    222223333333222 2356999999999999886432 1  1112322222222  22336788999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|++|.||+++.  ++.++|+|||++..+......        ...++..+++++....+..+...|++++...+.+++
T Consensus       128 H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~  197 (287)
T cd06621         128 HRDIKPSNILLTR--KGQVKLCDFGVSGELVNSLAG--------TFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVA  197 (287)
T ss_pred             cCCCCHHHEEEec--CCeEEEeeccccccccccccc--------cccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHH
Confidence            9999999999986  788999999998766543221        112344556677666666677889999998777665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       198 ~  198 (287)
T cd06621         198 Q  198 (287)
T ss_pred             h
Confidence            4

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.32  E-value=1.9e-11  Score=128.49  Aligned_cols=184  Identities=14%  Similarity=0.133  Sum_probs=112.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||+|+..+....                                     ...+..|..
T Consensus        24 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-------------------------------------~~~~~~e~~   66 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDI-------------------------------------DEEIEAEYN   66 (286)
T ss_pred             eeeccCCCcEEEEEEECCCCceeEEEeeccccch-------------------------------------HHHHHHHHH
Confidence            6899999999999998  5899999986542100                                     011223444


Q ss_pred             HHHHHHHhcCCCCceeeceeee----ccCCCeEEEEeecCCCchhhhhhh--h-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~----e~st~~vLVME~ieG~~L~d~~~l--~-~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++.   .+..-+.+...+.    ......+++|||++|++|.++...  . ....+...+...+  +-..+..+|..
T Consensus        67 ~l~~l~---~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  143 (286)
T cd06638          67 ILKALS---DHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN  143 (286)
T ss_pred             HHHHHh---cCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC
Confidence            344332   1222222222222    122346999999999999886431  1 1122322222221  22346788999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAV  522 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al  522 (760)
                      |++|+|++|+||++++  ++.++|+|||++..+.......      ....++..+++++....     +..+...|++++
T Consensus       144 ~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  215 (286)
T cd06638         144 KTIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSL  215 (286)
T ss_pred             CccccCCCHHhEEECC--CCCEEEccCCceeecccCCCcc------ccccCCCcccChhhhchhhhccccccchhhhhhH
Confidence            9999999999999986  7889999999988775432110      11124455666665532     224567899998


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      .-.+.+++
T Consensus       216 Gvi~~el~  223 (286)
T cd06638         216 GITAIELG  223 (286)
T ss_pred             HHHHHHHh
Confidence            87665543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.32  E-value=2.9e-11  Score=126.17  Aligned_cols=184  Identities=14%  Similarity=0.077  Sum_probs=108.8

Q ss_pred             ccccccccEEEEEEE-C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|++|+||+|.. +   ...|++|..+.....                                   +....+.+|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------~~~~~~~~e~   46 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATP-----------------------------------DEQLLFLQEV   46 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCCh-----------------------------------HHHHHHHHHH
Confidence            489999999999986 3   457888865442111                                   1111233454


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC----CCHHH---HHHHHHHHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----VDRKR---LGRYAVESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g----~d~~~---la~~lv~~~L~qI~~~G  448 (760)
                      ..+..+    .+..-+.+...+ ......+++|||++|++|.++.......    .+...   ++..+ -..+..+|..|
T Consensus        47 ~~~~~l----~h~nii~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi-~~~l~~lH~~~  120 (269)
T cd05042          47 QPYREL----NHPNVLQCLGQC-IESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEV-ASGLLWLHQAD  120 (269)
T ss_pred             HHHHhC----CCCCcceEEEEE-CCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHH-HHHHHHHHhcC
Confidence            444433    222222222222 2345679999999999999875432211    11222   22222 23467899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCChHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTA  521 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-------G~~~~~~D~~a  521 (760)
                      ++|+|+||.||+++.  ++.++++|||++...........    .........++++++...       ...+...|+++
T Consensus       121 ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diws  194 (269)
T cd05042         121 FIHSDLALRNCQLTA--DLSVKIGDYGLALEQYPEDYYIT----KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWS  194 (269)
T ss_pred             EecccccHhheEecC--CCcEEEeccccccccccchheec----cCCCCCcccccCHHHHhhccccccccccchhhHHHH
Confidence            999999999999986  88999999998865433211000    000112234566666542       12355679999


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      +.-.+.+++
T Consensus       195 lG~~l~el~  203 (269)
T cd05042         195 LGVTMWELF  203 (269)
T ss_pred             HHHHHHHHH
Confidence            887766554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.32  E-value=4e-11  Score=128.57  Aligned_cols=193  Identities=18%  Similarity=0.193  Sum_probs=121.5

Q ss_pred             hCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       285 lG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      +...++..|..  ...+|.|++|+||+|+.  +|+.|+||.....-...                               
T Consensus         9 ~~~~~~~~~~~--~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~-------------------------------   55 (308)
T cd06634           9 FKDDPEKLFSD--LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-------------------------------   55 (308)
T ss_pred             hcCCcHHHHHH--HHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccC-------------------------------
Confidence            34445555553  35799999999999998  58999999765421000                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  440 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~  440 (760)
                        .+....+.+|...+..+    .+...+.+...+ ......++||||+.| ++.++.......++...+...+.  -..
T Consensus        56 --~~~~~~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~~l~~~  127 (308)
T cd06634          56 --NEKWQDIIKEVRFLQKL----RHPNTIQYRGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVTHGALQG  127 (308)
T ss_pred             --hHHHHHHHHHHHHHHhC----CCCCcccEEEEE-EcCCeeEEEEEccCC-CHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence              00111233455545444    222223333322 234567999999986 56655433333344444443322  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCC
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTG  517 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~  517 (760)
                      +..+|..|++|+|++|.||+++.  ++.+++.|||++..+.+...          ..++..+++++...   .+..+...
T Consensus       128 l~~LH~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~~  195 (308)
T cd06634         128 LAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANX----------FVGTPYWMAPEVILAMDEGQYDGKV  195 (308)
T ss_pred             HHHHHhCCcccCCCCHHhEEECC--CCcEEECCcccceeecCccc----------ccCCccccCHHHHhhcccCCCCccc
Confidence            68889999999999999999985  78999999999887665321          12344566666653   24456678


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |+++++..+.+++
T Consensus       196 Di~slG~il~el~  208 (308)
T cd06634         196 DVWSLGITCIELA  208 (308)
T ss_pred             chHHHHHHHHHHH
Confidence            9999987766554

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.32  E-value=2e-11  Score=129.04  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||.|+.     +|+.||+|+.+......                                .....+.+.+
T Consensus         6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~--------------------------------~~~~~~~~~~   53 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ--------------------------------KAKTTEHTRT   53 (290)
T ss_pred             eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh--------------------------------cchHHHHHHH
Confidence            4689999999999987     58999999865421100                                0011122334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |.+.+.++.    +++.+.-.....+.....+++|||++|++|.+..... .......+...+  +...+..+|..|++|
T Consensus        54 e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~~~i~H  128 (290)
T cd05613          54 ERQVLEHIR----QSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHKLGIIY  128 (290)
T ss_pred             HHHHHHhcc----cCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            555555442    2232221111222334568999999999998865322 223444443332  334478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~  529 (760)
                      +|++|.||+++.  +++++|+|||++..+.........     ...+...+++++...-+  ......|++++...+.++
T Consensus       129 ~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~l  201 (290)
T cd05613         129 RDIKLENILLDS--NGHVVLTDFGLSKEFHEDEVERAY-----SFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYEL  201 (290)
T ss_pred             cCCCHHHeEECC--CCCEEEeeCccceecccccccccc-----cccCCcccCChhhccCCCCCCCccccHHHHHHHHHHH
Confidence            999999999985  789999999999877543211110     11234445666655432  245678999998776655


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       202 l  202 (290)
T cd05613         202 L  202 (290)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.32  E-value=2.3e-11  Score=128.23  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceec
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~  479 (760)
                      ...+++|||++|++|.++........+...+....  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~--~~~~kl~Dfg~~~~  158 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKS--DSIVQIADFGVADL  158 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcC--CCcEEEcCCcccee
Confidence            45689999999999998765433334444333322  223477899999999999999999985  78999999999987


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          480 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       480 l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +.+......    .....+...+++++....+..+...|++++.-.+.+++
T Consensus       159 ~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~  205 (279)
T cd05111         159 LYPDDKKYF----YSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMM  205 (279)
T ss_pred             ccCCCcccc----cCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHH
Confidence            754432211    11112334566777777777788899999987776654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.32  E-value=1.4e-11  Score=139.72  Aligned_cols=181  Identities=16%  Similarity=0.143  Sum_probs=110.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||....... .                                       ..+|..
T Consensus        72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~-~---------------------------------------~~~Ei~  111 (440)
T PTZ00036         72 NIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQ-Y---------------------------------------KNRELL  111 (440)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEecCcc-h---------------------------------------HHHHHH
Confidence            5799999999999998  589999997643210 0                                       012333


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-----CC--CeEEEEeecCCCchhhhhh-h--hhcCCCHHHHHHH--HHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-----TT--PQILTMEYVPGIKINRIQS-L--DELGVDRKRLGRY--AVESYLEQI  444 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-----st--~~vLVME~ieG~~L~d~~~-l--~~~g~d~~~la~~--lv~~~L~qI  444 (760)
                      .+..+    .+..-+.+...|...     ..  -.++||||++|. +.++.. .  ....+....+...  .+-..+..+
T Consensus       112 il~~l----~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yL  186 (440)
T PTZ00036        112 IMKNL----NHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQT-VHKYMKHYARNNHALPLFLVKLYSYQLCRALAYI  186 (440)
T ss_pred             HHHhc----CCCCCcceeeeEeecccccCCCceEEEEEEecCCcc-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            33333    222223333332211     11  246899999974 444322 1  1122332222221  223347889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  523 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~  523 (760)
                      |..|++|+|+||.||+++. .++.++|+|||++..+.......       -..+++.++++++..- ...+...|+++++
T Consensus       187 H~~~IiHrDLKp~NILl~~-~~~~vkL~DFGla~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG  258 (440)
T PTZ00036        187 HSKFICHRDLKPQNLLIDP-NTHTLKLCDFGSAKNLLAGQRSV-------SYICSRFYRAPELMLGATNYTTHIDLWSLG  258 (440)
T ss_pred             HHCCEecCCcCHHHEEEcC-CCCceeeeccccchhccCCCCcc-------cCCCCcCccCHHHhcCCCCCCcHHHHHHHH
Confidence            9999999999999999985 34579999999998775432210       0123556778887643 2356678999999


Q ss_pred             HHHHHHHHH
Q 004334          524 RTAQFFLNS  532 (760)
Q Consensus       524 ~~~~~~l~~  532 (760)
                      -.+.+++..
T Consensus       259 vil~elltG  267 (440)
T PTZ00036        259 CIIAEMILG  267 (440)
T ss_pred             HHHHHHHhC
Confidence            887776643

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.31  E-value=2.6e-11  Score=129.72  Aligned_cols=182  Identities=19%  Similarity=0.189  Sum_probs=114.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|.||+|+.  +|+.||+|+........                                 .+....+.+|..
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~---------------------------------~~~~~~~~~Ei~   67 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS---------------------------------NEKWQDIIKEVR   67 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCc---------------------------------HHHHHHHHHHHH
Confidence            5699999999999998  58999999864321100                                 011122344544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+..++. .....++||||++|. +.++........+...+...+  +-..+..+|..|++|+|+
T Consensus        68 ~l~~l----~h~niv~~~~~~~-~~~~~~lv~e~~~g~-l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl  141 (307)
T cd06607          68 FLQQL----RHPNTIEYKGCYL-REHTAWLVMEYCLGS-ASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDI  141 (307)
T ss_pred             HHHhC----CCCCEEEEEEEEE-eCCeEEEEHHhhCCC-HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            44443    2333334443332 345679999999874 444332222233444333222  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||++++  ++.++|.|||++...++...          ..+.+.+++++...   .+..++..|+++++..+.+++.
T Consensus       142 ~p~nIl~~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~t  209 (307)
T cd06607         142 KAGNILLTE--PGTVKLADFGSASLVSPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE  209 (307)
T ss_pred             CcccEEECC--CCCEEEeecCcceecCCCCC----------ccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHc
Confidence            999999986  78999999999887654321          12344556666542   2445667899999877766543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.31  E-value=2.9e-11  Score=135.85  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      .+..+|..|++|+|++|.||++++  ++.++|+|||++..+........    .........+++++....+...+..|+
T Consensus       251 aL~~LH~~~ivHrdlkp~NiLl~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv  324 (401)
T cd05107         251 GMEFLASKNCVHRDLAARNVLICE--GKLVKICDFGLARDIMRDSNYIS----KGSTFLPLKWMAPESIFNNLYTTLSDV  324 (401)
T ss_pred             HHHHHhcCCcCcccCCcceEEEeC--CCEEEEEecCcceeccccccccc----CCCcCCCCceeChHHhcCCCCCcHhHH
Confidence            467899999999999999999985  78999999999986543211000    000112345667777776767778899


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++...+.+++
T Consensus       325 wslGvil~e~l  335 (401)
T cd05107         325 WSFGILLWEIF  335 (401)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.31  E-value=1.2e-11  Score=132.13  Aligned_cols=190  Identities=14%  Similarity=0.123  Sum_probs=114.0

Q ss_pred             cCccccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ++...||.|++|.||+|+.    ++..||+|..++.-.                                      ...+
T Consensus         4 ~~g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~--------------------------------------~~~~   45 (317)
T cd07867           4 YEGCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI--------------------------------------SMSA   45 (317)
T ss_pred             eeceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC--------------------------------------cHHH
Confidence            3446799999999999997    257899997654210                                      0012


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhh--------cCCCHHHHHHHH--HHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE--------LGVDRKRLGRYA--VESY  440 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~--------~g~d~~~la~~l--v~~~  440 (760)
                      .+|+..+.++    .+..-+.+..++... ....+++|||++| .+.++.....        ..+....+...+  +-..
T Consensus        46 ~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a  120 (317)
T cd07867          46 CREIALLREL----KHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDG  120 (317)
T ss_pred             HHHHHHHHhC----CCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHH
Confidence            3454444444    233334444444322 3446899999987 4444332110        112222222221  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEec--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCC
Q 004334          441 LEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTG  517 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~  517 (760)
                      +..+|..|++|+|+||.||++..  ..++.++|+|||++..+....... ..  ..-..++..+++++...- ...+...
T Consensus       121 L~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~-~~--~~~~~~t~~y~aPE~~~~~~~~~~~~  197 (317)
T cd07867         121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL-AD--LDPVVVTFWYRAPELLLGARHYTKAI  197 (317)
T ss_pred             HHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccc-cc--cCcceecccccCcHHhcCCCccCcHH
Confidence            77899999999999999999942  135789999999998775432210 00  001123455677776643 3356678


Q ss_pred             ChHHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFLN  531 (760)
Q Consensus       518 D~~al~~~~~~~l~  531 (760)
                      |++++...+.+++.
T Consensus       198 DiwSlG~il~el~t  211 (317)
T cd07867         198 DIWAIGCIFAELLT  211 (317)
T ss_pred             HHHhHHHHHHHHHh
Confidence            99999988776654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.31  E-value=2.6e-11  Score=128.18  Aligned_cols=187  Identities=20%  Similarity=0.196  Sum_probs=119.5

Q ss_pred             cccccccccEEEEEEEC--C----------------eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccch
Q 004334          299 EPIAAASLGQVHRARLK--G----------------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G----------------~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l  360 (760)
                      +.||.|++|.||+|+..  +                ..||+|+.+.+...                              
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~------------------------------   60 (296)
T cd05051          11 EKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD------------------------------   60 (296)
T ss_pred             ccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH------------------------------
Confidence            57999999999999872  1                45899987654221                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh----------cCCCHH
Q 004334          361 VAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE----------LGVDRK  430 (760)
Q Consensus       361 ~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~----------~g~d~~  430 (760)
                           +....+.+|++.+.++.    +..-+.+...+ ......+++|||++|.+|.++.....          ...+..
T Consensus        61 -----~~~~~~~~e~~~l~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  130 (296)
T cd05051          61 -----NAREDFLKEVKILSRLS----DPNIARLLGVC-TVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFS  130 (296)
T ss_pred             -----HHHHHHHHHHHHHHhcC----CCCEeEEEEEE-ecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHH
Confidence                 11122344555555442    22223333222 23356799999999999988653221          023333


Q ss_pred             HHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004334          431 RLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       431 ~la~~lv--~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~  508 (760)
                      .+...+.  -..+..+|..|++|+|++|.||+++.  ++.++|+|||++..+........    .........+++++..
T Consensus       131 ~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~  204 (296)
T cd05051         131 TLLYMATQIASGMRYLESLNFVHRDLATRNCLVGK--NYTIKIADFGMSRNLYSSDYYRV----QGRAPLPIRWMAWESV  204 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccccccchhceeecC--CCceEEccccceeecccCcceee----cCcCCCCceecCHHHh
Confidence            3333322  23367889999999999999999986  78999999999876643321110    0111223457778877


Q ss_pred             HcCCCCCCCChHHHHHHHHHHHH
Q 004334          509 QMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       509 ~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..+..++..|++++.-.+.+++.
T Consensus       205 ~~~~~~~~~Dv~slG~~l~el~~  227 (296)
T cd05051         205 LLGKFTTKSDVWAFGVTLWEILT  227 (296)
T ss_pred             hcCCCCccchhhhhHHHHHHHHh
Confidence            77777888999999877766543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.31  E-value=1.3e-11  Score=130.79  Aligned_cols=188  Identities=16%  Similarity=0.133  Sum_probs=117.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.|+||..+......                               ..++....+.+|..
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~-------------------------------~~~~~~~~~~~e~~   54 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKE-------------------------------AKDGINFTALREIK   54 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEecccccc-------------------------------ccchhhHHHHHHHH
Confidence            4699999999999998  58999999876632110                               00111223344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+...+.+ ....++||||+ +++|.++.......++...+...+  +-..+..+|.+|++|+|+
T Consensus        55 ~l~~~~----h~~i~~~~~~~~~-~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl  128 (298)
T cd07841          55 LLQELK----HPNIIGLLDVFGH-KSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDL  128 (298)
T ss_pred             HHhhcC----CCCChhhhheeec-CCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCC
Confidence            555442    2222333333322 45679999999 888888754322124444333322  223477899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||++..+.......-      ....+..+++++.... ...+...|+++++-.+.+++.
T Consensus       129 ~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~  198 (298)
T cd07841         129 KPNNLLIAS--DGVLKLADFGLARSFGSPNRKMT------HQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLL  198 (298)
T ss_pred             ChhhEEEcC--CCCEEEccceeeeeccCCCcccc------ccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHc
Confidence            999999986  88999999999987754321100      0012334555665532 334566899999877766654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.31  E-value=7.5e-12  Score=131.43  Aligned_cols=185  Identities=17%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|.||+|+.  +|+.||+|+.+......                                  +....+.+|..
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~----------------------------------~~~~~~~~ei~   51 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPSSALREIC   51 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccc----------------------------------cCccchhHHHH
Confidence            5699999999999999  69999999865421110                                  00011223444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +...+.+...+ ......+++|||++| ++.+.........+...+....  +-..+..+|..|++|+|+
T Consensus        52 ~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl  125 (284)
T cd07839          52 LLKELK----HKNIVRLYDVL-HSDKKLTLVFEYCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDL  125 (284)
T ss_pred             HHHhcC----CCCeeeHHHHh-ccCCceEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCC
Confidence            444331    11112211222 234567999999987 5555432222234444433332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++..+....+..      ....++..++++++...+ ..++..|+++++-.+.+++.
T Consensus       126 ~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~t  195 (284)
T cd07839         126 KPQNLLINK--NGELKLADFGLARAFGIPVRCY------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELAN  195 (284)
T ss_pred             CHHHEEEcC--CCcEEECccchhhccCCCCCCc------CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHh
Confidence            999999985  7899999999987664332110      001123445666665432 34667899999877776653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.31  E-value=4e-11  Score=125.99  Aligned_cols=172  Identities=16%  Similarity=0.159  Sum_probs=115.1

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +|.|++|+||+++.  +|+.+|+|+..+.....                                 .|.        . .
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---------------------------------~e~--------~-~   61 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA---------------------------------IEP--------M-V   61 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcch---------------------------------hhH--------H-H
Confidence            69999999999998  58999999865521000                                 000        0 0


Q ss_pred             HHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpH  455 (760)
                      ..+   ..++++ +.+...+. .....++||||++|++|.++..... .++...+...+.+  ..+..+|..|++|+|++
T Consensus        62 ~~~---~~~h~~iv~~~~~~~-~~~~~~iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  136 (267)
T PHA03390         62 HQL---MKDNPNFIKLYYSVT-TLKGHVLIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIK  136 (267)
T ss_pred             HHH---hhcCCCEEEEEEEEe-cCCeeEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            000   112222 33333332 2346799999999999988764332 3444444333322  33688999999999999


Q ss_pred             CCcEEEeccCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g-~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  ++ +++++|||++..++....          ..+...+++++....+..++..|++++...+.+++.
T Consensus       137 p~nil~~~--~~~~~~l~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~  201 (267)
T PHA03390        137 LENVLYDR--AKDRIYLCDYGLCKIIGTPSC----------YDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLT  201 (267)
T ss_pred             HHHEEEeC--CCCeEEEecCccceecCCCcc----------CCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHH
Confidence            99999986  55 899999999987765421          234566777887776666778899999877766654

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.31  E-value=1.9e-11  Score=126.40  Aligned_cols=186  Identities=19%  Similarity=0.185  Sum_probs=118.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|..  +|+.|+||+.+.....                                  .+....+.+|..
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~~   51 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND----------------------------------PKTIKEIADEMK   51 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccc----------------------------------hHHHHHHHHHHH
Confidence            6899999999999998  6899999997653211                                  011122344444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~GffH  451 (760)
                      .+.++.     +++  +.+++.  ......++||||++|.+|.++..... ..+...+   +..++ ..+..+|..|++|
T Consensus        52 ~~~~l~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~-~~l~~lh~~~i~H  122 (264)
T cd06626          52 VLELLK-----HPN--LVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLL-EGLAYLHSHGIVH  122 (264)
T ss_pred             HHHhCC-----CCC--hhheeeeEecCCEEEEEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHH-HHHHHHHHCCccc
Confidence            444442     222  222222  23456799999999999998764321 1222222   22223 3367889999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCChHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRTAQF  528 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~---~~~~~D~~al~~~~~~  528 (760)
                      +|++|+||++++  ++.++|+|||.+..+....... ...+. ...+...++.++....+.   .....|++++...+.+
T Consensus       123 ~dl~~~nil~~~--~~~~kl~d~g~~~~~~~~~~~~-~~~~~-~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~  198 (264)
T cd06626         123 RDIKPANIFLDH--NGVIKLGDFGCAVKLKNNTTTM-GEEVQ-SLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE  198 (264)
T ss_pred             CCCCHHHEEECC--CCCEEEcccccccccCCCCCcc-ccccc-CCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHH
Confidence            999999999986  7899999999998876543211 00000 122345566667665444   5667899999877766


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       199 l~~  201 (264)
T cd06626         199 MAT  201 (264)
T ss_pred             HHh
Confidence            553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.30  E-value=2.7e-11  Score=124.70  Aligned_cols=187  Identities=16%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|+|++|.||+|..  +|+.||+|+........                                  +-...+.+|..
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------~~~~~~~~e~~   51 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTE----------------------------------KEKQQLVSEVN   51 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCH----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  68999999865421110                                  00112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHH-----
Q 004334          377 NAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQIL-----  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~-----  445 (760)
                      .+.++.    +..-+.+...+. ......+++|||++|.+|.++....   ...++...+....  +...+..+|     
T Consensus        52 ~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~  127 (265)
T cd08217          52 ILRELK----HPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDP  127 (265)
T ss_pred             HHHhcC----CCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccc
Confidence            444442    211122222221 1223458999999999998875422   1223333333322  223367788     


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      ..|++|+|+||+||+++.  ++.++++|||++..+......  .    .-..+...+++++....+..+...|++++...
T Consensus       128 ~~~i~h~dl~p~nili~~--~~~~kl~d~g~~~~~~~~~~~--~----~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~i  199 (265)
T cd08217         128 GNTVLHRDLKPANIFLDA--NNNVKLGDFGLAKILGHDSSF--A----KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCL  199 (265)
T ss_pred             cCcceecCCCHHHEEEec--CCCEEEecccccccccCCccc--c----cccccCCCccChhhhcCCCCCchhHHHHHHHH
Confidence            889999999999999985  789999999999887654310  0    00124555677777766666777899999877


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       200 l~~l~~  205 (265)
T cd08217         200 IYELCA  205 (265)
T ss_pred             HHHHHH
Confidence            766553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.30  E-value=1.8e-11  Score=127.42  Aligned_cols=185  Identities=18%  Similarity=0.092  Sum_probs=116.2

Q ss_pred             ccccccccEEEEEEEC--------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARLK--------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       300 PIasaSiGQVhrA~l~--------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .||.|++|.||+|+..        ++.|+||....+...                                   +....+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------~~~~~~   46 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATD-----------------------------------QEKKEF   46 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccch-----------------------------------hhHHHH
Confidence            6899999999999872        267999975442110                                   001123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh------cCCCHHHHHHHH--HHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~------~g~d~~~la~~l--v~~~L~q  443 (760)
                      .+|+..+..+     +++++.-..-+.......+++|||++|++|.++.....      ...+...+....  +-..+..
T Consensus        47 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  121 (269)
T cd05044          47 LKEAHLMSNF-----NHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVY  121 (269)
T ss_pred             HHHHHHHHhc-----CCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHH
Confidence            3455555444     22333222222233456799999999999988653211      112333333222  2233678


Q ss_pred             HHhCCccccCCCCCcEEEeccCCC-----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGG-----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g-----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      +|..|++|+|++|.||++++  ++     .++++|||++..+........    .+.......+++++...-+..++..|
T Consensus       122 lH~~~i~H~dl~p~nil~~~--~~~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  195 (269)
T cd05044         122 LEQMHFIHRDLAARNCLVSE--KGYDADRVVKIGDFGLARDIYKSDYYRK----EGEGLLPVRWMAPESLLDGKFTTQSD  195 (269)
T ss_pred             HHhCCcccCCCChheEEEec--CCCCCCcceEECCccccccccccccccc----CcccCCCccccCHHHHccCCcccchh
Confidence            99999999999999999985  44     799999999987643321000    01111234567788777788888899


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++.-.+.+++
T Consensus       196 v~slG~il~ell  207 (269)
T cd05044         196 VWSFGVLMWEIL  207 (269)
T ss_pred             HHHHHHHHHHHH
Confidence            999988777665

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.30  E-value=2.2e-11  Score=130.27  Aligned_cols=188  Identities=15%  Similarity=0.113  Sum_probs=116.7

Q ss_pred             ccccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      .++||.|++|.||+|+..         +..||+|+.++.....                                  + .
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~-~   67 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEK----------------------------------D-L   67 (307)
T ss_pred             eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChH----------------------------------H-H
Confidence            368999999999999862         2469999887642111                                  0 0


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLG  433 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la  433 (760)
                      ..+.+|...+.++.   .+..-+.+...+ ......+++|||++|++|.++.....               ...+...+.
T Consensus        68 ~~~~~e~~~l~~l~---~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~  143 (307)
T cd05098          68 SDLISEMEMMKMIG---KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLV  143 (307)
T ss_pred             HHHHHHHHHHHHhc---CCCCEeeEEEEE-ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHH
Confidence            11233444444331   122223333333 33456799999999999998764321               112333333


Q ss_pred             HHHH--HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004334          434 RYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  511 (760)
Q Consensus       434 ~~lv--~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG  511 (760)
                      ....  -..+..+|..|++|+|+||.||++++  ++.++|+|||.+..+........  .  ........+++++....+
T Consensus       144 ~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~a~~~~~~~~~~~--~--~~~~~~~~y~aPE~~~~~  217 (307)
T cd05098         144 SCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK--T--TNGRLPVKWMAPEALFDR  217 (307)
T ss_pred             HHHHHHHHHHHHHHHCCcccccccHHheEEcC--CCcEEECCCcccccccccchhhc--c--ccCCCccceeChHHhccC
Confidence            3222  23478899999999999999999985  78999999999876643211100  0  000112346677776666


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 004334          512 VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       512 ~~~~~~D~~al~~~~~~~l  530 (760)
                      ..+...|++++.-.+.+++
T Consensus       218 ~~~~~~DvwslG~~l~el~  236 (307)
T cd05098         218 IYTHQSDVWSFGVLLWEIF  236 (307)
T ss_pred             CCCcHHHHHHHHHHHHHHH
Confidence            6677889999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.30  E-value=3.1e-11  Score=125.70  Aligned_cols=190  Identities=16%  Similarity=0.063  Sum_probs=118.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.|+||+.+......                           ..    .+....+.+|+.
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------~~----~~~~~~~~~E~~   56 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESP---------------------------ET----SKEVNALECEIQ   56 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCc---------------------------cc----HHHHHHHHHHHH
Confidence            5799999999999998  58999999865421110                           00    011123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +..-+.+...+.+. ....+++|||++|++|.++.... ...+...   ++..+ ...+..+|..|++|+
T Consensus        57 ~l~~l~----h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l-~~~l~~lH~~~i~H~  130 (265)
T cd06652          57 LLKNLL----HERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY-GALTENVTRKYTRQI-LEGVSYLHSNMIVHR  130 (265)
T ss_pred             HHHhcC----CCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHH-HHHHHHHHhCCEecC
Confidence            666652    22112222222111 23457999999999998865322 1123222   22222 234678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||++++  ++.++|+|||+...+....... ..  .....+...+++++.......++..|++++...+.+++
T Consensus       131 dl~p~nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  203 (265)
T cd06652         131 DIKGANILRDS--VGNVKLGDFGASKRLQTICLSG-TG--MKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEML  203 (265)
T ss_pred             CCCHHHEEecC--CCCEEECcCccccccccccccc-cc--cccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHh
Confidence            99999999985  8899999999987664321100 00  00012344566777766555677889999987776654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.30  E-value=2.7e-11  Score=129.72  Aligned_cols=188  Identities=15%  Similarity=0.102  Sum_probs=121.1

Q ss_pred             ccccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      .+.||.|++|+||+|+.       .+..||||+.+......                                   ....
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~   84 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSS-----------------------------------EREA   84 (302)
T ss_pred             cceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChH-----------------------------------HHHH
Confidence            36899999999999975       24689999876532111                                   1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      +.+|...+.++.   .+..-+.+...+ ......+++|||+.|++|.++...... ..+...+....  +...+..+|..
T Consensus        85 ~~~E~~~l~~l~---~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~  160 (302)
T cd05055          85 LMSELKIMSHLG---NHENIVNLLGAC-TIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK  160 (302)
T ss_pred             HHHHHHHHHhcc---CCCCcceEEEEE-ecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            445555555542   122222333322 334567999999999999887643221 13444333322  22346889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      |++|+|++|.||++++  ++.++++|||++..+........    .+.......+++++....+..++..|++++.-.+.
T Consensus       161 ~ivH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~  234 (302)
T cd05055         161 NCIHRDLAARNVLLTH--GKIVKICDFGLARDIMNDSNYVV----KGNARLPVKWMAPESIFNCVYTFESDVWSYGILLW  234 (302)
T ss_pred             CeehhhhccceEEEcC--CCeEEECCCcccccccCCCceee----cCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHH
Confidence            9999999999999985  78899999999887654321100    01112234567788777777777889999987766


Q ss_pred             HHH
Q 004334          528 FFL  530 (760)
Q Consensus       528 ~~l  530 (760)
                      +++
T Consensus       235 el~  237 (302)
T cd05055         235 EIF  237 (302)
T ss_pred             HHH
Confidence            554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.30  E-value=2.3e-11  Score=129.53  Aligned_cols=182  Identities=18%  Similarity=0.162  Sum_probs=117.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|+|++|.||++..  +|+.|++|+....-..                                    ....+.+|..
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~------------------------------------~~~~~~~e~~   68 (293)
T cd06647          25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQP------------------------------------KKELIINEIL   68 (293)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeccccch------------------------------------HHHHHHHHHH
Confidence            6899999999999987  6889999975321000                                    0012233443


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    . ++++.-..-+.......++||||++|++|.++....  ..+...+...+  +-..+..+|..|++|+|+
T Consensus        69 ~l~~l----~-hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL  141 (293)
T cd06647          69 VMREN----K-HPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRDI  141 (293)
T ss_pred             HHhhc----C-CCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCEeeccC
Confidence            33332    2 232221111222345689999999999998875322  23333322222  223467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||+...+.+.....      ....+...++++++...+..++..|++++...+.+++.
T Consensus       142 ~p~Nili~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~  210 (293)
T cd06647         142 KSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE  210 (293)
T ss_pred             CHHHEEEcC--CCCEEEccCcceeccccccccc------ccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHh
Confidence            999999985  7899999999887776543211      11124445667777766666778899999877766553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.30  E-value=1.6e-11  Score=129.68  Aligned_cols=184  Identities=15%  Similarity=0.079  Sum_probs=113.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|+.  +|+.||||..++......                                   .....+|..
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~-----------------------------------~~~~~~E~~   55 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGA-----------------------------------PFTAIREAS   55 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCC-----------------------------------chhHHHHHH
Confidence            6899999999999998  589999998765321100                                   001124555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    . ++++.-..-+.......++||||++| +|.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus        56 ~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl  129 (291)
T cd07844          56 LLKDL----K-HANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDL  129 (291)
T ss_pred             HHhhC----C-CcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccC
Confidence            55544    2 23322222222334567999999997 7776543322234444333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||.+.......... ..     ......++++++... ...+...|+++++..+.+++.
T Consensus       130 ~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-~~-----~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~  199 (291)
T cd07844         130 KPQNLLISE--RGELKLADFGLARAKSVPSKTY-SN-----EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMAT  199 (291)
T ss_pred             CHHHEEEcC--CCCEEECccccccccCCCCccc-cc-----cccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHh
Confidence            999999986  7899999999987653221110 00     011233445554432 334566799999877766653

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.30  E-value=5e-11  Score=124.79  Aligned_cols=182  Identities=15%  Similarity=0.145  Sum_probs=112.5

Q ss_pred             ccccccccEEEEEEE--CCe--eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~--~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+|.|++|.||+|++  +|.  .|++|..+.....                                   +....+.+|.
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------~~~~~~~~E~   46 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK-----------------------------------DDHRDFAGEL   46 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCH-----------------------------------HHHHHHHHHH
Confidence            689999999999998  354  5678865532111                                   1111234455


Q ss_pred             HHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH--H
Q 004334          376 ANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA--V  437 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l--v  437 (760)
                      ..+.++.    +++++ .+...+ ......+++|||++|++|.++.....               ..+....+...+  +
T Consensus        47 ~~l~~l~----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i  121 (270)
T cd05047          47 EVLCKLG----HHPNIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV  121 (270)
T ss_pred             HHHHhhc----cCCCeeeEEEEE-ecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHH
Confidence            5555542    23332 222222 23345799999999999988753211               012223322222  2


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  517 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~  517 (760)
                      -..+..+|..|++|+|++|.||+++.  ++.++++|||++..........       .......+++++.......+...
T Consensus       122 ~~al~~lH~~~i~H~dikp~nili~~--~~~~kl~dfgl~~~~~~~~~~~-------~~~~~~~y~apE~~~~~~~~~~~  192 (270)
T cd05047         122 ARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLNYSVYTTNS  192 (270)
T ss_pred             HHHHHHHHHCCEeecccccceEEEcC--CCeEEECCCCCccccchhhhcc-------CCCCccccCChHHHccCCCCchh
Confidence            23478899999999999999999985  7899999999875432211110       01112346677776666667788


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |++++.-.+.+++
T Consensus       193 Di~slG~il~el~  205 (270)
T cd05047         193 DVWSYGVLLWEIV  205 (270)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999987766654

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.29  E-value=2.6e-11  Score=125.64  Aligned_cols=183  Identities=12%  Similarity=0.071  Sum_probs=116.2

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.. +++.|++|+........                                    ...+..|...
T Consensus        12 ~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~------------------------------------~~~~~~e~~~   55 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLK------------------------------------QQDFQKEVQA   55 (261)
T ss_pred             hhhccCCCccEEEeEecCCCcEEEEeccccchhh------------------------------------HHHHHHHHHH
Confidence            5789999999999999 68999999865421100                                    0112234433


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +..+    .+...+.+... .......+++|||++|++|.++..... ...+...+...+  +-..+..+|..|++|+|+
T Consensus        56 l~~l----~~~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl  130 (261)
T cd05148          56 LKRL----RHKHLISLFAV-CSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDL  130 (261)
T ss_pred             HhcC----CCcchhheeee-EecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecccc
Confidence            3333    12111222222 233456799999999999998764322 123333333222  223367889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||++++  ++.++++|||.+..+.......      .-......+++++....+......|++++...+.+++
T Consensus       131 ~~~nilv~~--~~~~kl~d~g~~~~~~~~~~~~------~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~  198 (261)
T cd05148         131 AARNILVGE--DLVCKVADFGLARLIKEDVYLS------SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMF  198 (261)
T ss_pred             CcceEEEcC--CceEEEccccchhhcCCccccc------cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            999999986  7899999999998775432110      0011223456677666666777889999987766654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.29  E-value=2.7e-11  Score=127.05  Aligned_cols=182  Identities=13%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+....+.                                   ....+.+|+.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-----------------------------------~~~~~~~E~~   50 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG-----------------------------------TPSTAIREIS   50 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEEEEeccccccc-----------------------------------chHHHHHHHH
Confidence            6799999999999999  59999999876532110                                   0011234555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh--cCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~--~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++.     +++  +++++.  ......+|||||++| .+.++.....  ..++...+...+  +-..+..+|..|++
T Consensus        51 ~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~  122 (284)
T cd07836          51 LMKELK-----HEN--IVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVL  122 (284)
T ss_pred             HHHhhc-----CCC--EeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            555552     232  233332  334567999999997 6666543211  223444333322  22346788999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~  529 (760)
                      |+|++|.||++++  ++.++++|||++..+.........      ...+..++.++....+ ......|++++...+.++
T Consensus       123 h~dl~p~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~~~------~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l  194 (284)
T cd07836         123 HRDLKPQNLLINK--RGELKLADFGLARAFGIPVNTFSN------EVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEM  194 (284)
T ss_pred             eCCCCHHHEEECC--CCcEEEeecchhhhhcCCcccccc------ccccccccChHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence            9999999999985  789999999998766433211000      0123344555554332 235567888888766655


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       195 ~~  196 (284)
T cd07836         195 IT  196 (284)
T ss_pred             Hh
Confidence            43

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.29  E-value=1.9e-11  Score=133.14  Aligned_cols=190  Identities=17%  Similarity=0.176  Sum_probs=124.4

Q ss_pred             cccccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-+|.|.+|.||.|+++  +...|+||.....-   ...                             +.+ ....-|..
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l---~~r-----------------------------kKl-~Ra~tE~e  129 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESL---ASR-----------------------------KKL-KRAQTERE  129 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHHHH---hhh-----------------------------hHH-HHHHHHHH
Confidence            57999999999999995  58999999654210   000                             000 00112222


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCe--EEEEeecCCCchhhhhhhhhcC---CCHHHHHHHHHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQ--ILTMEYVPGIKINRIQSLDELG---VDRKRLGRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~--vLVME~ieG~~L~d~~~l~~~g---~d~~~la~~lv~~~L~qI~~~GffH  451 (760)
                      .+..       .++-.+|..|..+.+..  +|+||||+|+.|..+.+-....   .+..+.-..-+-..|+++|-.||+.
T Consensus       130 IL~~-------lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivY  202 (459)
T KOG0610|consen  130 ILSL-------LDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVY  202 (459)
T ss_pred             HHHh-------cCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceee
Confidence            3332       23456888898887765  8999999999998865432221   1222222333445689999999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccCh--hhHH------------------------HH-H-H-------------
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISP--NIRE------------------------GL-L-E-------------  490 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~--~~r~------------------------~l-~-~-------------  490 (760)
                      ||+||+||||.+  +|.|.|.||-+..+.+-  ....                        .+ . .             
T Consensus       203 RDLKPENILvre--dGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~  280 (459)
T KOG0610|consen  203 RDLKPENILVRE--DGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSL  280 (459)
T ss_pred             ccCCcceeEEec--CCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccc
Confidence            999999999996  99999999998755421  0000                        00 0 0             


Q ss_pred             -HHHH--------HhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          491 -AFYG--------IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       491 -l~~a--------l~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                       .+.|        -+-++-++++++++.-.-....+|-|+++..+++|+
T Consensus       281 p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmL  329 (459)
T KOG0610|consen  281 PELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEML  329 (459)
T ss_pred             hhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHH
Confidence             0111        123567888888888777777889999998777765

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.29  E-value=1.3e-11  Score=144.30  Aligned_cols=123  Identities=16%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             CCCeEEEEeecCCCchhhhhhhhhcCC-----------------CH-H----HHHHHHHHHHHHHHHhCCccccCCCCCc
Q 004334          401 TTPQILTMEYVPGIKINRIQSLDELGV-----------------DR-K----RLGRYAVESYLEQILSHGFFHADPHPGN  458 (760)
Q Consensus       401 st~~vLVME~ieG~~L~d~~~l~~~g~-----------------d~-~----~la~~lv~~~L~qI~~~GffHaDpHPGN  458 (760)
                      ....+|||||+++.+|.++........                 .+ .    .++.. +-..+.++|..|++|+|+||.|
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~q-ll~aL~yLH~~gIiHRDLKP~N  285 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQ-ILFALDGLHSTGIVHRDVKPQN  285 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHH-HHHHHHHHHHCCEEeCcCCHHH
Confidence            346799999999999988654221110                 00 1    11222 2234788999999999999999


Q ss_pred             EEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----------------------CC
Q 004334          459 IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----------------------PT  516 (760)
Q Consensus       459 ILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~----------------------~~  516 (760)
                      ||+++ .++.++|+|||++..+.......     ..-..+++.+++++...++...                      ..
T Consensus       286 ILl~~-~~~~~KL~DFGlA~~l~~~~~~~-----~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k  359 (566)
T PLN03225        286 IIFSE-GSGSFKIIDLGAAADLRVGINYI-----PKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDR  359 (566)
T ss_pred             EEEeC-CCCcEEEEeCCCccccccccccC-----CcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCC
Confidence            99984 35789999999998664321100     0112345667777755433222                      23


Q ss_pred             CChHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFL  530 (760)
Q Consensus       517 ~D~~al~~~~~~~l  530 (760)
                      .|++++.-.+.+++
T Consensus       360 ~DVwSlGviL~el~  373 (566)
T PLN03225        360 FDIYSAGLIFLQMA  373 (566)
T ss_pred             cccHHHHHHHHHHH
Confidence            49999998877665

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.29  E-value=1e-10  Score=116.74  Aligned_cols=139  Identities=24%  Similarity=0.268  Sum_probs=103.1

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      .+++.|.-+.++.+.+.|.++++|..-|.-...-+.|.++                            -.....+||+.+
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~kl----------------------------rr~Rt~~Earil   53 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKL----------------------------RRERTRREARIL   53 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHH----------------------------HHHHHHHHHHHH
Confidence            3678888899999988888899998777543332222211                            012346789999


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCc
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN  458 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPGN  458 (760)
                      .+.+..     .|.+|.+|.-......|||||++|..|.|.....     +..+... +...+.-+|..||+|+||.+.|
T Consensus        54 ~~a~~~-----GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~-----~~~~~r~-vG~~vg~lH~~givHGDLTtsN  122 (204)
T COG3642          54 AKAREA-----GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA-----RPDLLRE-VGRLVGKLHKAGIVHGDLTTSN  122 (204)
T ss_pred             HHHHHc-----CCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc-----chHHHHH-HHHHHHHHHhcCeecCCCccce
Confidence            988653     6899999988888889999999999998765322     1122222 2334667899999999999999


Q ss_pred             EEEeccCCCcEEEEeecceec
Q 004334          459 IAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       459 ILV~~~~~g~l~LiDFG~v~~  479 (760)
                      |++.   ++++++||||+...
T Consensus       123 iIl~---~~~i~~IDfGLg~~  140 (204)
T COG3642         123 IILS---GGRIYFIDFGLGEF  140 (204)
T ss_pred             EEEe---CCcEEEEECCcccc
Confidence            9997   56799999999873

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.29  E-value=2e-11  Score=128.60  Aligned_cols=182  Identities=16%  Similarity=0.190  Sum_probs=110.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||+|+.+....+..                                   ...+.+|+.
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~-----------------------------------~~~~~~e~~   51 (286)
T cd06622           7 DELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESK-----------------------------------FNQIIMELD   51 (286)
T ss_pred             hhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHH-----------------------------------HHHHHHHHH
Confidence            4799999999999999  599999997654221110                                   011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh--hcCCCHHHHHHHHH--HHHHHHHHh-CCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYAV--ESYLEQILS-HGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~--~~g~d~~~la~~lv--~~~L~qI~~-~GffH  451 (760)
                      .+.++.    +..-+.+...+ ......++||||++|.+|.++....  ...++...+.....  -..+..+|. .|++|
T Consensus        52 ~l~~~~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H  126 (286)
T cd06622          52 ILHKAV----SPYIVDFYGAF-FIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIH  126 (286)
T ss_pred             HHHhcC----CCcHHhhhhhe-ecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEee
Confidence            333331    11111111111 1234568999999999998765432  11333333322222  223567785 69999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC------CCCCChHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL------VPTGDTTAVRRT  525 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~------~~~~D~~al~~~  525 (760)
                      +|++|.||+++.  ++.++++|||++..+.......        ..+...+++++....+..      +...|++++...
T Consensus       127 ~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~i  196 (286)
T cd06622         127 RDVKPTNVLVNG--NGQVKLCDFGVSGNLVASLAKT--------NIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLS  196 (286)
T ss_pred             CCCCHHHEEECC--CCCEEEeecCCcccccCCcccc--------CCCccCccCcchhcCCCCCccCCCCcccchHhHHHH
Confidence            999999999986  7899999999987764332211        113344566666544322      456799999877


Q ss_pred             HHHHH
Q 004334          526 AQFFL  530 (760)
Q Consensus       526 ~~~~l  530 (760)
                      +.+++
T Consensus       197 l~~l~  201 (286)
T cd06622         197 ILEMA  201 (286)
T ss_pred             HHHHH
Confidence            76654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.29  E-value=3.7e-11  Score=123.23  Aligned_cols=182  Identities=18%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             cccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||.|++|+||++..  +|+.|++|+.+.+....-                                 .-...+..|...+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~---------------------------------~~~~~~~~e~~~l   47 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKR---------------------------------KEVEHTLTERNIL   47 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcch---------------------------------HHHHHHHHHHHHH
Confidence            68999999999999  489999998766321110                                 0001122333333


Q ss_pred             HHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          379 ELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +++.     ++  .++.++.  +.....+++|||++|.+|.+...... .++...+...+  +-..+..+|..|++|+|+
T Consensus        48 ~~l~-----h~--~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l  119 (250)
T cd05123          48 SRIN-----HP--FIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEG-RFSEERARFYAAEIVLALEYLHSLGIIYRDL  119 (250)
T ss_pred             HHcC-----CC--cHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            3332     11  2222222  23345699999999999988654321 23444333322  233467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++++|||++.........      .....+...++.++...-...++..|.+++.-.+.+++.
T Consensus       120 ~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~  188 (250)
T cd05123         120 KPENILLDA--DGHIKLTDFGLAKELSSEGSR------TNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLT  188 (250)
T ss_pred             CcceEEEcC--CCcEEEeecCcceecccCCCc------ccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHH
Confidence            999999986  789999999999877553210      011224445566666655556677899998877666553

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.29  E-value=3.9e-11  Score=129.76  Aligned_cols=191  Identities=17%  Similarity=0.113  Sum_probs=115.8

Q ss_pred             ccccc--cccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasa--SiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      -||.|  +++.||+++.  +|+.||||..+.....                                  ++....+.+|.
T Consensus         5 ~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~~e~   50 (327)
T cd08227           5 VIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT----------------------------------NEMVTFLQGEL   50 (327)
T ss_pred             hccccccceEEEEEEeecccCcEEEEEEechhhcc----------------------------------HHHHHHHHHHH
Confidence            47777  8899999998  6999999986542110                                  11122234455


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ..+..+    .+..-+.+.. +....+..++||||++|+++.++.... ..+++...+...+  +-..+..+|..|++|+
T Consensus        51 ~~l~~l----~hpniv~~~~-~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~  125 (327)
T cd08227          51 HVSKLF----NHPNIVPYRA-TFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHR  125 (327)
T ss_pred             HHHHhc----CCCCeeeEEE-EEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecC
Confidence            544443    2222222222 223446679999999999999876432 2234444443332  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhH-HHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-EGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r-~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~  529 (760)
                      |+||.||+++.  ++++++.|||....+..... .....-+.....+...+++++....+  ..+...|++++.-.+.++
T Consensus       126 dlkp~Nil~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el  203 (327)
T cd08227         126 SVKASHILISV--DGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACEL  203 (327)
T ss_pred             CCChhhEEEec--CCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHH
Confidence            99999999986  78999999986654422111 00000000011123346677766542  345678999998877666


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       204 ~~  205 (327)
T cd08227         204 AN  205 (327)
T ss_pred             HH
Confidence            54

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.29  E-value=9.1e-11  Score=121.16  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=118.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCC-chhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPg-i~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.+|.|++|.||.++.  +|+.|+||..... ...                                   .....+.+|.
T Consensus         6 ~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~~e~   50 (256)
T cd08218           6 KKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSP-----------------------------------KEREESRKEV   50 (256)
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCCh-----------------------------------HHHHHHHHHH
Confidence            5799999999999998  5899999975421 000                                   0011233444


Q ss_pred             HHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      ..++++    .+ ++  +++++.  +.....++||||++|.+|.+...... ...+...+...+  +...+..+|..|++
T Consensus        51 ~~l~~l----~~-~~--i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~  123 (256)
T cd08218          51 AVLSNM----KH-PN--IVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKIL  123 (256)
T ss_pred             HHHHhC----CC-CC--eeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            444444    22 22  233332  33456799999999999988654322 223433333322  22336778999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|++|.||+++.  ++.++++|||++..+.......      ....+...+++++...-+..+...|+++++..+.+++
T Consensus       124 h~~l~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~  195 (256)
T cd08218         124 HRDIKSQNIFLTK--DGTIKLGDFGIARVLNSTVELA------RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMC  195 (256)
T ss_pred             cCCCCHHHEEEcC--CCCEEEeeccceeecCcchhhh------hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHH
Confidence            9999999999985  7899999999998775543211      1112445567777776666677789999987766554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.28  E-value=6.3e-11  Score=127.29  Aligned_cols=187  Identities=17%  Similarity=0.125  Sum_probs=117.2

Q ss_pred             ccccccccccEEEEEEE---------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l---------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      .+.||.|++|.||+|+.         .+..||+|+.+......                                   ..
T Consensus        17 ~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~~   61 (314)
T cd05099          17 GKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK-----------------------------------DL   61 (314)
T ss_pred             eeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChH-----------------------------------HH
Confidence            36899999999999975         24579999876532211                                   00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRL  432 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~l  432 (760)
                      ..+.+|...+.++    .++++ +.+..++ ......+++|||++|++|.++.....               ..+....+
T Consensus        62 ~~~~~E~~~l~~l----~~h~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~  136 (314)
T cd05099          62 ADLISEMELMKLI----GKHKNIINLLGVC-TQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDL  136 (314)
T ss_pred             HHHHHHHHHHHhc----cCCCCeeeEEEEE-ccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHH
Confidence            1123343333332    12232 2222222 23355799999999999998764321               11222222


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004334          433 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       433 a~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l  510 (760)
                      ....  +-..+..+|..|++|+|++|+||++++  ++.++|+|||.+..+........  .  ........+++++....
T Consensus       137 ~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~--~--~~~~~~~~y~aPE~~~~  210 (314)
T cd05099         137 VSCAYQVARGMEYLESRRCIHRDLAARNVLVTE--DNVMKIADFGLARGVHDIDYYKK--T--SNGRLPVKWMAPEALFD  210 (314)
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccccceeEEEcC--CCcEEEccccccccccccccccc--c--ccCCCCccccCHHHHcc
Confidence            2221  233468899999999999999999985  78999999999987754321110  0  00112245777887777


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      +..+...|++++.-.+.+++
T Consensus       211 ~~~~~~~DiwslG~~l~el~  230 (314)
T cd05099         211 RVYTHQSDVWSFGILMWEIF  230 (314)
T ss_pred             CCcCccchhhHHHHHHHHHH
Confidence            77777899999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.28  E-value=5.2e-11  Score=125.14  Aligned_cols=186  Identities=16%  Similarity=0.096  Sum_probs=115.3

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|.+.       +..|++|.........                                   ....+
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~-----------------------------------~~~~~   56 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQ-----------------------------------DESDF   56 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHH-----------------------------------HHHHH
Confidence            68999999999999983       3678888765422111                                   01123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc------CCCHHHHHHHH--HHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL------GVDRKRLGRYA--VESYL  441 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~------g~d~~~la~~l--v~~~L  441 (760)
                      .+|...+.++    . +++  +.+.+.  ......+++|||++|++|.++......      .++...+...+  +-..+
T Consensus        57 ~~e~~~l~~l----~-~~~--i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l  129 (277)
T cd05036          57 LMEALIMSKF----N-HQN--IVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGC  129 (277)
T ss_pred             HHHHHHHHhC----C-CCC--EeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3444444443    2 222  223332  233457999999999999987543221      23333333322  22336


Q ss_pred             HHHHhCCccccCCCCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      ..+|..|++|+|++|.||++++.. +..++|+|||++..+....-...    .+.......+++++....+..+...|++
T Consensus       130 ~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Diw  205 (277)
T cd05036         130 KYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRK----GGRAMLPIKWMPPEAFLDGIFTSKTDVW  205 (277)
T ss_pred             HHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceec----CCCCCccHhhCCHHHHhcCCcCchhHHH
Confidence            788999999999999999998522 23589999999987743211000    0000113456777777767778889999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      ++.-.+.+++
T Consensus       206 slG~il~el~  215 (277)
T cd05036         206 SFGVLLWEIF  215 (277)
T ss_pred             HHHHHHHHHH
Confidence            9987776654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.28  E-value=1.9e-11  Score=127.15  Aligned_cols=119  Identities=13%  Similarity=0.045  Sum_probs=80.5

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCC------CcEEEEe
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNG------GRLIFYD  473 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~------g~l~LiD  473 (760)
                      ...+++|||++|++|.++........+.......+  +-..+..+|..|++|+|++|.||++++.++      +.++++|
T Consensus        72 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d  151 (258)
T cd05078          72 DESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSD  151 (258)
T ss_pred             CCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecc
Confidence            56799999999999988764433334443332222  223468899999999999999999985211      1379999


Q ss_pred             ecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHH
Q 004334          474 FGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       474 FG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l  530 (760)
                      ||....+.+...          ..++..+++++...- ...+...|++++...+.+++
T Consensus       152 ~g~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~  199 (258)
T cd05078         152 PGISITVLPKEI----------LLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF  199 (258)
T ss_pred             cccccccCCchh----------ccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence            998876544221          234455667776553 34566789999987776654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.28  E-value=2.2e-11  Score=132.81  Aligned_cols=195  Identities=19%  Similarity=0.237  Sum_probs=117.8

Q ss_pred             HhCCChhhhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccch
Q 004334          284 ELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (760)
Q Consensus       284 elG~~~~~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l  360 (760)
                      +.+....++...|. .++||.|++|.||+|+.  +|+.||||+.+......                             
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   55 (342)
T cd07879           5 EVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSE-----------------------------   55 (342)
T ss_pred             hhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccc-----------------------------
Confidence            44545555555564 48999999999999997  59999999865421110                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH
Q 004334          361 VAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY  435 (760)
Q Consensus       361 ~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~  435 (760)
                           .+...+.+|...+.++.    +..-+.+..++..     .....++||||+++ .+.++.   ...+....+...
T Consensus        56 -----~~~~~~~~e~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~~~~~~~  122 (342)
T cd07879          56 -----IFAKRAYRELTLLKHMQ----HENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIM---GHPLSEDKVQYL  122 (342)
T ss_pred             -----cchhHHHHHHHHHHhcC----CCCccchhheecccccCCCCceEEEEeccccc-CHHHHH---cCCCCHHHHHHH
Confidence                 00111233433333331    2222223332221     12345899999975 444432   122333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004334          436 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  512 (760)
Q Consensus       436 l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~  512 (760)
                      +  +-..+..+|..|++|+|++|.||+++.  ++.++|+|||++...+.....         ..++..+++++.... ..
T Consensus       123 ~~qi~~aL~~LH~~~i~H~dlkp~NIll~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~  191 (342)
T cd07879         123 VYQMLCGLKYIHSAGIIHRDLKPGNLAVNE--DCELKILDFGLARHADAEMTG---------YVVTRWYRAPEVILNWMH  191 (342)
T ss_pred             HHHHHHHHHHHHHCCcccCCCCHHHEEECC--CCCEEEeeCCCCcCCCCCCCC---------ceeeecccChhhhcCccc
Confidence            2  223478899999999999999999986  889999999998876443211         122344566666543 23


Q ss_pred             CCCCCChHHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l~  531 (760)
                      .+...|+++++-.+.+++.
T Consensus       192 ~~~~~Dv~slGvil~el~~  210 (342)
T cd07879         192 YNQTVDIWSVGCIMAEMLT  210 (342)
T ss_pred             cCchHHHHHHHHHHHHHHh
Confidence            4567899999877766553

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.28  E-value=1.7e-11  Score=130.75  Aligned_cols=137  Identities=16%  Similarity=0.132  Sum_probs=83.8

Q ss_pred             CceeeceeeeccCC------CeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccCCCCCcE
Q 004334          389 DYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHADPHPGNI  459 (760)
Q Consensus       389 ~~V~VP~vy~e~st------~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaDpHPGNI  459 (760)
                      .+..+|..+.....      -.+++||++.+ .+.+..... .......   ++..++ ..+..+|..|++|+|+||.||
T Consensus        81 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~qi~-~~l~~lH~~~iiHrDiKp~Ni  157 (294)
T PHA02882         81 DHLGIPKYYGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRI-KCKNKKLIKNIMKDML-TTLEYIHEHGISHGDIKPENI  157 (294)
T ss_pred             CCCCCCcEEEeeeEecCCceEEEEEEehhcc-CHHHHHHhh-ccCCHHHHHHHHHHHH-HHHHHHHhCCeecCCCCHHHE
Confidence            34456666642211      23678887654 333332211 1122222   222222 347789999999999999999


Q ss_pred             EEeccCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          460 AVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       460 LV~~~~~g~l~LiDFG~v~~l~~~~r~~-l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+++  ++.++|+|||++..+....... +..-......+.+.+++++.......+...|++++.-.+.+++
T Consensus       158 ll~~--~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~  227 (294)
T PHA02882        158 MVDG--NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWA  227 (294)
T ss_pred             EEcC--CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            9985  7899999999998764322110 0000111224667778888777666778889999987766654

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=4.3e-11  Score=124.14  Aligned_cols=185  Identities=14%  Similarity=0.147  Sum_probs=116.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +++|.|++|.||+|..  +++.|++|+..+....                                     ...+.+|..
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-------------------------------------~~~~~~e~~   54 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDE-------------------------------------EEEIKEEYN   54 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEEecCchh-------------------------------------HHHHHHHHH
Confidence            6899999999999999  5889999987653210                                     012234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHH--HHHHHHHHHh
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQILS  446 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~L~qI~~  446 (760)
                      .+.++..   +..-+.+...+..     .....+++|||++|.+|.++.....   ..++...+....  +-..+..+|.
T Consensus        55 ~l~~~~~---h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~  131 (275)
T cd06608          55 ILRKYSN---HPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE  131 (275)
T ss_pred             HHHHhcC---CCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            4444321   1111222222211     1233689999999999988754321   223333332222  2234678899


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----CCCCCCChHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----VLVPTGDTTA  521 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-----~~~~~~D~~a  521 (760)
                      .|++|+|++|.||+++.  ++.++|+|||++..+.......      ....+...+++++.....     ..+...|+++
T Consensus       132 ~~i~H~~l~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~s  203 (275)
T cd06608         132 NKVIHRDIKGQNILLTK--NAEVKLVDFGVSAQLDSTLGRR------NTFIGTPYWMAPEVIACDEQPDASYDARSDVWS  203 (275)
T ss_pred             CCcccCCCCHHHEEEcc--CCeEEECCCccceecccchhhh------cCccccccccCHhHhcccccccCCccccccHHH
Confidence            99999999999999986  7899999999998765433211      111244556777765432     2345689999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      ++..+.+++.
T Consensus       204 lG~il~~l~~  213 (275)
T cd06608         204 LGITAIELAD  213 (275)
T ss_pred             hHHHHHHHHh
Confidence            9877766553

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.28  E-value=2.6e-11  Score=132.50  Aligned_cols=184  Identities=21%  Similarity=0.226  Sum_probs=113.7

Q ss_pred             cccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      +.|+ .++||+|++|.||+|..  +|+.||||+........                                  .....
T Consensus        17 ~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~   62 (345)
T cd07877          17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI----------------------------------IHAKR   62 (345)
T ss_pred             CceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhh----------------------------------HHHHH
Confidence            3443 36899999999999997  69999999876532111                                  00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeee-----ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLE  442 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~-----e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~  442 (760)
                      +.+|...+.+++    +..-+.+..++.     +.....+++|+++ |..|.++....  .+....   ++..++ ..+.
T Consensus        63 ~~~Ei~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~-~aL~  134 (345)
T cd07877          63 TYRELRLLKHMK----HENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQIL-RGLK  134 (345)
T ss_pred             HHHHHHHHHHcC----CCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhcC--CCCHHHHHHHHHHHH-HHHH
Confidence            344555555552    222233333332     1223467888887 66787764322  233332   222223 3468


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  521 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~a  521 (760)
                      .+|..|++|+|++|.||+++.  ++.++|+|||++.........         ..+...+++++.... ...++..|+++
T Consensus       135 ~LH~~~ivH~dlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~Dvws  203 (345)
T cd07877         135 YIHSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLNWMHYNQTVDIWS  203 (345)
T ss_pred             HHHHCCeeecCCChHHEEEcC--CCCEEEecccccccccccccc---------cccCCCccCHHHHhCccCCCchhhHHH
Confidence            899999999999999999986  789999999998776443211         112333455655433 33456789999


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      ++-.+.+++
T Consensus       204 lG~il~el~  212 (345)
T cd07877         204 VGCIMAELL  212 (345)
T ss_pred             HHHHHHHHH
Confidence            987776654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=5.8e-11  Score=123.74  Aligned_cols=190  Identities=16%  Similarity=0.075  Sum_probs=118.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|++|+.........                               ..+....+.+|+.
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~-------------------------------~~~~~~~~~~ei~   56 (264)
T cd06653           8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQE-------------------------------TSKEVNALECEIQ   56 (264)
T ss_pred             eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccch-------------------------------hhHHHHHHHHHHH
Confidence            6799999999999998  589999997643211100                               0011123455666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +..-+.+...+... ....+++|||++|.+|.+..... ...+...   ++..++ ..+..+|..|++|+
T Consensus        57 ~l~~l~----h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~-~al~~LH~~~i~H~  130 (264)
T cd06653          57 LLKNLR----HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAY-GALTENVTRRYTRQIL-QGVSYLHSNMIVHR  130 (264)
T ss_pred             HHHHcC----CCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHc-CCCCHHHHHHHHHHHH-HHHHHHHhCCEecC
Confidence            555552    22223333333222 23468999999999998865321 1223222   222233 34678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++|+||++++  ++.+++.|||.+..+.........   .....+...++++++......+...|++++...+.+++
T Consensus       131 dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  203 (264)
T cd06653         131 DIKGANILRDS--AGNVKLGDFGASKRIQTICMSGTG---IKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEML  203 (264)
T ss_pred             CCCHHHEEEcC--CCCEEECccccccccccccccCcc---ccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHH
Confidence            99999999985  789999999999876432110000   00112445566777766555667789999987776654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.28  E-value=4.3e-11  Score=126.35  Aligned_cols=184  Identities=17%  Similarity=0.114  Sum_probs=114.7

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..||.|++|+||+|..       ++..||||+.+.+....                                   ....+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~~~~~   55 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-----------------------------------MQADF   55 (288)
T ss_pred             ccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHH-----------------------------------HHHHH
Confidence            5799999999999986       35789999876532111                                   11123


Q ss_pred             HHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------------------CCCH
Q 004334          372 YQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------------GVDR  429 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------------------g~d~  429 (760)
                      .+|+..+.++     ++++ +.+...+ ......+++|||++|++|.++......                     .++.
T Consensus        56 ~~ei~~l~~l-----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (288)
T cd05050          56 QREAALMAEF-----DHPNIVKLLGVC-AVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSC  129 (288)
T ss_pred             HHHHHHHHhc-----CCCchheEEEEE-cCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCH
Confidence            3454444444     2222 2222222 233467999999999999887642110                     1122


Q ss_pred             HH---HHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          430 KR---LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       430 ~~---la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      ..   ++..++. .+..+|..|++|+|++|.||+++.  ++.++++|||+...+....-..   . .........+++++
T Consensus       130 ~~~~~~~~~i~~-aL~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~---~-~~~~~~~~~y~aPE  202 (288)
T cd05050         130 TEQLCIAKQVAA-GMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYK---A-SENDAIPIRWMPPE  202 (288)
T ss_pred             HHHHHHHHHHHH-HHHHHHhCCeecccccHhheEecC--CCceEECccccceecccCcccc---c-cCCCccChhhcCHH
Confidence            22   2222222 367899999999999999999985  8899999999987653321000   0 00001123466777


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ....+..+...|++++.-.+.+++
T Consensus       203 ~~~~~~~~~~~Dv~slG~il~el~  226 (288)
T cd05050         203 SIFYNRYTTESDVWAYGVVLWEIF  226 (288)
T ss_pred             HHhcCCCCchhHHHHHHHHHHHHH
Confidence            776666677889999987766654

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.28  E-value=4.9e-11  Score=111.49  Aligned_cols=134  Identities=24%  Similarity=0.327  Sum_probs=95.4

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ++++.|+++.||+++.++..++||+.++...                                      ...+..|...+
T Consensus         4 ~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~--------------------------------------~~~~~~e~~~~   45 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKDEDYVLKINPSREK--------------------------------------GADREREVAIL   45 (155)
T ss_pred             eecccccccceEEEEecCCeEEEEecCCCCc--------------------------------------hhHHHHHHHHH
Confidence            5799999999999999888999998766321                                      11234566666


Q ss_pred             HHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh---CCccccC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS---HGFFHAD  453 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~---~GffHaD  453 (760)
                      +.+.+.     ...+|+++....  +..+++|||++|.++..+.     ......++. .+...+..+|.   .|++|+|
T Consensus        46 ~~l~~~-----~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~~-----~~~~~~~~~-~~~~~l~~lh~~~~~~i~H~D  114 (155)
T cd05120          46 QLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEVS-----EEEKEDIAE-QLAELLAKLHQLPLLVLCHGD  114 (155)
T ss_pred             HHHHHc-----CCCCCeEEEEcCCCCccEEEEEecCCeecccCC-----HHHHHHHHH-HHHHHHHHHhCCCceEEEecC
Confidence            666553     356777765443  3689999999998886540     011122222 23344667776   4799999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      +||+||++++  ++.++++|||.+...++.
T Consensus       115 l~~~Nil~~~--~~~~~l~Df~~~~~~~~~  142 (155)
T cd05120         115 LHPGNILVDD--GKILGIIDWEYAGYGPPA  142 (155)
T ss_pred             CCcceEEEEC--CcEEEEEecccccCCChH
Confidence            9999999985  689999999999876543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.27  E-value=3.8e-11  Score=127.06  Aligned_cols=186  Identities=16%  Similarity=0.119  Sum_probs=116.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.|+||..+.....                                  +.+.....+|..
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~~~~e~~   56 (293)
T cd07843          11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK----------------------------------EGFPITSLREIN   56 (293)
T ss_pred             hhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc----------------------------------ccchhhHHHHHH
Confidence            6899999999999999  5899999986542111                                  011112334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeec-cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e-~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+.. .....+++|||++| +|.++.......++...+...+  +-..+..+|..|++|+|
T Consensus        57 ~l~~l~----h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~d  131 (293)
T cd07843          57 ILLKLQ----HPNIVTVKEVVVGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRD  131 (293)
T ss_pred             HHHhcC----CCCEEEEEEEEEecCCCcEEEEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecc
Confidence            555542    2222222222211 12678999999987 7776554322234444443333  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||+++.  ++.++|+|||.+..+.......      ....++..+++++..... ..+...|++++...+.+++.
T Consensus       132 l~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~  202 (293)
T cd07843         132 LKTSNLLLNN--RGILKICDFGLAREYGSPLKPY------TQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLT  202 (293)
T ss_pred             CCHHHEEECC--CCcEEEeecCceeeccCCcccc------ccccccccccCchhhcCCccccchhhHHHHHHHHHHHHh
Confidence            9999999986  7899999999998776542111      001123445666655432 24566899999877666543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.27  E-value=7.3e-11  Score=123.31  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=117.2

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..||.|++|.||+|...       +..|++|....+....                                   ....+
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~-----------------------------------~~~~~   56 (277)
T cd05032          12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMR-----------------------------------ERIEF   56 (277)
T ss_pred             eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHH-----------------------------------HHHHH
Confidence            57999999999999983       2689999865431100                                   01122


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------CCCHHHHHHHH--HHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA--VESY  440 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------g~d~~~la~~l--v~~~  440 (760)
                      .+|+..+..+    .+..-+.+...+ ......+++|||++|++|.++......         ..+...+...+  +-..
T Consensus        57 ~~e~~~l~~~----~~~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  131 (277)
T cd05032          57 LNEASVMKEF----NCHHVVRLLGVV-STGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADG  131 (277)
T ss_pred             HHHHHHHHhC----CCCceeEEEEEE-cCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHH
Confidence            3444444443    222222222222 334567999999999999987532111         12222333222  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      +..+|..|++|+|++|.||+++.  ++.++|+|||++..+........    .+.......+++++...-+..++..|++
T Consensus       132 l~~lH~~~i~H~di~p~nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~  205 (277)
T cd05032         132 MAYLAAKKFVHRDLAARNCMVAE--DLTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGVFTTKSDVW  205 (277)
T ss_pred             HHHHHhCCccccccChheEEEcC--CCCEEECCcccchhhccCccccc----CCCCCccccccCHHHHhcCCCCcccchH
Confidence            67899999999999999999986  78999999999876644321000    0111123456777777777778889999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      ++.-.+.+++
T Consensus       206 slG~il~el~  215 (277)
T cd05032         206 SFGVVLWEMA  215 (277)
T ss_pred             HHHHHHHHhh
Confidence            9987766554

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.27  E-value=6.2e-11  Score=123.67  Aligned_cols=193  Identities=15%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.+|.|++|.||+|..  +|+.|++|+.+......-                               ..+....+.+|+
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~-------------------------------~~~~~~~~~~e~   55 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPE-------------------------------TSKEVSALECEI   55 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCch-------------------------------hHHHHHHHHHHH
Confidence            36899999999999998  589999998654321100                               001122345566


Q ss_pred             HHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      ..+.++.    +..-+.+...+... ....+++|||++|.+|.+...... ..+.......  .+...+..+|..|++|+
T Consensus        56 ~~l~~l~----h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~LH~~~i~H~  130 (266)
T cd06651          56 QLLKNLQ----HERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLHSNMIVHR  130 (266)
T ss_pred             HHHHHcC----CCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeC
Confidence            6555552    22223333333322 234689999999999988653221 2333322222  12234678999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||++++  ++.++|+|||++..+........  . .....+...+++++.......+...|++++.-.+.+++.
T Consensus       131 ~l~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~--~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~  204 (266)
T cd06651         131 DIKGANILRDS--AGNVKLGDFGASKRLQTICMSGT--G-IRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLT  204 (266)
T ss_pred             CCCHHHEEECC--CCCEEEccCCCccccccccccCC--c-cccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHH
Confidence            99999999975  78999999999876643211100  0 001224455677777766556677899999877766553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.27  E-value=3.7e-11  Score=126.90  Aligned_cols=187  Identities=17%  Similarity=0.169  Sum_probs=111.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|..
T Consensus         7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~----------------------------------~~~~~~~~E~~   52 (295)
T cd07837           7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEE----------------------------------GIPPTALREIS   52 (295)
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEeehhhcccc----------------------------------CCchHHHHHHH
Confidence            5699999999999998  58999999865421110                                  00112234444


Q ss_pred             HHHHHHHhcCCCC-ceeeceeeeccCC----CeEEEEeecCCCchhhhhhhhh----cCCCHHHHHHHH--HHHHHHHHH
Q 004334          377 NAELFASNFKDMD-YVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLDE----LGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~-~V~VP~vy~e~st----~~vLVME~ieG~~L~d~~~l~~----~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      .+..+.    +++ -+.+..++.....    ..+++|||++| .+.++.....    ..++...+...+  +-..+..+|
T Consensus        53 ~l~~l~----~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH  127 (295)
T cd07837          53 LLQMLS----ESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH  127 (295)
T ss_pred             HHHHcc----CCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            444442    222 2233333221111    25899999998 5766543211    123333333322  223478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  524 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~  524 (760)
                      ..|++|+|++|.||+++. .++.++|+|||++..+.........      ..+.+.+++++.... ...+...|++++..
T Consensus       128 ~~~i~H~dl~~~nil~~~-~~~~~kl~dfg~~~~~~~~~~~~~~------~~~~~~~~aPE~~~~~~~~~~~~Di~slG~  200 (295)
T cd07837         128 KHGVMHRDLKPQNLLVDK-QKGLLKIADLGLGRAFSIPVKSYTH------EIVTLWYRAPEVLLGSTHYSTPVDIWSVGC  200 (295)
T ss_pred             HCCeeecCCChHHEEEec-CCCeEEEeecccceecCCCccccCC------cccccCCCChHHhhCCCCCCchHHHHHHHH
Confidence            999999999999999984 3678999999998876433211000      012334455554432 33466789999987


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       201 ~l~~l~~  207 (295)
T cd07837         201 IFAEMSR  207 (295)
T ss_pred             HHHHHHc
Confidence            7766543

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.27  E-value=3e-11  Score=128.06  Aligned_cols=185  Identities=15%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..||.|++|.||+|..       ++..|++|.......                                    .....+
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~------------------------------------~~~~~~   54 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL------------------------------------AARKDF   54 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH------------------------------------HHHHHH
Confidence            5799999999999985       245688887643211                                    001123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------------CCCHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------GVDRKRLGRYA  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------------g~d~~~la~~l  436 (760)
                      .+|+..+.++    . ++++.-..-+.......++||||++|.+|.++......               ..+...+...+
T Consensus        55 ~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  129 (291)
T cd05094          55 QREAELLTNL----Q-HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA  129 (291)
T ss_pred             HHHHHHHhcC----C-CCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHH
Confidence            4455555544    2 23322222223345667999999999999987643211               12222222222


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                        +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    ....+...+++++.......+
T Consensus       130 ~~i~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~dfg~a~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~  203 (291)
T cd05094         130 SQIASGMVYLASQHFVHRDLATRNCLVGA--NLLVKIGDFGMSRDVYSTDYYRVG----GHTMLPIRWMPPESIMYRKFT  203 (291)
T ss_pred             HHHHHHHHHHHhCCeeecccCcceEEEcc--CCcEEECCCCcccccCCCceeecC----CCCCcceeecChHHhccCCCC
Confidence              223367889999999999999999986  789999999998765443211100    111123456777776666667


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      +..|++++.-.+.+++
T Consensus       204 ~~~Di~slG~il~el~  219 (291)
T cd05094         204 TESDVWSFGVILWEIF  219 (291)
T ss_pred             chhhHHHHHHHHHHHH
Confidence            7889999987776654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.27  E-value=2.8e-11  Score=144.39  Aligned_cols=142  Identities=20%  Similarity=0.239  Sum_probs=92.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..-...                                 ......+..|..
T Consensus        10 ~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~---------------------------------~~~~~~~~~E~~   56 (669)
T cd05610          10 KPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMIN---------------------------------KNMVHQVQAERD   56 (669)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEehhhccC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999999  49999999976421000                                 011112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+..+    .+...+.+... .......+|||||++|++|.++..... .++...   ++..+ -..+..+|..|++|+|
T Consensus        57 ~l~~l----~hp~Iv~~~~~-~~~~~~~~lVmEy~~g~~L~~li~~~~-~l~~~~~~~i~~qi-l~aL~yLH~~gIiHrD  129 (669)
T cd05610          57 ALALS----KSPFIVHLYYS-LQSANNVYLVMEYLIGGDVKSLLHIYG-YFDEEMAVKYISEV-ALALDYLHRHGIIHRD  129 (669)
T ss_pred             HHHhc----CCCCcCeEEEE-EEECCEEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHH-HHHHHHHHhCCEEeCC
Confidence            44333    22212222222 233456799999999999998764221 122222   22222 2347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      +||.|||++.  ++.++|+|||++.....
T Consensus       130 LKP~NILl~~--~g~vkL~DFGls~~~~~  156 (669)
T cd05610         130 LKPDNMLISN--EGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             ccHHHEEEcC--CCCEEEEeCCCCccccC
Confidence            9999999985  78999999999986543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.27  E-value=2.7e-11  Score=126.66  Aligned_cols=187  Identities=18%  Similarity=0.185  Sum_probs=114.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|+|++|+||+|+.  +|+.||||+.+.....                                  ++....+.+|..
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~----------------------------------~~~~~~~~~e~~   50 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENEK----------------------------------EGFPITAIREIK   50 (287)
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEeccccc----------------------------------ccchHHHHHHHH
Confidence            4689999999999998  4899999998763200                                  011122334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+..++... ....+++|||+++ ++.++........+...+...+  +-..+..+|..|++|+|
T Consensus        51 ~l~~l~----~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~d  125 (287)
T cd07840          51 LLQKLR----HPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRD  125 (287)
T ss_pred             HHHhcc----CCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceecc
Confidence            555442    22223333333322 2568999999987 6766543322234433332222  22336789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++++|||++..+..........     ...+..+++++... ....++..|+++++-.+.+++.
T Consensus       126 l~p~nil~~~--~~~~~l~d~g~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t  197 (287)
T cd07840         126 IKGSNILINN--DGVLKLADFGLARPYTKRNSADYTN-----RVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFL  197 (287)
T ss_pred             CcHHHeEEcC--CCCEEEccccceeeccCCCcccccc-----cccccccCCceeeEccccCChHHHHHHHHHHHHHHHh
Confidence            9999999986  8899999999998876543211110     01123344444322 2234566789988877666543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.26  E-value=5.7e-11  Score=126.43  Aligned_cols=183  Identities=14%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             cccccccccEEEEEEE--CCe--eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~--~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|+||+|++  +|.  .|++|..+......                                   ....+.+|
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~~~~~~~E   52 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN-----------------------------------DHRDFAGE   52 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHH-----------------------------------HHHHHHHH
Confidence            5799999999999998  343  47888654311110                                   11223455


Q ss_pred             HHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH--
Q 004334          375 AANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA--  436 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l--  436 (760)
                      ...+.++.    ++++ +.+...+ ......+++|||+++++|.++.....               .......+...+  
T Consensus        53 ~~~l~~l~----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q  127 (297)
T cd05089          53 LEVLCKLG----HHPNIINLLGAC-ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASD  127 (297)
T ss_pred             HHHHHhhc----CCCchhheEEEE-ccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHH
Confidence            55555542    2222 2222222 23345799999999999988753211               012223332222  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          437 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       437 v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      +-..+..+|..|++|+|+||.||++++  ++.++|+|||+............       ......+++++....+..+..
T Consensus       128 i~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~  198 (297)
T cd05089         128 VATGMQYLSEKQFIHRDLAARNVLVGE--NLASKIADFGLSRGEEVYVKKTM-------GRLPVRWMAIESLNYSVYTTK  198 (297)
T ss_pred             HHHHHHHHHHCCcccCcCCcceEEECC--CCeEEECCcCCCccccceeccCC-------CCcCccccCchhhccCCCCch
Confidence            223478899999999999999999985  78999999998864332111100       011223566666666666778


Q ss_pred             CChHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFL  530 (760)
Q Consensus       517 ~D~~al~~~~~~~l  530 (760)
                      .|++++.-.+.+++
T Consensus       199 ~DvwSlG~il~el~  212 (297)
T cd05089         199 SDVWSFGVLLWEIV  212 (297)
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999988776654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.26  E-value=2.9e-11  Score=126.97  Aligned_cols=185  Identities=19%  Similarity=0.234  Sum_probs=112.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|..  +|+.||+|+........                                  .....+.+|.+
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   52 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK----------------------------------MVKKIAMREIR   52 (286)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc----------------------------------hhhHHHHHHHH
Confidence            5799999999999999  48999999753321110                                  00111233433


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+...+ ......+++|||++|..+.++.... .+.+...+...+.  -..+..+|..|++|+|+
T Consensus        53 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l  126 (286)
T cd07846          53 MLKQL----RHENLVNLIEVF-RRKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQILRGIEFCHSHNIIHRDI  126 (286)
T ss_pred             HHHhc----CCcchhhHHHhc-ccCCeEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCC
Confidence            33333    121112222222 2234579999999999888764322 2244444433322  23467889999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|+|||++..+...... ...     ..+...+++++.... ...+...|+++++..+.+++.
T Consensus       127 ~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~-~~~-----~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~  196 (286)
T cd07846         127 KPENILVSQ--SGVVKLCDFGFARTLAAPGEV-YTD-----YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLT  196 (286)
T ss_pred             CHHHEEECC--CCcEEEEeeeeeeeccCCccc-cCc-----ccceeeccCcHHhccccccCchHhHHHHHHHHHHHHc
Confidence            999999986  889999999999877554321 100     112333445554432 233456799999877766553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.26  E-value=3.3e-11  Score=127.43  Aligned_cols=185  Identities=16%  Similarity=0.079  Sum_probs=108.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|..  +|+.|+||+.+....+..                                   .....+|+
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~-----------------------------------~~~~~~e~   54 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGV-----------------------------------PFTAIREA   54 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCC-----------------------------------cHHHHHHH
Confidence            36799999999999998  589999998654211110                                   00122444


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+    .+..-+.+... .......+++|||++|. +.+.............+....  +-..+..+|..|++|+|
T Consensus        55 ~~l~~l----~h~ni~~~~~~-~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~d  128 (291)
T cd07870          55 SLLKGL----KHANIVLLHDI-IHTKETLTFVFEYMHTD-LAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRD  128 (291)
T ss_pred             HHHHhc----CCCCEeEEEEE-EecCCeEEEEEecccCC-HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            444444    22222222222 23344679999999764 443322222222322222221  22346789999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++...........      ...++..+++++.... ...+...|++++...+.+++.
T Consensus       129 lkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~  199 (291)
T cd07870         129 LKPQNLLISY--LGELKLADFGLARAKSIPSQTYS------SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQ  199 (291)
T ss_pred             CChHHEEEcC--CCcEEEeccccccccCCCCCCCC------CccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHh
Confidence            9999999985  78999999998875433221100      0012334455554432 223456799998877766553

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.26  E-value=6.4e-11  Score=125.31  Aligned_cols=186  Identities=13%  Similarity=0.118  Sum_probs=114.0

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+..       +..|++|+...+....                                  + ...+
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------~-~~~~   50 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSS----------------------------------E-LRDL   50 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHH----------------------------------H-HHHH
Confidence            57899999999999872       2579999876532111                                  0 1123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-----------------------cCCC
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------------LGVD  428 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-----------------------~g~d  428 (760)
                      .+|...+..+    .+..-+.+...+ ......+++|||++|++|.++.....                       ..++
T Consensus        51 ~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  125 (290)
T cd05045          51 LSEFNLLKQV----NHPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALT  125 (290)
T ss_pred             HHHHHHHhhC----CCCCEeeEEEEE-ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccC
Confidence            4454444444    222223333322 34466799999999999988653211                       0112


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          429 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       429 ~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      ...+...+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+......  ...  ........+++++
T Consensus       126 ~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~--~~~~kl~dfg~~~~~~~~~~~--~~~--~~~~~~~~y~apE  199 (290)
T cd05045         126 MGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAE--GRKMKISDFGLSRDVYEEDSY--VKR--SKGRIPVKWMAIE  199 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcC--CCcEEeccccccccccCccch--hcc--cCCCCCccccCHH
Confidence            22222222  223468899999999999999999986  789999999998776433211  000  0011223456666


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ...-...+...|++++...+.+++
T Consensus       200 ~~~~~~~~~~~Di~slG~~l~el~  223 (290)
T cd05045         200 SLFDHIYTTQSDVWSFGVLLWEIV  223 (290)
T ss_pred             HHccCCcchHhHHHHHHHHHHHHH
Confidence            555555667789999887766554

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.26  E-value=8.6e-11  Score=122.68  Aligned_cols=184  Identities=17%  Similarity=0.156  Sum_probs=116.9

Q ss_pred             cccccccccEEEEEEE-C--C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~--G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.+|.|++|.||+|+. +  +  ..|+||..+.....                                   +..+.+.+
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~-----------------------------------~~~~~~~~   56 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSP-----------------------------------SVREKFLQ   56 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCH-----------------------------------HHHHHHHH
Confidence            6799999999999997 2  2  46888976543211                                   11122344


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+..++  .....+++|||++|++|.++........+...+...+  +-..+..+|..|++|
T Consensus        57 e~~~l~~~----~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H  130 (270)
T cd05056          57 EAYIMRQF----DHPHIVKLIGVI--TENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVH  130 (270)
T ss_pred             HHHHHHhC----CCCchhceeEEE--cCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            55555544    222223333322  2355789999999999998764333233433332222  223467899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||+++.  ++.++++|||.+..+......  ..   ........+++++.......+...|++++...+.+++
T Consensus       131 ~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~--~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  202 (270)
T cd05056         131 RDIAARNVLVSS--PDCVKLGDFGLSRYLEDESYY--KA---SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL  202 (270)
T ss_pred             cccChheEEEec--CCCeEEccCceeeecccccce--ec---CCCCccccccChhhhccCCCCchhhhHHHHHHHHHHH
Confidence            999999999985  789999999998877554210  00   0111233566777766666677889999987765544

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.26  E-value=4.2e-11  Score=126.75  Aligned_cols=186  Identities=16%  Similarity=0.123  Sum_probs=116.8

Q ss_pred             ccccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      .+.+|.|++|.||++..       ++..||||..+-.-                                    ......
T Consensus        10 ~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~------------------------------------~~~~~~   53 (288)
T cd05093          10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS------------------------------------DNARKD   53 (288)
T ss_pred             ccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC------------------------------------HHHHHH
Confidence            35799999999999985       24568888653210                                    011122


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh------------cCCCHHHHHHHH--
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------------LGVDRKRLGRYA--  436 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~------------~g~d~~~la~~l--  436 (760)
                      +.+|+..+.++    .+..-+.+... .......+++|||++|.+|.++.....            ..++...+...+  
T Consensus        54 ~~~e~~~l~~l----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  128 (288)
T cd05093          54 FHREAELLTNL----QHEHIVKFYGV-CVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQ  128 (288)
T ss_pred             HHHHHHHHHhC----CCCCcceEEEE-EecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHH
Confidence            34455555544    22222222222 234467899999999999988653211            113333333322  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          437 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       437 v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    .-......+++++....+..++.
T Consensus       129 l~~aL~~lH~~~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~  202 (288)
T cd05093         129 IAAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRVG----GHTMLPIRWMPPESIMYRKFTTE  202 (288)
T ss_pred             HHHHHHHHHhCCeeecccCcceEEEcc--CCcEEeccCCccccccCCceeecC----CCCCccccccCHHHhccCCCCch
Confidence            223367899999999999999999986  889999999998876433210000    00112345777887776667778


Q ss_pred             CChHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFL  530 (760)
Q Consensus       517 ~D~~al~~~~~~~l  530 (760)
                      .|++++.-.+.+++
T Consensus       203 sDiwslG~il~~l~  216 (288)
T cd05093         203 SDVWSLGVVLWEIF  216 (288)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999987776654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.25  E-value=8.6e-11  Score=123.18  Aligned_cols=184  Identities=17%  Similarity=0.185  Sum_probs=110.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.......                                   ..+..|..
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~-----------------------------------~~~~~e~~   51 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQ-----------------------------------KRLLMDLD   51 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHH-----------------------------------HHHHHHHH
Confidence            5799999999999999  5999999987664321100                                   01111211


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhC-Ccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSH-GFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~-Gff  450 (760)
                      .+.+   ...+..-+.+...+ ......+++|||++| .+.++...   ....++...+....  +-..+..+|.+ +++
T Consensus        52 ~~~~---~~~~~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~  126 (283)
T cd06617          52 ISMR---SVDCPYTVTFYGAL-FREGDVWICMEVMDT-SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVI  126 (283)
T ss_pred             HHHH---HcCCCCeeeeeEEE-ecCCcEEEEhhhhcc-cHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCee
Confidence            1111   12222223333333 234568999999986 45554321   11223333333322  22336788987 999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC----CCCCCCChHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG----VLVPTGDTTAVRRTA  526 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG----~~~~~~D~~al~~~~  526 (760)
                      |+|+||+||+++.  ++.++++|||++..+.......       ...+...+++++.....    ..+...|+++++..+
T Consensus       127 h~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l  197 (283)
T cd06617         127 HRDVKPSNVLINR--NGQVKLCDFGISGYLVDSVAKT-------IDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITM  197 (283)
T ss_pred             cCCCCHHHEEECC--CCCEEEeecccccccccccccc-------cccCCccccChhhcCCcccccccCccccchhhHHHH
Confidence            9999999999985  7899999999988765432110       01233445666655431    225668999998877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       198 ~~l~~  202 (283)
T cd06617         198 IELAT  202 (283)
T ss_pred             HHHHh
Confidence            66553

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.25  E-value=4e-11  Score=128.21  Aligned_cols=186  Identities=17%  Similarity=0.096  Sum_probs=114.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+.+......                                  +......+|+.
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~~   58 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD----------------------------------GIPISSLREIT   58 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC----------------------------------CCcchhhHHHH
Confidence            5799999999999998  59999999876431110                                  00001123444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+...+.+..++.+.. ...++||||++| ++.++.......++...+....  +-..+..+|..|++|+|
T Consensus        59 ~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~d  133 (309)
T cd07845          59 LLLNL----RHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRD  133 (309)
T ss_pred             HHHhC----CCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            44443    2333344444443322 456999999987 5666543222223333332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||+++.  ++.++|+|||++..+....... ..     ......+++++...- ...+...|++++...+.+++.
T Consensus       134 l~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~~-~~-----~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~  204 (309)
T cd07845         134 LKVSNLLLTD--KGCLKIADFGLARTYGLPAKPM-TP-----KVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLA  204 (309)
T ss_pred             CCHHHEEECC--CCCEEECccceeeecCCccCCC-Cc-----ccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHh
Confidence            9999999985  7899999999998775432110 00     011233555665432 334567899999887766653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.25  E-value=7.3e-11  Score=123.31  Aligned_cols=184  Identities=18%  Similarity=0.202  Sum_probs=115.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.|++|..++.....                                  .....+.+|..
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~e~~   50 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE----------------------------------GIPKTALREIK   50 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccc----------------------------------hhHHHHHHHHH
Confidence            4799999999999998  58999999876532221                                  00112233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||++| ++.+.........+...   ++..++. .+..+|..|++|+|
T Consensus        51 ~l~~l~----~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~-~l~~LH~~~i~H~d  123 (283)
T cd05118          51 LLKELN----HPNIIKLLDVF-RHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQ-GLAFCHSHGILHRD  123 (283)
T ss_pred             HHHHhc----CCCcchHHHhh-ccCCCEEEEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHH-HHHHHHHCCeeecC
Confidence            444432    11112222222 233567999999987 66654433222333333   3333333 46889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++++|||.+..+....+. +     ....++..++++++.... ..+...|++++...+.+++.
T Consensus       124 l~p~nili~~--~~~~~l~df~~~~~~~~~~~~-~-----~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~t  194 (283)
T cd05118         124 LKPENLLINT--EGVLKLADFGLARSFGSPVRP-Y-----THYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLS  194 (283)
T ss_pred             cCHHHEEECC--CCcEEEeeeeeeEecCCCccc-c-----cCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHh
Confidence            9999999985  789999999999888665411 1     001233445556655544 55677899999877766553

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.25  E-value=6e-11  Score=121.90  Aligned_cols=183  Identities=12%  Similarity=0.066  Sum_probs=116.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.++.|++|.||+++.  +|+.++||+........                                  .....+.+|..
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~e~~   51 (256)
T cd08530           6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ----------------------------------KEREDAVNEIR   51 (256)
T ss_pred             eeecCCCceeEEEEEECCCCCEEEEEEEehhhccH----------------------------------HHHHHHHHHHH
Confidence            5799999999999988  58999999865421100                                  00011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+..+    .+..-+.+...+ ......++||||++|.+|.++....   ....+...+...+  +-..+..+|..|++|
T Consensus        52 ~l~~l----~~~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h  126 (256)
T cd08530          52 ILASV----NHPNIISYKEAF-LDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILH  126 (256)
T ss_pred             HHHhC----CCCCchhhhhhh-ccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            33333    111111122222 2235679999999999998865331   1223444333332  223467899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||++++  ++.++|+|||++..+......        ...++..++.++.......++..|++++...+.+++
T Consensus       127 ~~l~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~--------~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~  195 (256)
T cd08530         127 RDLKSANILLVA--NDLVKIGDLGISKVLKKNMAK--------TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMA  195 (256)
T ss_pred             CCCCcceEEEec--CCcEEEeeccchhhhccCCcc--------cccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHH
Confidence            999999999986  789999999998777654111        112455667777766665667789999887766554

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.25  E-value=3.9e-11  Score=127.24  Aligned_cols=191  Identities=16%  Similarity=0.129  Sum_probs=113.8

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      ...||.|++|+||+|+.  +|+.||||+........                                  .+.....+|.
T Consensus        17 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~----------------------------------~~~~~~~~e~   62 (310)
T cd07865          17 LAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE----------------------------------GFPITALREI   62 (310)
T ss_pred             EEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC----------------------------------CchhHHHHHH
Confidence            36899999999999998  58999999764321100                                  0001122344


Q ss_pred             HHHHHHHHhcCCCCceeeceeee-------ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW-------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  446 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~-------e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~  446 (760)
                      +.+.++    .+...+.+..++.       ...+..++||||+++ .+.+........++...+...+  +-..+..+|.
T Consensus        63 ~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~  137 (310)
T cd07865          63 KILQLL----KHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHR  137 (310)
T ss_pred             HHHHhC----CCCCccceEEEEecccccccCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            444444    2222233333322       123446999999987 5555433222234444333332  2234788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRT  525 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~  525 (760)
                      +|++|+|++|.||+++.  ++.++|+|||++..+....... .... ....+...++++++...+. ..+..|++++...
T Consensus       138 ~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~  213 (310)
T cd07865         138 NKILHRDMKAANILITK--DGILKLADFGLARAFSLSKNSK-PNRY-TNRVVTLWYRPPELLLGERDYGPPIDMWGAGCI  213 (310)
T ss_pred             CCeeccCCCHHHEEECC--CCcEEECcCCCcccccCCcccC-CCCc-cCcccCccccCcHHhcCCcccCchhhhHHHHHH
Confidence            99999999999999985  7899999999998775433211 0000 0011223455666554322 3567899999887


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       214 l~el~t  219 (310)
T cd07865         214 MAEMWT  219 (310)
T ss_pred             HHHHHh
Confidence            766653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.24  E-value=8.8e-11  Score=124.34  Aligned_cols=185  Identities=17%  Similarity=0.166  Sum_probs=111.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||..+.....                                  ++....+.+|++
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----------------------------------~~~~~~~~~e~~   53 (294)
T PLN00009          8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQED----------------------------------EGVPSTAIREIS   53 (294)
T ss_pred             EEecCCCCEEEEEEEecCCCcEEEEEehhhcccc----------------------------------ccchHHHHHHHH
Confidence            5799999999999998  5899999975431100                                  001112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +..-+.+...+ ......++||||++| .+.+..... ....+...   ++..++ ..+..+|..|++|+
T Consensus        54 ~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~-~aL~~LH~~~i~H~  126 (294)
T PLN00009         54 LLKEMQ----HGNIVRLQDVV-HSEKRLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQIL-RGIAYCHSHRVLHR  126 (294)
T ss_pred             HHHhcc----CCCEeeEEEEE-ecCCeEEEEEecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHH-HHHHHHHhCCeeCC
Confidence            555442    22222222222 334567999999976 555543221 11123222   222333 34788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++. .++.++++|||++..+...... +.     ...+...++.++.... .......|++++...+.+++.
T Consensus       127 dl~p~nill~~-~~~~~kl~dfg~~~~~~~~~~~-~~-----~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~t  199 (294)
T PLN00009        127 DLKPQNLLIDR-RTNALKLADFGLARAFGIPVRT-FT-----HEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVN  199 (294)
T ss_pred             CCCcceEEEEC-CCCEEEEcccccccccCCCccc-cc-----cCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence            99999999984 3567999999999765432111 00     0012334556665544 334567899999877766654

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.24  E-value=6.8e-11  Score=126.39  Aligned_cols=185  Identities=12%  Similarity=0.109  Sum_probs=114.4

Q ss_pred             cccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||+|++|+||+|+.  +|+    .||+|+..+.....                                   ....+.
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~   57 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPK-----------------------------------ANVEFM   57 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHH-----------------------------------HHHHHH
Confidence            5799999999999987  454    57888766532111                                   001123


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|...+.++    .+..-+.+...+  ......++|||++++++.+.........+...+....  +...+..+|..|++
T Consensus        58 ~e~~~~~~l----~h~niv~~~~~~--~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iv  131 (303)
T cd05110          58 DEALIMASM----DHPHLVRLLGVC--LSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLV  131 (303)
T ss_pred             HHHHHHHhC----CCCCcccEEEEE--cCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCee
Confidence            444444443    222223333322  2345679999999999988754332223333322221  22347789999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  ++.++|+|||++..+.......-..    .......+++++.......+...|++++.-.+.+++
T Consensus       132 H~dikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~~----~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~  205 (303)
T cd05110         132 HRDLAARNVLVKS--PNHVKITDFGLARLLEGDEKEYNAD----GGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELM  205 (303)
T ss_pred             ccccccceeeecC--CCceEEccccccccccCcccccccC----CCccccccCCHHHhccCCCChHHHHHHHHHHHHHHH
Confidence            9999999999975  7889999999998775433210000    001123456666665555667789999987666554

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.24  E-value=7.7e-11  Score=122.81  Aligned_cols=194  Identities=14%  Similarity=0.116  Sum_probs=116.9

Q ss_pred             cccccccccEEEEEEEC---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|.+|.||+|.+.   ++.||||..+.........                      ....    +.....+.+|.
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~----------------------~~~~----~~~~~~~~~e~   59 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKD----------------------KRER----DKSIGDIVSEV   59 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccc----------------------cccc----hHHHHHHHHHH
Confidence            57999999999999993   6889999876532111000                      0000    00011122232


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHHHH--HHHHHHHh-CCc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQILS-HGF  449 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~L~qI~~-~Gf  449 (760)
                      ..+.   +.. +++++.-+.-+.......+++|||++|.+|.++...   ....++...+...+.+  ..+..+|. .|+
T Consensus        60 ~~l~---~~~-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i  135 (269)
T cd08528          60 TIIK---EQL-RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRI  135 (269)
T ss_pred             HHHh---hcC-CCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCce
Confidence            2222   222 233332222222334677999999999999886532   1122333333333222  23667784 689


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|.||+++.  ++.++|+|||++.........       ....+...++.+++...+..++..|++++...+.++
T Consensus       136 ~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l  206 (269)
T cd08528         136 VHRDLTPNNIMLGE--DDKVTITDFGLAKQKQPESKL-------TSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQM  206 (269)
T ss_pred             eecCCCHHHEEECC--CCcEEEecccceeeccccccc-------ccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHH
Confidence            99999999999985  789999999999887654310       112344456667776666667788999998776665


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       207 ~~  208 (269)
T cd08528         207 CT  208 (269)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.24  E-value=4.1e-11  Score=130.75  Aligned_cols=195  Identities=21%  Similarity=0.233  Sum_probs=115.7

Q ss_pred             hCCChhhhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchH
Q 004334          285 LGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV  361 (760)
Q Consensus       285 lG~~~~~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~  361 (760)
                      .+....++...|. ..+||+|++|+||+|+.  +|+.||||+........                              
T Consensus         6 ~~~~~~~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~------------------------------   55 (343)
T cd07851           6 LNKTVWEVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSA------------------------------   55 (343)
T ss_pred             hccceecccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchh------------------------------
Confidence            3333334444443 37899999999999999  58999999875432111                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeee-----ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH
Q 004334          362 AIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  436 (760)
Q Consensus       362 ~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~-----e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l  436 (760)
                          +....+.+|...+.++.    +...+.+...+.     ......++||||+ |.+|.++...  ..++...+...+
T Consensus        56 ----~~~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~  124 (343)
T cd07851          56 ----IHAKRTYRELRLLKHMD----HENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC--QKLSDDHIQFLV  124 (343)
T ss_pred             ----hHHHHHHHHHHHHHhcc----CCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHH
Confidence                00011122322222221    111111111111     1223479999999 5578776533  223433333322


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VL  513 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~  513 (760)
                        +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+......         ..+...+++++....+ ..
T Consensus       125 ~ql~~aL~~LH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~  193 (343)
T cd07851         125 YQILRGLKYIHSAGIIHRDLKPSNIAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLNWMHY  193 (343)
T ss_pred             HHHHHHHHHHHHCCeecCCCCHHHeEECC--CCCEEEccccccccccccccC---------CcccccccCHHHHhCCCCC
Confidence              223467899999999999999999986  889999999999877543211         1123345566655432 34


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l~  531 (760)
                      +...|+++++-.+.+++.
T Consensus       194 ~~~~DvwslGv~l~ellt  211 (343)
T cd07851         194 NQTVDIWSVGCIMAELLT  211 (343)
T ss_pred             CchHhHHHHHHHHHHHHh
Confidence            567899999877766654

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.3e-11  Score=126.36  Aligned_cols=191  Identities=20%  Similarity=0.185  Sum_probs=122.8

Q ss_pred             cccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ++|+- .|+|-|-||+||.|+.  ++--||+||....   ++.                              ......+
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKs---qi~------------------------------~~~v~~q   68 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKS---QIL------------------------------KTQVEHQ   68 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHH---HHH------------------------------Hhcchhh
Confidence            35663 8999999999999999  4889999986431   000                              0112223


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHH--HHHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY--AVESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~--lv~~~L~qI~~~  447 (760)
                      +++|....    .++.+ |++---.-|.....+.+|++||..++.+........ ..++...-+..  .+...+..+|..
T Consensus        69 lrREiEIq----s~L~h-pnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k  143 (281)
T KOG0580|consen   69 LRREIEIQ----SHLRH-PNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK  143 (281)
T ss_pred             hhheeEee----cccCC-ccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC
Confidence            34442111    11111 111111111223456699999999888776443212 12332222222  233346778999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      +++|||+||.|+|+..  +|.+++.|||-...-+...|..+        .+..+++.+++.+--..+..+|.+.++...+
T Consensus       144 ~VIhRdiKpenlLlg~--~~~lkiAdfGwsV~~p~~kR~tl--------cgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~y  213 (281)
T KOG0580|consen  144 RVIHRDIKPENLLLGS--AGELKIADFGWSVHAPSNKRKTL--------CGTLDYLPPEMVEGRGHDKFVDLWSLGVLCY  213 (281)
T ss_pred             CcccCCCCHHHhccCC--CCCeeccCCCceeecCCCCceee--------ecccccCCHhhcCCCCccchhhHHHHHHHHH
Confidence            9999999999999986  89999999999888776666544        4566778888888777777889999988777


Q ss_pred             HHHHH
Q 004334          528 FFLNS  532 (760)
Q Consensus       528 ~~l~~  532 (760)
                      +|+-.
T Consensus       214 eflvg  218 (281)
T KOG0580|consen  214 EFLVG  218 (281)
T ss_pred             HHHhc
Confidence            76643

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.24  E-value=7.3e-11  Score=143.53  Aligned_cols=189  Identities=13%  Similarity=0.027  Sum_probs=120.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|+||.||+|+.  .++.||+|+.......                                  ......+..|+.
T Consensus        19 ~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~----------------------------------e~~~~~~~~EI~   64 (1021)
T PTZ00266         19 KKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLK----------------------------------EREKSQLVIEVN   64 (1021)
T ss_pred             EEEecCCCeEEEEEEECCCCeEEEEEEEeccccC----------------------------------HHHHHHHHHHHH
Confidence            6899999999999999  5889999987642110                                  011123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhC---
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSH---  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~---  447 (760)
                      .+.++.    +...|.+...+... ....+|||||++|++|.+++...   ...++...+...+  +-..|..+|..   
T Consensus        65 IL~~L~----HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~  140 (1021)
T PTZ00266         65 VMRELK----HKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDG  140 (1021)
T ss_pred             HHHHcC----CCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            565552    22223333333222 23468999999999998865321   1224444333322  22336778874   


Q ss_pred             ----CccccCCCCCcEEEecc---------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004334          448 ----GFFHADPHPGNIAVDDV---------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       448 ----GffHaDpHPGNILV~~~---------------~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~  508 (760)
                          +|+|+|+||.|||+...               ..+.++|+|||++..+......       ....+++.+++++++
T Consensus       141 ~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~-------~s~vGTp~YmAPEvL  213 (1021)
T PTZ00266        141 PNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMA-------HSCVGTPYYWSPELL  213 (1021)
T ss_pred             cccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccc-------cccCCCccccCHHHH
Confidence                59999999999999631               1235899999999876543211       122467788888877


Q ss_pred             Hc--CCCCCCCChHHHHHHHHHHHHH
Q 004334          509 QM--GVLVPTGDTTAVRRTAQFFLNS  532 (760)
Q Consensus       509 ~l--G~~~~~~D~~al~~~~~~~l~~  532 (760)
                      .-  ...++..|+++|.-.+.+++..
T Consensus       214 ~ge~~~~s~KSDVWSLG~ILYELLTG  239 (1021)
T PTZ00266        214 LHETKSYDDKSDMWALGCIIYELCSG  239 (1021)
T ss_pred             hccCCCCCchhHHHHHHHHHHHHHHC
Confidence            42  3356778999999888877653

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.23  E-value=9.4e-11  Score=123.90  Aligned_cols=187  Identities=17%  Similarity=0.156  Sum_probs=116.1

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|...       ...||+|+.+.+....                                  + ...+
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~----------------------------------~-~~~~   62 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEK----------------------------------D-LSDL   62 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHH----------------------------------H-HHHH
Confidence            68999999999999972       2679999876532211                                  0 0112


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l  436 (760)
                      .+|+..+.++.   .+..-+.+..++ ......+++|||++|++|.++.....               ..++...+...+
T Consensus        63 ~~E~~~l~~l~---~h~~i~~~~~~~-~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  138 (293)
T cd05053          63 VSEMEMMKMIG---KHKNIINLLGVC-TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFA  138 (293)
T ss_pred             HHHHHHHHhhc---CCCCeeeEEEEE-cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHH
Confidence            34444444431   122223333333 33456799999999999988753211               112222222222


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                        +-..+..+|..|++|+|++|.||++++  ++.++|+|||.+..+.........    ........+++++....+..+
T Consensus       139 ~qi~~al~~LH~~~ivH~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~  212 (293)
T cd05053         139 YQVARGMEFLASKKCIHRDLAARNVLVTE--DHVMKIADFGLARDIHHIDYYRKT----TNGRLPVKWMAPEALFDRVYT  212 (293)
T ss_pred             HHHHHHHHHHHHCCccccccceeeEEEcC--CCeEEeCccccccccccccceecc----CCCCCCccccCHHHhccCCcC
Confidence              223468899999999999999999986  889999999999876543210000    000112345667766666667


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      ...|++++.-.+.+++
T Consensus       213 ~~~Di~slG~il~el~  228 (293)
T cd05053         213 HQSDVWSFGVLLWEIF  228 (293)
T ss_pred             cccceeehhhHHHHHh
Confidence            7889999987766543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.23  E-value=2.3e-11  Score=127.79  Aligned_cols=185  Identities=17%  Similarity=0.173  Sum_probs=111.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|+||+|+.  +|+.||||..+......                                  +....+.+|++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~E~~   51 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GVPSTAIREIS   51 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEcccccccc----------------------------------ccchHHHHHHH
Confidence            6899999999999998  58999999765421100                                  00112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+ ......+++|||+++ ++.++.... ...++...+.....  -..+..+|..|++|+|
T Consensus        52 ~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~  125 (284)
T cd07860          52 LLKELN----HPNIVKLLDVI-HTENKLYLVFEFLHQ-DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRD  125 (284)
T ss_pred             HHHhcC----CCCCcchhhhc-ccCCcEEEEeecccc-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            555542    22222222222 234567999999975 666654322 22344444333322  2346889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|+||++++  ++.++++|||.+..+.........      ......+++++.... ...+...|++++...+.+++.
T Consensus       126 l~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t  196 (284)
T cd07860         126 LKPQNLLINT--EGAIKLADFGLARAFGVPVRTYTH------EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT  196 (284)
T ss_pred             CCHHHEEECC--CCCEEEeeccchhhcccCcccccc------ccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999986  889999999998766433211000      011233444543322 223456799998877766653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.23  E-value=1.7e-10  Score=115.67  Aligned_cols=185  Identities=20%  Similarity=0.164  Sum_probs=114.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++|++|++|+||++.+  +|+.|+||+.+.....                                   +....+.+|..
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------~~~~~~~~e~~   49 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-----------------------------------KQREEFLREIR   49 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  3799999997764221                                   01122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    . ++++.-...+....+..+++|||++|.+|.++........+...+.....  -..+..+|..|++|+|+
T Consensus        50 ~~~~~----~-~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di  124 (225)
T smart00221       50 ILKKL----K-HPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDL  124 (225)
T ss_pred             HHHhC----C-CCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            55544    1 12211111122334678999999999999887543221133333333222  22367789999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~-~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|.||++++  ++.++|+|||....+....-...     .........+.+++. .....++..|++++...+.+++
T Consensus       125 ~~~ni~v~~--~~~~~l~d~g~~~~~~~~~~~~~-----~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~  194 (225)
T smart00221      125 KPENILLGM--DGLVKLADFGLARFIHRDLAALL-----KTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELL  194 (225)
T ss_pred             CHHHEEEcC--CCCEEEeeCceeeEecCcccccc-----cceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHH
Confidence            999999986  68999999999988765430000     001122334445544 3334445678888876555443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.22  E-value=9.4e-11  Score=118.01  Aligned_cols=174  Identities=21%  Similarity=0.221  Sum_probs=113.2

Q ss_pred             cccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004334          305 SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFA  382 (760)
Q Consensus       305 SiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~  382 (760)
                      ++|+||+|+.  +|+.|++|+.+.+....-                                   ...+.+|++.+.++ 
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----------------------------------~~~~~~e~~~~~~l-   44 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-----------------------------------RERILREISILKKL-   44 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-----------------------------------HHHHHHHHHHHHhC-
Confidence            5899999999  479999999876432110                                   11233444444443 


Q ss_pred             HhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCc
Q 004334          383 SNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGN  458 (760)
Q Consensus       383 ~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDpHPGN  458 (760)
                          ++++  +++++.  ......+++|||++|.+|.++...... .+...+...+.  -..+..+|..|++|+|++|.|
T Consensus        45 ----~~~~--i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~n  117 (244)
T smart00220       45 ----KHPN--IVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRGR-LSEDEARFYARQILSALEYLHSNGIIHRDLKPEN  117 (244)
T ss_pred             ----CCCc--HHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHH
Confidence                1111  121111  122567999999999999886543221 34443333322  234678899999999999999


Q ss_pred             EEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          459 IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       459 ILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |++++  ++.++++|||.+..+.....       .....+.+.++.++....+..++..|++++...+.+++
T Consensus       118 i~~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~  180 (244)
T smart00220      118 ILLDE--DGHVKLADFGLARQLDPGGL-------LTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELL  180 (244)
T ss_pred             eEECC--CCcEEEccccceeeeccccc-------cccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            99986  68999999999998876431       11123455566677766666677889999887665544

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.22  E-value=7.3e-11  Score=125.08  Aligned_cols=187  Identities=16%  Similarity=0.127  Sum_probs=111.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||+|+.  +|+.||||+.+......                                  .....+.+|..
T Consensus        13 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   58 (302)
T cd07864          13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE----------------------------------GFPITAIREIK   58 (302)
T ss_pred             eeecccCCEEEEEEEECCCCcEEEEEEEeeccccc----------------------------------CchHHHHHHHH
Confidence            6899999999999999  58999999876532110                                  00011223444


Q ss_pred             HHHHHHHhcCCCCceeeceeeec---------cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE---------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e---------~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~  445 (760)
                      .+.++    .+..-+.+..++.+         ..+..+|+|||++| .+.+.........+...+...+.  -..+..+|
T Consensus        59 ~~~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH  133 (302)
T cd07864          59 ILRQL----NHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCH  133 (302)
T ss_pred             HHHhC----CCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            44433    12222222222211         12357899999998 44443322222344443333322  23367899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  524 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~  524 (760)
                      ..|++|+|++|+||++++  ++.++|+|||.+..+.......+..     ......+++++.... ...++..|++++..
T Consensus       134 ~~~i~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~Di~slG~  206 (302)
T cd07864         134 KKNFLHRDIKCSNILLNN--KGQIKLADFGLARLYNSEESRPYTN-----KVITLWYRPPELLLGEERYGPAIDVWSCGC  206 (302)
T ss_pred             hCCeecCCCCHHHEEECC--CCcEEeCcccccccccCCccccccc-----ceeccCccChHHhcCCCCCCchhHHHHHHH
Confidence            999999999999999985  7899999999998775543211100     011223445554432 23456789999887


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       207 ~~~el~~  213 (302)
T cd07864         207 ILGELFT  213 (302)
T ss_pred             HHHHHHh
Confidence            7665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.22  E-value=1.1e-10  Score=120.16  Aligned_cols=186  Identities=15%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++++.|++|.||++..  +|..||+|.....-...                                  .....+.+|+.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~E~~   51 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPV----------------------------------KEKEASKKEVI   51 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccc----------------------------------hhhHHHHHHHH
Confidence            6899999999999999  58999999754310000                                  00112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .++++.    +..-+.+...+ ......+++|||++|.+|.++..... ...+...+....  +...+..+|..|++|+|
T Consensus        52 ~l~~~~----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~d  126 (257)
T cd08225          52 LLAKMK----HPNIVTFFASF-QENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRD  126 (257)
T ss_pred             HHHhCC----CCChhhhhhee-ccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence            555442    21112222222 23456799999999999988654322 123333332222  22346788999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||++++ .+..++++|||.+..+.......      ....+...+++++....+..+...|++++...+.+++
T Consensus       127 l~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~  196 (257)
T cd08225         127 IKSQNIFLSK-NGMVAKLGDFGIARQLNDSMELA------YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELC  196 (257)
T ss_pred             CCHHHEEEcC-CCCeEEecccccchhccCCcccc------cccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHH
Confidence            9999999985 23457999999988775432211      1123556677777776666777889999987765554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.22  E-value=1.5e-10  Score=125.48  Aligned_cols=185  Identities=15%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             cccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      ++||.|++|+||+|+..         +..||+|+.+.....                                   +...
T Consensus        18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~   62 (334)
T cd05100          18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD-----------------------------------KDLS   62 (334)
T ss_pred             ceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCH-----------------------------------HHHH
Confidence            68999999999999851         236999976542111                                   1111


Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHH--
Q 004334          370 VLYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKR--  431 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~--  431 (760)
                      .+.+|...+.++.    ++++ +.+...+ ......+++|||++|++|.++.....               .......  
T Consensus        63 ~~~~E~~~l~~l~----~h~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  137 (334)
T cd05100          63 DLVSEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLV  137 (334)
T ss_pred             HHHHHHHHHHhhc----CCCCeeeeeEEE-ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHH
Confidence            2344555555442    2222 2222222 22346799999999999988754221               0122222  


Q ss_pred             -HHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004334          432 -LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       432 -la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l  510 (760)
                       ++..++ ..+..+|..|++|+|++|.||++++  ++.++|+|||.+..+.........    ........+++++....
T Consensus       138 ~~~~qi~-~al~~LH~~givH~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~  210 (334)
T cd05100         138 SCAYQVA-RGMEYLASQKCIHRDLAARNVLVTE--DNVMKIADFGLARDVHNIDYYKKT----TNGRLPVKWMAPEALFD  210 (334)
T ss_pred             HHHHHHH-HHHHHHHHCCeeccccccceEEEcC--CCcEEECCcccceecccccccccc----cCCCcCceEcCHHHhcc
Confidence             222222 3467899999999999999999985  789999999998876542211000    00011234667776665


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      +..+...|++++.-.+.+++
T Consensus       211 ~~~~~~~Di~slG~il~el~  230 (334)
T cd05100         211 RVYTHQSDVWSFGVLLWEIF  230 (334)
T ss_pred             CCcCchhhhHHHHHHHHHHH
Confidence            66667789999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.22  E-value=1.5e-10  Score=135.99  Aligned_cols=186  Identities=14%  Similarity=0.118  Sum_probs=117.1

Q ss_pred             cccccccccEEEEEEE-C-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +-||.|+||+||.|.+ . |.+||+|.+.-.-+                                    +-.+.+.+|..
T Consensus        43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de------------------------------------~~L~~v~~EI~   86 (738)
T KOG1989|consen   43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDE------------------------------------EALNAVKREID   86 (738)
T ss_pred             EEEccCCcEEEEEEEecCCCceeeeeeeecCCH------------------------------------HHHHHHHHHHH
Confidence            5799999999999999 4 49999996543211                                    01122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeee-----ccC----CCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHHHHHH--HHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFW-----EYT----TPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQI  444 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~-----e~s----t~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--L~qI  444 (760)
                      .|+++.    ++++|.  ..|.     ..+    -+..|.||||.|+.|-|+... .+.++...++.+.+.+.+  +..|
T Consensus        87 ~MK~L~----gh~nIV--~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~m  160 (738)
T KOG1989|consen   87 IMKLLS----GHKNIV--SYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAM  160 (738)
T ss_pred             HHHHhc----CCCcee--eEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence            565553    333321  1111     001    234799999999999987642 233466677766654443  6778


Q ss_pred             HhCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccC--hhhHHHHHHHHHHHhhc-CH----HHHHHHHHHcCCCCC
Q 004334          445 LSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS--PNIREGLLEAFYGIYEK-DA----DKVLQAMVQMGVLVP  515 (760)
Q Consensus       445 ~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~--~~~r~~l~~l~~al~~~-D~----~~v~~~l~~lG~~~~  515 (760)
                      |...  ++|||||-+|||+..  +|..+|||||.+....  ++......-+=.-+... ++    ..|++.+..++ +.+
T Consensus       161 H~~~pPiIHRDLKiENvLls~--~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~p-I~e  237 (738)
T KOG1989|consen  161 HYLKPPIIHRDLKIENVLLSA--DGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLP-IGE  237 (738)
T ss_pred             hcCCCccchhhhhhhheEEcC--CCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCC-Ccc
Confidence            8877  999999999999986  8899999999986542  22222221111111111 22    23444444444 477


Q ss_pred             CCChHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFF  529 (760)
Q Consensus       516 ~~D~~al~~~~~~~  529 (760)
                      +.|+||++-.++.+
T Consensus       238 KsDIWALGclLYkL  251 (738)
T KOG1989|consen  238 KSDIWALGCLLYKL  251 (738)
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999999877655

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.22  E-value=1.1e-10  Score=123.10  Aligned_cols=185  Identities=16%  Similarity=0.106  Sum_probs=114.0

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..+|.|++|.||++..       ++..|++|...... ..                                   ....+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-~~-----------------------------------~~~~~   54 (280)
T cd05092          11 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-ES-----------------------------------ARQDF   54 (280)
T ss_pred             cccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC-HH-----------------------------------HHHHH
Confidence            5799999999999974       35688898644311 00                                   01123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc--------------CCCHHHHHHHH-
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--------------GVDRKRLGRYA-  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~--------------g~d~~~la~~l-  436 (760)
                      .+|.+.+.++    .+..-+.+.. +.......+++|||++|++|.++......              .++...+...+ 
T Consensus        55 ~~e~~~l~~l----~h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  129 (280)
T cd05092          55 QREAELLTVL----QHQHIVRFYG-VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIAS  129 (280)
T ss_pred             HHHHHHHhcC----CCCCCceEEE-EEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHH
Confidence            3444444443    2222222222 22334567999999999999887542211              12223332222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          437 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       437 -v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                       +-..+..+|..|++|+|++|.||++++  ++.++|.|||++..+.........    ........+++++....+..+.
T Consensus       130 qi~~al~~LH~~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~  203 (280)
T cd05092         130 QIASGMVYLASLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRVG----GRTMLPIRWMPPESILYRKFTT  203 (280)
T ss_pred             HHHHHHHHHHHCCeecccccHhhEEEcC--CCCEEECCCCceeEcCCCceeecC----CCccccccccCHHHhccCCcCc
Confidence             223367889999999999999999985  789999999998766433211100    0011134566777766666677


Q ss_pred             CCChHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFL  530 (760)
Q Consensus       516 ~~D~~al~~~~~~~l  530 (760)
                      ..|++++.-.+.+++
T Consensus       204 ~~Di~slG~il~el~  218 (280)
T cd05092         204 ESDIWSFGVVLWEIF  218 (280)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            789999987766654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.22  E-value=2.2e-11  Score=135.62  Aligned_cols=186  Identities=13%  Similarity=0.110  Sum_probs=133.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|+||-++..++  ++..+|+|..+-.-                                  ..+...+...+|..
T Consensus        10 ~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~----------------------------------~t~~~r~~A~~E~~   55 (426)
T KOG0589|consen   10 RQVGRGAFGSALLVRHKSDDKLYVLKKINLEK----------------------------------LTEPERRSAIQEMD   55 (426)
T ss_pred             hhcCccccchhhhhhhccCCceEEEEEEeccc----------------------------------cCchhhHHHHHHHH
Confidence            5699999999988887  57899999654310                                  00111223345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHHH--HHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY--LEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~~--L~qI~~~GffHaD  453 (760)
                      -+.++    .+..-|..+..+.+-..-.+|||+|++|+++.+...-.+ .-++.+++....++..  +..+|+..++|+|
T Consensus        56 lis~~----~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRD  131 (426)
T KOG0589|consen   56 LLSKL----LHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRD  131 (426)
T ss_pred             HHHhc----cCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55543    344445566555443333899999999999999664333 4456677777666544  6779999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+.|||++.  ++.|+|-|||+++.+.++.-  +    ..-+-+++.++.+++.+---.....|+++++=.++++.
T Consensus       132 lK~~Nifltk--~~~VkLgDfGlaK~l~~~~~--~----a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~  200 (426)
T KOG0589|consen  132 LKCANIFLTK--DKKVKLGDFGLAKILNPEDS--L----ASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMC  200 (426)
T ss_pred             chhhhhhccc--cCceeecchhhhhhcCCchh--h----hheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHH
Confidence            9999999986  88899999999999988751  2    23346899999999988666667889999986666543

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.21  E-value=9e-11  Score=122.57  Aligned_cols=185  Identities=18%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|.+|.||+|+.  +|+.|++|+......+.                                  .+...+..|..
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   50 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEE----------------------------------GIPSTALREIS   50 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccc----------------------------------cccHHHHHHHH
Confidence            4689999999999999  48999999987643110                                  00011122323


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +...+.+...+ ......+++|||+++ +|.++........+...+...+  +-..+..+|..|++|+|+
T Consensus        51 ~l~~~~----~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l  124 (282)
T cd07829          51 LLKELK----HPNIVKLLDVI-HTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDL  124 (282)
T ss_pred             HHHhcC----CCCHHHHHhhh-hcCCceEEEecCcCc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            233221    11111222222 122567999999986 7887654332234433333322  223468899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++++  ++.++|.|||.+.......... .     ....+..++++++...+ ..++..|++++.-.+.+++.
T Consensus       125 ~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~-~-----~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~  194 (282)
T cd07829         125 KPQNILINR--DGVLKLADFGLARAFGIPLRTY-T-----HEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMIT  194 (282)
T ss_pred             ChheEEEcC--CCCEEEecCCcccccCCCcccc-C-----ccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHh
Confidence            999999986  7899999999988765443211 0     01123334556655444 56677899999877766553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PRK10345 hypothetical protein; Provisional

Probab=99.21  E-value=1.1e-10  Score=120.20  Aligned_cols=142  Identities=10%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .++||+|++|.||.-..++.. +||+.+++-..                                    ..+.+.+|.+.
T Consensus         7 ~~~LG~G~~~~Vy~hp~~~~k-~IKv~~~~~~~------------------------------------~~~~~~rEi~~   49 (210)
T PRK10345          7 QSPLGTGRHRKCYAHPEDAQR-CIKIVYHRGDG------------------------------------GDKEIRRELKY   49 (210)
T ss_pred             cceecCCCceEEEECCCCcCe-EEEEEeccccc------------------------------------hHHHHHHHHHH
Confidence            478999999999961124555 69998763110                                    01234567666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCe------EEEEee--cCCCchhhhhhhhhcCCCH-HHHHHHHHHHHHHHHHhCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQ------ILTMEY--VPGIKINRIQSLDELGVDR-KRLGRYAVESYLEQILSHG  448 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~------vLVME~--ieG~~L~d~~~l~~~g~d~-~~la~~lv~~~L~qI~~~G  448 (760)
                      +..+.+.-.+  +-.|++.|..+.+..      .++|||  ++|++|.++.....  ++. ......++..+++.+|.+|
T Consensus        50 l~~L~~~~~~--h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~~--~~e~~~~~~~~L~~l~~yLh~~~  125 (210)
T PRK10345         50 YAHLSRRLID--WSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR--YEEDVAQLRQLLKKLKRYLLDNR  125 (210)
T ss_pred             HHHhhccCCC--CcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHccc--ccHhHHHHHHHHHHHHHHHHHCC
Confidence            6666442222  334777776554442      278999  56799999764322  222 2234556667778999999


Q ss_pred             ccccCCCCCcEEEeccC--CCcEEEEeecceecc
Q 004334          449 FFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSI  480 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~--~g~l~LiDFG~v~~l  480 (760)
                      ++|+|+||.||+++..+  +++++|+||+-...+
T Consensus       126 IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        126 IVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             EeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            99999999999997422  347999994444433

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=99.21  E-value=5.3e-10  Score=116.36  Aligned_cols=184  Identities=21%  Similarity=0.206  Sum_probs=122.5

Q ss_pred             ccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +|.+|--+.||+|.. ++..||||+.+....+--.        +-.++.. .|.......+...++...   ...|-+|+
T Consensus        55 ~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~--------~~~Yi~g-d~Rf~~~~~~rr~lv~~W---~~kEf~NL  122 (268)
T COG1718          55 CISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKR--------IRRYIQG-DPRFRNSRSNRRKLVFAW---ARKEFRNL  122 (268)
T ss_pred             eecCCcceEEEeeccCCCceEEEEEEehhhhhhhh--------HHHHHhc-ChhhhcCCCCHHHHHHHH---HHHHHHHH
Confidence            899999999999998 7999999999986433211        1122111 111111122333333322   35789999


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCC---CHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---DRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~---d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      .++.+     .+|.+|+++  ..-+.||+||||... -.-.-.+...+.   +...+-+.+++.+-.+....|++|+|+.
T Consensus       123 ~R~~e-----AGVrvP~Pi--~~~~nVLvMEfIg~~-g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLS  194 (268)
T COG1718         123 KRAYE-----AGVRVPEPI--AFRNNVLVMEFIGDD-GLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLS  194 (268)
T ss_pred             HHHHH-----cCCCCCCce--eecCCeEEEEeccCC-CCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccch
Confidence            99865     358999999  456789999999654 111111222222   2333444455554455556999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      .-|||+.   ++.+++||||.+..++...-.       .++.+|...+...+...|+-
T Consensus       195 EyNiL~~---~~~p~iID~~QaV~~~hp~a~-------e~L~RDv~Ni~~fF~r~gv~  242 (268)
T COG1718         195 EYNILVH---DGEPYIIDVSQAVTIDHPNAF-------EFLERDVRNIARFFRRKGVE  242 (268)
T ss_pred             hhheEEE---CCeEEEEECccccccCCCchH-------HHHHHHHHHHHHHHHHcCCC
Confidence            9999997   689999999999988765432       33567999999999888863

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.21  E-value=5.8e-11  Score=137.01  Aligned_cols=200  Identities=13%  Similarity=0.077  Sum_probs=116.5

Q ss_pred             cccccccccEEEEEEEC---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|+||.||+|.++   ++.+++|........    .....+.+++....               .......+.+|+
T Consensus       154 ~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~~---------------~~~~~~~~~~Ei  214 (501)
T PHA03210        154 DDLPAGAFGKIFICALRASTEEAEARRGVNSTNQG----KPKCERLIAKRVKA---------------GSRAAIQLENEI  214 (501)
T ss_pred             eEecCCCCcceEEEEEeccchhhhhhhcccccccc----chhhhhhHhHHhhc---------------chHHHHHHHHHH
Confidence            68999999999999872   444444422211110    11111111111100               012334466787


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC----CCHH---HHHHHHHHHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----VDRK---RLGRYAVESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g----~d~~---~la~~lv~~~L~qI~~~G  448 (760)
                      ..+.++.    +..-+.+-.++ +.....+++||++.+. +.++.......    ....   .++..++ ..+..+|..|
T Consensus       215 ~il~~l~----HpnIv~l~~~~-~~~~~~~lv~e~~~~~-l~~~l~~~~~~~~~~~~~~~~~~i~~ql~-~aL~yLH~~g  287 (501)
T PHA03210        215 LALGRLN----HENILKIEEIL-RSEANTYMITQKYDFD-LYSFMYDEAFDWKDRPLLKQTRAIMKQLL-CAVEYIHDKK  287 (501)
T ss_pred             HHHHhCC----CCCcCcEeEEE-EECCeeEEEEeccccC-HHHHHhhccccccccccHHHHHHHHHHHH-HHHHHHHhCC
Confidence            7777662    22223333333 3445679999998764 33332111110    0111   2222222 3478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.|||++.  ++.++|+|||++..+.......     ..-..++..++++++...+..+...|++++.-.+.+
T Consensus       288 IiHrDLKP~NILl~~--~~~vkL~DFGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  360 (501)
T PHA03210        288 LIHRDIKLENIFLNC--DGKIVLGDFGTAMPFEKEREAF-----DYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLD  360 (501)
T ss_pred             eecCCCCHHHEEECC--CCCEEEEeCCCceecCcccccc-----cccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHH
Confidence            999999999999985  8899999999998875432110     001234566677777766666777899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       361 ll~  363 (501)
T PHA03210        361 MLS  363 (501)
T ss_pred             HHH
Confidence            664

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.20  E-value=7.5e-11  Score=133.46  Aligned_cols=184  Identities=17%  Similarity=0.165  Sum_probs=125.4

Q ss_pred             cccccccccEEEEEEE--C-C---eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~-G---~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +-+|+|.||.||+|++  . +   .+||||..+-.-                                 ....+-...+.
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~---------------------------------~~~~~~~~e~m  209 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS---------------------------------ELTKEQIKEFM  209 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccc---------------------------------cccHHHHHHHH
Confidence            6799999999999999  2 3   238999644300                                 00122233457


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +||+-|..+     ++++|.--.-+-....+.+||||+|.|++|.++..-....++..+.....  +..-+.+||..+++
T Consensus       210 ~EArvMr~l-----~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~I  284 (474)
T KOG0194|consen  210 KEARVMRQL-----NHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCI  284 (474)
T ss_pred             HHHHHHHhC-----CCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCc
Confidence            888888875     33333322223356678899999999999999765443335544444443  33448889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~-l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      |||+-..|.|+..  ++.+++.|||++..-+...... ..       .=-...++++.++.|..++..|++++...+.++
T Consensus       285 HRDIAARNcL~~~--~~~vKISDFGLs~~~~~~~~~~~~~-------klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Ei  355 (474)
T KOG0194|consen  285 HRDIAARNCLYSK--KGVVKISDFGLSRAGSQYVMKKFLK-------KLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEI  355 (474)
T ss_pred             chhHhHHHheecC--CCeEEeCccccccCCcceeeccccc-------cCcceecChhhhccCccccccchhheeeeEEee
Confidence            9999999999985  5668999999976654211111 11       123567789999999999999999887654433

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.20  E-value=5.6e-11  Score=126.12  Aligned_cols=192  Identities=13%  Similarity=0.074  Sum_probs=110.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+.........                                  ......+|..
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~----------------------------------~~~~~~~e~~   59 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDG----------------------------------FPITALREIK   59 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCC----------------------------------cchhHHHHHH
Confidence            6799999999999998  589999998754321110                                  0001123444


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-------CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-------st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++.    +...+.+...+.+.       ....+++|||+++. +.+.........+...+...+  +-..+..+|..
T Consensus        60 ~l~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~-l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~  134 (311)
T cd07866          60 ILKKLK----HPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHD-LSGLLENPSVKLTESQIKCYMLQLLEGINYLHEN  134 (311)
T ss_pred             HHHhcC----CCCccchhhheecccccccccCceEEEEEecCCcC-HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            444331    21112222222111       22358999999874 433322222223433333322  22347889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH-----HHHHHhhcCHHHHHHHHHHcC-CCCCCCChHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE-----AFYGIYEKDADKVLQAMVQMG-VLVPTGDTTA  521 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~-----l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~a  521 (760)
                      |++|+|++|+||++++  ++.++|+|||++..+..........     .......++..++++++...+ ...+..|+++
T Consensus       135 ~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~s  212 (311)
T cd07866         135 HILHRDIKAANILIDN--QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWG  212 (311)
T ss_pred             CeecCCCCHHHEEECC--CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHH
Confidence            9999999999999986  8899999999998765432110000     000001223445666655432 3456789999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      +...+.+++.
T Consensus       213 lG~il~el~~  222 (311)
T cd07866         213 IGCVFAEMFT  222 (311)
T ss_pred             HHHHHHHHHh
Confidence            9887766654

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.20  E-value=1.3e-10  Score=121.54  Aligned_cols=183  Identities=13%  Similarity=0.081  Sum_probs=114.9

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .-+|.|++|.||+|+..       .+.|++|+....-.                                   .+....+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-----------------------------------~~~~~~~   55 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-----------------------------------ENLQSEF   55 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc-----------------------------------hHHHHHH
Confidence            56999999999999962       36799996533110                                   1122234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc--------CCCHHHHHHHH--HHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL--------GVDRKRLGRYA--VES  439 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~--------g~d~~~la~~l--v~~  439 (760)
                      .+|++.++++.    + ++  +++++.  ......++||||++|++|.++......        .+........+  +-.
T Consensus        56 ~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  128 (275)
T cd05046          56 RRELDMFRKLS----H-KN--VVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIAL  128 (275)
T ss_pred             HHHHHHHHhcC----C-cc--eeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHH
Confidence            55666666652    2 22  233332  223457999999999999987643221        23333333222  223


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      .+..+|..|++|+|++|.||+++.  ++.+++.|||+..............     ......+++++....+...+..|+
T Consensus       129 ~l~~LH~~~i~H~dlkp~Nili~~--~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~Di  201 (275)
T cd05046         129 GMDHLSNARFVHRDLAARNCLVSS--QREVKVSLLSLSKDVYNSEYYKLRN-----ALIPLRWLAPEAVQEDDFSTKSDV  201 (275)
T ss_pred             HHHHhhhcCcccCcCccceEEEeC--CCcEEEcccccccccCcccccccCC-----ceeEEeecChhhhccCCCCchhhH
Confidence            478899999999999999999986  7899999999886543221110000     011223566666666666777899


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++...+.+++
T Consensus       202 ~slG~~l~~l~  212 (275)
T cd05046         202 WSFGVLMWEVF  212 (275)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.19  E-value=3.1e-10  Score=118.87  Aligned_cols=188  Identities=19%  Similarity=0.157  Sum_probs=115.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|..
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~~~~~~e~~   50 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE----------------------------------GIPLSTLREIA   50 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccc----------------------------------hhhhhHHHHHH
Confidence            5689999999999999  48999999876532211                                  00011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeec----cCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e----~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+.++.. +.+..-+.+...+..    .+...+++|||++| .+.++.... ....+...+...+  +-..+..+|..|+
T Consensus        51 ~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i  128 (287)
T cd07838          51 LLKQLES-FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRI  128 (287)
T ss_pred             HHHHhhc-cCCCCcceEEEEEeeccCCCCceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            3333321 112222222222221    11237899999987 576654322 1223434333322  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|++|+||+++.  ++.++|+|||.+..++......      . ..+...+++++....+..+...|++++.-.+.++
T Consensus       129 ~h~~l~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~-~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l  199 (287)
T cd07838         129 VHRDLKPQNILVTS--DGQVKIADFGLARIYSFEMALT------S-VVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAEL  199 (287)
T ss_pred             eeccCChhhEEEcc--CCCEEEeccCcceeccCCcccc------c-ccccccccChHHhccCCCCCcchhhhHHHHHHHH
Confidence            99999999999986  7899999999998875432110      0 0123345666666666667788999998877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       200 ~~  201 (287)
T cd07838         200 FR  201 (287)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.19  E-value=7.8e-11  Score=123.69  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=111.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+...+....                                  .....+.+|..
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~~~~~E~~   50 (283)
T cd07835           5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE----------------------------------GVPSTAIREIS   50 (283)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc----------------------------------cchhHHHHHHH
Confidence            4689999999999998  69999999876432110                                  00011233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+...+. .....+++|||+++ ++.++..... ..++...+....  +-..+..+|..|++|+|
T Consensus        51 ~l~~l~----~~~iv~~~~~~~-~~~~~~iv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~d  124 (283)
T cd07835          51 LLKELN----HPNIVRLLDVVH-SENKLYLVFEFLDL-DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRD  124 (283)
T ss_pred             HHHhcC----CCCccCHhheec-cCCeEEEEEeccCc-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCC
Confidence            444442    222223333322 23567999999965 6777543222 123444333322  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++|.||++++  ++.++|+|||.+..+....+....      ......+++++.... .......|+++++..+.+++.
T Consensus       125 l~p~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~------~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~  195 (283)
T cd07835         125 LKPQNLLIDR--EGALKLADFGLARAFGVPVRTYTH------EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVN  195 (283)
T ss_pred             CCHHHEEEcC--CCcEEEeecccccccCCCccccCc------cccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHh
Confidence            9999999986  889999999998776543221000      011233445554332 233556789998877766554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.18  E-value=3e-10  Score=118.78  Aligned_cols=183  Identities=20%  Similarity=0.229  Sum_probs=111.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|.|++|+||+|+.  +|+.||||+.+.......                                 +.  ...+|..
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~---------------------------------~~--~~~~e~~   49 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLE---------------------------------QV--NNLREIQ   49 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCch---------------------------------hh--hHHHHHH
Confidence            4689999999999998  689999998654321110                                 00  0112333


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaD  453 (760)
                      .+.++.   .+...+.+...+.+- ....+++|||++| ++.+........++...+...+.+  ..+..+|..|++|+|
T Consensus        50 ~l~~l~---~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~d  125 (282)
T cd07831          50 ALRRLS---PHPNILRLIEVLFDRKTGRLALVFELMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRD  125 (282)
T ss_pred             HHhhcC---CCCCccceEEEEecCCCCcEEEEEecCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecc
Confidence            333331   122223333333322 1567999999987 454443222223344443333322  347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++|.||+++.   +.++++|||.+..+.......  .     ..+...+++++... .+..+...|++++.-.+.+++
T Consensus       126 l~p~ni~l~~---~~~kl~dfg~~~~~~~~~~~~--~-----~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~  193 (282)
T cd07831         126 IKPENILIKD---DILKLADFGSCRGIYSKPPYT--E-----YISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEIL  193 (282)
T ss_pred             cCHHHEEEcC---CCeEEEecccccccccCCCcC--C-----CCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHH
Confidence            9999999973   899999999998764332110  0     11234455666443 345567789999987766654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.18  E-value=2.8e-10  Score=119.52  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=118.4

Q ss_pred             cccccccccEEEEEEE-C-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +-||.|++|.||+|.. .     +..|++|+........                                   ....+.
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~-----------------------------------~~~~~~   56 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI-----------------------------------QVTLLL   56 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHH-----------------------------------HHHHHH
Confidence            5699999999999998 3     5889999865432111                                   012234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-------cCCCHHHHHHHH--HHHHHHH
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-------~g~d~~~la~~l--v~~~L~q  443 (760)
                      +|+..+.++    .+..-+.+.....+.....++++||+++++|.++.....       ..++...+...+  +-..+..
T Consensus        57 ~e~~~l~~l----~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~  132 (280)
T cd05043          57 QESCLLYGL----SHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSY  132 (280)
T ss_pred             HHHHHHHhC----CCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            455544444    222223322322222356799999999999988754321       123333333322  2234788


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +|..|++|+|++|.||+++.  ++.++++|||++..+.+.......    ....+...+++++.......+...|++++.
T Consensus       133 LH~~~i~H~di~p~nil~~~--~~~~kl~d~g~~~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~~Di~slG  206 (280)
T cd05043         133 LHKRGVIHKDIAARNCVIDE--ELQVKITDNALSRDLFPMDYHCLG----DNENRPVKWMALESLVNKEYSSASDVWSFG  206 (280)
T ss_pred             HHHCCEeecccCHhhEEEcC--CCcEEECCCCCcccccCCceEEeC----CCCCcchhccCHHHHhcCCCCchhhHHHhH
Confidence            99999999999999999985  789999999999876443211000    001123346677776666667788999998


Q ss_pred             HHHHHHH
Q 004334          524 RTAQFFL  530 (760)
Q Consensus       524 ~~~~~~l  530 (760)
                      -.+.+++
T Consensus       207 ~~l~el~  213 (280)
T cd05043         207 VLLWELM  213 (280)
T ss_pred             HHHHHHh
Confidence            7766554

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.17  E-value=1.4e-10  Score=126.06  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=114.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .++||.|++|.||+|..  +|+.||||.........                                  .....+.+|.
T Consensus        15 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~   60 (328)
T cd07856          15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP----------------------------------VLAKRTYREL   60 (328)
T ss_pred             EEeecccCCeEEEEEEECCCCCEEEEEEeccccccc----------------------------------chhHHHHHHH
Confidence            36899999999999997  68999999765421100                                  0111233454


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      ..+.++    .+..-+.+...+.......+++|||+.+ ++.++...  .......   ++..++ ..+..+|..|++|+
T Consensus        61 ~~l~~l----~hpniv~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~~~~ql~-~aL~~LH~~~iiH~  132 (328)
T cd07856          61 KLLKHL----RHENIISLSDIFISPLEDIYFVTELLGT-DLHRLLTS--RPLEKQFIQYFLYQIL-RGLKYVHSAGVVHR  132 (328)
T ss_pred             HHHHhc----CCCCeeeEeeeEecCCCcEEEEeehhcc-CHHHHHhc--CCCCHHHHHHHHHHHH-HHHHHHHhCCcccC
Confidence            544444    2333455555554444567999999854 67665432  2223222   222222 34688999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||++++  ++.++|+|||++...+.....         ..++..+++++.... ...++..|++++...+.+++.
T Consensus       133 dl~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~t  201 (328)
T cd07856         133 DLKPSNILINE--NCDLKICDFGLARIQDPQMTG---------YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLE  201 (328)
T ss_pred             CCCHHHEeECC--CCCEEeCccccccccCCCcCC---------CcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHh
Confidence            99999999985  789999999998866543211         112334555554432 234566799998877766653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.17  E-value=3.5e-10  Score=119.24  Aligned_cols=183  Identities=17%  Similarity=0.149  Sum_probs=110.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||+++.  +|+.||||..+.....                                   +....+.+|..
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-----------------------------------~~~~~~~~e~~   54 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-----------------------------------KEQKRLLMDLD   54 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  5899999976542111                                   01112334444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh----hhcCCCHHHHHHHHHH--HHHHHHHh-CCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--SYLEQILS-HGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l----~~~g~d~~~la~~lv~--~~L~qI~~-~Gf  449 (760)
                      .+.++.   .+..-+.+...+ ......+++|||+++ ++.++...    ....++...+......  ..++.+|. .|+
T Consensus        55 ~l~~~~---~~~~iv~~~~~~-~~~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i  129 (288)
T cd06616          55 VVMRSS---DCPYIVKFYGAL-FREGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKI  129 (288)
T ss_pred             HHHHhc---CCCCEeeeeeEE-ecCCcEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCe
Confidence            444432   111122222222 234567899999875 44443211    1122333333332222  33677876 599


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCChHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRRTA  526 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG---~~~~~~D~~al~~~~  526 (760)
                      +|+|++|.||+++.  ++.++|+|||++..+......       ....+...+++++....+   ..++..|++++.-.+
T Consensus       130 ~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il  200 (288)
T cd06616         130 IHRDVKPSNILLDR--NGNIKLCDFGISGQLVDSIAK-------TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITL  200 (288)
T ss_pred             eccCCCHHHEEEcc--CCcEEEeecchhHHhccCCcc-------ccccCccCccCHHHhccccccCCcchhhhhHHHHHH
Confidence            99999999999985  789999999998765432110       001234456677766544   456778999998776


Q ss_pred             HHHH
Q 004334          527 QFFL  530 (760)
Q Consensus       527 ~~~l  530 (760)
                      .+++
T Consensus       201 ~el~  204 (288)
T cd06616         201 YEVA  204 (288)
T ss_pred             HHHH
Confidence            6554

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.17  E-value=3.4e-10  Score=118.05  Aligned_cols=185  Identities=16%  Similarity=0.161  Sum_probs=112.4

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|.+     +|+.||||+...+......                                  .+.+.+
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~----------------------------------~~~~~~   50 (273)
T cd05074           5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSD----------------------------------IEEFLR   50 (273)
T ss_pred             hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHH----------------------------------HHHHHH
Confidence            5799999999999986     2689999987764322100                                  112334


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccC--------CCeEEEEeecCCCchhhhhhhhhc-----CCCHHHHHHHH--HH
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYT--------TPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA--VE  438 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~s--------t~~vLVME~ieG~~L~d~~~l~~~-----g~d~~~la~~l--v~  438 (760)
                      |.+.+.++    .+ +  .+.+.+....        .-.++++||.+++++.++......     ..+...+....  +-
T Consensus        51 E~~~l~~l----~h-~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  123 (273)
T cd05074          51 EAACMKEF----DH-P--NVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIA  123 (273)
T ss_pred             HHHHHhcC----CC-C--CcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHH
Confidence            55444444    12 2  2333332111        123789999999998876432211     12222222222  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|++|.||+++.  ++.++++|||.+..+.........    ........++.++....+..+...|
T Consensus       124 ~~l~~lH~~~i~H~dikp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~~~~~sD  197 (273)
T cd05074         124 SGMEYLSSKNFIHRDLAARNCMLNE--NMTVCVADFGLSKKIYSGDYYRQG----CASKLPVKWLALESLADNVYTTHSD  197 (273)
T ss_pred             HHHHHHHhCCEeecccchhhEEEcC--CCCEEECcccccccccCCcceecC----CCccCchhhcCHhHHhcCccchhhh
Confidence            3467889999999999999999975  789999999998876432210000    0001123445556666666677789


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++.-.+.+++
T Consensus       198 i~slG~il~el~  209 (273)
T cd05074         198 VWAFGVTMWEIM  209 (273)
T ss_pred             hHHHHHHHHHHh
Confidence            999987766554

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.17  E-value=2.6e-10  Score=123.38  Aligned_cols=188  Identities=15%  Similarity=0.115  Sum_probs=111.2

Q ss_pred             cccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 004334          303 AASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAEL  380 (760)
Q Consensus       303 saSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~  380 (760)
                      .|++++||+|.+  +|+.||||+....-...                                  +..+.+.+|+.-+..
T Consensus        10 ~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~e~~~~~~   55 (328)
T cd08226          10 FCNLTSVYLARHTPTGTLVTVRITDLENCTE----------------------------------EHLKALQNEVVLSHF   55 (328)
T ss_pred             ccCceeEEEEEEcCCCcEEEEEEeccccCCH----------------------------------HHHHHHHHHHHHHHh
Confidence            349999999998  69999999876531110                                  111223344433332


Q ss_pred             HHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCC
Q 004334          381 FASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       381 f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPG  457 (760)
                          +.+..-+.+..++ ......+++|||++|.++.++.... ..+.+...+...+  +-..+..+|..|++|+|++|.
T Consensus        56 ----l~h~niv~~~~~~-~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~  130 (328)
T cd08226          56 ----FRHPNIMTSWTVF-TTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKAS  130 (328)
T ss_pred             ----CCCCCcceEeeeE-ecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHH
Confidence                2232223333333 2345679999999999998865422 2234444332222  223467889999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhH-HHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHHHH
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIR-EGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r-~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||++..  ++.+++.|||.+........ .......-........+++++....+  ..++..|++++.-.+.+++.
T Consensus       131 Nill~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~  205 (328)
T cd08226         131 HILISG--DGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELAT  205 (328)
T ss_pred             HEEEeC--CCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHh
Confidence            999985  78999999986544322110 00000000001122335667766443  24567899999887776654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.17  E-value=8.4e-11  Score=127.64  Aligned_cols=186  Identities=15%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.-...                                   ....+.+|..
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~E~~   55 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQT-----------------------------------FCQRTLREIK   55 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecccccch-----------------------------------hHHHHHHHHH
Confidence            6799999999999998  69999999876521110                                   0111223444


Q ss_pred             HHHHHHHhcCCCCceeeceeeec----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++.    +..-+.+..++..    .....+++|||++| .+.+...  ...+....+...+  +-..+..+|..|++
T Consensus        56 ~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~--~~~l~~~~~~~i~~ql~~aL~~LH~~~iv  128 (336)
T cd07849          56 ILRRFK----HENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLIK--TQHLSNDHIQYFLYQILRGLKYIHSANVL  128 (336)
T ss_pred             HHHhCC----CCCcCchhheeecccccccceEEEEehhccc-CHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            444432    2222223222221    12346899999987 4554432  2223333332222  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~  529 (760)
                      |+|+||.||+++.  ++.++|+|||++..........  .. ..-..++..+++++... ....+...|++++...+.++
T Consensus       129 H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~--~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el  203 (336)
T cd07849         129 HRDLKPSNLLLNT--NCDLKICDFGLARIADPEHDHT--GF-LTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEM  203 (336)
T ss_pred             ccCCCHHHEEECC--CCCEEECcccceeecccccccc--CC-cCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            9999999999985  7899999999987765422110  00 00012233456666543 33456678999998777666


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       204 ~~  205 (336)
T cd07849         204 LS  205 (336)
T ss_pred             Hh
Confidence            54

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.17  E-value=2.4e-10  Score=121.45  Aligned_cols=183  Identities=19%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             cccccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.+|+|++|.||+|...  |+.||||+.+......-                                   ...+..|..
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~-----------------------------------~~~~~~e~~   65 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEE-----------------------------------NKRILMDLD   65 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHH-----------------------------------HHHHHHHHH
Confidence            68999999999999993  99999998764211100                                   000111111


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHa  452 (760)
                      .+.+   .. ++++ +.+...+ ......+++|||+++ .+.++.......++...+....  +-..+..+|. .|++|+
T Consensus        66 ~~~~---~~-~~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~  139 (296)
T cd06618          66 VVLK---SH-DCPYIVKCYGYF-ITDSDVFICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHR  139 (296)
T ss_pred             HHHh---cc-CCCchHhhheee-ecCCeEEEEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecC
Confidence            1111   11 1121 1111111 223467999999976 4555433222223333322222  2233677886 699999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCChHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRRTAQF  528 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~----~~~~~D~~al~~~~~~  528 (760)
                      |++|.||+++.  ++.++|+|||++..+.......       ...+...+++++......    .+...|++++...+.+
T Consensus       140 dl~p~nill~~--~~~~kL~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~e  210 (296)
T cd06618         140 DVKPSNILLDA--SGNVKLCDFGISGRLVDSKAKT-------RSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVE  210 (296)
T ss_pred             CCcHHHEEEcC--CCCEEECccccchhccCCCccc-------CCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHH
Confidence            99999999985  7899999999988775432211       012344566677665332    4567899999877766


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       211 l~~  213 (296)
T cd06618         211 LAT  213 (296)
T ss_pred             HHh
Confidence            653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.16  E-value=7.7e-11  Score=127.04  Aligned_cols=184  Identities=18%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|+||+..+.....                                  .....+..|..
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   51 (330)
T cd07834           6 KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDL----------------------------------IDAKRILREIK   51 (330)
T ss_pred             eeecCCCCeEEEEEEeCCCCcEEEEEeeccccccc----------------------------------hhhhhHHHHHH
Confidence            5799999999999998  48999999876532110                                  00112233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~Gf  449 (760)
                      .+..+.    +..-+.+..++...    .+..+++|||+++ .|.++.... ..++...+   +..++ ..+..+|..|+
T Consensus        52 ~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~l~~~~~~~i~~~l~-~~l~~LH~~gi  124 (330)
T cd07834          52 LLRHLR----HENIIGLLDILRPPSPEDFNDVYIVTELMET-DLHKVIKSP-QPLTDDHIQYFLYQIL-RGLKYLHSANV  124 (330)
T ss_pred             HHHhcC----CcchhhhhhhhcccCcccccceEEEecchhh-hHHHHHhCC-CCCCHHHHHHHHHHHH-HHHHHHHhCCe
Confidence            444331    11112222222111    1356999999986 566654321 12333332   22333 33678999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHH--HHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE--GLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  526 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~--~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~  526 (760)
                      +|+|+||+||+++.  ++.++|+|||++.........  ....     ...+..+++++..... ......|++++.-.+
T Consensus       125 ~H~dlkp~nili~~--~~~~~L~dfg~~~~~~~~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il  197 (330)
T cd07834         125 IHRDLKPSNILVNS--NCDLKICDFGLARGVDPDEDEKGFLTE-----YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIF  197 (330)
T ss_pred             ecCCCCHHHEEEcC--CCCEEEcccCceEeecccccccccccc-----cccccCcCCceeeecccCCCcchhHHHHHHHH
Confidence            99999999999986  799999999999987665321  0000     0123334555554444 456678999988776


Q ss_pred             HHHH
Q 004334          527 QFFL  530 (760)
Q Consensus       527 ~~~l  530 (760)
                      .+++
T Consensus       198 ~~l~  201 (330)
T cd07834         198 AELL  201 (330)
T ss_pred             HHHH
Confidence            6554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.16  E-value=1.4e-10  Score=125.68  Aligned_cols=186  Identities=18%  Similarity=0.130  Sum_probs=111.9

Q ss_pred             cccccccccEEEEEEE--C--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|.||+|+.  .  |..||||+.+......                                  .....+.+|
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~~~~~~E   51 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKK----------------------------------ILAKRALRE   51 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccc----------------------------------hhHHHHHHH
Confidence            5699999999999998  4  7799999865421110                                  011123345


Q ss_pred             HHHHHHHHHhcCCCCceeeceeee------ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004334          375 AANAELFASNFKDMDYVKVPTIFW------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  446 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~------e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~  446 (760)
                      ...+.++.    ++++  +++.+.      ......+++|||+++ +|.+.... ...++...+...+  +-..+..+|.
T Consensus        52 ~~~l~~l~----~h~~--iv~~~~~~~~~~~~~~~~~~~~e~~~~-~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~  123 (332)
T cd07857          52 LKLLRHFR----GHKN--ITCLYDMDIVFPGNFNELYLYEELMEA-DLHQIIRS-GQPLTDAHFQSFIYQILCGLKYIHS  123 (332)
T ss_pred             HHHHHHhc----CCCC--hheeeeeeeeccccCCcEEEEEecccC-CHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            55555442    2222  222221      122346899999975 66665421 2233433333322  2234788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  525 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~  525 (760)
                      .|++|+|+||+||++++  ++.++|+|||++..+..........  ..-..++..+++++....+ ..+...|++++...
T Consensus       124 ~givH~dlkp~Nili~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~  199 (332)
T cd07857         124 ANVLHRDLKPGNLLVNA--DCELKICDFGLARGFSENPGENAGF--MTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCI  199 (332)
T ss_pred             CCcccCCCCHHHeEEcC--CCCEEeCcCCCceeccccccccccc--ccCcccCccccCcHHHhCCCCCCcHHHHHHHHHH
Confidence            99999999999999986  7899999999998776432210000  0011234456667755432 34566799998877


Q ss_pred             HHHHH
Q 004334          526 AQFFL  530 (760)
Q Consensus       526 ~~~~l  530 (760)
                      +.+++
T Consensus       200 l~~l~  204 (332)
T cd07857         200 LAELL  204 (332)
T ss_pred             HHHHH
Confidence            66554

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.16  E-value=2.2e-10  Score=118.05  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceec
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~  479 (760)
                      ...+++|||++|++|.+.... ....+...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++++|||....
T Consensus        58 ~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~df~~~~~  134 (237)
T cd05576          58 DSVFLVLQHAEGGKLWSHISK-FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDD--RGHIQLTYFSRWSE  134 (237)
T ss_pred             CeEEEEEecCCCCCHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcC--CCCEEEecccchhc
Confidence            457999999999999886532 223444433333222  3367889999999999999999986  78999999998766


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          480 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       480 l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +......         ...+..+++++....+..++..|++++.-.+.+++.
T Consensus       135 ~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~  177 (237)
T cd05576         135 VEDSCDG---------EAVENMYCAPEVGGISEETEACDWWSLGAILFELLT  177 (237)
T ss_pred             ccccccc---------CCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHH
Confidence            6542111         011223455655544555667899999877766654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.16  E-value=6.7e-10  Score=116.41  Aligned_cols=149  Identities=16%  Similarity=0.172  Sum_probs=97.7

Q ss_pred             cccc-cccccEEEEEEECCeeEEEEEec-CCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIA-AASLGQVHRARLKGEEVVVKVQR-PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIa-saSiGQVhrA~l~G~~VAVKVqr-Pgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+| .|+.|.||.....|..++||.-+ +++...+..+             .        +.+.   ........+|.+
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~-------------~--------~~~~---~~~~~r~~rE~~   92 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKD-------------R--------YLFT---GLERTRAFAEFR   92 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhh-------------c--------cccc---chhhhHHHHHHH
Confidence            4676 89999999999989999999764 4322111110             0        0000   011233567888


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc---C---CCeEEEEeecCC-CchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY---T---TPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~---s---t~~vLVME~ieG-~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~Gf  449 (760)
                      .+.++.+     .++.+|+++...   .   ...+|+|||++| .+|.++...  ...+.. .... +..++..+|..|+
T Consensus        93 ll~~L~~-----~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~--~~l~~~-~~~~-i~~~l~~lH~~GI  163 (239)
T PRK01723         93 LLAQLYE-----AGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQE--APLSEE-QWQA-IGQLIARFHDAGV  163 (239)
T ss_pred             HHHHHHh-----CCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhc--CCCCHH-HHHH-HHHHHHHHHHCCC
Confidence            8888854     345566665321   1   123699999998 688776432  222322 2233 3456899999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      +|+|+||+|||+++  +++++|+|||.+..-.+
T Consensus       164 ~HrDlkp~NILv~~--~~~v~LIDfg~~~~~~~  194 (239)
T PRK01723        164 YHADLNAHNILLDP--DGKFWLIDFDRGELRTP  194 (239)
T ss_pred             CCCCCCchhEEEcC--CCCEEEEECCCcccCCC
Confidence            99999999999985  67999999998877653

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.15  E-value=1.6e-10  Score=139.57  Aligned_cols=187  Identities=16%  Similarity=0.180  Sum_probs=132.0

Q ss_pred             cccccccccEEEEEEE---CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..||.|.||.||+|..   +|.    .||||..++...++                                   -...+
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~-----------------------------------~~~~F  742 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQ-----------------------------------EVSDF  742 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEEEEeccccCCHH-----------------------------------HHHHH
Confidence            5899999999999999   354    48888776643222                                   11235


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh------hcCCCHHHHHHHHHHHH--HHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD------ELGVDRKRLGRYAVESY--LEQ  443 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~------~~g~d~~~la~~lv~~~--L~q  443 (760)
                      .+||..|..|.    |.+-|..--|-.. ....++++|||+|+.|..+++..      ...+...++....++..  +++
T Consensus       743 l~Ea~~m~~f~----HpNiv~liGv~l~-~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~Y  817 (1025)
T KOG1095|consen  743 LKEALLMSKFD----HPNIVSLIGVCLD-SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNY  817 (1025)
T ss_pred             HHHHHHHhcCC----CcceeeEEEeecC-CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHH
Confidence            78888888772    3333444444444 67789999999999999987654      44556677766665544  788


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      +.+.+|||+|+-.-|.|++.  ...+++.||||++.+-..+-  |..--.|  .--...|+++...-|+.+...|+++|.
T Consensus       818 Le~~~fvHRDLAaRNCLL~~--~r~VKIaDFGlArDiy~~~y--yr~~~~a--~lPvkWm~PEsl~d~iFtskSDvWsFG  891 (1025)
T KOG1095|consen  818 LESKHFVHRDLAARNCLLDE--RRVVKIADFGLARDIYDKDY--YRKHGEA--MLPVKWMPPESLKDGIFTSKSDVWSFG  891 (1025)
T ss_pred             HHhCCCcCcchhhhheeecc--cCcEEEcccchhHhhhhchh--eeccCcc--ccceecCCHHHHhhcccccccchhhhH
Confidence            99999999999999999986  67899999999995543321  1100000  111345666666668889999999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      ..+-+++.
T Consensus       892 VllWEifs  899 (1025)
T KOG1095|consen  892 VLLWEIFS  899 (1025)
T ss_pred             HHHHHHHh
Confidence            87766654

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.15  E-value=5.2e-10  Score=117.17  Aligned_cols=122  Identities=14%  Similarity=0.044  Sum_probs=74.8

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcC---CCHH---HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeec
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELG---VDRK---RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  475 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g---~d~~---~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  475 (760)
                      ...++||||++|++|.++.......   .+..   .++..+ -..+..+|..|++|+|++|.||+++.  ++.++++|||
T Consensus        68 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i-~~al~~lH~~~i~H~dikp~nil~~~--~~~~~l~Dfg  144 (268)
T cd05086          68 IPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEI-AAGVTHMHKHNFLHSDLALRNCFLTS--DLTVKVGDYG  144 (268)
T ss_pred             CccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHH-HHHHHHHHHCCeeccCCccceEEEcC--CccEEecccc
Confidence            4569999999999998865432111   1211   222222 23477899999999999999999985  7899999999


Q ss_pred             ceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCChHHHHHHHHHHH
Q 004334          476 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       476 ~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-------G~~~~~~D~~al~~~~~~~l  530 (760)
                      +.............    ....+...++++++...       ...++..|++++.-.+.+++
T Consensus       145 ~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~  202 (268)
T cd05086         145 IGPSRYKEDYIETE----DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELF  202 (268)
T ss_pred             cccccCcchhhhcc----cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHH
Confidence            87543221110000    00012233455555421       11245689999987766554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.15  E-value=2.2e-10  Score=120.12  Aligned_cols=183  Identities=19%  Similarity=0.241  Sum_probs=109.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.|+||.........                                 ++.  ...+|..
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~--~~~~e~~   49 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSW---------------------------------EEC--MNLREVK   49 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccch---------------------------------hHH--HHHHHHH
Confidence            4699999999999999  58899999755422110                                 000  0112322


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~L~qI~~~GffHa  452 (760)
                      .+.++    .++++ +.+...+ ......++||||+ ++.+.+...... ..++...+.....+  ..+..+|..|++|+
T Consensus        50 ~l~~~----~~h~~i~~~~~~~-~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~  123 (283)
T cd07830          50 SLRKL----NEHPNIVKLKEVF-RENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHR  123 (283)
T ss_pred             HHHhc----cCCCCchhHHHHh-hcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccC
Confidence            23222    11121 1111112 2245679999999 556666443222 23344443333222  33678899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~-~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|+||++++  ++.++|+|||.+..+.......       -..++..+++++.. .....+...|++++...+.+++.
T Consensus       124 dl~~~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~  194 (283)
T cd07830         124 DLKPENLLVSG--PEVVKIADFGLAREIRSRPPYT-------DYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYT  194 (283)
T ss_pred             CCChhhEEEcC--CCCEEEeecccceeccCCCCcC-------CCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHh
Confidence            99999999986  8899999999998775432110       01123334455543 23345667899999877766554

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.15  E-value=4.1e-10  Score=120.34  Aligned_cols=190  Identities=15%  Similarity=0.101  Sum_probs=114.5

Q ss_pred             cccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAEL  380 (760)
Q Consensus       301 IasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~  380 (760)
                      ++.++++.|++++.+|+.||||+.+......                                  +-...+.+|...+.+
T Consensus        10 ~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~~~~Ei~~l~~   55 (314)
T cd08216          10 FEDLMIVHLAKHKPTNTLVAVKKINLDSCSK----------------------------------EDLKLLQQEIITSRQ   55 (314)
T ss_pred             hcCCceEEEEEecCCCCEEEEEEEeccccch----------------------------------hHHHHHHHHHHHHHh
Confidence            4566677777777789999999876531110                                  011123445555554


Q ss_pred             HHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCC
Q 004334          381 FASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       381 f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPG  457 (760)
                      +.    +..-+.+..++ ......+++|||++|+++.++.... ..+.+...+...+  +-..+..+|.+|++|+|++|+
T Consensus        56 l~----h~~i~~~~~~~-~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~  130 (314)
T cd08216          56 LQ----HPNILPYVTSF-IVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKAS  130 (314)
T ss_pred             cC----Ccchhhhhhee-ecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcc
Confidence            42    22222222222 3345679999999999998876432 2234443333322  223467899999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHHHH
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r~~-l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+++.  ++.+++.|||.+..+....... ..........++..++++++....  ..++..|++++.-.+.+++.
T Consensus       131 Nili~~--~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~  205 (314)
T cd08216         131 HILLSG--DGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELAN  205 (314)
T ss_pred             eEEEec--CCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHh
Confidence            999986  7899999999887664322210 000001112234456677766542  24567899999877666543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.14  E-value=1.4e-10  Score=125.75  Aligned_cols=188  Identities=18%  Similarity=0.162  Sum_probs=112.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||+|+........                                  +....+.+|..
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~----------------------------------~~~~~~~~e~~   56 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVP----------------------------------TLAKRTLRELK   56 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccc----------------------------------cchHHHHHHHH
Confidence            5799999999999998  59999999865421110                                  00111233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeec---cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e---~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++.    +..-+.+..++..   .....+++|||++| .+.++.... ..++...+...+  +-..+..+|..|++|
T Consensus        57 ~l~~l~----h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH  130 (334)
T cd07855          57 ILRHFK----HDNIIAIRDILRPPGADFKDVYVVMDLMES-DLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIHSANVIH  130 (334)
T ss_pred             HHHhcC----CCCccCHHHhccccCCCCceEEEEEehhhh-hHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            444442    2222233333321   22356999999976 666654222 123333332222  234477899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||++++  ++.++|+|||++..+........ .. ..-..+...+++++... .+..+...|+++++..+.+++
T Consensus       131 ~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~~-~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~  206 (334)
T cd07855         131 RDLKPSNLLVNE--DCELRIGDFGMARGLSSSPTEHK-YF-MTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEML  206 (334)
T ss_pred             CCCCHHHEEEcC--CCcEEecccccceeecccCcCCC-cc-cccccccccccChHHhcCCcccccccchHHHHHHHHHHH
Confidence            999999999986  89999999999877644321100 00 00011233445566543 244567789999987766654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.14  E-value=7.8e-10  Score=116.22  Aligned_cols=180  Identities=22%  Similarity=0.276  Sum_probs=125.6

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ++||-|--+.||.|.. +|.+||||.-|-|- ..+..    .+.--..+.      ......|..+-..   .-.+|-..
T Consensus        97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR~Gr-tsFrk----vk~~R~y~~------~~~h~sWl~~sRl---~A~rEf~~  162 (304)
T COG0478          97 TKIGVGKESDVYVAIDPKGRKVAVKFHRLGR-TSFRK----VKRNRDYLA------DKEHGSWLYVSRL---AAEREFEA  162 (304)
T ss_pred             cccccCccceEEEEECCCCCEEEEEEeecCc-hhhhh----hcchhhhhc------cccCcchhhhHHH---HHHHHHHH
Confidence            6899999999999999 79999999988873 22221    111111111      0112234333222   23467777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPG  457 (760)
                      |.++.     ..++.||+++.  -+++++||||++|.+|..+.-   ...++..+...+++.+-. +...|++|||+.+-
T Consensus       163 L~~L~-----~~G~~VP~P~~--~nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~-~~~~GiVHGDlSef  231 (304)
T COG0478         163 LQRLY-----PEGVKVPKPIA--WNRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRK-AYRRGIVHGDLSEF  231 (304)
T ss_pred             HHHhh-----hcCCCCCCccc--cccceeeeehcccceeecccC---cccCHHHHHHHHHHHHHH-HHHcCccccCCchh
Confidence            77773     23578999883  477899999999999887531   234566777777766543 44999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      ||+|++  +|.+++|||-.+...+...-..+       +.+|.+.++..+.+-..
T Consensus       232 NIlV~~--dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~  277 (304)
T COG0478         232 NILVTE--DGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYG  277 (304)
T ss_pred             eEEEec--CCCEEEEeCcccccCCCCCHHHH-------HHhHHHHHHHHHHHhcc
Confidence            999996  89999999999999887765433       46788888777776543

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.13  E-value=7.9e-11  Score=127.79  Aligned_cols=185  Identities=20%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             cccccccccEEEEEEECC--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|-||||.|-.|..+|  +.+||||.+.++--+ ..|++.     .+.++......+...=++++.            
T Consensus       355 ~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQ-dDDvec-----tm~EKrvLAL~~kppFL~qlH------------  416 (683)
T KOG0696|consen  355 MVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQ-DDDVEC-----TMVEKRVLALPGKPPFLVQLH------------  416 (683)
T ss_pred             EEeccCccceeeeecccCcchhhhhhhhccceeee-cCcccc-----eehhhhheecCCCCchHHHHH------------
Confidence            579999999999999855  679999988865321 112221     011110000000011112222            


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhh-hhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d-~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                            ..|..             -.+.+.||||+.|+.|.- +++...........-..-+...|--+|..|++.+|+|
T Consensus       417 ------ScFQT-------------mDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLK  477 (683)
T KOG0696|consen  417 ------SCFQT-------------MDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLK  477 (683)
T ss_pred             ------HHhhh-------------hhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeecc
Confidence                  22221             134689999999998863 3333333222222222233444566899999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceec--cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGS--ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~--l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      -.|||++.  +|.|++.||||++.  .+..+..        ..-+++++++++++...-....+|-+++...+++++
T Consensus       478 LDNvmLd~--eGHiKi~DFGmcKEni~~~~TTk--------TFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEml  544 (683)
T KOG0696|consen  478 LDNVMLDS--EGHIKIADFGMCKENIFDGVTTK--------TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML  544 (683)
T ss_pred             ccceEecc--CCceEeeecccccccccCCccee--------eecCCCcccccceEEecccccchhHHHHHHHHHHHH
Confidence            99999986  89999999999975  2222222        235799999999998877778889999988776665

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.13  E-value=1.6e-10  Score=129.94  Aligned_cols=189  Identities=20%  Similarity=0.187  Sum_probs=128.5

Q ss_pred             cccccccccEEEEEEECC-eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G-~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|-||.||.+...| ..||||..||+.-+.-                                   ...+..|++.
T Consensus       544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~-----------------------------------r~~F~kEIki  588 (807)
T KOG1094|consen  544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNA-----------------------------------RNDFLKEIKI  588 (807)
T ss_pred             hhhcCcccceeEEEEecCceEEEEeecCcccchhH-----------------------------------HHHHHHHHHH
Confidence            579999999999999965 9999999999643321                                   2345667777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC-CCHHHHHHH--HHHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRY--AVESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g-~d~~~la~~--lv~~~L~qI~~~GffHaDp  454 (760)
                      +.++    +|.+-|.+-.|.- -....+++|||++.+.|+++....... .+.......  .+.+.++++-..+|+|+|+
T Consensus       589 LsqL----khPNIveLvGVC~-~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~  663 (807)
T KOG1094|consen  589 LSRL----KHPNIVELLGVCV-QDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDL  663 (807)
T ss_pred             Hhcc----CCCCeeEEEeeee-cCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccc
Confidence            7766    3333333333321 124568999999999999976433221 122222222  2334577788899999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  533 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~  533 (760)
                      -|.|+|++.  ++.++++||||++.+-...-...-    +-..--...|+.+.+-+|..+...|++++...+.+++.-.
T Consensus       664 a~rNcLv~~--e~~iKiadfgmsR~lysg~yy~vq----gr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C  736 (807)
T KOG1094|consen  664 ATRNCLVDG--EFTIKIADFGMSRNLYSGDYYRVQ----GRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLC  736 (807)
T ss_pred             cccceeecC--cccEEecCcccccccccCCceeee----cceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHH
Confidence            999999985  889999999999866332211100    0000123567788888999999999999999887776544

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.12  E-value=3.9e-10  Score=129.97  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             CCeEEEEeecCCCchhhhhhhhhcC-----------------------CCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004334          402 TPQILTMEYVPGIKINRIQSLDELG-----------------------VDRKRLGRYA--VESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l~~~g-----------------------~d~~~la~~l--v~~~L~qI~~~GffHaDpHP  456 (760)
                      ...+|||||++|++|.++.......                       .+...+....  +-..+..+|..|++|+|+||
T Consensus       258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp  337 (507)
T PLN03224        258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKP  337 (507)
T ss_pred             CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCch
Confidence            4579999999999998875421100                       0111111111  22346779999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccC
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      .||+++.  ++.++++|||++..+.
T Consensus       338 ~NILl~~--~~~~kL~DFGla~~~~  360 (507)
T PLN03224        338 ENLLVTV--DGQVKIIDFGAAVDMC  360 (507)
T ss_pred             HhEEECC--CCcEEEEeCcCccccc
Confidence            9999985  7899999999987654

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.12  E-value=3.6e-10  Score=122.60  Aligned_cols=189  Identities=16%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|..  +|+.||||.........                             .    . ...+..|..
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~-----------------------------~----~-~~~~~~E~~   58 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNA-----------------------------T----D-AQRTFREIM   58 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcc-----------------------------h----h-hhhhhHHHH
Confidence            5799999999999998  58999999764321100                             0    0 011233544


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHa  452 (760)
                      .+.++.   .+..-+.+..++... ....++||||++| +|.+.....  ..+...   ++..++ ..+..+|..|++|+
T Consensus        59 ~l~~l~---~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~--~~~~~~~~~i~~qi~-~~L~~LH~~~i~H~  131 (337)
T cd07852          59 FLQELG---DHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRAN--ILEDVHKRYIMYQLL-KALKYIHSGNVIHR  131 (337)
T ss_pred             HHHHhc---CCCCccceeeeeccCCCceEEEEeccccc-CHHHHHhcC--CCCHHHHHHHHHHHH-HHHHHHHHCCeecC
Confidence            444441   122223333333222 2246999999986 676654322  223222   223233 34678999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~-~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++|.||+++.  ++.++|+|||++..+.......-.... .-..+...+++++.. .........|++++...+.+++.
T Consensus       132 dl~p~nill~~--~~~~kl~d~g~~~~~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~t  208 (337)
T cd07852         132 DLKPSNILLNS--DCRVKLADFGLARSLSELEENPENPVL-TDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLL  208 (337)
T ss_pred             CCCHHHEEEcC--CCcEEEeeccchhccccccccccCcch-hcccccccccCceeeeccccccccchHHHHHHHHHHHHh
Confidence            99999999986  889999999999877543221000000 001133445556543 23445667899999887776654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.11  E-value=3.6e-10  Score=120.39  Aligned_cols=192  Identities=15%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             cccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ..||+|++|.||+|..    +|+.||||+..+.....                                 +.....+.+|
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~---------------------------------~~~~~~~~~e   52 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY---------------------------------TGISQSACRE   52 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc---------------------------------cCccHHHHHH
Confidence            4699999999999998    37899999987742100                                 0011122344


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhh-hhh---cCCCHHHHHHH--HHHHHHHHHHhC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQS-LDE---LGVDRKRLGRY--AVESYLEQILSH  447 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~-l~~---~g~d~~~la~~--lv~~~L~qI~~~  447 (760)
                      +..+.++    .+..-+.+...+..- ....++||||+++. +.++.. ...   ..+....+...  .+-..+..+|..
T Consensus        53 ~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  127 (316)
T cd07842          53 IALLREL----KHENVVSLVEVFLEHADKSVYLLFDYAEHD-LWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN  127 (316)
T ss_pred             HHHHHhc----CCCCccceEEEEeCCCCceEEEEEeCCCcC-HHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            4444444    222223344433222 14579999999874 444321 111   12233322222  123347788999


Q ss_pred             CccccCCCCCcEEEec--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHH
Q 004334          448 GFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  524 (760)
Q Consensus       448 GffHaDpHPGNILV~~--~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~  524 (760)
                      |++|+|++|.||+++.  ..++.++++|||++..+.........   ..-..+...+++++....+ ......|+++++-
T Consensus       128 ~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~  204 (316)
T cd07842         128 WVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLAD---LDPVVVTIWYRAPELLLGARHYTKAIDIWAIGC  204 (316)
T ss_pred             CEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccc---cCCccccccccCHHHHhCCCCCCcHHHHHHHHH
Confidence            9999999999999973  12578999999998876543221000   0000122335666655332 2456679999987


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       205 ~l~~l~~  211 (316)
T cd07842         205 IFAELLT  211 (316)
T ss_pred             HHHHHHh
Confidence            7766553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.11  E-value=1e-10  Score=135.08  Aligned_cols=214  Identities=16%  Similarity=0.221  Sum_probs=145.9

Q ss_pred             hhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEEC--C---eeEEEEEecCCchhhHHHHHHHH
Q 004334          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--G---EEVVVKVQRPGLKDLFDIDLKNL  339 (760)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~--G---~~VAVKVqrPgi~~~i~~DL~iL  339 (760)
                      .+.-+.|+.+|+-.+.+. ||-+.++--+-.+ ++.||+|.||.||+|+|+  |   ..||||..+-|-.+..+.|    
T Consensus       603 ~k~YiDP~TYEDPnqAvr-eFakEId~s~i~I-e~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytekqrrd----  676 (996)
T KOG0196|consen  603 TKTYIDPHTYEDPNQAVR-EFAKEIDPSCVKI-EKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRD----  676 (996)
T ss_pred             ceeecCCccccCccHHHH-HhhhhcChhheEE-EEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhh----
Confidence            455567888877666554 2333333222222 358999999999999993  4   5799999988766553333    


Q ss_pred             HHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhh
Q 004334          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI  419 (760)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~  419 (760)
                                                     +..||..|-+|    .|.+-++.-.|+ --+..-++++|||+.++|+.+
T Consensus       677 -------------------------------FL~EAsIMGQF----dHPNIIrLEGVV-Tks~PvMIiTEyMENGsLDsF  720 (996)
T KOG0196|consen  677 -------------------------------FLSEASIMGQF----DHPNIIRLEGVV-TKSKPVMIITEYMENGSLDSF  720 (996)
T ss_pred             -------------------------------hhhhhhhcccC----CCCcEEEEEEEE-ecCceeEEEhhhhhCCcHHHH
Confidence                                           34566666655    333334444444 345667999999999999998


Q ss_pred             hhhhhcCCCHHHHHH--HHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhh
Q 004334          420 QSLDELGVDRKRLGR--YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE  497 (760)
Q Consensus       420 ~~l~~~g~d~~~la~--~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~  497 (760)
                      +......+..-++..  +++.+-++++-.+|++||||-.-||||+.  +-..++.|||+.+.+.++.-..+... -+  .
T Consensus       721 LR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNs--nLvCKVsDFGLSRvledd~~~~ytt~-GG--K  795 (996)
T KOG0196|consen  721 LRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAYTTL-GG--K  795 (996)
T ss_pred             HhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeecc--ceEEEeccccceeecccCCCcccccc-CC--c
Confidence            876655555444543  45778899999999999999999999985  67889999999998866542222111 00  0


Q ss_pred             cCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          498 KDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       498 ~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      =-...-+++.+.....+...|++++.-.
T Consensus       796 IPiRWTAPEAIa~RKFTsASDVWSyGIV  823 (996)
T KOG0196|consen  796 IPIRWTAPEAIAYRKFTSASDVWSYGIV  823 (996)
T ss_pred             cceeecChhHhhhcccCchhhccccceE
Confidence            0124456777777777888899987653

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.11  E-value=2.1e-11  Score=146.93  Aligned_cols=180  Identities=17%  Similarity=0.144  Sum_probs=115.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEec--CCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqr--Pgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .-||.|-||+||-|..  +|+-.|||-.+  |+..                  +.          +.        .+.+|
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~------------------k~----------~~--------~i~eE 1284 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDH------------------KT----------FK--------LIAEE 1284 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCcccc------------------cc----------Cc--------chHHH
Confidence            4799999999999998  69999998432  1110                  00          00        12234


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffH  451 (760)
                      ...++.+     +++++.-|..+.-+..+.+|-||||+|++|.++.....  .....   +-...+-..+..+|.+|++|
T Consensus      1285 m~vlE~l-----nHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~gIVH 1357 (1509)
T KOG4645|consen 1285 MKVLEGL-----NHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHGIVH 1357 (1509)
T ss_pred             HHHHHhc-----cCccccccCceeecHHHHHHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcCcee
Confidence            4444544     33444444444445566789999999999999765432  11111   11112223366789999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCChHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRT  525 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~---~~~~~D~~al~~~  525 (760)
                      +||||.||+++.  +|-|++.|||.+..+...... +-.-+. -..|++.+|+++.+.-.-   .....|+++++=.
T Consensus      1358 RDIK~aNI~Ld~--~g~iK~~DFGsa~ki~~~~~~-~~~el~-~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCV 1430 (1509)
T KOG4645|consen 1358 RDIKPANILLDF--NGLIKYGDFGSAVKIKNNAQT-MPGELQ-SMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCV 1430 (1509)
T ss_pred             cCCCccceeeec--CCcEEeecccceeEecCchhc-CCHHHH-hhcCCchhcCchhhcccccCCCCcchhhhcccce
Confidence            999999999986  789999999999998776321 111111 235889999999875322   1234577776643

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.11  E-value=4.6e-10  Score=122.05  Aligned_cols=185  Identities=16%  Similarity=0.172  Sum_probs=111.0

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+++|.|++|.||+|+.  +|+.||||..++.......                                  ...+.+|.
T Consensus        10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~----------------------------------~~~~~~E~   55 (337)
T cd07858          10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRID----------------------------------AKRTLREI   55 (337)
T ss_pred             EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccch----------------------------------hHHHHHHH
Confidence            36899999999999998  5899999987653211100                                  00112343


Q ss_pred             HHHHHHHHhcCCCCceeeceeeec----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      ..+..+.    +...+.+..++..    .....+++|||++| .|.++.... ..+....+...+  +-..+..+|..|+
T Consensus        56 ~~l~~l~----h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i  129 (337)
T cd07858          56 KLLRHLD----HENVIAIKDIMPPPHREAFNDVYIVYELMDT-DLHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIHSANV  129 (337)
T ss_pred             HHHHhcC----CCCccchHHheecccccccCcEEEEEeCCCC-CHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            3344331    1111222221111    11346999999975 566544221 223333333222  2233678999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~  528 (760)
                      +|+|++|.||+++.  ++.++|+|||++........  ...    ...+...+++++.... +..+...|++++.-.+.+
T Consensus       130 ~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~--~~~----~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~  201 (337)
T cd07858         130 LHRDLKPSNLLLNA--NCDLKICDFGLARTTSEKGD--FMT----EYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAE  201 (337)
T ss_pred             ecCCCCHHHEEEcC--CCCEEECcCccccccCCCcc--ccc----ccccccCccChHHHhcCCCCCCcccHHHHHHHHHH
Confidence            99999999999985  78999999999887654321  000    0112334556665543 346677899999877666


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       202 l~  203 (337)
T cd07858         202 LL  203 (337)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.11  E-value=2.1e-10  Score=126.78  Aligned_cols=177  Identities=18%  Similarity=0.145  Sum_probs=113.4

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +-+|.|.||.||+|.++++.||||+..+.-.+.+..+-+|+..                             ...+..|+
T Consensus       216 eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~l-----------------------------p~m~h~nI  266 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSL-----------------------------PGMKHENI  266 (534)
T ss_pred             HHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhc-----------------------------cCccchhH
Confidence            3589999999999999999999998766433333332222211                             01123344


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHh---------
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILS---------  446 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~---~~la~~lv~~~L~qI~~---------  446 (760)
                      -+|-..-+..         .....+.+||+||-+-++|.++....  -++-   -+++..+++ -+..+|+         
T Consensus       267 l~Fi~~ekr~---------t~~~~eywLVt~fh~kGsL~dyL~~n--tisw~~~cria~Smar-GLa~LHee~p~~d~~K  334 (534)
T KOG3653|consen  267 LQFIGAEKRG---------TADRMEYWLVTEFHPKGSLCDYLKAN--TISWNSLCRIAESMAR-GLAHLHEELPRGDHHK  334 (534)
T ss_pred             HHhhchhccC---------CccccceeEEeeeccCCcHHHHHHhc--cccHHHHHHHHHHHHH-HHHHhcccCCcCCCCC
Confidence            4441111100         01122568999999999999986433  2333   334444443 2566764         


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      .+|.|||+|..||||..  |+..+|.|||++-++++..-..=.    +.-.++..+|++++++-.+--.  |..+|++
T Consensus       335 p~IaHRDlkSkNVLvK~--DlTccIaDFGLAl~~~p~~~~~d~----~~qVGT~RYMAPEvLEgainl~--d~~Afkr  404 (534)
T KOG3653|consen  335 PPIAHRDLKSKNVLVKN--DLTCCIADFGLALRLEPGKPQGDT----HGQVGTRRYMAPEVLEGAINLQ--DRDAFKR  404 (534)
T ss_pred             CccccccccccceEEcc--CCcEEeeccceeEEecCCCCCcch----hhhhhhhhhcCHHHHhhhcccc--cHHHHHH
Confidence            36999999999999985  999999999999999865433211    1135788999999998654332  2444443

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.09  E-value=4.6e-10  Score=122.44  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=74.2

Q ss_pred             CeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          403 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       403 ~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      ..+++|||+++ .+.+....  ..+....+...  .+-..+..+|..|++|+|+||+||+++. .++.++++|||++..+
T Consensus        90 ~~~lv~e~~~~-~L~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~-~~~~~kl~dfg~~~~~  165 (342)
T cd07854          90 SVYIVQEYMET-DLANVLEQ--GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINT-EDLVLKIGDFGLARIV  165 (342)
T ss_pred             eEEEEeecccc-cHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcC-CCceEEECCcccceec
Confidence            35899999986 66654422  12232222221  2223467889999999999999999974 3567999999999876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          481 SPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       481 ~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      .......-   ......+...+++++...- .......|+++++-.+.+++.
T Consensus       166 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~  214 (342)
T cd07854         166 DPHYSHKG---YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT  214 (342)
T ss_pred             CCcccccc---ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHh
Confidence            54322100   0000012334555665432 234556899999877766543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.09  E-value=4.5e-10  Score=116.43  Aligned_cols=120  Identities=10%  Similarity=0.051  Sum_probs=79.4

Q ss_pred             CCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecc
Q 004334          402 TPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  476 (760)
Q Consensus       402 t~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~  476 (760)
                      +..+++|||++|.+|.++...   ....++...+...+  +...+..+|..|++|+|++|.||+++   ++.++++|||.
T Consensus        75 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~---~~~~~l~d~g~  151 (260)
T cd08222          75 DAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLK---NNLLKIGDFGV  151 (260)
T ss_pred             CceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEee---cCCEeecccCc
Confidence            457899999999999876532   11223333322222  22346789999999999999999997   46799999998


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          477 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       477 v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +..+......      .....+...+++++...........|++++...+.+++
T Consensus       152 ~~~~~~~~~~------~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~  199 (260)
T cd08222         152 SRLLMGSCDL------ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMC  199 (260)
T ss_pred             eeecCCCccc------ccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            8766433210      11123445566677665555566789999887665554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.08  E-value=1.2e-09  Score=119.14  Aligned_cols=186  Identities=19%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             ccccccccccEEEEEEEC---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ...||.|+||+||.+...   .+.+|+|+........                            .        ..+..|
T Consensus        23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----------------------------~--------~~l~~E   66 (322)
T KOG1164|consen   23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----------------------------P--------SVLKIE   66 (322)
T ss_pred             eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----------------------------C--------ccchhH
Confidence            468999999999999983   3589999866521110                            0        001122


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeecc-CC--CeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHH--HHHHHHhCC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEY-TT--PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVES--YLEQILSHG  448 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~-st--~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~--~L~qI~~~G  448 (760)
                      ...+..+..   ......+|.+++.. .+  -+++||+.+ |.+|.++..... ..+.........++.  .++.+|+.|
T Consensus        67 ~~vl~~l~~---~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G  142 (322)
T KOG1164|consen   67 IQVLKKLEK---KNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG  142 (322)
T ss_pred             HHHHHHHhh---hcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC
Confidence            222222222   12234678877766 23  369999988 889998764332 345555555544443  388999999


Q ss_pred             ccccCCCCCcEEEeccC---CCcEEEEeeccee--ccChhhHHHHHH--HHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          449 FFHADPHPGNIAVDDVN---GGRLIFYDFGMMG--SISPNIREGLLE--AFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~---~g~l~LiDFG~v~--~l~~~~r~~l~~--l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      |+|||+||+|+++....   ...+.++|||+++  ++..........  -..+...++..++....-...-..+..|.++
T Consensus       143 ~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles  222 (322)
T KOG1164|consen  143 FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLES  222 (322)
T ss_pred             cccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhh
Confidence            99999999999997521   1469999999999  432221110000  0002334666666666555555556667766


Q ss_pred             HH
Q 004334          522 VR  523 (760)
Q Consensus       522 l~  523 (760)
                      +-
T Consensus       223 ~~  224 (322)
T KOG1164|consen  223 LF  224 (322)
T ss_pred             HH
Confidence            43

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.07  E-value=8.7e-10  Score=129.13  Aligned_cols=162  Identities=15%  Similarity=0.214  Sum_probs=109.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||-|..|+||+++.  +|+-+||||+.|+....-+.++                                     | .
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~-------------------------------------e-y   66 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIEL-------------------------------------E-Y   66 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHH-------------------------------------H-H
Confidence            3688899999998887  6999999999996543311111                                     1 1


Q ss_pred             HHHHHHHhcCCCCceeeceeee-----ccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHHHHH--HHHHHhCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVESY--LEQILSHG  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~-----e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv~~~--L~qI~~~G  448 (760)
                      |+-++   ..+++++..-.-+.     .-..+.+||||||.|++++|+.... ....+...+|..+.+.+  +..+|...
T Consensus        67 nil~~---~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk  143 (953)
T KOG0587|consen   67 NMLKK---YSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK  143 (953)
T ss_pred             HHHHh---ccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc
Confidence            22222   22333322211111     2346789999999999999976432 22344556666665555  55567778


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~  509 (760)
                      ++|+|++-.|||++.  +|.++|+|||...+++....+.      ...-+.+-.|+++.+.
T Consensus       144 viHRDikG~NiLLT~--e~~VKLvDFGvSaQldsT~grR------nT~iGtP~WMAPEVia  196 (953)
T KOG0587|consen  144 VIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDSTVGRR------NTFIGTPYWMAPEVIA  196 (953)
T ss_pred             eeeecccCceEEEec--cCcEEEeeeeeeeeeecccccc------cCcCCCcccccceeee
Confidence            999999999999996  8999999999999998764432      2234666677776654

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.07  E-value=4e-10  Score=127.99  Aligned_cols=182  Identities=18%  Similarity=0.192  Sum_probs=124.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||+|.||.|..|++  +|.+||||+....--                             +...     ...+.+|.+
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~l-----------------------------n~~~-----~~k~~rev~  107 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQL-----------------------------NPSK-----RQKLGREVD  107 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEEEEEehhccc-----------------------------ChHH-----HHHHHHHHH
Confidence            5799999999999999  799999997544110                             0000     011334545


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH---HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l---v~~~L~qI~~~GffHa  452 (760)
                      .|..+     ++|+ |.+-.|+ +.....+|||||+.|+.+.++..  ..+-+....++..   +-..++.+|.++|+|+
T Consensus       108 imk~l-----~HPnIvkl~~v~-~t~~~lylV~eya~~ge~~~yl~--~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHr  179 (596)
T KOG0586|consen  108 IMKSL-----NHPNIVKLFSVI-ETEATLYLVMEYASGGELFDYLV--KHGRMKEKEARAKFRQIVSAVEYCHSKNIVHR  179 (596)
T ss_pred             HHHhc-----CCcceeeeeeee-eecceeEEEEEeccCchhHHHHH--hcccchhhhhhhhhHHHHHHHHHHhhcceecc
Confidence            55444     3333 3444444 33455799999999999988653  2333333333332   2344788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |||..||+++.  +-.+++.|||+...++...   +    ..-.-+.+.++++++.. .....|..|.+.++..++-++.
T Consensus       180 dLk~eNilL~~--~mnikIaDfgfS~~~~~~~---~----lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~  250 (596)
T KOG0586|consen  180 DLKAENILLDE--NMNIKIADFGFSTFFDYGL---M----LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVE  250 (596)
T ss_pred             ccchhhccccc--ccceeeeccccceeecccc---c----ccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeee
Confidence            99999999985  5679999999999987542   2    22234677888887764 4567888999999887766544

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.06  E-value=9.9e-10  Score=122.03  Aligned_cols=184  Identities=18%  Similarity=0.205  Sum_probs=122.2

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH-HHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC-ASVLYQE  374 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~-~~~l~~E  374 (760)
                      ++.||.|-|+.|-.|++  +|+.|||||...--                                   +|+. ...+.+|
T Consensus        23 ekTlG~GHFAVVKLArHVFTGekVAVKviDKTK-----------------------------------lD~~st~hlfqE   67 (864)
T KOG4717|consen   23 EKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTK-----------------------------------LDTLSTGHLFQE   67 (864)
T ss_pred             hhhhcCCceehhhhhhhhcccceeEEEEecccc-----------------------------------cchhhhhHHHHH
Confidence            46899999999999998  89999999964310                                   0111 2245667


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHH---HHHHHhCCccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY---LEQILSHGFFH  451 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~---L~qI~~~GffH  451 (760)
                      .+-|+..    .+.+-|...+|+ +-.|+.||+.|.=+|+.|.|++--...|+.. .+++.-...+   +.+.|...++|
T Consensus        68 VRCMKLV----QHpNiVRLYEVi-DTQTKlyLiLELGD~GDl~DyImKHe~Gl~E-~La~kYF~QI~~AI~YCHqLHVVH  141 (864)
T KOG4717|consen   68 VRCMKLV----QHPNIVRLYEVI-DTQTKLYLILELGDGGDLFDYIMKHEEGLNE-DLAKKYFAQIVHAISYCHQLHVVH  141 (864)
T ss_pred             HHHHHHh----cCcCeeeeeehh-cccceEEEEEEecCCchHHHHHHhhhccccH-HHHHHHHHHHHHHHHHHhhhhhhc
Confidence            6666654    344445555555 3457889999999999999987544445432 2222221111   23345677999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH-HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA-MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~-l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.|+.+-+ .-|-++|.|||+.-.+.|..+-   ..+.    +.-.+-+++ ++.-.+-.|.+|+|.+..+++.++
T Consensus       142 RDLKPENVVFFE-KlGlVKLTDFGFSNkf~PG~kL---~TsC----GSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLV  213 (864)
T KOG4717|consen  142 RDLKPENVVFFE-KLGLVKLTDFGFSNKFQPGKKL---TTSC----GSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLV  213 (864)
T ss_pred             ccCCcceeEEee-ecCceEeeeccccccCCCcchh---hccc----chhhccCchhhhcCccCCcchhhhHHHHHHHHHH
Confidence            999999997764 4788999999999988876552   1222    233333343 333345567889999998776554

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.04  E-value=2.8e-10  Score=130.04  Aligned_cols=187  Identities=17%  Similarity=0.166  Sum_probs=127.3

Q ss_pred             cccccccccEEEEEEEC---C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +-||.||||.||+|.++   |  -.||||+.+++....                               +    ...+.+
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-------------------------------~----mddflr  160 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-------------------------------I----MDDFLR  160 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch-------------------------------h----HHHHHH
Confidence            35999999999999993   5  479999999864322                               1    123467


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHHHH--HHHHHHHhCCcc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQILSHGFF  450 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~L~qI~~~Gff  450 (760)
                      |+..|-++.    |...|+...|+  +.....||||.+++++|-|.+.. ....+.-..+.....+  ..+.++-..+++
T Consensus       161 Eas~M~~L~----H~hliRLyGvV--l~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlv  234 (1039)
T KOG0199|consen  161 EASHMLKLQ----HPHLIRLYGVV--LDQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLV  234 (1039)
T ss_pred             HHHHHHhcc----CcceeEEeeee--ccchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            777777663    33334444444  34667899999999999886543 1222222333333222  235556679999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+-.-|+++-.  ...++++|||+++.+...+-..   .+..-..=-+..++++.++.+..+...|++.+...+-+++
T Consensus       235 HRDLAARNlllas--prtVKI~DFGLmRaLg~ned~Y---vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMF  309 (1039)
T KOG0199|consen  235 HRDLAARNLLLAS--PRTVKICDFGLMRALGENEDMY---VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMF  309 (1039)
T ss_pred             hhhhhhhhheecc--cceeeeecccceeccCCCCcce---EecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhh
Confidence            9999999999975  5689999999999998754322   1111011235678899999988888999999998776655


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       310 t  310 (1039)
T KOG0199|consen  310 T  310 (1039)
T ss_pred             c
Confidence            3

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.04  E-value=1.3e-09  Score=118.07  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH--HHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD--ECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~--E~~~~l~~E  374 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..........                        ....+.  .+...+.+|
T Consensus        15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~E   70 (335)
T PTZ00024         15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTK------------------------DRQLVGMCGIHFTTLRE   70 (335)
T ss_pred             hcccCCCceeEEEEEECCCCCeEEEEEeecccccccccc------------------------chhhhcccccchhHHHH
Confidence            4699999999999998  589999998764311110000                        000000  011123455


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ...+.++.    +...+.+...+ ......+++|||++| .+.++... ............+  +-..+..+|..|++|+
T Consensus        71 ~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~  143 (335)
T PTZ00024         71 LKIMNEIK----HENIMGLVDVY-VEGDFINLVMDIMAS-DLKKVVDR-KIRLTESQVKCILLQILNGLNVLHKWYFMHR  143 (335)
T ss_pred             HHHHHhCC----CcceeeeeEEE-ecCCcEEEEEecccc-CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            55555542    22222333322 234567999999987 56665422 1123333322222  2234778999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccC
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      |++|+||+++.  ++.++|+|||++..+.
T Consensus       144 dl~~~nill~~--~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        144 DLSPANIFINS--KGICKIADFGLARRYG  170 (335)
T ss_pred             cccHHHeEECC--CCCEEECCccceeecc
Confidence            99999999985  7899999999998765

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.04  E-value=8.7e-10  Score=117.56  Aligned_cols=142  Identities=18%  Similarity=0.270  Sum_probs=100.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.||||..+.|+.  ++++||||.-..                              +.+-+.+-+|+        +
T Consensus        34 kKIGeGsFG~lf~G~Nl~nne~VAIKfEPr------------------------------kS~APQLrdEY--------r   75 (449)
T KOG1165|consen   34 KKIGEGSFGVLFLGKNLYNNEPVAIKFEPR------------------------------KSEAPQLRDEY--------R   75 (449)
T ss_pred             cccccCcceeeecccccccCceEEEEeccc------------------------------cCCcchHHHHH--------H
Confidence            5799999999999997  899999995211                              11223333443        2


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~--L~qI~~~GffHa  452 (760)
                          +.+.+..  ...||.||.-  -.-.++||||.+ |.+|.|+..+....+..+.++...+...  ++.+|.+.++.+
T Consensus        76 ----~YKlL~g--~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYR  148 (449)
T KOG1165|consen   76 ----TYKLLGG--TEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYR  148 (449)
T ss_pred             ----HHHHHcC--CCCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeec
Confidence                3333333  3467888741  223569999998 8999998877766677776655544433  677999999999


Q ss_pred             CCCCCcEEEeccC---CCcEEEEeecceecc-ChhhH
Q 004334          453 DPHPGNIAVDDVN---GGRLIFYDFGMMGSI-SPNIR  485 (760)
Q Consensus       453 DpHPGNILV~~~~---~g~l~LiDFG~v~~l-~~~~r  485 (760)
                      |+||.|+||..+.   ...|.++||||++.+ +++++
T Consensus       149 DIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tk  185 (449)
T KOG1165|consen  149 DIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTK  185 (449)
T ss_pred             ccCccceeecCCCCCCCceEEEEeccchhhhcCcccc
Confidence            9999999997522   235999999999976 44443

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.03  E-value=3.5e-10  Score=115.25  Aligned_cols=227  Identities=16%  Similarity=0.187  Sum_probs=133.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|.|.++.|+.|..  +.+.++||+.+|--.+.|.+++.||..+..-            .+...+++-.         
T Consensus        44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg------------~NIi~L~DiV---------  102 (338)
T KOG0668|consen   44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGG------------PNIIKLLDIV---------  102 (338)
T ss_pred             HHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCC------------CCeeehhhhh---------
Confidence            5799999999999996  7899999999998788888888877765420            0111111111         


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHP  456 (760)
                                .+|          .|....|+.||++......+-.. -...|...-...++ ..|...|+.|++|+|.||
T Consensus       103 ----------~Dp----------~SktpaLiFE~v~n~Dfk~ly~t-l~d~dIryY~~elL-kALdyCHS~GImHRDVKP  160 (338)
T KOG0668|consen  103 ----------KDP----------ESKTPSLIFEYVNNTDFKQLYPT-LTDYDIRYYIYELL-KALDYCHSMGIMHRDVKP  160 (338)
T ss_pred             ----------cCc----------cccCchhHhhhhccccHHHHhhh-hchhhHHHHHHHHH-HHHhHHHhcCcccccCCc
Confidence                      011          22334588889888765553211 01112222222222 336778999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEER  536 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~~~  536 (760)
                      .|++|+. ...++.|||||++-.+-+..-.+..-.  +=.-+-++    .+.+.....-..|+++++-.+..++-.-   
T Consensus       161 hNvmIdh-~~rkLrlIDWGLAEFYHp~~eYnVRVA--SRyfKGPE----LLVdy~~YDYSLD~WS~GcmlA~miFrk---  230 (338)
T KOG0668|consen  161 HNVMIDH-ELRKLRLIDWGLAEFYHPGKEYNVRVA--SRYFKGPE----LLVDYQMYDYSLDMWSLGCMLASMIFRK---  230 (338)
T ss_pred             ceeeech-hhceeeeeecchHhhcCCCceeeeeee--hhhcCCch----heeechhccccHHHHHHHHHHHHHHhcc---
Confidence            9999986 457899999999988877643322100  00112232    2333333344568888775544433110   


Q ss_pred             HHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHhhCCCcCCchhhhhh
Q 004334          537 LAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG--EDLLAIAADQPFRFPATFTFVV  596 (760)
Q Consensus       537 l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~--~~l~~l~~~~~i~lP~~~~~l~  596 (760)
                                   +.-|. .-+...    +-.+++.++  .++..-..+|++.+||.|--++
T Consensus       231 -------------epFFh-G~dN~D----QLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~  274 (338)
T KOG0668|consen  231 -------------EPFFH-GHDNYD----QLVKIAKVLGTDELYAYLNKYQIDLDPQFEDIL  274 (338)
T ss_pred             -------------CcccC-CCCCHH----HHHHHHHHhChHHHHHHHHHHccCCChhHhhHh
Confidence                         11111 111111    123444444  4677888888888888776544

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.03  E-value=6e-10  Score=127.18  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -+|.||++.|+++.+  +++..+||++.-...+. .                                       +|...
T Consensus       329 ~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~-~---------------------------------------~e~~~  368 (612)
T KOG0603|consen  329 ELGEGSFSAVKYCESSPTDQEPAVKIISKRADDN-Q---------------------------------------DEIPI  368 (612)
T ss_pred             ccCCCCccceeeeeccccccchhheecccccccc-c---------------------------------------cccch
Confidence            499999999999999  68999999864320000 0                                       00000


Q ss_pred             HHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      +.+    ..++++ +..-.++ +.....++|||.+.|.-+-+-..... .......++..++ .++..+|.+|++|||+|
T Consensus       369 ~~~----~~~h~niv~~~~v~-~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv-~Av~~LH~~gvvhRDLk  442 (612)
T KOG0603|consen  369 SLL----VRDHPNIVKSHDVY-EDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELV-SAVDYLHEQGVVHRDLK  442 (612)
T ss_pred             hhh----hcCCCcceeeccee-cCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHhcCeeecCCC
Confidence            111    112222 2333333 33456799999999987766332221 1111222333333 45788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  533 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~  533 (760)
                      |+|||+.+ ..|.|.|+|||....+.++    +.   .-  .-+-.++++++...--.++..|.|+++..++.|+..+
T Consensus       443 p~NIL~~~-~~g~lrltyFG~a~~~~~~----~~---tp--~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~  510 (612)
T KOG0603|consen  443 PGNILLDG-SAGHLRLTYFGFWSELERS----CD---TP--ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGR  510 (612)
T ss_pred             hhheeecC-CCCcEEEEEechhhhCchh----hc---cc--chhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCC
Confidence            99999952 4789999999999998776    10   00  1144667888877666688899999999998887653

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.03  E-value=5.2e-10  Score=118.67  Aligned_cols=191  Identities=17%  Similarity=0.182  Sum_probs=128.5

Q ss_pred             cccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ++||- +.+|.|.||.|-.++-  +|+.+|+||.+.++-  |..                              +|.+..
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKevi--iak------------------------------dEVAHT  215 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVI--IAK------------------------------DEVAHT  215 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhhe--eeh------------------------------HHhhhh
Confidence            34553 6899999999999998  699999998776431  111                              222222


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhh-hhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQILSHGF  449 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d-~~~l~~~g~d~~~la~~lv~~~L~qI~~~Gf  449 (760)
                      + -|-+-+...+     +|.+.--+.-.+-..+.+.||||..|+.|.- +..-+-...++.+.-..-+-..|..+|..++
T Consensus       216 l-TE~RVL~~~~-----HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~i  289 (516)
T KOG0690|consen  216 L-TENRVLQNCR-----HPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNI  289 (516)
T ss_pred             h-hHHHHHHhcc-----CcHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCe
Confidence            1 2222222221     1111111111122345699999999998863 3233334456666666666677999999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~-l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      +.+|+|-.|+|++.  ||.|++.|||+++. ++....       ...+.+.++++++++++-.-....+|-+.+...+++
T Consensus       290 vYRDlKLENLlLDk--DGHIKitDFGLCKE~I~~g~t-------~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYE  360 (516)
T KOG0690|consen  290 VYRDLKLENLLLDK--DGHIKITDFGLCKEEIKYGDT-------TKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYE  360 (516)
T ss_pred             eeeechhhhheecc--CCceEeeecccchhcccccce-------eccccCChhhcCchhhccccccceeehhhhhHHHHH
Confidence            99999999999986  99999999999975 222111       122458999999999987767778899999888777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++-
T Consensus       361 MmC  363 (516)
T KOG0690|consen  361 MMC  363 (516)
T ss_pred             HHh
Confidence            653

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.02  E-value=4.7e-09  Score=104.69  Aligned_cols=147  Identities=20%  Similarity=0.263  Sum_probs=102.9

Q ss_pred             CccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +..++-.|.-|.|+++...|+..+||-..|.-...-..|.++                            ......+||+
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kL----------------------------tr~Rt~~Ear   62 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKL----------------------------TRKRTKQEAR   62 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHH----------------------------HHHHHHHHHH
Confidence            356888899999999999999999997655433332222211                            1234568999


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCC-chhhhhh-hhhcCCCHH---HHHHHHHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQS-LDELGVDRK---RLGRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~-~L~d~~~-l~~~g~d~~---~la~~lv~~~L~qI~~~GffH  451 (760)
                      .+.+++..     .+.+|.+|........|.|||++|. ++.++.. ......+..   .+++ -+...+.-+|..+++|
T Consensus        63 ~l~k~~~~-----GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~-~iG~~igklH~ndiiH  136 (229)
T KOG3087|consen   63 LLAKCRAL-----GIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELAR-RIGELIGKLHDNDIIH  136 (229)
T ss_pred             HHHHHHHh-----CCCCceEEEEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHH-HHHHHHHHhhhCCeec
Confidence            99998653     6899999987778889999999994 4445332 222222222   2222 2334467789999999


Q ss_pred             cCCCCCcEEEeccCCCc--EEEEeeccee
Q 004334          452 ADPHPGNIAVDDVNGGR--LIFYDFGMMG  478 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~--l~LiDFG~v~  478 (760)
                      +|+...||++.+ ++++  +.++|||+..
T Consensus       137 GDLTTSNill~~-~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen  137 GDLTTSNILLRS-DGNQITPILIDFGLSS  164 (229)
T ss_pred             ccccccceEEec-CCCcCceEEEeecchh
Confidence            999999999986 3445  4999999864

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=1.7e-09  Score=121.50  Aligned_cols=183  Identities=17%  Similarity=0.203  Sum_probs=117.9

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +-||+|+-..||++.- +.+.+|+|-..-.                    .         .|     +.....+.+|...
T Consensus       367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~--------------------~---------~D-----~qtl~gy~nEI~l  412 (677)
T KOG0596|consen  367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLL--------------------E---------AD-----NQTLDGYRNEIAL  412 (677)
T ss_pred             HhhcCCCcceeeeeecCCCcchhhhHHHHh--------------------h---------cC-----HHHHHHHHHHHHH
Confidence            5799999999999998 4566666621000                    0         00     1223456788888


Q ss_pred             HHHHHHhcCCCCceeeceeee-cc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHH---HHHHHHHHHHHhCCcccc
Q 004334          378 AELFASNFKDMDYVKVPTIFW-EY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR---YAVESYLEQILSHGFFHA  452 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~-e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~---~lv~~~L~qI~~~GffHa  452 (760)
                      +.+|..+      ..|-+.|. +. .+-.||||||=+ ..|+.++..... .++.....   .-+-.+++.+|.+|++|.
T Consensus       413 L~KLkg~------~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~-~~~~~~lk~ywkqML~aV~~IH~~gIVHS  484 (677)
T KOG0596|consen  413 LNKLKGH------DKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKS-IDPDWFLKFYWKQMLLAVKTIHQHGIVHS  484 (677)
T ss_pred             HHHhcCC------ceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHhceeec
Confidence            8888543      34455553 22 345699999843 567776543322 22211111   122234667899999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCC----------CCCCCChHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGV----------LVPTGDTTA  521 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~-~lG~----------~~~~~D~~a  521 (760)
                      |+||.|+++-   .|.++|||||++..+.+++..-+.+-    ..|+..+|.++.+ ++..          +.+..|+|+
T Consensus       485 DLKPANFLlV---kG~LKLIDFGIA~aI~~DTTsI~kds----QvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWS  557 (677)
T KOG0596|consen  485 DLKPANFLLV---KGRLKLIDFGIANAIQPDTTSIVKDS----QVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWS  557 (677)
T ss_pred             CCCcccEEEE---eeeEEeeeechhcccCccccceeecc----ccCcccccCHHHHhhccccccCCCcceeecCccchhh
Confidence            9999999987   69999999999999988765433222    2356677766543 3321          456789999


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      ++=+++.|+
T Consensus       558 LGCILYqMv  566 (677)
T KOG0596|consen  558 LGCILYQMV  566 (677)
T ss_pred             hhhHHHHHH
Confidence            998887775

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.01  E-value=2e-10  Score=119.33  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      -++.+|..|+.|+|+||||++|+.  +--++++|||+++.-+.+++..+..-+..-    +....+.+...--.+...|+
T Consensus       168 GLKYLHsA~ILHRDIKPGNLLVNS--NCvLKICDFGLARvee~d~~~hMTqEVVTQ----YYRAPEiLMGaRhYs~AvDi  241 (449)
T KOG0664|consen  168 GLKYLHTANILHRDIKPGNLLVNS--NCILKICDFGLARTWDQRDRLNMTHEVVTQ----YYRAPELLMGARRYTGAVDI  241 (449)
T ss_pred             hhHHHhhcchhhccCCCccEEecc--CceEEecccccccccchhhhhhhHHHHHHH----HhccHHHhhcchhhcCccce
Confidence            478899999999999999999985  778999999999998888887766544432    33333334333344567799


Q ss_pred             HHHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLNS  532 (760)
Q Consensus       520 ~al~~~~~~~l~~  532 (760)
                      ++++=+..+++.+
T Consensus       242 WSVGCIFaELLgR  254 (449)
T KOG0664|consen  242 WSVGCIFAELLQR  254 (449)
T ss_pred             ehhhHHHHHHHhh
Confidence            9988776666543

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.4e-09  Score=113.20  Aligned_cols=199  Identities=17%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             hhhhcccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          290 DDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       290 ~~iF~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      .+.|..+++ +-+|.|..+.|-|+..  +|.+.|+|+.--.....                        ...+    ..+
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~------------------------~~e~----~~~   64 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTE------------------------SGET----PYE   64 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEeccccc------------------------CCcc----HHH
Confidence            345666665 6789999999999988  58899999764321111                        0001    233


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCC---HHHHHHHHHHHHHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAVESYLE  442 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d---~~~la~~lv~~~L~  442 (760)
                      ..+..++|...+++.    ..+|++ .+-.+| +-.+-.+||.|.++-+.|.|+....- .++   ...+++.+.+. ..
T Consensus        65 ~~EaT~~Ev~ILRqv----~GHP~II~l~D~y-es~sF~FlVFdl~prGELFDyLts~V-tlSEK~tR~iMrqlfeg-Ve  137 (411)
T KOG0599|consen   65 MREATRQEISILRQV----MGHPYIIDLQDVY-ESDAFVFLVFDLMPRGELFDYLTSKV-TLSEKETRRIMRQLFEG-VE  137 (411)
T ss_pred             HHHHHHHHHHHHHHh----cCCCcEEEeeeec-cCcchhhhhhhhcccchHHHHhhhhe-eecHHHHHHHHHHHHHH-HH
Confidence            333445666666554    344443 333333 44555689999999999999764221 112   22344444332 56


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC------CCC
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL------VPT  516 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~------~~~  516 (760)
                      .+|..+++|+|+||.|||+++  +.+|++.|||.+.++.+..+  +.+     +.+++.+++++.++-...      +..
T Consensus       138 ylHa~~IVHRDLKpENILldd--n~~i~isDFGFa~~l~~Gek--Lre-----lCGTPgYLAPEtikC~m~e~~pGYs~E  208 (411)
T KOG0599|consen  138 YLHARNIVHRDLKPENILLDD--NMNIKISDFGFACQLEPGEK--LRE-----LCGTPGYLAPETIKCSMYENHPGYSKE  208 (411)
T ss_pred             HHHHhhhhhcccChhheeecc--ccceEEeccceeeccCCchh--HHH-----hcCCCcccChhheeeecccCCCCccch
Confidence            688999999999999999986  78999999999999998765  222     358999999988764322      345


Q ss_pred             CChHHHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFLNS  532 (760)
Q Consensus       517 ~D~~al~~~~~~~l~~  532 (760)
                      .|.++.+.+++-++..
T Consensus       209 VD~Wa~GVImyTLLaG  224 (411)
T KOG0599|consen  209 VDEWACGVIMYTLLAG  224 (411)
T ss_pred             hhHHHHHHHHHHHHcC
Confidence            6899998877766654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.00  E-value=2.5e-09  Score=132.47  Aligned_cols=174  Identities=14%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||..+......                                        ..|.
T Consensus       695 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----------------------------------------~~~~  734 (968)
T PLN00113        695 ENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----------------------------------------SSEI  734 (968)
T ss_pred             ccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----------------------------------------HHHH
Confidence            46899999999999998  68999999754310000                                        0112


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCC-HHHHHHHHHHHHHHHHH---hCCccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQIL---SHGFFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d-~~~la~~lv~~~L~qI~---~~GffH  451 (760)
                      +.+.++    .|..-|.+..++ ......++||||++|++|.++..  ..... +..++.. +...+..+|   ..+++|
T Consensus       735 ~~l~~l----~HpnIv~~~~~~-~~~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~-ia~~L~yLH~~~~~~iiH  806 (968)
T PLN00113        735 ADMGKL----QHPNIVKLIGLC-RSEKGAYLIHEYIEGKNLSEVLR--NLSWERRRKIAIG-IAKALRFLHCRCSPAVVV  806 (968)
T ss_pred             HHHhhC----CCCCcceEEEEE-EcCCCCEEEEeCCCCCcHHHHHh--cCCHHHHHHHHHH-HHHHHHHhccCCCCCeec
Confidence            222222    232233333333 23356799999999999998753  11111 2233333 334467788   569999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||.||+++.  ++..++ +||..+.......          ..+.+.+++++....+..+...|+++++..+.+++.
T Consensus       807 ~dlkp~Nil~~~--~~~~~~-~~~~~~~~~~~~~----------~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~t  873 (968)
T PLN00113        807 GNLSPEKIIIDG--KDEPHL-RLSLPGLLCTDTK----------CFISSAYVAPETRETKDITEKSDIYGFGLILIELLT  873 (968)
T ss_pred             CCCCHHhEEECC--CCceEE-EeccccccccCCC----------ccccccccCcccccCCCCCcccchhhHHHHHHHHHh
Confidence            999999999985  444333 3665544322211          123567888888777777888999999988877765


Q ss_pred             H
Q 004334          532 S  532 (760)
Q Consensus       532 ~  532 (760)
                      .
T Consensus       874 g  874 (968)
T PLN00113        874 G  874 (968)
T ss_pred             C
Confidence            3

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.9e-10  Score=136.68  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             eEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH---HHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~---~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      .|+-||||+-..+.++..-....-++ ..+..+.+.   .+.+||..|++|||+||.|||+++  ++.++|.|||++..+
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~~~~~-d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~--~~~VKIGDFGLAt~~  747 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHFNSQR-DEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDS--RNSVKIGDFGLATDL  747 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhcccchhh-HHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcC--CCCeeecccccchhh
Confidence            58999999998888876543332122 223333332   367899999999999999999985  789999999999874


Q ss_pred             ChhhHHHHHHH-HHHH-----------hhcCHHHHHHHHHHcC---CCCCCCChHHHHHHHHHHHHHHHH
Q 004334          481 SPNIREGLLEA-FYGI-----------YEKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQFFLNSFEE  535 (760)
Q Consensus       481 ~~~~r~~l~~l-~~al-----------~~~D~~~v~~~l~~lG---~~~~~~D~~al~~~~~~~l~~~~~  535 (760)
                      -.......... +...           .-|+.-|+++++..--   ..+.+.|+++++-.+-+|+-+|..
T Consensus       748 ~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~T  817 (1351)
T KOG1035|consen  748 KENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGT  817 (1351)
T ss_pred             hhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCc
Confidence            32111111000 0011           1234557888877643   356788999999888777766643

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.98  E-value=2.2e-09  Score=114.16  Aligned_cols=243  Identities=18%  Similarity=0.256  Sum_probs=153.1

Q ss_pred             hcccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       293 F~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      ...|+. ..||.||++.|-.+++  +.+-+|+||.+.....                       +....||+..-...  
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~n-----------------------ddedidwvqtek~v--  303 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVN-----------------------DDEDIDWVQTEKHV--  303 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcC-----------------------CcccchhHHhhHHH--
Confidence            345664 7899999999999999  5789999987653211                       11224565432211  


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhh-hhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQILSHG  448 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d-~~~l~~~g~d~~~la~~lv~~~L~qI~~~G  448 (760)
                                  -+.-.++|.+.=-.....-.++.+.|.||++|+.|.= ....++...+..+.-..-+...+..+|+.|
T Consensus       304 ------------fe~asn~pflvglhscfqtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rg  371 (593)
T KOG0695|consen  304 ------------FEQASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERG  371 (593)
T ss_pred             ------------HHhccCCCeEEehhhhhcccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcC
Confidence                        1111233322211111223456799999999998753 333333333334444445666789999999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~-l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      ++.+|+|-.|+|++.  .|.|+|.|+||++. +.+.+.       ...+.+++.++++++++-.-..-.+|-+++...+.
T Consensus       372 iiyrdlkldnvllda--eghikltdygmcke~l~~gd~-------tstfcgtpnyiapeilrgeeygfsvdwwalgvlmf  442 (593)
T KOG0695|consen  372 IIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGLGPGDT-------TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMF  442 (593)
T ss_pred             eeeeeccccceEEcc--CCceeecccchhhcCCCCCcc-------cccccCCCcccchhhhcccccCceehHHHHHHHHH
Confidence            999999999999986  89999999999975 333221       12345799999999998666666789999987654


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHHhhhc
Q 004334          528 FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK  607 (760)
Q Consensus       528 ~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~lEGi~~  607 (760)
                      +++..        |.    +.+-.+..+|-          .+..   .-++++..+..+++|+.+.  +|+..+|.|...
T Consensus       443 emmag--------rs----pfdivgm~n~d----------~nte---dylfqvilekqiriprsls--vkas~vlkgfln  495 (593)
T KOG0695|consen  443 EMMAG--------RS----PFDIVGMDNPD----------MNTE---DYLFQVILEKQIRIPRSLS--VKASHVLKGFLN  495 (593)
T ss_pred             HHHcC--------CC----CcceecCCCcc----------cchh---HHHHHHHhhhcccccceee--hhhHHHHHHhhc
Confidence            44321        10    00011111110          1111   2356777788999999854  788888888765


Q ss_pred             c
Q 004334          608 G  608 (760)
Q Consensus       608 ~  608 (760)
                      .
T Consensus       496 k  496 (593)
T KOG0695|consen  496 K  496 (593)
T ss_pred             C
Confidence            3

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.97  E-value=4.2e-09  Score=116.06  Aligned_cols=186  Identities=18%  Similarity=0.213  Sum_probs=133.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|-|+||.||-++-  +|+-+|.|....          +-       +.+                ..-...-.+|..
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL~K----------KR-------iKk----------------r~ge~maLnEk~  237 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKLDK----------KR-------IKK----------------RKGETMALNEKQ  237 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHHHH----------HH-------HHH----------------hhhhHHhhHHHH
Confidence            5799999999999887  688888773211          00       000                001122346677


Q ss_pred             HHHHHHHhcCCCCceeeceee-eccCCCeEEEEeecCCCchhh-hhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIF-WEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy-~e~st~~vLVME~ieG~~L~d-~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      ++++....|     | |--.| .+-.+..+|||+.|.|+.|.= +-.....|++..+..=.  -+-.-|..+|..+++.+
T Consensus       238 iL~kV~s~F-----i-VslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYR  311 (591)
T KOG0986|consen  238 ILEKVSSPF-----I-VSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYR  311 (591)
T ss_pred             HHHHhccCc-----E-EEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeec
Confidence            777764322     2 22223 244567799999999998863 33344456765554333  33345888999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNS  532 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~  532 (760)
                      |+||.|||+++  .|.+.+.|.|++..+++....       +--.++..+|++++++-+..+-..|-+++.=.+++++..
T Consensus       312 DLKPeNILLDd--~GhvRISDLGLAvei~~g~~~-------~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G  382 (591)
T KOG0986|consen  312 DLKPENILLDD--HGHVRISDLGLAVEIPEGKPI-------RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAG  382 (591)
T ss_pred             cCChhheeecc--CCCeEeeccceEEecCCCCcc-------ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcc
Confidence            99999999996  899999999999999887652       112578999999999999988899999999888888764

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.97  E-value=9.9e-10  Score=112.99  Aligned_cols=188  Identities=18%  Similarity=0.224  Sum_probs=120.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|.|..|+|+..  +|+..|+|+..-.                .    +.      ..+.        +.+.+||+
T Consensus        17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~----------------k----~~------~~~~--------e~l~rEar   62 (355)
T KOG0033|consen   17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTK----------------K----LS------ARDF--------QKLEREAR   62 (355)
T ss_pred             HHHccCchHHHHHHHhccchHHHHHHHhhhh----------------h----hc------cccH--------HHHHHHHH
Confidence            3588999999999988  6888888864321                0    00      0111        12345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhh-hhhhhh-cCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDE-LGVDRKRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d-~~~l~~-~g~d~~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      ...    ++++..-+..-+.|. -.+-++||.|+++|..|.. +.+-.- ...+.....+.++++ +...|..|++|+|+
T Consensus        63 IC~----~LqHP~IvrL~~ti~-~~~~~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLea-l~yCH~n~IvHRDv  136 (355)
T KOG0033|consen   63 ICR----KLQHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILEA-LAYCHSNGIVHRDL  136 (355)
T ss_pred             HHH----hcCCCcEeehhhhhc-ccceeEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCceeccC
Confidence            444    444443333333331 1234799999999998864 221100 000111222222222 45567899999999


Q ss_pred             CCCcEEEeccCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  533 (760)
Q Consensus       455 HPGNILV~~~~~g-~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~  533 (760)
                      +|.|+++....++ .++|+|||++..++...      + ..-..+.+.+|++++++-.....+.|+++-...+..++..|
T Consensus       137 kP~nllLASK~~~A~vKL~~FGvAi~l~~g~------~-~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~  209 (355)
T KOG0033|consen  137 KPENLLLASKAKGAAVKLADFGLAIEVNDGE------A-WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY  209 (355)
T ss_pred             ChhheeeeeccCCCceeecccceEEEeCCcc------c-cccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCC
Confidence            9999999753333 69999999999998432      1 22346899999999999988889999999998877776654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.6e-09  Score=130.86  Aligned_cols=140  Identities=21%  Similarity=0.283  Sum_probs=88.2

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +-+|.|++|+||+|+. +|+.||+||++|-..    +|+.|...+..-+.   +.                     +..-
T Consensus       704 ~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~----WEfYI~~q~~~RLk---~~---------------------~~~~  755 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATHSNGKLVALKVEKPPNP----WEFYICLQVMERLK---PQ---------------------MLPS  755 (974)
T ss_pred             eeeccccceEEEEeecCCCcEEEEEeecCCCc----eeeeehHHHHHhhc---hh---------------------hhcc
Confidence            3599999999999999 799999999998422    22333222221111   00                     0000


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDpH  455 (760)
                      ...+...            | -+.+..+||+||.+=++|-|+.. .....+..-++-..+  -.+++++|.+||+|||+|
T Consensus       756 ~~~~~~a------------~-~~~~~S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiK  821 (974)
T KOG1166|consen  756 IMHISSA------------H-VFQNASVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIK  821 (974)
T ss_pred             hHHHHHH------------H-ccCCcceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHhcceecccCC
Confidence            0001000            0 24567899999999999988765 222223322222222  234789999999999999


Q ss_pred             CCcEEEecc-----CCCcEEEEeecceecc
Q 004334          456 PGNIAVDDV-----NGGRLIFYDFGMMGSI  480 (760)
Q Consensus       456 PGNILV~~~-----~~g~l~LiDFG~v~~l  480 (760)
                      |.|+|++..     +..-|+|||||.+-.+
T Consensus       822 PDNfll~~~~~~~~~~~~l~lIDfG~siDm  851 (974)
T KOG1166|consen  822 PDNFLLRREICADSDSKGLYLIDFGRSIDM  851 (974)
T ss_pred             cceeEeecccCCCCcccceEEEecccceee
Confidence            999999732     1235999999987554

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.96  E-value=1.4e-09  Score=113.35  Aligned_cols=171  Identities=20%  Similarity=0.247  Sum_probs=94.8

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCC-chhh---HHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDL---FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPg-i~~~---i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      -+|+|+.|||++++.  +|.-.|||..+.. -.+.   |-.|++++.                                 
T Consensus        99 dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~---------------------------------  145 (391)
T KOG0983|consen   99 DLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVL---------------------------------  145 (391)
T ss_pred             hhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHh---------------------------------
Confidence            489999999999999  5899999976542 2221   112222111                                 


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeecc--CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHH----hC
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL----SH  447 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~----~~  447 (760)
                                  ..++.-+|-+.|..+  .+.-.+.||.+. .-.+.+...- .+.-+++++..+.-+..+.++    .|
T Consensus       146 ------------~s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C~ekLlkri-k~piPE~ilGk~tva~v~AL~YLKeKH  211 (391)
T KOG0983|consen  146 ------------KSHDCPYIVQCFGYFITNTDVFICMELMS-TCAEKLLKRI-KGPIPERILGKMTVAIVKALYYLKEKH  211 (391)
T ss_pred             ------------hccCCCeeeeeeeEEeeCchHHHHHHHHH-HHHHHHHHHh-cCCchHHhhhhhHHHHHHHHHHHHHhc
Confidence                        111112222222222  233355566552 1122222111 122344555554444444443    68


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC---CCCCChHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL---VPTGDTTAVRR  524 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~---~~~~D~~al~~  524 (760)
                      |++|+|.||.|||+++  .|.|+|+|||+++++.+.....       =..+=+.+|+++-++-.-.   .-..|+|++.-
T Consensus       212 ~viHRDvKPSNILlDe--~GniKlCDFGIsGrlvdSkAht-------rsAGC~~YMaPERidp~~~~kYDiRaDVWSlGI  282 (391)
T KOG0983|consen  212 GVIHRDVKPSNILLDE--RGNIKLCDFGISGRLVDSKAHT-------RSAGCAAYMAPERIDPPDKPKYDIRADVWSLGI  282 (391)
T ss_pred             ceeecccCccceEEcc--CCCEEeecccccceeecccccc-------cccCCccccCccccCCCCCCccchhhhhhhhcc
Confidence            9999999999999986  8999999999999997753221       1234455666655443210   11235566554


Q ss_pred             HH
Q 004334          525 TA  526 (760)
Q Consensus       525 ~~  526 (760)
                      .+
T Consensus       283 Tl  284 (391)
T KOG0983|consen  283 TL  284 (391)
T ss_pred             ch
Confidence            43

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.93  E-value=8.6e-09  Score=104.05  Aligned_cols=176  Identities=16%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -||.|.+|||-+-++  +|+-.|||-.+--+..+                                   ....+..|...
T Consensus        53 elGrGayG~vekmrh~~sg~imAvKri~~tvn~q-----------------------------------~q~r~L~dldi   97 (282)
T KOG0984|consen   53 ELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQ-----------------------------------EQKRLLMDLDI   97 (282)
T ss_pred             hhcCCccchhhheeeccCCeEEEEeeehhhcChH-----------------------------------HHHHHHHhhhh
Confidence            489999999988888  79999999655432211                                   00111111111


Q ss_pred             HHHHHHhcCCCCceeeceeeecc--CCCeEEEEeecCCCchhhhh--hhhhcCCCHHHHHHHHHHHH---HHHHH-hCCc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQ--SLDELGVDRKRLGRYAVESY---LEQIL-SHGF  449 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~--st~~vLVME~ieG~~L~d~~--~l~~~g~d~~~la~~lv~~~---L~qI~-~~Gf  449 (760)
                            .....+-..+-..|..+  +.+-++.||.++ .+++.+-  .++..+.-++.+...++-+.   +..+| ...+
T Consensus        98 ------~~r~~~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~v  170 (282)
T KOG0984|consen   98 ------IMRTVDCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSV  170 (282)
T ss_pred             ------hccCCCCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhh
Confidence                  11111111222223222  467799999986 3455432  23333433444444443333   44455 4589


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC----CCCCChHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL----VPTGDTTAVRRT  525 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~----~~~~D~~al~~~  525 (760)
                      +|+|.||+|||++.  +|+++++|||+++.+.+....       .+..+=-.+++++.++-+.-    +-..|++++.-.
T Consensus       171 IHRDvKPsNiLIn~--~GqVKiCDFGIsG~L~dSiAk-------t~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGIt  241 (282)
T KOG0984|consen  171 IHRDVKPSNILINY--DGQVKICDFGISGYLVDSIAK-------TMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGIT  241 (282)
T ss_pred             hhccCCcceEEEcc--CCcEEEcccccceeehhhhHH-------HHhcCCCccCChhhcCcccCcccceeehhhhhhhhh
Confidence            99999999999986  899999999999999775332       22234445666666654432    234688887754


Q ss_pred             H
Q 004334          526 A  526 (760)
Q Consensus       526 ~  526 (760)
                      +
T Consensus       242 m  242 (282)
T KOG0984|consen  242 M  242 (282)
T ss_pred             h
Confidence            3

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.93  E-value=1.4e-09  Score=115.30  Aligned_cols=190  Identities=18%  Similarity=0.165  Sum_probs=119.2

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEec--CC-chhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQR--PG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqr--Pg-i~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      .+-+|+|.+|.|-.++-  +|.++||||..  || .+..+-++++++...                              
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~C------------------------------  132 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQC------------------------------  132 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHh------------------------------
Confidence            35799999999999987  79999999853  32 122222222222211                              


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHH--HHHHHHHHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK--RLGRYAVESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~--~la~~lv~~~L~qI~~~Gff  450 (760)
                      +-..|+-++-+.|             +..++.|||||-+.|++|-.-+.... .++..  .....-+...|.-+|..|+-
T Consensus       133 qgh~nilqLiefF-------------Edd~~FYLVfEKm~GGplLshI~~~~-~F~E~EAs~vvkdia~aLdFlH~kgIA  198 (463)
T KOG0607|consen  133 QGHKNILQLIEFF-------------EDDTRFYLVFEKMRGGPLLSHIQKRK-HFNEREASRVVKDIASALDFLHTKGIA  198 (463)
T ss_pred             cCCccHHHHHHHh-------------cccceEEEEEecccCchHHHHHHHhh-hccHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            0012222222333             33466799999999999876332111 12211  12222345668999999999


Q ss_pred             ccCCCCCcEEEeccCC-CcEEEEeecceeccChh------hHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCC
Q 004334          451 HADPHPGNIAVDDVNG-GRLIFYDFGMMGSISPN------IREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGD  518 (760)
Q Consensus       451 HaDpHPGNILV~~~~~-g~l~LiDFG~v~~l~~~------~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D  518 (760)
                      |+|+||.|||..+++. ..++++||-+...+...      ..-.+     ..--+..++|++++.+.     -+.....|
T Consensus       199 HRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L-----~tPvGSAEfMAPEVVd~fv~qA~~YDKrCD  273 (463)
T KOG0607|consen  199 HRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL-----LTPVGSAEFMAPEVVDVFVDQATFYDKRCD  273 (463)
T ss_pred             cccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc-----cCcccchhhcchhHHhhhcccccccccccc
Confidence            9999999999975221 25899999876543211      11111     11246778888887764     34456779


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLNSFEER  536 (760)
Q Consensus       519 ~~al~~~~~~~l~~~~~~  536 (760)
                      .+++..+++-|+..|.+.
T Consensus       274 lwSLGvIlYImLsGYpPF  291 (463)
T KOG0607|consen  274 LWSLGVILYIMLSGYPPF  291 (463)
T ss_pred             HHHHHHHHHHHHhCCCCc
Confidence            999999999999988543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.92  E-value=2.5e-09  Score=117.11  Aligned_cols=137  Identities=17%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             CccccccccccEEEEEEE-C----CeeEEEEEecCCc-hhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARL-K----GEEVVVKVQRPGL-KDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l-~----G~~VAVKVqrPgi-~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ..++||.|+|+.||+|++ .    ++.||+|-.++-- ...+..+++.|..+..                          
T Consensus        40 ~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG--------------------------   93 (418)
T KOG1167|consen   40 VVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGG--------------------------   93 (418)
T ss_pred             hhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhcc--------------------------
Confidence            346899999999999998 3    5789999655421 1223333333322211                          


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHG  448 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~--~L~qI~~~G  448 (760)
                          ..|...+...++             ..+..++||||.+-....++..    +++-..+-..+-..  .+..+|..|
T Consensus        94 ----~~ni~~~~~~~r-------------nnd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~G  152 (418)
T KOG1167|consen   94 ----SDNIIKLNGCFR-------------NNDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNG  152 (418)
T ss_pred             ----chhhhcchhhhc-------------cCCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHHHHHhhhhhccC
Confidence                111222222222             2345689999999888777643    12333333333322  377889999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccC
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      ++|+|+||+|++.+. ..++-.|+|||++...+
T Consensus       153 IvHRDiKpsNFL~n~-~t~rg~LvDFgLA~~~d  184 (418)
T KOG1167|consen  153 IVHRDIKPSNFLYNR-RTQRGVLVDFGLAQRYD  184 (418)
T ss_pred             ccccCCCcccccccc-ccCCceEEechhHHHHH
Confidence            999999999999986 57889999999998643

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=4.1e-09  Score=116.04  Aligned_cols=169  Identities=19%  Similarity=0.186  Sum_probs=107.3

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +-||.|-||.|+||.+.|+.|||||-..--++...++-+|...+                           .|+  ..|+
T Consensus       217 e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTv---------------------------mLR--HENI  267 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTV---------------------------MLR--HENI  267 (513)
T ss_pred             EEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHH---------------------------Hhc--cchh
Confidence            57999999999999999999999996542222211111111110                           111  2233


Q ss_pred             HHH-HHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH--------hC
Q 004334          379 ELF-ASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL--------SH  447 (760)
Q Consensus       379 ~~f-~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~--------~~  447 (760)
                      -.| +...++.          ...|+.+||++|-|-++|.|++.  ...++..........  .-|..+|        .-
T Consensus       268 LgFIaaD~~~~----------gs~TQLwLvTdYHe~GSL~DyL~--r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKP  335 (513)
T KOG2052|consen  268 LGFIAADNKDN----------GSWTQLWLVTDYHEHGSLYDYLN--RNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKP  335 (513)
T ss_pred             hhhhhccccCC----------CceEEEEEeeecccCCcHHHHHh--hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCc
Confidence            333 1111111          24578999999999999999864  344555544444332  2255555        23


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      .+-|||+|.-||||..  +|..++.|+|++.+.+....  .++.--.---++..+|++++++-.+
T Consensus       336 aIAHRDlKSKNILVKk--n~~C~IADLGLAv~h~~~t~--~idi~~N~rVGTKRYMAPEvLdeti  396 (513)
T KOG2052|consen  336 AIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSDTD--TIDIPPNPRVGTKRYMAPEVLDETI  396 (513)
T ss_pred             hhhccccccccEEEcc--CCcEEEeeceeeEEecccCC--cccCCCCCccceeeccChHHhhhhc
Confidence            5999999999999985  89999999999988776541  1111111123677889999887543

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-09  Score=113.98  Aligned_cols=188  Identities=13%  Similarity=0.096  Sum_probs=123.0

Q ss_pred             CccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.+.||.|--|.|-.+..  +|+..|+||.+-.-+..-+-|+.   +.                                
T Consensus        66 s~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLH---w~--------------------------------  110 (400)
T KOG0604|consen   66 SWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELH---WM--------------------------------  110 (400)
T ss_pred             hhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhh---hh--------------------------------
Confidence            447899999999999988  59999999864321111111110   00                                


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                               .-.+..-|.|-.||...-   ....+|||.++|+.|..-...+. ..+..++.++.+  +...+..+|..+
T Consensus       111 ---------~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n  181 (400)
T KOG0604|consen  111 ---------ASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN  181 (400)
T ss_pred             ---------hcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence                     011223355555554321   23478999999999987443322 224444444332  445578899999


Q ss_pred             ccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      +-|||+||.|+|+... ++-.++|.|||+++.-....  .+.     .-.-++.+++++.+.-.......|+++++..++
T Consensus       182 IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~--~L~-----TPc~TPyYvaPevlg~eKydkscdmwSlgVimY  254 (400)
T KOG0604|consen  182 IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPG--DLM-----TPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMY  254 (400)
T ss_pred             hhhccCChhheeeecCCCCcceEecccccccccCCCc--ccc-----CCcccccccCHHHhCchhcCCCCCccchhHHHH
Confidence            9999999999999752 23469999999998765321  110     112467888998876666667789999999998


Q ss_pred             HHHHHHHH
Q 004334          528 FFLNSFEE  535 (760)
Q Consensus       528 ~~l~~~~~  535 (760)
                      -++-.|-.
T Consensus       255 IlLCGyPP  262 (400)
T KOG0604|consen  255 ILLCGYPP  262 (400)
T ss_pred             HhhcCCCc
Confidence            88877644

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.86  E-value=1.3e-08  Score=102.98  Aligned_cols=146  Identities=19%  Similarity=0.241  Sum_probs=89.4

Q ss_pred             ccccccccccEEEEEEEC-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      -+|++.|..++||+.+.. |+.+++|+-+++-..                                   .....+..|++
T Consensus         3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~-----------------------------------~~~~~~~~E~~   47 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL-----------------------------------PSAHDVAREYR   47 (223)
T ss_pred             ceecCCCccceEEEEEecCCcceEEEeCCCcccC-----------------------------------cccccHHHHHH
Confidence            478999999999999984 699999986553110                                   00112456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCC-----CeEEEEeecCCCchhhhhh----------------------hhhc----
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQS----------------------LDEL----  425 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st-----~~vLVME~ieG~~L~d~~~----------------------l~~~----  425 (760)
                      .++.+++.     .+.+|+++.-...     ..+++|||++|.++.+...                      +...    
T Consensus        48 ~~~~l~~~-----~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~  122 (223)
T cd05154          48 VLRALAGT-----GVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAA  122 (223)
T ss_pred             HHHHhhCC-----CCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhh
Confidence            77777542     4567887654433     3589999999998866321                      0000    


Q ss_pred             -CC---C------HHHHHHH-------------HHHHHHHHH-------HhCCccccCCCCCcEEEeccCCCcEEEEeec
Q 004334          426 -GV---D------RKRLGRY-------------AVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  475 (760)
Q Consensus       426 -g~---d------~~~la~~-------------lv~~~L~qI-------~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  475 (760)
                       +.   .      ...+...             .+...++.+       ....++|+|+||+||++++..++.+.+|||+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e  202 (223)
T cd05154         123 VGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWE  202 (223)
T ss_pred             cCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecc
Confidence             00   0      0000000             001111111       1367899999999999985213568999999


Q ss_pred             ceeccChh
Q 004334          476 MMGSISPN  483 (760)
Q Consensus       476 ~v~~l~~~  483 (760)
                      .++.-++.
T Consensus       203 ~~~~g~~~  210 (223)
T cd05154         203 LATLGDPL  210 (223)
T ss_pred             ccccCChH
Confidence            99866553

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.85  E-value=6.8e-08  Score=103.10  Aligned_cols=141  Identities=15%  Similarity=0.031  Sum_probs=89.7

Q ss_pred             EEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004334          308 QVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKD  387 (760)
Q Consensus       308 QVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~  387 (760)
                      .|.+..+.|+.+.||.+.+.....      +++.+..+   -.|                .....+|.+++.++.+.   
T Consensus        37 rvvr~~~~g~~~~vKr~~~~~~~~------~~k~l~~~---~~p----------------~~~a~rE~~~l~~L~~~---   88 (268)
T PRK15123         37 RTLRFELAGKSYFLKWHRGTGWGE------IFKNLLSL---RMP----------------VLGADREWRAIHRLHEV---   88 (268)
T ss_pred             eEEEEEECCEEEEEEEecCCcHHH------Hhhhhccc---ccc----------------cHHHHHHHHHHHHHHHc---
Confidence            477888899999999776643221      11111100   000                01245788889888653   


Q ss_pred             CCceeecee--eecc-----CCCeEEEEeecCCC-chhhhhhhh-hcCCC---HHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          388 MDYVKVPTI--FWEY-----TTPQILTMEYVPGI-KINRIQSLD-ELGVD---RKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       388 ~~~V~VP~v--y~e~-----st~~vLVME~ieG~-~L~d~~~l~-~~g~d---~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                        +|.+|.+  |.+.     ....+||||+++|. ++.++.... ....+   ...+... +..++.++|..|++|+|++
T Consensus        89 --GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~-la~~i~~LH~~Gi~HgDL~  165 (268)
T PRK15123         89 --GVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKR-VATMVRDMHAAGINHRDCY  165 (268)
T ss_pred             --CCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHH-HHHHHHHHHHCcCccCCCC
Confidence              4677776  4332     23478999999996 788875311 11111   1223232 4456888999999999999


Q ss_pred             CCcEEEec-----cCCCcEEEEeecceec
Q 004334          456 PGNIAVDD-----VNGGRLIFYDFGMMGS  479 (760)
Q Consensus       456 PGNILV~~-----~~~g~l~LiDFG~v~~  479 (760)
                      |+|||++.     .+++++.||||+.+..
T Consensus       166 ~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        166 ICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             hhhEEEeccccCCCCCceEEEEECCcccc
Confidence            99999974     1246899999998853

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.85  E-value=1.7e-09  Score=120.25  Aligned_cols=117  Identities=20%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             EEEEeecCCCchhhhhhhhhcCCC--HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          405 ILTMEYVPGIKINRIQSLDELGVD--RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       405 vLVME~ieG~~L~d~~~l~~~g~d--~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      |+.||-|=|+.|+.+...+. .+|  ..+.....+-..+.++|.+||+.+|+||.|++++.  +|-++|.|||.++.+..
T Consensus       496 YmLmEaClGGElWTiLrdRg-~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~--~Gy~KLVDFGFAKki~~  572 (732)
T KOG0614|consen  496 YMLMEACLGGELWTILRDRG-SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDN--RGYLKLVDFGFAKKIGS  572 (732)
T ss_pred             hhhHHhhcCchhhhhhhhcC-CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeecc--CCceEEeehhhHHHhcc
Confidence            68999999999998765332 222  23333444445578999999999999999999986  89999999999999977


Q ss_pred             hhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          483 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       483 ~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..+..       .+.+++++++++++-..-....+|.+++.-.+++++.
T Consensus       573 g~KTw-------TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~  614 (732)
T KOG0614|consen  573 GRKTW-------TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLT  614 (732)
T ss_pred             CCcee-------eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHc
Confidence            65531       2458999999998866556777899999877766653

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.82  E-value=6.7e-09  Score=117.15  Aligned_cols=185  Identities=19%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH--
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE--  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E--  374 (760)
                      .|+|.|.+|||..|++  +...|+||....   +.|-.|.++        .  +       .++-.+-.|+.-.-.-+  
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~K---eRIL~DtWv--------r--D-------rkLGtVp~EIqIla~l~~~  626 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFK---ERILVDTWV--------R--D-------RKLGTVPSEIQILATLNKH  626 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehhh---hhhhhhhhh--------c--c-------cccCccchhHHHHHHhhhc
Confidence            7999999999999999  478999997644   222223210        0  0       11111111221110111  


Q ss_pred             -HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEee-cCCCchhhhhhhhhcCCC-HHHHHHHHHHHHHHHHHhCCccc
Q 004334          375 -AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY-VPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       375 -A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~-ieG~~L~d~~~l~~~g~d-~~~la~~lv~~~L~qI~~~GffH  451 (760)
                       ..|+-++-..|.++             .-.+|+||- =+|+.|.|+......-.+ ...+.=..+.+..+.+|..|++|
T Consensus       627 sH~NIlKlLdfFEdd-------------d~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivh  693 (772)
T KOG1152|consen  627 SHENILKLLDFFEDD-------------DYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVH  693 (772)
T ss_pred             CccchhhhhheeecC-------------CeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCcee
Confidence             23333333334333             334788884 568888887754432111 11222223444567789999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  526 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~  526 (760)
                      ||+|-.|++++.  +|-++|||||.+......-    .    -++.++.++++++++.- .+....-|.++++-.+
T Consensus       694 rdikdenvivd~--~g~~klidfgsaa~~ksgp----f----d~f~gtv~~aapevl~g~~y~gk~qdiwalgill  759 (772)
T KOG1152|consen  694 RDIKDENVIVDS--NGFVKLIDFGSAAYTKSGP----F----DVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILL  759 (772)
T ss_pred             cccccccEEEec--CCeEEEeeccchhhhcCCC----c----ceeeeeccccchhhhCCCccCCCcchhhhhhhee
Confidence            999999999985  8999999999887654321    1    23457888899988764 3455567999887543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.82  E-value=1.1e-08  Score=119.49  Aligned_cols=181  Identities=15%  Similarity=0.122  Sum_probs=123.5

Q ss_pred             CccccccccccE-EEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQ-VHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       297 d~~PIasaSiGQ-VhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +++-+|.||-|. ||+|...|++||||-.                                       +.||-....+|.
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrl---------------------------------------l~e~~~~A~rEi  553 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVYEGREVAVKRL---------------------------------------LEEFFDFAQREI  553 (903)
T ss_pred             cHHHcccCCCCcEEEEEeeCCceehHHHH---------------------------------------hhHhHHHHHHHH
Confidence            345677888886 7999999999999922                                       223333445676


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCC-----eEEEEeecCCCchhhhhhhh-----hcC-CCHHHHHHHHHHHHHHHH
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKINRIQSLD-----ELG-VDRKRLGRYAVESYLEQI  444 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~-----~vLVME~ieG~~L~d~~~l~-----~~g-~d~~~la~~lv~~~L~qI  444 (760)
                      .++..-.    ++++     ++.-||++     .|++.|.|. .+|+|+....     ..+ +++..+...++. .+..+
T Consensus       554 ~lL~eSD----~H~N-----viRyyc~E~d~qF~YIalELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~-GlaHL  622 (903)
T KOG1027|consen  554 QLLQESD----EHPN-----VIRYYCSEQDRQFLYIALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIAS-GLAHL  622 (903)
T ss_pred             HHHHhcc----CCCc-----eEEEEeeccCCceEEEEehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHH-HHHHH
Confidence            6666432    2333     33344443     599999985 4677765442     111 344444444333 47889


Q ss_pred             HhCCccccCCCCCcEEEecc---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          445 LSHGFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~---~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      |..+++|+|+||.||||...   ...+++|.|||+++.++... ..+..  .+-..+.....+++++........+|+.+
T Consensus       623 Hsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~-sS~~r--~s~~sGt~GW~APE~L~~~~~~~avDiFs  699 (903)
T KOG1027|consen  623 HSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK-SSFSR--LSGGSGTSGWQAPEQLREDRKTQAVDIFS  699 (903)
T ss_pred             HhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCc-chhhc--ccCCCCcccccCHHHHhccccCcccchhh
Confidence            99999999999999999841   22478999999999997653 33333  34456888899999999888777888888


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      ++-.+++.+
T Consensus       700 lGCvfyYvl  708 (903)
T KOG1027|consen  700 LGCVFYYVL  708 (903)
T ss_pred             cCceEEEEe
Confidence            776655443

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.4e-08  Score=115.01  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=70.3

Q ss_pred             cCCCeEEEEeecCCCchhhhhhhhhcCCCHH--HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecce
Q 004334          400 YTTPQILTMEYVPGIKINRIQSLDELGVDRK--RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  477 (760)
Q Consensus       400 ~st~~vLVME~ieG~~L~d~~~l~~~g~d~~--~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v  477 (760)
                      |.+..++..|||.|+-++.+.---..++...  ++.-.-+-..|..+|..+++|+|+|.||||++-  +|.|.|.|||..
T Consensus       100 ~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~Tl--dGdirLADFGVS  177 (1187)
T KOG0579|consen  100 FENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTL--DGDIRLADFGVS  177 (1187)
T ss_pred             ccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEe--cCcEeeeccccc
Confidence            4577899999999999987642212222222  222223334578899999999999999999986  899999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004334          478 GSISPNIREGLLEAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       478 ~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~  508 (760)
                      .........  .+.    +-+++..|++++.
T Consensus       178 AKn~~t~qk--RDs----FIGTPYWMAPEVv  202 (1187)
T KOG0579|consen  178 AKNKSTRQK--RDS----FIGTPYWMAPEVV  202 (1187)
T ss_pred             ccchhHHhh--hcc----ccCCcccccchhe
Confidence            776543221  112    2357777777764

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.80  E-value=2.2e-08  Score=111.90  Aligned_cols=143  Identities=27%  Similarity=0.354  Sum_probs=85.8

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCc--hhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGL--KDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi--~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      -.|.|-|+.|.+|..  .|+.|||||.|.+-  .+.=..++.||+.+..    ..|.         .            -
T Consensus       439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~----AD~E---------d------------k  493 (752)
T KOG0670|consen  439 YTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLND----ADPE---------D------------K  493 (752)
T ss_pred             ccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhc----cCch---------h------------h
Confidence            478999999999999  59999999998751  1122234555554432    1111         0            0


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh--hhcCCCHHHHHHHHHHHHHHH-------HHh
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAVESYLEQ-------ILS  446 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l--~~~g~d~~~la~~lv~~~L~q-------I~~  446 (760)
                      .+.-++...|.             +....|||.|-+. ..|.+++.-  ...|+..+     .++.|.+|       +-.
T Consensus       494 ~Hclrl~r~F~-------------hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ik-----aVRsYaqQLflALklLK~  554 (752)
T KOG0670|consen  494 FHCLRLFRHFK-------------HKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIK-----AVRSYAQQLFLALKLLKK  554 (752)
T ss_pred             hHHHHHHHHhh-------------hcceeEEEehhhh-chHHHHHHHhCcccceeeh-----HHHHHHHHHHHHHHHHHh
Confidence            11112222222             2234577777652 334444321  11122222     23444444       447


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG  487 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~  487 (760)
                      .||+|||+||.||||+. ....++|||||.+...++..-.-
T Consensus       555 c~vlHaDIKPDNiLVNE-~k~iLKLCDfGSA~~~~eneitP  594 (752)
T KOG0670|consen  555 CGVLHADIKPDNILVNE-SKNILKLCDFGSASFASENEITP  594 (752)
T ss_pred             cCeeecccCccceEecc-CcceeeeccCccccccccccccH
Confidence            89999999999999986 45679999999999988765443

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=5.6e-08  Score=106.71  Aligned_cols=190  Identities=16%  Similarity=0.159  Sum_probs=112.7

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -+|.|+|..||+|.+  ..+.|||||-+-+                              .+|.+   |-......-|  
T Consensus       470 LLGrGGFSEVyKAFDl~EqRYvAvKIHqlN------------------------------K~Wrd---EKKeNYhKHA--  514 (775)
T KOG1151|consen  470 LLGRGGFSEVYKAFDLTEQRYVAVKIHQLN------------------------------KNWRD---EKKENYHKHA--  514 (775)
T ss_pred             HhccccHHHHHHhcccchhheeeEeeehhc------------------------------cchhh---HhhhhHHHHH--
Confidence            589999999999998  5899999985431                              12322   1111111111  


Q ss_pred             HHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH---HHHHHHH--hCCc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQIL--SHGF  449 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~---~~L~qI~--~~Gf  449 (760)
                       .+=.+.++..++..|-+.|.-++   ...+-|.|||+|-.|+=+...... ...+ -|+.++-   ..|.++-  .--+
T Consensus       515 -cREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhkl-mSEK-EARSIiMQiVnAL~YLNEikpPI  591 (775)
T KOG1151|consen  515 -CREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKL-MSEK-EARSIIMQIVNALKYLNEIKPPI  591 (775)
T ss_pred             -HHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhh-hhHH-HHHHHHHHHHHHHHHHhccCCCe
Confidence             11122233333445556665443   456899999999998765432221 1111 2222221   2244443  3469


Q ss_pred             cccCCCCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCC----CCCChHHHH
Q 004334          450 FHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLV----PTGDTTAVR  523 (760)
Q Consensus       450 fHaDpHPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l-~~al~~~D~~~v~~~l~~lG~~~----~~~D~~al~  523 (760)
                      +|-|+||||||+.. ..-|.|++.|||+.+.++++.-.....+ +..-..+++-++.++..-.|.-.    ..+|+|++.
T Consensus       592 IHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvG  671 (775)
T KOG1151|consen  592 IHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVG  671 (775)
T ss_pred             eeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeee
Confidence            99999999999863 1237899999999999887654322211 11223577777877776566333    346888887


Q ss_pred             HHHH
Q 004334          524 RTAQ  527 (760)
Q Consensus       524 ~~~~  527 (760)
                      .+.+
T Consensus       672 VIFy  675 (775)
T KOG1151|consen  672 VIFY  675 (775)
T ss_pred             hhhh
Confidence            6543

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=98.72  E-value=2.3e-08  Score=116.54  Aligned_cols=186  Identities=13%  Similarity=0.120  Sum_probs=128.4

Q ss_pred             ccccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ...||+|.||.||+|.+  +|+    +|||||..-.-..                                   +-...+
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~-----------------------------------~~s~e~  745 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSP-----------------------------------KASIEL  745 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCc-----------------------------------hhhHHH
Confidence            35799999999999999  554    7999986431100                                   001123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  449 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gf  449 (760)
                      .+||-+|.++.    +...+++-.+-  ..+...||++|++++.|.|+....+..+..+.+.....  ...+++|+++++
T Consensus       746 LdeAl~masld----Hpnl~RLLgvc--~~s~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrl  819 (1177)
T KOG1025|consen  746 LDEALRMASLD----HPNLLRLLGVC--MLSTLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRL  819 (1177)
T ss_pred             HHHHHHHhcCC----CchHHHHhhhc--ccchHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcch
Confidence            44555554441    11112222222  23447899999999999998877776666666655543  344788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|||+-..|+||..  -..+++.|||++.-+.++..+..+.    ...--+..|+=+.+.....+...|++++...+=++
T Consensus       820 VHrdLaaRNVLVks--P~hvkitdfgla~ll~~d~~ey~~~----~gK~pikwmale~i~~~~~thqSDVWsfGVtiWEl  893 (1177)
T KOG1025|consen  820 VHRDLAARNVLVKS--PNHVKITDFGLAKLLAPDEKEYSAP----GGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWEL  893 (1177)
T ss_pred             hhhhhhhhheeecC--CCeEEEEecchhhccCccccccccc----ccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHH
Confidence            99999999999985  5689999999999998876653321    12223466777777788889999999999876555


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       894 m  894 (1177)
T KOG1025|consen  894 M  894 (1177)
T ss_pred             H
Confidence            4

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.72  E-value=2.9e-08  Score=98.23  Aligned_cols=143  Identities=22%  Similarity=0.287  Sum_probs=84.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|.+|.|++|+.  +++-||+|-.|-+-.+.                       +.   +.+.        .+|.-
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrldddde-----------------------gv---pssa--------lreic   53 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE-----------------------GV---PSSA--------LREIC   53 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCC-----------------------CC---cHHH--------HHHHH
Confidence            5799999999999998  58999999776532111                       00   0111        12221


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHH---HHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY---LEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~---L~qI~~~GffHaD  453 (760)
                      .++.+    ++.+.|..-.+. ....+..||.|||+- .|..+...-...+|+. +++..+-..   +...|.+++.|+|
T Consensus        54 llkel----khknivrl~dvl-hsdkkltlvfe~cdq-dlkkyfdslng~~d~~-~~rsfmlqllrgl~fchshnvlhrd  126 (292)
T KOG0662|consen   54 LLKEL----KHKNIVRLHDVL-HSDKKLTLVFEFCDQ-DLKKYFDSLNGDLDPE-IVRSFMLQLLRGLGFCHSHNVLHRD  126 (292)
T ss_pred             HHHHh----hhcceeehhhhh-ccCceeEEeHHHhhH-HHHHHHHhcCCcCCHH-HHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            22222    122223333332 122456899999973 3333322222223433 222222112   3335789999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhh
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  484 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~  484 (760)
                      +||.|++|+.  +|.+++.|||+++-+.-..
T Consensus       127 lkpqnllin~--ngelkladfglarafgipv  155 (292)
T KOG0662|consen  127 LKPQNLLINR--NGELKLADFGLARAFGIPV  155 (292)
T ss_pred             CCcceEEecc--CCcEEecccchhhhcCCce
Confidence            9999999986  8999999999998765544

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.72  E-value=3.9e-08  Score=112.69  Aligned_cols=177  Identities=15%  Similarity=0.114  Sum_probs=110.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|-|.+|.||-|++  +....|||-..-    .-                        .+....+.+|+.-.-.--.+
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpe----kd------------------------sr~~QPLhEEIaLH~~LrHk  632 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPE----KD------------------------SREVQPLHEEIALHSTLRHK  632 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeeccc----cc------------------------chhhccHHHHHHHHHHHhhH
Confidence            4799999999999999  356778883211    10                        01112223333211111234


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCC--CHHHHH--HHHHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLG--RYAVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~--d~~~la--~~lv~~~L~qI~~~GffHa  452 (760)
                      |+.++-..+..+.             -.-+.||-++|++|+++....-..+  +...+.  ...+-.-|+++|+..++|+
T Consensus       633 NIVrYLGs~senG-------------f~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHR  699 (1226)
T KOG4279|consen  633 NIVRYLGSVSENG-------------FFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHR  699 (1226)
T ss_pred             hHHHHhhccCCCC-------------eEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeec
Confidence            5544433332221             2358899999999999875432222  222222  1223334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC--CCCCChHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL--VPTGDTTAVR  523 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~--~~~~D~~al~  523 (760)
                      |+|-.|+||+. -.|-+++.|||-++++..=.  -.    .-.+.++-.+|++++++-|.-  .+..|+++++
T Consensus       700 DIKGDNVLvNT-ySGvlKISDFGTsKRLAgin--P~----TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~G  765 (1226)
T KOG4279|consen  700 DIKGDNVLVNT-YSGVLKISDFGTSKRLAGIN--PC----TETFTGTLQYMAPEVIDQGPRGYGKAADIWSFG  765 (1226)
T ss_pred             cccCCcEEEee-ccceEEecccccchhhccCC--cc----ccccccchhhhChHhhccCCcCCCchhhhhhcc
Confidence            99999999985 46899999999998764211  11    122457788999999998753  3456777665

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.2e-08  Score=117.70  Aligned_cols=185  Identities=16%  Similarity=0.166  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +-+|.|.||.||.|+..       -+-||||..+-....+.                                   ...+
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~-----------------------------------~~dF  536 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQA-----------------------------------RQDF  536 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHH-----------------------------------HHHH
Confidence            46999999999999983       25699997655433322                                   2335


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-------cC------CCHHHHHHHH--
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LG------VDRKRLGRYA--  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-------~g------~d~~~la~~l--  436 (760)
                      ++||..+..|    .|.+-|++-.|.. ...+.++|.|||+-++|.+++....       .+      ++..++....  
T Consensus       537 ~REaeLla~l----~H~nIVrLlGVC~-~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~Q  611 (774)
T KOG1026|consen  537 RREAELLAEL----QHPNIVRLLGVCR-EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQ  611 (774)
T ss_pred             HHHHHHHHhc----cCCCeEEEEEEEc-cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHH
Confidence            6777766665    3333455544442 3467899999999999999764321       11      2333333332  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          437 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       437 v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~-~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                      +.+-+.+|-.+.|+|+||-.-|.||.+  +-.+++.||||++.+=..+-.... +.++     -...|.++.+..|..+.
T Consensus       612 IAaGM~YLs~~~FVHRDLATRNCLVge--~l~VKIsDfGLsRdiYssDYYk~~~~t~l-----PIRWMppEsIly~kFTt  684 (774)
T KOG1026|consen  612 IAAGMEYLSSHHFVHRDLATRNCLVGE--NLVVKISDFGLSRDIYSSDYYKVRGNTLL-----PIRWMPPESILYGKFTT  684 (774)
T ss_pred             HHHHHHHHHhCcccccchhhhhceecc--ceEEEecccccchhhhhhhhhcccCCcee-----eeecCCHHHhhcCcccc
Confidence            334467788999999999999999985  678999999999876433222111 1111     13567788888899999


Q ss_pred             CCChHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFL  530 (760)
Q Consensus       516 ~~D~~al~~~~~~~l  530 (760)
                      +.|+++++..+=+++
T Consensus       685 eSDVWs~GVvLWEIF  699 (774)
T KOG1026|consen  685 ESDVWSFGVVLWEIF  699 (774)
T ss_pred             hhhhhhhhhhhhhhh
Confidence            999999998765543

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=98.66  E-value=1e-07  Score=108.38  Aligned_cols=184  Identities=18%  Similarity=0.176  Sum_probs=122.7

Q ss_pred             cccccccccEEEEEEE----CCe--eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~--~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      ..||.|-||.||+|+.    +|+  -||||+-+.+....                                  . .+.+.
T Consensus       395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d----------------------------------~-tekfl  439 (974)
T KOG4257|consen  395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPD----------------------------------D-TEKFL  439 (974)
T ss_pred             HhhcCCcccceeeeEecccccCcceeeeeehhccCCChh----------------------------------h-HHHHH
Confidence            3699999999999998    244  58888765532211                                  1 23456


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~Gff  450 (760)
                      +||-.|+.|    .|..-|..-.+..  ..+.++|||.++=+.|..+...+...++...+...  .+...+.+++...|+
T Consensus       440 qEa~iMrnf----dHphIikLIGv~~--e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfV  513 (974)
T KOG4257|consen  440 QEASIMRNF----DHPHIIKLIGVCV--EQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFV  513 (974)
T ss_pred             HHHHHHHhC----CCcchhheeeeee--ccceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchh
Confidence            777666655    3333333333332  24569999999999999887666555554433322  233457788999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+-..||||..  ...++|.|||+.+.++++.-..-.     ...--...|+++-+..-..+...|++.|..-+-+++
T Consensus       514 HRDIAaRNiLVsS--p~CVKLaDFGLSR~~ed~~yYkaS-----~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl  586 (974)
T KOG4257|consen  514 HRDIAARNILVSS--PQCVKLADFGLSRYLEDDAYYKAS-----RGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEIL  586 (974)
T ss_pred             hhhhhhhheeecC--cceeeecccchhhhccccchhhcc-----ccccceeecCccccchhcccchhhHHHHHHHHHHHH
Confidence            9999999999985  568999999999999876432111     011234566777776666677778887776444443

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.66  E-value=4.9e-08  Score=111.50  Aligned_cols=192  Identities=18%  Similarity=0.139  Sum_probs=125.0

Q ss_pred             CCChhhhhcccCccccccccccEEEEEEE--CCeeEE---EEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccch
Q 004334          286 GAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVV---VKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (760)
Q Consensus       286 G~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VA---VKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l  360 (760)
                      +.++...|-.|++ -||.|++=.||||.+  +|-+||   ||+                   -.+.+.            
T Consensus        34 e~~p~gRy~k~~e-vLGrGafKtVYka~De~~giEVAWnqvk~-------------------~d~~q~------------   81 (632)
T KOG0584|consen   34 EKDPTGRYLKFDE-VLGRGAFKTVYKAFDEEEGIEVAWNQVKI-------------------RDVTQS------------   81 (632)
T ss_pred             ccCCCCceeehhh-hcccccceeeeeccccccchhhHHHHHhH-------------------HHhhcC------------
Confidence            4456666777764 699999999999998  476655   331                   011000            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCC--eEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH
Q 004334          361 VAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE  438 (760)
Q Consensus       361 ~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~--~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~  438 (760)
                          .+....+..|++.++-+    +|.+-|.+- -+|.-...  ..+++|.+.+++|..+..-. ...+.+.+ ..-++
T Consensus        82 ----~~~leR~~~Ev~lLKsL----~H~NIirfy-~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~-~~vn~kai-k~W~R  150 (632)
T KOG0584|consen   82 ----PEELERLYSEVHLLKSL----KHPNIIRFY-DSWVDTDNKTINFITELFTSGTLREYRKKH-RRVNIKAI-KSWCR  150 (632)
T ss_pred             ----hHHHHHHHHHHHHHccC----CCCceeeee-eheecCCCceeeeeeecccCCcHHHHHHHh-ccCCHHHH-HHHHH
Confidence                12234566777666643    333333332 34444443  58999999999999875321 12333322 11122


Q ss_pred             HH---HHHHHhC--CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          439 SY---LEQILSH--GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       439 ~~---L~qI~~~--GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      ..   |+.+|.+  -++|+|+|-.||||+. +.|.+++.|.|++..+....-        +-+-|+++.|+++|.+-++ 
T Consensus       151 QILkGL~yLHs~~PPIIHRDLKCDNIFinG-~~G~VKIGDLGLAtl~r~s~a--------ksvIGTPEFMAPEmYEE~Y-  220 (632)
T KOG0584|consen  151 QILKGLVYLHSQDPPIIHRDLKCDNIFVNG-NLGEVKIGDLGLATLLRKSHA--------KSVIGTPEFMAPEMYEENY-  220 (632)
T ss_pred             HHHHHhhhhhcCCCCccccccccceEEEcC-CcCceeecchhHHHHhhcccc--------ceeccCccccChHHHhhhc-
Confidence            22   4445554  4999999999999986 679999999999987755432        2246899999999999665 


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      .+.+|+++|+-=+-+|.
T Consensus       221 nE~VDVYaFGMCmLEMv  237 (632)
T KOG0584|consen  221 NELVDVYAFGMCMLEMV  237 (632)
T ss_pred             chhhhhhhhhHHHHHHH
Confidence            77889999986555444

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.65  E-value=1.3e-08  Score=106.08  Aligned_cols=142  Identities=21%  Similarity=0.347  Sum_probs=81.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH-HH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ-EA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~-EA  375 (760)
                      .-||.|+||.||+-.+  .|+..|||-.|-...+.   +.                        .++.-|....+.. +.
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~k---eq------------------------~rll~e~d~~mks~~c  122 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEK---EQ------------------------KRLLMEHDTVMKSSNC  122 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchH---HH------------------------HHHHHHHHHHHhhcCC
Confidence            4699999999999999  59999999776543211   10                        0111111111111 12


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhh----hhhcCCCHHHHHHHHHH--HHHHHHH-hCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS----LDELGVDRKRLGRYAVE--SYLEQIL-SHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~----l~~~g~d~~~la~~lv~--~~L~qI~-~~G  448 (760)
                      -|+.+|....           +  -.+..++.||.++ .+++.+-.    .....+...-++...+.  ..|..+- ...
T Consensus       123 p~IVkfyGa~-----------F--~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lk  188 (361)
T KOG1006|consen  123 PNIVKFYGAL-----------F--SEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELK  188 (361)
T ss_pred             cHHHHHhhhh-----------h--cCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhh
Confidence            2333332211           0  1245699999996 45544321    11111222222211111  1233333 568


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ++|+|+||.|||++.  .|.++|+|||++|++-+.
T Consensus       189 iIHRDvKPSNILldr--~G~vKLCDFGIcGqLv~S  221 (361)
T KOG1006|consen  189 IIHRDVKPSNILLDR--HGDVKLCDFGICGQLVDS  221 (361)
T ss_pred             hhhccCChhheEEec--CCCEeeecccchHhHHHH
Confidence            999999999999986  899999999999998654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-08  Score=117.02  Aligned_cols=175  Identities=22%  Similarity=0.247  Sum_probs=110.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-+|+|++|.||||+.  +|+.+|||+.+-...+.+..+                                    .+|.-
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~i------------------------------------qqei~   64 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGI------------------------------------QQEIG   64 (829)
T ss_pred             eeecCCcccchhhhcccccCchhhheeeeccCCcccccc------------------------------------cccee
Confidence            4699999999999999  699999999764332221111                                    01100


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc--CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~--~L~qI~~~GffHa  452 (760)
                      .+       ++..+-.||..+..|  ..+.+++||||.|+++.|+..... .+...+++...-+.  -++.+|..|=+||
T Consensus        65 ~~-------~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~Tg-plselqiayvcRetl~gl~ylhs~gk~hR  136 (829)
T KOG0576|consen   65 ML-------RDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQGLKYLHSQGKIHR  136 (829)
T ss_pred             ee-------ecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeeecc-cchhHHHHHHHhhhhccchhhhcCCcccc
Confidence            00       011111223323222  235699999999999999754321 12333444332222  2788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCChHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRT  525 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~---~~~~~D~~al~~~  525 (760)
                      |+|-+||++++  .|.+++.|||..++++...-..      --.-+.+..|++++..++.   .....|.+++...
T Consensus       137 diKGanilltd--~gDvklaDfgvsaqitati~Kr------ksfiGtpywmapEvaaverkggynqlcdiwa~git  204 (829)
T KOG0576|consen  137 DIKGANILLTD--EGDVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGIT  204 (829)
T ss_pred             cccccceeecc--cCceeecccCchhhhhhhhhhh------hcccCCccccchhHHHHHhcccccccccccccccc
Confidence            99999999997  8999999999999987542211      1124677777777666543   3445677776643

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.65  E-value=7.4e-07  Score=90.23  Aligned_cols=140  Identities=28%  Similarity=0.410  Sum_probs=82.5

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +|++.|..++||+...++..+++|+-++.                                      .....+.+|+..+
T Consensus         3 ~~l~~G~~n~~~~v~~~~~~~vlK~~~~~--------------------------------------~~~~~~~~e~~~~   44 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDGRYVLKFYRPP--------------------------------------DAAERLRREAAVL   44 (239)
T ss_dssp             EEEEESSSSEEEEEEETTSEEEEEEESSH--------------------------------------HHHHHHHHHHHHH
T ss_pred             ccCCCCCeeeEEEEEECCcEEEEEEeCCC--------------------------------------CCHHHHHHHHHHH
Confidence            68999999999999997689999997763                                      0112234566666


Q ss_pred             HHHHHhcCCCCceeeceeee-----ccCCCeEEEEeecCCCchhh------hh-----------hhhhc-----CCC--H
Q 004334          379 ELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINR------IQ-----------SLDEL-----GVD--R  429 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~-----e~st~~vLVME~ieG~~L~d------~~-----------~l~~~-----g~d--~  429 (760)
                      +.+.+.     .+.+|+++.     ......+++|+|++|.++.+      ..           .+...     +..  .
T Consensus        45 ~~l~~~-----~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~  119 (239)
T PF01636_consen   45 RQLAEH-----GIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWP  119 (239)
T ss_dssp             HHHHHT-----TSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHH
T ss_pred             HHHHhc-----CCCCceEEeecccccccccceEEEEEeccccccccccccccccccccchhhhhhccccccccccccccc
Confidence            666543     137888886     22234689999999998887      00           00011     000  0


Q ss_pred             --------H------------------HHHHHHHHHHHHHHH---hCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          430 --------K------------------RLGRYAVESYLEQIL---SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       430 --------~------------------~la~~lv~~~L~qI~---~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                              .                  .+...+++.+...+.   ..+++|+|+||+||++++ .++++.++||+.++.-
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~-~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  120 EWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDP-SDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEES-STTEEEE--GTT-EEE
T ss_pred             ccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEeccccccceeee-ccceeEEEecccceEC
Confidence                    0                  000001111122222   356999999999999983 3677889999998876


Q ss_pred             Ch
Q 004334          481 SP  482 (760)
Q Consensus       481 ~~  482 (760)
                      ++
T Consensus       199 ~~  200 (239)
T PF01636_consen  199 DP  200 (239)
T ss_dssp             ET
T ss_pred             CH
Confidence            54

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.61  E-value=2.6e-07  Score=94.55  Aligned_cols=106  Identities=21%  Similarity=0.250  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccC------CCeEEEEeecCCC-chhhhhhhh-hc-CCCHHHHHHHHHHHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYT------TPQILTMEYVPGI-KINRIQSLD-EL-GVDRKRLGRYAVESYL  441 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s------t~~vLVME~ieG~-~L~d~~~l~-~~-g~d~~~la~~lv~~~L  441 (760)
                      ..+|.+++.++.+     .+|.+|+++.-..      ...+|+||+++|. +|.++.... .. ......+... +..++
T Consensus        58 a~~E~~~~~~L~~-----~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~-l~~~i  131 (206)
T PF06293_consen   58 AKREWRNLQRLRE-----AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRA-LARLI  131 (206)
T ss_pred             HHHHHHHHHHHHH-----cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHH-HHHHH
Confidence            4678888888865     3467777764222      2348999999995 788765431 11 1122333333 44557


Q ss_pred             HHHHhCCccccCCCCCcEEEeccC-CCcEEEEeecceeccCh
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISP  482 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFG~v~~l~~  482 (760)
                      ..+|..|++|+|++|+|||+++.+ +.++.||||+-+..-..
T Consensus       132 ~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~~  173 (206)
T PF06293_consen  132 AKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRPS  173 (206)
T ss_pred             HHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCCC
Confidence            899999999999999999998621 12799999998876653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.57  E-value=6.5e-08  Score=102.67  Aligned_cols=135  Identities=15%  Similarity=0.175  Sum_probs=81.9

Q ss_pred             CCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC----CCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEE
Q 004334          387 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----VDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIA  460 (760)
Q Consensus       387 ~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g----~d~~~la~~lv~~--~L~qI~~~GffHaDpHPGNIL  460 (760)
                      +.+-+..-+|+-.+....+|+.||.|- .|..+.......    +.+.-+-..+.+.  -++.+|+.=++|+|+||.|||
T Consensus        86 h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIl  164 (438)
T KOG0666|consen   86 HPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANIL  164 (438)
T ss_pred             CCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEE
Confidence            333455555665555667899999985 455555433222    2222222222221  145567888999999999999


Q ss_pred             Eec--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH------HHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          461 VDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA------DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       461 V~~--~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~------~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |..  ++.|++++.|+|+++.+....+        -+...|+      ..+.+.++..--.++..|++++.=+..+++
T Consensus       165 vmgdgperG~VKIaDlGlaR~~~~plk--------pl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElL  234 (438)
T KOG0666|consen  165 VMGDGPERGRVKIADLGLARLFNNPLK--------PLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELL  234 (438)
T ss_pred             EeccCCccCeeEeecccHHHHhhcccc--------ccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHH
Confidence            984  1238999999999987654332        2222232      233344444455678889999886655554

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.56  E-value=1.6e-07  Score=102.12  Aligned_cols=180  Identities=13%  Similarity=0.143  Sum_probs=111.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-+|.|.||+|-.+..  .+..|||||.+.               +.+                      +.+.-.-|.+
T Consensus        95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik~---------------V~k----------------------YreAa~iEi~  137 (415)
T KOG0671|consen   95 DLLGEGTFGKVVECWDRETKEHVALKIIKN---------------VDK----------------------YREAALIEIE  137 (415)
T ss_pred             hhhcCCcccceEEEeecCCCceehHHHHHH---------------HHH----------------------HhhHHHHHHH
Confidence            4699999999999998  588999997543               111                      1111233455


Q ss_pred             HHHHHHHhcCC-CCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCH---HHHHHHHHHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKD-MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDR---KRLGRYAVESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~-~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~---~~la~~lv~~~L~qI~~~GffH  451 (760)
                      -++++.+.-.+ ......-.-+.+|-+..++|.|.+ |.++.|+..... ..+..   ..++..++++ +.-+|..+++|
T Consensus       138 vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~s-v~fLh~~kl~H  215 (415)
T KOG0671|consen  138 VLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLES-VAFLHDLKLTH  215 (415)
T ss_pred             HHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHH-HHHHHhcceee
Confidence            55565443211 122333334557888899999987 666777543211 11222   2334444443 56789999999


Q ss_pred             cCCCCCcEEEecc------------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          452 ADPHPGNIAVDDV------------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       452 aDpHPGNILV~~~------------------~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      .|+||.||++...                  ..-.|+++|||.+..-.+..        ..++.---..+.+.++.+|.-
T Consensus       216 TDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTRHYRAPEViLgLGwS  287 (415)
T KOG0671|consen  216 TDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTRHYRAPEVILGLGWS  287 (415)
T ss_pred             cCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc--------ceeeeccccCCchheeccCcC
Confidence            9999999998531                  01248999999998765543        122222223455677888985


Q ss_pred             CCCCChHHHHHHH
Q 004334          514 VPTGDTTAVRRTA  526 (760)
Q Consensus       514 ~~~~D~~al~~~~  526 (760)
                      . +.|+++++=++
T Consensus       288 ~-pCDvWSiGCIL  299 (415)
T KOG0671|consen  288 Q-PCDVWSIGCIL  299 (415)
T ss_pred             C-ccCceeeeeEE
Confidence            4 56999877443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.55  E-value=8.6e-07  Score=90.74  Aligned_cols=184  Identities=18%  Similarity=0.183  Sum_probs=111.9

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ..+|.|++|+||++... ..+++|+..+......                                 .....+.+|+.-+
T Consensus         6 ~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~---------------------------------~~~~~~~~e~~~~   51 (384)
T COG0515           6 RKLGEGSFGEVYLARDR-KLVALKVLAKKLESKS---------------------------------KEVERFLREIQIL   51 (384)
T ss_pred             EeecCCCCeEEEEEEec-cEEEEEeechhhccch---------------------------------hHHHHHHHHHHHH
Confidence            46889999999999998 8899998877433221                                 1112233444433


Q ss_pred             HHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHHHHH--HHHHHHHhCCcccc
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVE--SYLEQILSHGFFHA  452 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~lv~--~~L~qI~~~GffHa  452 (760)
                      ..+    .+.+  .+...+..+.  ...+++|++++|..+.++......  ............+  ..+..+|..|++|+
T Consensus        52 ~~~----~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hr  125 (384)
T COG0515          52 ASL----NHPP--NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHR  125 (384)
T ss_pred             HHc----cCCc--ceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            333    2221  2223322222  225999999999999965433221  2333322222222  22568999999999


Q ss_pred             CCCCCcEEEeccCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCChHHHHH
Q 004334          453 DPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAVRR  524 (760)
Q Consensus       453 DpHPGNILV~~~~~g-~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l---G~~~~~~D~~al~~  524 (760)
                      |++|.||+++.  .+ .++++|||++..+.................+...+++++....   .......|.+++..
T Consensus       126 d~kp~nil~~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~  199 (384)
T COG0515         126 DIKPENILLDR--DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGI  199 (384)
T ss_pred             CCCHHHeeecC--CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHH
Confidence            99999999985  55 7999999999866544321110011222345666777777765   45666778887663

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=3.8e-08  Score=101.84  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=100.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEec-----CCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQR-----PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqr-----Pgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      ..+|+|.||.|++|+.  .|+.||+|..-     -|....--..+++|.                             .+
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~-----------------------------~l   73 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQ-----------------------------LL   73 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHH-----------------------------Hh
Confidence            4699999999999998  58889988532     111111111111111                             11


Q ss_pred             HHH-HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHhC
Q 004334          372 YQE-AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILSH  447 (760)
Q Consensus       372 ~~E-A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~~  447 (760)
                      .+| ..|+-.+.+.++. +..       .+....+||+.+|+- .|.-+.......+....+   ...++ .-|..||+.
T Consensus        74 kHenv~nliEic~tk~T-p~~-------r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm-~GL~~iHr~  143 (376)
T KOG0669|consen   74 KHENVVNLIEICRTKAT-PTN-------RDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLM-NGLYYIHRN  143 (376)
T ss_pred             cchhHHHHHHHHhhccC-Ccc-------cccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHH-HHHHHHHHh
Confidence            122 2333333322221 111       123446999999974 222222212122233322   22222 336779999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhH---HHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR---EGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r---~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      .++|+|.||.|+||+.  +|.++|.|||+++.++....   ..|..-+..+..+.++.+    +.---..+..|++...=
T Consensus       144 kilHRDmKaaNvLIt~--dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEll----LG~r~yg~~iDiWgAgC  217 (376)
T KOG0669|consen  144 KILHRDMKAANVLITK--DGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELL----LGDREYGPPIDIWGAGC  217 (376)
T ss_pred             hHHhhcccHhhEEEcC--CceEEeeccccccceecccccCCCCcccceeeeecCCHHHh----hcccccCCcchhHhHHH
Confidence            9999999999999985  89999999999977654321   123333333333333322    22223356778876554


Q ss_pred             HH
Q 004334          525 TA  526 (760)
Q Consensus       525 ~~  526 (760)
                      ++
T Consensus       218 im  219 (376)
T KOG0669|consen  218 IM  219 (376)
T ss_pred             HH
Confidence            43

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.52  E-value=4.8e-07  Score=93.78  Aligned_cols=188  Identities=14%  Similarity=0.063  Sum_probs=112.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .-+|.|+|+-||....  +++.+|+|-..-.-    ..|++                                ...+|+.
T Consensus        27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~----~~~~e--------------------------------~~~rEid   70 (302)
T KOG2345|consen   27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHS----QEDIE--------------------------------EALREID   70 (302)
T ss_pred             eeecCCCceeeeeecccCcccchhhheeeccc----hHHHH--------------------------------HHHHHHH
Confidence            4699999999999986  78899988432211    11111                                2234555


Q ss_pred             HHHHHHHhcCCCCceeece----e--eeccCCCeEEEEeecCCCchhhhhhh-h--hcCCCHHHHHHHH--HHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPT----I--FWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~----v--y~e~st~~vLVME~ieG~~L~d~~~l-~--~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      |-++|.+     ++| ++-    +  ..+.+...+|+..|..-+++.|.... .  ..-++..++....  +-..++++|
T Consensus        71 ~~rkf~s-----~~v-l~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH  144 (302)
T KOG2345|consen   71 NHRKFNS-----PNV-LRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALH  144 (302)
T ss_pred             HHHhhCC-----cch-HHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHh
Confidence            5555422     110 000    0  01133456899998887778775432 2  2224555555543  444589999


Q ss_pred             hCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccChh--hHHHHHHHHH-HHhhcCHHHHHHHHHHc---CCCCCCC
Q 004334          446 SHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN--IREGLLEAFY-GIYEKDADKVLQAMVQM---GVLVPTG  517 (760)
Q Consensus       446 ~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~--~r~~l~~l~~-al~~~D~~~v~~~l~~l---G~~~~~~  517 (760)
                      +..  +.|+|+||+||++.+  ++.+++.|||.+...+-.  .+.....+-- +--+-+..+=++++...   ..+++.+
T Consensus       145 ~~~~~yAH~DiKP~NILls~--~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ert  222 (302)
T KOG2345|consen  145 EKEPPYAHRDIKPANILLSD--SGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERT  222 (302)
T ss_pred             ccCCcccccCCCcceeEecC--CCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCccccccc
Confidence            998  999999999999986  789999999999865432  2222221110 10111222334555442   4567788


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |+++++-.++.++
T Consensus       223 DIWSLGCtLYa~m  235 (302)
T KOG2345|consen  223 DIWSLGCTLYAMM  235 (302)
T ss_pred             chhhhhHHHHHHH
Confidence            9999997766553

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.49  E-value=6.4e-06  Score=85.79  Aligned_cols=164  Identities=23%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             ccccc-cccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAA-SLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       300 PIasa-SiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||..| |-++||+...++..++||+..+.-                                       ...+..|++.+
T Consensus         5 ~~~~g~~~~~v~~~~~~~~~~~vk~~~~~~---------------------------------------~~~~~~E~~~l   45 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNPGLYLKIAPSGP---------------------------------------TYELEREAERL   45 (244)
T ss_pred             ecCCCCCcCeEEEEcCCCCcEEEEecCCCc---------------------------------------ccchHHHHHHH
Confidence            45554 448999998877899999865521                                       01234577777


Q ss_pred             HHHHHhcCCCCceeeceeeeccCC--CeEEEEeecCCCchhhhhh-----------------hhhc-----CCCH---HH
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQS-----------------LDEL-----GVDR---KR  431 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st--~~vLVME~ieG~~L~d~~~-----------------l~~~-----g~d~---~~  431 (760)
                      ..+.+.      +.+|+++.....  ..+++|||++|.++.+...                 +...     ....   ..
T Consensus        46 ~~l~~~------~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~  119 (244)
T cd05150          46 RWLAGK------LPVPEVIDYGSDDGRAWLLTSAVPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRR  119 (244)
T ss_pred             HHHHhc------CCCCeEEEEEecCCccEEEEEeeCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHH
Confidence            766532      678998864433  4699999999998875320                 0000     0000   00


Q ss_pred             HHH--H-------------------HHHHHHHHHH-------hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          432 LGR--Y-------------------AVESYLEQIL-------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       432 la~--~-------------------lv~~~L~qI~-------~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      +..  .                   .....+..+.       ...++|+|+||+||++++  ++...+|||+.++.=++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~--~~~~~iIDwe~a~~gdp~  197 (244)
T cd05150         120 LAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEEDLVVTHGDACLPNIIVDP--GKFSGFIDLGRLGVADRY  197 (244)
T ss_pred             HHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCceEEECCCCCCccEEEeC--CcEEEEEEccccccccHH
Confidence            000  0                   0111122221       234899999999999985  555789999998865543


Q ss_pred             hHHHHHHHHHHHhh--cCHHHHHHHHHHcCC
Q 004334          484 IREGLLEAFYGIYE--KDADKVLQAMVQMGV  512 (760)
Q Consensus       484 ~r~~l~~l~~al~~--~D~~~v~~~l~~lG~  512 (760)
                      .  .++.++.....  ++.......+...|.
T Consensus       198 ~--Dla~~~~~~~~~~~~~~~~~~f~~~Y~~  226 (244)
T cd05150         198 Q--DLALAVRSLRENLGGEEYAARFLDRYGI  226 (244)
T ss_pred             H--HHHHHHHHhhhhcCChHHHHHHHHHcCC
Confidence            2  23333322222  134455555555554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.49  E-value=2.7e-07  Score=96.63  Aligned_cols=122  Identities=19%  Similarity=0.251  Sum_probs=76.4

Q ss_pred             CCCeEEEEeecCCCchhhhhhhhhcCCC-HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceec
Q 004334          401 TTPQILTMEYVPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       401 st~~vLVME~ieG~~L~d~~~l~~~g~d-~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~  479 (760)
                      +.--|.||||++-++|..-......|.. .+.++.. +...+..+|..+++|+|+|..||||-+.+.-+++|+|||....
T Consensus        94 ~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~q-l~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQ-LLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             CceEEEeeccCccchhhhhcCcccccHHHHHHHHHH-HHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccc
Confidence            3446899999999888764332222322 3344444 4455788999999999999999999765556999999999887


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHH
Q 004334          480 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       480 l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~  528 (760)
                      .+.....  .+   ....-.+..+.+.+.+-. ...|..|.++|+-.+..
T Consensus       173 ~g~tV~~--~~---~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~  217 (378)
T KOG1345|consen  173 VGTTVKY--LE---YVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFY  217 (378)
T ss_pred             cCceehh--hh---hhcccCCcHHHhhccccceEecccccchheeeeeee
Confidence            6543221  11   111122223333332222 23567799988755433

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.47  E-value=8e-07  Score=92.54  Aligned_cols=137  Identities=18%  Similarity=0.222  Sum_probs=82.3

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+||++|.-+-||+.  .|..+++|+.+|+...                                      ..+.+|++.
T Consensus         6 ~~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~--------------------------------------~~i~~E~~~   45 (226)
T TIGR02172         6 WTQTGEGGNGESYTH--KTGKWMLKLYNPGFDK--------------------------------------ETIKREFDA   45 (226)
T ss_pred             heeecCCCCcceeEe--cCCCEEEEeCCCCCCH--------------------------------------HHHHHHHHH
Confidence            379999999999984  3667889988774311                                      123567777


Q ss_pred             HHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCc-hhhhh---------------h----hhhc---CCCHHHH
Q 004334          378 AELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIK-INRIQ---------------S----LDEL---GVDRKRL  432 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~-L~d~~---------------~----l~~~---g~d~~~l  432 (760)
                      +..+.+     ..+.+|+++.-  ......++|||++|.+ +.+..               .    +...   +......
T Consensus        46 l~~l~~-----~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~  120 (226)
T TIGR02172        46 SRKVFS-----LGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSY  120 (226)
T ss_pred             HHHHHH-----cCCCCCceEEEEecCCeeeeeeeecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence            777653     23678888753  4455688999999974 11110               0    1110   1010000


Q ss_pred             HH-----------------HHHHHHHHHH-HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          433 GR-----------------YAVESYLEQI-LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       433 a~-----------------~lv~~~L~qI-~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      ..                 ..+..++..+ -...++|+|+|||||++++  ++ +.+|||+.++.=++
T Consensus       121 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii~~~--~~-~~iIDwe~a~~Gdp  185 (226)
T TIGR02172       121 KEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLITSG--KG-TYWIDLGDFGYGNP  185 (226)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEEEcC--CC-cEEEechhcCcCCH
Confidence            00                 0011111111 0235789999999999985  55 99999998875444

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PRK10593 hypothetical protein; Provisional

Probab=98.47  E-value=6.6e-06  Score=89.12  Aligned_cols=93  Identities=20%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCc
Q 004334          276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG  355 (760)
Q Consensus       276 ~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~  355 (760)
                      .+.+.+.+.+|..+.      +.++|+.|.+++||+-...+..++||+.+....                          
T Consensus         3 ~~~~~~~~~~~~~~~------~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~--------------------------   50 (297)
T PRK10593          3 QLRAELSHLLGEKLS------RVECISEQPYAALWALYDSQGNPMPLMARSFST--------------------------   50 (297)
T ss_pred             HHHHHHHHHhchhhh------eeeecCCccceeEEEEEcCCCCEEEEEeccccc--------------------------
Confidence            455666666775332      237999999999999988544688898543100                          


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCch
Q 004334          356 AKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKI  416 (760)
Q Consensus       356 ~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L  416 (760)
                                  ...+..|+.+++.+++.    ..|.||+|+...     .+..+|||||++|.++
T Consensus        51 ------------~~~~~~Ea~~L~~L~~~----~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         51 ------------PGVAQQEAWKLSMLARS----GTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             ------------chHHHHHHHHHHHHccC----CCCCcCcEEEEeccCCcCCCeEEEEeccCCEec
Confidence                        01345788888887542    348999999522     3558999999999876

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.45  E-value=5.3e-08  Score=103.79  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccCCCcE
Q 004334          392 KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRL  469 (760)
Q Consensus       392 ~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~~g~l  469 (760)
                      ..|.-..+--.+.++|||++++ .+.++..   ...|-..+.....+  +..+.+|..|++|||+||.||++..  +..+
T Consensus        84 ftP~~~l~~~~e~y~v~e~m~~-nl~~vi~---~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~--~~~l  157 (369)
T KOG0665|consen   84 FTPQKTLEEFQEVYLVMELMDA-NLCQVIL---MELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNS--DCTL  157 (369)
T ss_pred             cCccccHHHHHhHHHHHHhhhh-HHHHHHH---HhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecc--hhhe
Confidence            3444333333556999999986 4444433   23454555444433  3368899999999999999999986  8899


Q ss_pred             EEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          470 IFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       470 ~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +++|||.+..-+..++.  .    -.+..-+..+.+..+.+| ..+.+|+++++=+..+++.
T Consensus       158 Ki~dfg~ar~e~~~~~m--t----pyVvtRyyrapevil~~~-~ke~vdiwSvGci~gEli~  212 (369)
T KOG0665|consen  158 KILDFGLARTEDTDFMM--T----PYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELIL  212 (369)
T ss_pred             eeccchhhcccCccccc--C----chhheeeccCchheeccC-CcccchhhhhhhHHHHHhh
Confidence            99999999877665321  1    112223445566777888 6778899998876666554

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.40  E-value=1.9e-06  Score=102.23  Aligned_cols=181  Identities=15%  Similarity=0.083  Sum_probs=115.2

Q ss_pred             ccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       300 PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ++|+|.||||++|.+.         ...||||..+....+.-.                                   +.
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~-----------------------------------~~  347 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEK-----------------------------------KD  347 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHHH-----------------------------------HH
Confidence            9999999999999972         247999987765443111                                   12


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRY  435 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~  435 (760)
                      +..|...|....+   |.+.+........ .+..++++||++.+.|.++.....               ..+....+...
T Consensus       348 ~~~El~~m~~~g~---H~niv~llG~~t~-~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsf  423 (609)
T KOG0200|consen  348 LMSELNVLKELGK---HPNIVNLLGACTQ-DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSF  423 (609)
T ss_pred             HHHHHHHHHHhcC---Ccchhhheeeecc-CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHH
Confidence            2333334443321   2222222222222 456899999999999998765444               11333444333


Q ss_pred             HH--HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcC-----HHHHHHHHH
Q 004334          436 AV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD-----ADKVLQAMV  508 (760)
Q Consensus       436 lv--~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D-----~~~v~~~l~  508 (760)
                      ..  ..-++.+....++|||+-.-|||+..  +..+++.|||+++...+..-..        ..++     ...|+++.+
T Consensus       424 a~QIa~GMe~L~~~~~vHRDLAaRNVLi~~--~~~~kIaDFGlar~~~~~~~y~--------~~~~~~~LP~kWmApEsl  493 (609)
T KOG0200|consen  424 AYQIANGMEYLASVPCVHRDLAARNVLITK--NKVIKIADFGLARDHYNKDYYR--------TKSSAGTLPVKWMAPESL  493 (609)
T ss_pred             HHHHHHHHHHHhhCCccchhhhhhhEEecC--CCEEEEccccceeccCCCCceE--------ecCCCCccceeecCHHHh
Confidence            33  33366677889999999999999985  6789999999999654432110        0111     225566666


Q ss_pred             HcCCCCCCCChHHHHHHHHHH
Q 004334          509 QMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       509 ~lG~~~~~~D~~al~~~~~~~  529 (760)
                      .-...+...|+++++..+.++
T Consensus       494 ~~~~ft~kSDVWSfGI~L~Ei  514 (609)
T KOG0200|consen  494 FDRVFTSKSDVWSFGILLWEI  514 (609)
T ss_pred             ccCcccccchhhHHHHHHHHH
Confidence            656677788999998765544

>PRK05231 homoserine kinase; Provisional

Probab=98.39  E-value=4.7e-06  Score=90.35  Aligned_cols=49  Identities=10%  Similarity=0.043  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHhCC-ChhhhhcccCccccccccccEEEEEEECCeeEEEEEec
Q 004334          270 PPFPSETAVSIVEEELGA-PLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR  325 (760)
Q Consensus       270 pp~p~~~v~~iie~elG~-~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqr  325 (760)
                      .+.+.+++..++ +.+|. .+.      +-++++.|...++|+...++..+++|+.+
T Consensus         5 t~ls~~~l~~~l-~~y~~~~~~------~~~~l~~G~~n~~y~v~t~~g~~vLK~~~   54 (319)
T PRK05231          5 TDVSDDELAAFL-APYDLGELL------SLKGIAEGIENSNFFLTTTQGEYVLTLFE   54 (319)
T ss_pred             ccCCHHHHHHHH-HhcCCchhh------ccchhccccccceEEEEeCCCcEEEEEec
Confidence            456677777777 55664 221      23689999999999998855578999864

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=6e-06  Score=90.36  Aligned_cols=186  Identities=18%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             ccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCC-ccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD-GAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~-~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .|.+|--+-||.|+- +|..+||||-+..|----.+|-        ++..-..... ..+.++..++.-++   ..|.+|
T Consensus       151 CiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdR--------YV~GEfRFRhgyck~NPRKMVk~WA---EKE~RN  219 (520)
T KOG2270|consen  151 CISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDR--------YVSGEFRFRHGYCKHNPRKMVKTWA---EKEMRN  219 (520)
T ss_pred             ccccCccceeEeeecCCCceEEEEEEeeeEEEEechhh--------hccceeeeecccccCCcHHHHHHHH---HHHHHH
Confidence            688899999999999 8999999998776532222221        1110000000 01223444444333   468999


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~---la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      +.+++.     .+|.+|+++  +-...||||+|+.+-... ...+....+.+..   +-..++...-.+....+++|+||
T Consensus       220 LkRl~~-----aGIP~PePI--lLk~hVLVM~FlGrdgw~-aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADL  291 (520)
T KOG2270|consen  220 LKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGRDGWA-APKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADL  291 (520)
T ss_pred             HHHHHh-----cCCCCCCce--eeecceEeeeeccCCCCc-CcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccch
Confidence            999953     457888877  567789999999643221 1112222233222   22222332223334789999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                      .--|+|+.   +|++.+||-+.+...+....-.|+       ..|...+-..+.++|+..
T Consensus       292 SEfN~Lyh---dG~lyiIDVSQSVE~DHP~aldFL-------RmDc~NVn~FF~r~gv~v  341 (520)
T KOG2270|consen  292 SEFNLLYH---DGKLYIIDVSQSVEHDHPHALDFL-------RMDCNNVNDFFRRLGVAV  341 (520)
T ss_pred             hhhhheEE---CCEEEEEEccccccCCChhHHHHH-------HHHHHHHHHHHHHcCCee
Confidence            99999997   799999999999888776544333       446777777888888643

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.26  E-value=1.4e-06  Score=99.10  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=113.9

Q ss_pred             cccccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..+|-|-+|.||.|.++  .-.||||..+-+..+                                 +.|    +..||.
T Consensus       273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe---------------------------------veE----FLkEAA  315 (1157)
T KOG4278|consen  273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---------------------------------VEE----FLKEAA  315 (1157)
T ss_pred             eccCCCcccceeeeeeeccceeeehhhhhhcchh---------------------------------HHH----HHHHHH
Confidence            47999999999999994  678999975542111                                 122    345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC-CCHHHH--HHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRL--GRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g-~d~~~l--a~~lv~~~L~qI~~~GffHaD  453 (760)
                      .|+.+.    +.+.|..-.|. ...-..|+++|||.-+.|-|++...... +..--+  +...+...+.++-..+|+|+|
T Consensus       316 vMKeik----HpNLVqLLGVC-T~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRD  390 (1157)
T KOG4278|consen  316 VMKEIK----HPNLVQLLGVC-THEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRD  390 (1157)
T ss_pred             HHHhhc----CccHHHHhhhh-ccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            666552    22223222221 1223569999999988888876432211 122112  222345567778889999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      +-..|-||.+  +.-+++.|||+++.++.++-.+-     |-..--...-+++-+......-..|+++|...+
T Consensus       391 LAARNCLVgE--nhiVKvADFGLsRlMtgDTYTAH-----AGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLL  456 (1157)
T KOG4278|consen  391 LAARNCLVGE--NHIVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLL  456 (1157)
T ss_pred             hhhhhccccc--cceEEeeccchhhhhcCCceecc-----cCccCcccccCcccccccccccchhhHHHHHHH
Confidence            9999999986  77899999999998877653221     212223344455555555556678999988654

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=98.22  E-value=2.1e-05  Score=88.58  Aligned_cols=87  Identities=22%  Similarity=0.238  Sum_probs=58.9

Q ss_pred             CccccccccccEEEEEEE-CC-eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARL-KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l-~G-~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.++++.|-+..||+..+ +| +.|+||...|-++..                   +      ..|.--.    .....|
T Consensus        30 ~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~-------------------g------~~wpl~~----eR~~~E   80 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVV-------------------G------ESWPLTL----DRARIE   80 (401)
T ss_pred             eeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccc-------------------c------ccccccH----HHHHHH
Confidence            447899999999999999 55 599999877642210                   0      0111000    123456


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCch
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  416 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L  416 (760)
                      ++.+..+.+.    ....+|+||.......++||||+++.++
T Consensus        81 ae~L~~l~~~----~p~~VPkV~~~D~~~~~lVME~L~~~~~  118 (401)
T PRK09550         81 AEALKIQAKY----VPDLVPKVYHYDEELAVTVMEDLSDHKI  118 (401)
T ss_pred             HHHHHHHHhh----CCCCCCeEEEECCCCCEEEEecCCCccH
Confidence            7777776543    2357999998777778999999998653

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.20  E-value=1.3e-05  Score=83.29  Aligned_cols=34  Identities=41%  Similarity=0.708  Sum_probs=27.0

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      .+++|+|+||+||++++  ++-..++||+.+..=++
T Consensus       164 ~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a~~gDp  197 (235)
T cd05155         164 PVWFHGDLAPGNLLVQD--GRLSAVIDFGCLGVGDP  197 (235)
T ss_pred             ceEEeCCCCCCcEEEEC--CCEEEEEeCcccCcCCh
Confidence            45899999999999973  33346999999876554

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.20  E-value=1.3e-05  Score=80.24  Aligned_cols=125  Identities=25%  Similarity=0.375  Sum_probs=88.5

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      .-+|-|..+-||.+.+.|.+||+|+||++-                                      ...++..||+.+
T Consensus        28 ~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds--------------------------------------~r~~l~kEakiL   69 (201)
T COG2112          28 KELAKGTTSVVYLGEWRGGEVALKVRRRDS--------------------------------------PRRNLEKEAKIL   69 (201)
T ss_pred             hhhhcccccEEEEeeccCceEEEEEecCCc--------------------------------------chhhHHHHHHHH
Confidence            458999999999999999999999999842                                      123566778777


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC-C-
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH-P-  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH-P-  456 (760)
                      +.....      -..|++|  +-++..+.|||++|.+|.++...    .+++.+...+=.+|  -+=..|+-|..+| | 
T Consensus        70 eil~g~------~~~p~vy--~yg~~~i~me~i~G~~L~~~~~~----~~rk~l~~vlE~a~--~LD~~GI~H~El~~~~  135 (201)
T COG2112          70 EILAGE------GVTPEVY--FYGEDFIRMEYIDGRPLGKLEIG----GDRKHLLRVLEKAY--KLDRLGIEHGELSRPW  135 (201)
T ss_pred             HHhhhc------CCCceEE--EechhhhhhhhhcCcchhhhhhc----ccHHHHHHHHHHHH--HHHHhccchhhhcCCc
Confidence            766432      2468888  33566777999999999876431    25555544333322  1335788898888 3 


Q ss_pred             CcEEEeccCCCcEEEEeeccee
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~  478 (760)
                      -||++.   ++++.+|||--+.
T Consensus       136 k~vlv~---~~~~~iIDFd~At  154 (201)
T COG2112         136 KNVLVN---DRDVYIIDFDSAT  154 (201)
T ss_pred             eeEEec---CCcEEEEEccchh
Confidence            366664   5699999998776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.19  E-value=1.1e-06  Score=107.22  Aligned_cols=128  Identities=6%  Similarity=-0.088  Sum_probs=77.7

Q ss_pred             CeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEec-----------------
Q 004334          403 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDD-----------------  463 (760)
Q Consensus       403 ~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~-----------------  463 (760)
                      ..+++|||++ .+|.++.......++...+...+  +-..+..+|..|++|+|+||.|||+..                 
T Consensus        54 ~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~  132 (793)
T PLN00181         54 SIVRALECED-VSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS  132 (793)
T ss_pred             hhhhhhccCC-ccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccc
Confidence            3578899874 48888764333334444443332  223478899999999999999999963                 


Q ss_pred             cCCCcEEEEeecceeccChhhHHHHHHH----------HHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          464 VNGGRLIFYDFGMMGSISPNIREGLLEA----------FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       464 ~~~g~l~LiDFG~v~~l~~~~r~~l~~l----------~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..++.+++.|||+++.........+...          ......+++.+++++++..+......|++++.-.+.+++.
T Consensus       133 ~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~  210 (793)
T PLN00181        133 DEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFC  210 (793)
T ss_pred             cccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhh
Confidence            1133455555555543221000000000          0011124556888988776667788999999988877764

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=98.16  E-value=5.5e-06  Score=89.41  Aligned_cols=162  Identities=21%  Similarity=0.297  Sum_probs=110.9

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||-|.-.-||.+-. +|++.++|+-|-|-     ..++.++.=-.++.+..      .-.|.-+-. +  .-.+|-+.
T Consensus        98 nqIGVGKESDIY~v~d~~G~~~~lK~HRLGR-----tSFR~Vk~kRDY~r~r~------~~sWlyLSR-l--aa~kEfaf  163 (465)
T KOG2268|consen   98 NQIGVGKESDIYVVADEEGNPLILKLHRLGR-----TSFRNVKNKRDYLRKRK------SGSWLYLSR-L--AATKEFAF  163 (465)
T ss_pred             cccccccccceEEEecCCCCchhHHHHhhhh-----hhHHHhhhhhhhHhcCC------ccchhhhHH-H--HHHHHHHH
Confidence            4688999999999999 69999999877652     12222222222222211      112433211 1  12356667


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPG  457 (760)
                      |+.+.+     ....||+++  .+++.++|||+++|.+|.++...    .++..+...++.. +.-+-.+|++|||-.--
T Consensus       164 mkaL~e-----~gfpVPkpi--D~~RH~Vvmelv~g~Pl~~v~~v----~d~~~ly~~lm~~-Iv~la~~GlIHgDFNEF  231 (465)
T KOG2268|consen  164 MKALYE-----RGFPVPKPI--DHNRHCVVMELVDGYPLRQVRHV----EDPPTLYDDLMGL-IVRLANHGLIHGDFNEF  231 (465)
T ss_pred             HHHHHH-----cCCCCCCcc--cccceeeHHHhhcccceeeeeec----CChHHHHHHHHHH-HHHHHHcCceecccchh
Confidence            777654     346899988  46789999999999999876433    3455565555543 44567899999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhHHHH
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIREGL  488 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r~~l  488 (760)
                      ||+|.+  ++++++|||-.+.+.+......|
T Consensus       232 Nimv~d--d~~i~vIDFPQmvS~sh~nA~~Y  260 (465)
T KOG2268|consen  232 NIMVKD--DDKIVVIDFPQMVSTSHPNAEYY  260 (465)
T ss_pred             eeEEec--CCCEEEeechHhhccCCCcccee
Confidence            999986  88999999999988887655443

>PLN02756 S-methyl-5-thioribose kinase

Probab=98.14  E-value=4.6e-05  Score=85.78  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             CCCCCCHHHHHHHHHHH------hCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHH
Q 004334          268 QVPPFPSETAVSIVEEE------LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRV  341 (760)
Q Consensus       268 ~vpp~p~~~v~~iie~e------lG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~  341 (760)
                      ...+++.+.+..-+.+.      +|..    +.....+++|.|.+-.||+-...+..|+||...|.++..          
T Consensus         5 ~y~~l~~~~l~~yl~~~~~~~~~l~g~----~~~l~~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~v----------   70 (418)
T PLN02756          5 EFRPLDEKSLVEYIKATPALSSKIGND----LDDLKIKEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCI----------   70 (418)
T ss_pred             ccccCCHHHHHHHHHHccchhhhcCCC----CCCceEEEcCCCceeeEEEEEcCCccEEEEeCCccccCC----------
Confidence            34456666665555443      3321    122345789999999999988777789999888765311          


Q ss_pred             HHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCC
Q 004334          342 IAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  413 (760)
Q Consensus       342 la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG  413 (760)
                               +      -+|.--.    ..-..|++.+....+.    ..+.+|+||.-.....+++|||++|
T Consensus        71 ---------g------a~wpl~~----~R~~~Ea~aL~~~~~~----~p~~VPkVy~~ded~~vlvME~L~~  119 (418)
T PLN02756         71 ---------G------ESWPMTK----ERAYFEATALREHGRL----CPDHVPEVYHFDRTMALIGMRYLEP  119 (418)
T ss_pred             ---------C------ccccCCc----cHHHHHHHHHHHhhhc----CCCCCCeEEEECCCCCEEEEeecCC
Confidence                     0      0110000    0112345555555432    3368999997666778999999988

>PRK12396 5-methylribose kinase; Reviewed

Probab=98.05  E-value=4.6e-05  Score=85.40  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             CCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEEC--CeeEEEEEecCCchhhHHHHHHHHHHHHHH
Q 004334          268 QVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY  345 (760)
Q Consensus       268 ~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~--G~~VAVKVqrPgi~~~i~~DL~iL~~la~~  345 (760)
                      ...|+..+++..-+.+.+|. +..- +...-++||-|-..-||++.+.  ++.|+||--.|-++-               
T Consensus         6 ~y~~l~~~~v~~yl~~~l~~-~~~~-~~~~~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv---------------   68 (409)
T PRK12396          6 KYFLMEANDVIVYVKEKLSK-FEHA-KGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARI---------------   68 (409)
T ss_pred             cceeCCHhHHHHHHHHhcCC-CCCc-ccceeeEcCCCceEEEEEEeeCCCCceEEEEeccHhhcc---------------
Confidence            44566666666666655551 1000 2233579999999999999984  678999976663220               


Q ss_pred             HhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCch
Q 004334          346 LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  416 (760)
Q Consensus       346 l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L  416 (760)
                          .       .+|.--.    +..+-|+..++.+.+...    -.+|++|.......++|||+++...+
T Consensus        69 ----~-------~swpL~~----~R~~~E~~aL~~~~~~~P----~~VP~vy~~D~e~~~~vMEdL~~~~i  120 (409)
T PRK12396         69 ----S-------DEFKLST----NRIRIESDVLQLEEELAP----GLVPKVYLFDSVMNCCVMEDLSDHTI  120 (409)
T ss_pred             ----C-------CCCCCCh----HHHHHHHHHHHHHHhhCC----CcCCeEEEECcHHhhHHHHhCcccHH
Confidence                0       0111101    123456677776655432    24999998777778999999976443

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=98.05  E-value=2.8e-05  Score=83.27  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      .+++|+|+||+||++++  ++.+.++||+.++.=
T Consensus       175 ~~l~HgD~~~~Nil~~~--~~~~~iIDfe~a~~g  206 (296)
T cd05153         175 RGVIHADLFRDNVLFDG--DELSGVIDFYFACTD  206 (296)
T ss_pred             CcCCccCcCcccEEEeC--CceEEEeehhhhcCc
Confidence            58999999999999984  555689999988764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=98.01  E-value=0.00023  Score=74.95  Aligned_cols=138  Identities=20%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      .++..|-..++|+...+|+.+++|+..++.... .                                   -...+|.+++
T Consensus         2 ~~~~~G~tn~~y~~~~~~~~~vlR~~~~~~~~~-~-----------------------------------~~r~~E~~~l   45 (256)
T TIGR02721         2 QTLSGGLTNRSWRIEHPGISFVWRPQSPVCKAL-G-----------------------------------VDRQREYQIL   45 (256)
T ss_pred             CcCCCcCcCCeEEEEeCCccEEEeeCCcccccc-c-----------------------------------CcHHHHHHHH
Confidence            367778888999998888899999755531110 0                                   0013455566


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhh--------hh-------hhhc---C--CCHH-HHHHH--
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI--------QS-------LDEL---G--VDRK-RLGRY--  435 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~--------~~-------l~~~---g--~d~~-~la~~--  435 (760)
                      ..+.+.     .+ .|+++..  ...+++|||++|.+++.-        ..       +...   +  .+.. .+...  
T Consensus        46 ~~l~~~-----g~-~P~~i~~--~~~~~v~e~i~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~  117 (256)
T TIGR02721        46 QALSAL-----GL-APKPILV--NEHWLLVEWLEGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWL  117 (256)
T ss_pred             HHHHhc-----CC-CCceEEE--eCCEEEEEeccCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence            665431     12 5888754  346899999999887531        00       1111   1  1111 11110  


Q ss_pred             ---------HHHHHHHHHH--------hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          436 ---------AVESYLEQIL--------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       436 ---------lv~~~L~qI~--------~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                               .+...++.+.        ...+.|+|+||+||++++  ++ +.+|||..++.=++.
T Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil~~~--~~-~~lIDwE~a~~gdp~  179 (256)
T TIGR02721       118 QIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLVVTP--QG-LKLIDWEYASDGDIA  179 (256)
T ss_pred             hcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcEEEeC--CC-CEEEeccccCcCCHH
Confidence                     0111122222        235899999999999985  44 899999999876654

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=97.93  E-value=4.8e-05  Score=82.22  Aligned_cols=94  Identities=21%  Similarity=0.332  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCC
Q 004334          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (760)
Q Consensus       274 ~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~  353 (760)
                      |..+.+.|.+.+|.+..-    -+.+|++.|++.++|+...+++.+-||+.......                       
T Consensus         2 w~~i~~~~~~~~~~~~~i----~~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~~~~-----------------------   54 (288)
T PF03881_consen    2 WQAIEQQISEQLGADFKI----TSIEPVSGGDINEAYRLDTDGGSYFVKVNSESGRD-----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHHTS---------EEEEE--SSSSEEEEEETTS-EEEEEEEEGGGCC-----------------------
T ss_pred             hHHHHHHHHHHhCCCCce----eeeEecCCCChhheEEEECCCccEEEEecChhhHH-----------------------
Confidence            567888999999976211    12379999999999999988999999997642222                       


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCC
Q 004334          354 DGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGI  414 (760)
Q Consensus       354 ~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~  414 (760)
                                      .+..|+..++.+++.    ..+.+|+|+.-  +.+..+|+|||++..
T Consensus        55 ----------------~f~~Ea~gL~~L~~~----~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   55 ----------------MFEGEAEGLKALAEA----NPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             ----------------HHHHHHHHHHHHCHT----TTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             ----------------HHHHHHHHHHHHHhc----CCCCCCeEEEEEeecCCceEEEEeecCC
Confidence                            234567777777442    34789998863  345679999999977

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06148 hypothetical protein; Provisional

Probab=97.92  E-value=0.0003  Score=88.20  Aligned_cols=55  Identities=18%  Similarity=0.427  Sum_probs=43.8

Q ss_pred             hhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE-CCeeEEEEEecCC
Q 004334          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (760)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l-~G~~VAVKVqrPg  327 (760)
                      +....|+++.+++.+++++.+|..-       +.+||++ ..-++|+... +|+.+++|+.+|+
T Consensus         4 ~~~~~p~~s~~~~~~~~~~~ygl~~-------~~~~L~s-~~d~nf~v~~~~g~~yVLKi~~~~   59 (1013)
T PRK06148          4 LSHPAPEFTTKDAEALLAQHFGISA-------TATPLDG-ERDLNFRLTTDDGADYILKIVNPS   59 (1013)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCce-------EEeecCC-cCCceEEEEeCCCCeEEEEEcCCc
Confidence            4456789999999999999999642       1257754 4688999988 6889999999985

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.86  E-value=0.00012  Score=79.00  Aligned_cols=164  Identities=19%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      ..+||.|+++-||++++  +|+++|||+-.-.- +.-..+.+.++.-.-....+.+.     .+..            +|
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~-~~~~~~~~~~~~e~l~~~~~~~~-----~~p~------------~a   78 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA-DASANEYEQLKEEQLAITLFPGV-----KNPK------------EA   78 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESS-TTHTTHHHHHHHHHHGGGGSTT-------SHH------------HH
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEeccc-ccchHHHHHHHHHHHHhhhhccC-----CCHH------------HH
Confidence            36899999999999999  68999999865322 22233444333322221111000     0111            11


Q ss_pred             HHHHHHHHhcCCCCceeec---eeeeccC-------CCeEEEEeecCCCchhhhhh-hhhcCCC---HHHHHHHHH----
Q 004334          376 ANAELFASNFKDMDYVKVP---TIFWEYT-------TPQILTMEYVPGIKINRIQS-LDELGVD---RKRLGRYAV----  437 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP---~vy~e~s-------t~~vLVME~ieG~~L~d~~~-l~~~g~d---~~~la~~lv----  437 (760)
                      ..-.+   .+...+-+.+|   ..+..-+       -..++.|.-+.+ +|.++.. +......   ....++..+    
T Consensus        79 ~~~~r---~l~P~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~-dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~  154 (288)
T PF14531_consen   79 YRHLR---FLVPLDLLRIPGKPPFFERGPGQSIYWVLNRFLLMPRAQG-DLQDLVEALFSRAQTHSPLAFAARLSLTVQM  154 (288)
T ss_dssp             HHHH----B---SEEEEETTS-SEEEECETTEEEEEESEEEEEE--SE-EHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred             HHhce---EEeeeEEEEEcCCCcceecCCCCccceeehhhhccchhhh-cHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence            11111   11122223332   1111111       034677777754 4555432 1111111   112222211    


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhH
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  485 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r  485 (760)
                      -.....+|..|++|+|++|.|++++.  +|.+.|.||+.+.+......
T Consensus       155 I~lvA~Lh~~GlVHgdi~~~nfll~~--~G~v~Lg~F~~~~r~g~~~~  200 (288)
T PF14531_consen  155 IRLVANLHSYGLVHGDIKPENFLLDQ--DGGVFLGDFSSLVRAGTRYR  200 (288)
T ss_dssp             HHHHHHHHHTTEEEST-SGGGEEE-T--TS-EEE--GGGEEETTEEEE
T ss_pred             HHHHHHHhhcceEecccceeeEEEcC--CCCEEEcChHHHeecCceee
Confidence            12356689999999999999999986  89999999999988766543

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.84  E-value=0.00017  Score=78.13  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccC
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      ..+++|+|+||+||++++  ++...++||+.++.=.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~--~~~~~vIDfd~~~~~~  219 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDG--DSVKGVIDFYFACTDA  219 (307)
T ss_pred             CCccCCCCCCcCcEEEEC--CceEEEeecccccCcc
Confidence            368999999999999985  5556899999887543

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK09902 hypothetical protein; Provisional

Probab=97.82  E-value=0.00043  Score=71.53  Aligned_cols=148  Identities=18%  Similarity=0.145  Sum_probs=96.3

Q ss_pred             ccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          295 RFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       295 ~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .+|+---+-|+.+.|++-.+.|+.+-||-|.-.+...+.               + |.  +            ..++.+|
T Consensus        20 wve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r---------------~-P~--g------------~ptf~rE   69 (216)
T PRK09902         20 WVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVR---------------Y-PF--G------------RPTIVRE   69 (216)
T ss_pred             eecCCCcCCCCcceEEEEEeCCcEEEEEeccCccccccc---------------C-CC--C------------chHHHHH
Confidence            344433556899999999988989999987543332200               0 11  0            1246678


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeecc------CCCeEEEEeecCC-Cchhhhhhhhhc---CCCHHHHHHHHHHHHHHHH
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPG-IKINRIQSLDEL---GVDRKRLGRYAVESYLEQI  444 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~------st~~vLVME~ieG-~~L~d~~~l~~~---g~d~~~la~~lv~~~L~qI  444 (760)
                      -.++.++.+.     +|.+|++...-      .-+.+||+|-++| .+|.++......   +...+.-.-..+...+.++
T Consensus        70 ~~~L~~L~~~-----GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~L  144 (216)
T PRK09902         70 VAVIKELERA-----GVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKM  144 (216)
T ss_pred             HHHHHHHHHc-----CCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence            8888888653     35577766221      1236999999987 477665422111   1122222333345568999


Q ss_pred             HhCCccccCCCCCcEEEeccCCCc--EEEEeecceec
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGS  479 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~--l~LiDFG~v~~  479 (760)
                      |..|+.|+||-|-||+++.  +|+  +.||||--++.
T Consensus       145 H~~Gv~Hgdly~khIll~~--~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        145 HSVNRQHGCCYVRHIYVKT--EGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHCCCcCCCCCHhheeecC--CCCeeEEEEEhhccch
Confidence            9999999999999999985  445  99999976554

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.80  E-value=0.00016  Score=81.32  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=79.7

Q ss_pred             hhhhhc---ccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHH
Q 004334          289 LDDVFE---RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (760)
Q Consensus       289 ~~~iF~---~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i  363 (760)
                      +.++|.   +.-...+|=|-|..||.|.+  ..+.||+||++-.-                                   
T Consensus        71 IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-----------------------------------  115 (590)
T KOG1290|consen   71 IGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-----------------------------------  115 (590)
T ss_pred             ccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh-----------------------------------
Confidence            456665   23346899999999999999  47899999998620                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-CCceeeceeeeccC------CCeEEEEeecCCCchhhhhhh-hhcCCCH---HHH
Q 004334          364 YDECASVLYQEAANAELFASNFKD-MDYVKVPTIFWEYT------TPQILTMEYVPGIKINRIQSL-DELGVDR---KRL  432 (760)
Q Consensus       364 ~~E~~~~l~~EA~nl~~f~~~~~~-~~~V~VP~vy~e~s------t~~vLVME~ieG~~L~d~~~l-~~~g~d~---~~l  432 (760)
                        .+.+.-..|.+.+.+++.--.+ ...=.|-+.+..+.      ...+||.|++ |..|-.++.- .-.|+..   ++|
T Consensus       116 --hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I  192 (590)
T KOG1290|consen  116 --HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEI  192 (590)
T ss_pred             --HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHH
Confidence              1111223344444444432211 11223344443331      2358888987 5555554322 2223332   333


Q ss_pred             HHHHHHHHHHHHH-hCCccccCCCCCcEEEec
Q 004334          433 GRYAVESYLEQIL-SHGFFHADPHPGNIAVDD  463 (760)
Q Consensus       433 a~~lv~~~L~qI~-~~GffHaDpHPGNILV~~  463 (760)
                      ++.++ ..|.++| +.|++|.|+||.|||+..
T Consensus       193 ~~qvL-~GLdYLH~ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  193 CRQVL-TGLDYLHRECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             HHHHH-HHHHHHHHhcCccccCCCcceeeeec
Confidence            33333 2367778 579999999999999863

>PRK06149 hypothetical protein; Provisional

Probab=97.69  E-value=0.00041  Score=86.73  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCC
Q 004334          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPG  327 (760)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPg  327 (760)
                      +..+....|.++.+++.+++++.+|..- +      ..++++..- ++|+.+.++..+++|+-+|+
T Consensus         7 ~~~~~~~~p~ls~~~~~~ll~~~ygl~~-~------~~~L~s~~d-~nf~v~t~~~~yVLKi~~~~   64 (972)
T PRK06149          7 IDRSSLPAPDVSEAQAERILAEHYGLSG-T------LTELGSQQD-RNFRVDSDGGRFVLKICHAA   64 (972)
T ss_pred             hccCCCCCCCCCHHHHHHHHHHhcCCce-E------EEecCCcCc-ceEEEEecCCcEEEEeCCcc
Confidence            3446667899999999999999998641 1      246665544 78988876567888999885

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.68  E-value=0.00047  Score=71.21  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      .++.|+|+||+||++++ .++.+.+|||-.++.-++
T Consensus       170 ~~l~H~Dl~~~Nil~~~-~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         170 IVFCHNDLLSGNIIYNE-EKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             EEEEcCCCCcCcEEEeC-CCCCEEEEEcccCCcCch
Confidence            36999999999999984 246799999998876554

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PLN02876 acyl-CoA dehydrogenase

Probab=97.67  E-value=0.00045  Score=84.96  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             CCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEEC-C---eeEEEEEecCCchhhHHHHHHHHHHHHHHH
Q 004334          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYL  346 (760)
Q Consensus       271 p~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~-G---~~VAVKVqrPgi~~~i~~DL~iL~~la~~l  346 (760)
                      +++.+.+..-+.+.++. +..-...+..++++.|....+|+-... |   ..+++|...|+....               
T Consensus        17 ~~d~~~l~~~l~~~~~~-~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~---------------   80 (822)
T PLN02876         17 RFDEDALLRYAAANVAG-FPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ---------------   80 (822)
T ss_pred             cCCHHHHHHHHHHhCCC-cCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc---------------
Confidence            35666666666655431 111111234578999999999998874 2   578888765542100               


Q ss_pred             hhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccC-----CCeEEEEeecCCCchh
Q 004334          347 QKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKIN  417 (760)
Q Consensus       347 ~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s-----t~~vLVME~ieG~~L~  417 (760)
                                          ....+.+|++.++.+..    ...+.+|++|....     +..++||||++|..+.
T Consensus        81 --------------------~~~~~~rE~~~l~~L~~----~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~~~  132 (822)
T PLN02876         81 --------------------SAHAVEREYQVLRALGE----HTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRIFV  132 (822)
T ss_pred             --------------------cHHHHHHHHHHHHHHhh----cCCCCCCcEEEEecCCCcCCCceEEEEecCCcccC
Confidence                                01124567777776642    24588999987433     3468999999998653

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.57  E-value=0.0031  Score=67.77  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=28.3

Q ss_pred             CccccCCCCCcEEEeccCCCc-EEEEeecceeccChh
Q 004334          448 GFFHADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPN  483 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~-l~LiDFG~v~~l~~~  483 (760)
                      .++|+|+||+||++++  +++ ..++||+.++.=++.
T Consensus       186 ~lvHGD~~~~Nilv~~--~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         186 VLVHGDLHPGHILIDE--DARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             eeEeCCCCCCcEEEeC--CCCEEEEECcHhcccCCHH
Confidence            4899999999999984  366 469999999877664

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.50  E-value=0.0011  Score=73.67  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             cccccccEEEEEEEC-C-eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          301 IAAASLGQVHRARLK-G-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       301 IasaSiGQVhrA~l~-G-~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      ||-|-..-||+.... | +.|+||--.|-++.                  . +.      +|.--.+    ...-|+..+
T Consensus         3 igdGnlN~VfrV~~~~g~~svIVKQAlp~vRv------------------~-g~------~wpl~~~----R~~~E~~~L   53 (370)
T TIGR01767         3 VGDGNLNLVFHVYDQEGDRAAIVKQALPYVRV------------------V-GE------SWPLTLD----RARIESSAL   53 (370)
T ss_pred             CCCCceEEEEEEEcCCCCeeEEEEEcCHHHhh------------------c-CC------CCCCCcc----HHHHHHHHH
Confidence            688999999999984 3 68999976663221                  0 00      1110011    123466666


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCch
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  416 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L  416 (760)
                      ....+..   | -.+|++|.......+++||+++...+
T Consensus        54 ~~~~~~~---P-~~vP~vy~~D~e~~~~vMEdL~~~~i   87 (370)
T TIGR01767        54 IRQGEHV---P-HLVPRIFHFDTEMAVTVMEDLSHHKI   87 (370)
T ss_pred             HHhhccC---c-cccCeEEEEccccceehHhhCccchH
Confidence            6554432   2 26999998777788999999966443

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=97.34  E-value=0.0009  Score=73.76  Aligned_cols=45  Identities=20%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCC-chhhHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPG-LKDLFDIDLKNLRVIAE  344 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPg-i~~~i~~DL~iL~~la~  344 (760)
                      .++++ +--.||+...++...++|+-+|+ ....+...+..|..++.
T Consensus        32 ~~l~s-~eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~   77 (331)
T COG2334          32 RGLNS-EENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAE   77 (331)
T ss_pred             ccccc-ccCceEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            56777 77889999995444499999998 44455555555555443

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.25  E-value=0.0055  Score=62.88  Aligned_cols=150  Identities=21%  Similarity=0.284  Sum_probs=91.1

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ..|||+|+-=-||.-- +....+|||.+|+....-.       ....+..++.|..             -.+...+|...
T Consensus         6 ~~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~~-------~~~~~~k~~~~~~-------------~~~~~~~E~~~   64 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERRR-------PFKRWLKRLRPKS-------------RYRQNRRELRY   64 (199)
T ss_pred             CcccccCCCceEEECC-CCCCeEEEEEccccccccc-------cchhHHHhhcccc-------------hhHHHHHHHHH
Confidence            4689999865555322 4567899999997511100       0111122221110             11223455555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCC--CeEEEEeecCC------CchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPG------IKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  449 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st--~~vLVME~ieG------~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~Gf  449 (760)
                      -..+.. -.+.....+|+.|....|  ..-+|+|.|..      .+|.++.  ...+++.  .....++.+.+.++.+++
T Consensus        65 y~~l~~-~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l--~~~~~~~--~~~~~L~~f~~~l~~~~I  139 (199)
T PF10707_consen   65 YKQLSL-RRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYL--KEGGLTE--ELRQALDEFKRYLLDHHI  139 (199)
T ss_pred             HHHHhh-ccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHH--HcCCccH--HHHHHHHHHHHHHHHcCC
Confidence            555542 345567789999875544  45789998742      2444443  2233443  445567788899999999


Q ss_pred             cccCCCCCcEEEeccCCC--cEEEEe
Q 004334          450 FHADPHPGNIAVDDVNGG--RLIFYD  473 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g--~l~LiD  473 (760)
                      +..|++|+||++....++  +++++|
T Consensus       140 v~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  140 VIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             eecCCCcccEEEEecCCCceEEEEEe
Confidence            999999999999864444  599999

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.21  E-value=0.0015  Score=70.23  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             CCccccCCCCCcEEEeccC---CCcEEEEeecceeccChh
Q 004334          447 HGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~---~g~l~LiDFG~v~~l~~~  483 (760)
                      .++.|+|+||+||++++ +   ++.+.||||..++.-++-
T Consensus       179 ~~lcH~Dl~~~Nil~~~-~~~~~~~i~lIDwEya~~~~p~  217 (302)
T cd05156         179 VVFCHNDLQEGNILLLN-PSSETKKLVLIDFEYASYNYRG  217 (302)
T ss_pred             ceEEecCCCcCeEEecC-CCCCCCcEEEEeeCCCCCCCcH
Confidence            46899999999999984 1   278999999999876553

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK11768 serine/threonine protein kinase; Provisional

Probab=97.06  E-value=0.0039  Score=68.47  Aligned_cols=31  Identities=29%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      ..|++|+|+|||||+++   + .+.++||+.++.=
T Consensus       195 ~~~liHgD~h~~NvL~~---d-~~~iIDFDd~~~g  225 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR---D-GPHFVDLDDARMG  225 (325)
T ss_pred             CccceecCCCchhcccc---C-CcEEEeCCCCCCC
Confidence            35789999999999994   3 4789999998843

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=96.98  E-value=0.0021  Score=62.72  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             chhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHH
Q 004334          415 KINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF  492 (760)
Q Consensus       415 ~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~  492 (760)
                      +|.++......+++...+...+.+  ..+..+|.+|      ||+||+++.  ++.+++  ||++...+....       
T Consensus         2 sL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~--~~~~~~--fG~~~~~~~~~~-------   64 (176)
T smart00750        2 SLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTW--DGLLKL--DGSVAFKTPEQS-------   64 (176)
T ss_pred             cHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcC--ccceee--ccceEeeccccC-------
Confidence            455554332333454444333222  3366777777      999999985  777887  999987765321       


Q ss_pred             HHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          493 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       493 ~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                          .++..+++++++..+..++..|+++++-.+++++.
T Consensus        65 ----~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt   99 (176)
T smart00750       65 ----RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALD   99 (176)
T ss_pred             ----CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHh
Confidence                35788899999887777888999999988877653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.96  E-value=0.003  Score=69.26  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ..++|+|.|+|||++++  ++.+.++||++++.=+|.
T Consensus       198 ~~lvHGD~~~gNlii~~--~~~~gVlDwe~~~lGDP~  232 (321)
T COG3173         198 PVLVHGDYRPGNLIIDP--GRPTGVLDWELATLGDPL  232 (321)
T ss_pred             ceeeeCCcccCCEEEeC--CCeeEEEeccccccCCcH
Confidence            46899999999999986  566999999999877764

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.95  E-value=0.00096  Score=77.33  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             CCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccC
Q 004334          388 MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVN  465 (760)
Q Consensus       388 ~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~  465 (760)
                      .+.+.-+....+..++.+++++|+.|+.+..-..... ..+....+...++  ..+.++|..|++|+|+||.||+++.  
T Consensus        56 ~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~-~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~--  132 (612)
T KOG0603|consen   56 TPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEV-MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLL--  132 (612)
T ss_pred             CCceeeeeeeeccccchhHhhhhcccchhhhccccCC-chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecc--
Confidence            4555556666667788999999999987654221111 1122222222333  2367789999999999999999986  


Q ss_pred             CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          466 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       466 ~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|.+++.|||..+..-+....          .++++++++++.. | .....|-+.+.....++
T Consensus       133 ~Ghi~~tdfglske~v~~~~~----------cgt~eymApEI~~-g-h~~a~D~ws~gvl~fel  184 (612)
T KOG0603|consen  133 EGHIKLTDFGLSKEAVKEKIA----------CGTYEYRAPEIIN-G-HLSAADWWSFGVLAFEL  184 (612)
T ss_pred             cCccccCCchhhhHhHhhhhc----------ccchhhhhhHhhh-c-cCCcccchhhhhhHHHH
Confidence            899999999998877655432          6799999999998 3 34567777766544333

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.015  Score=60.86  Aligned_cols=96  Identities=22%  Similarity=0.327  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCC
Q 004334          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (760)
Q Consensus       274 ~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~  353 (760)
                      |..+.+.+-+.+|..  ++   -+.+++..|.+-+.|+-.....++-||+...                           
T Consensus         2 w~~i~~qlse~~g~~--~i---~er~~v~gG~inea~~v~dg~~~~FvK~n~~---------------------------   49 (286)
T COG3001           2 WQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWRLRDGTDPFFVKCNQR---------------------------   49 (286)
T ss_pred             hHHHHHHHHHHhCch--hh---hcccccCCccccceeEeecCCcceEEEecch---------------------------
Confidence            567778888888865  22   1346788888877777777778999998543                           


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchh
Q 004334          354 DGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKIN  417 (760)
Q Consensus       354 ~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~  417 (760)
                                  +....+.-||..++.|++    ...|.||+|+..-+  +..+|||||++-.+++
T Consensus        50 ------------~~~~~f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          50 ------------EQLSMFTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             ------------hhHHHHHHHHHHHHHHHh----cCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence                        222334567778887764    34589999997555  4569999999987776

>PLN02236 choline kinase

Probab=96.86  E-value=0.013  Score=64.91  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      .+.|+|+||+||++++ .++.+.+|||..++.-++
T Consensus       201 ~~cH~Dl~~~Nil~~~-~~~~~~lID~Eya~~~~~  234 (344)
T PLN02236        201 GFCHNDLQYGNIMIDE-ETRAITIIDYEYASYNPV  234 (344)
T ss_pred             eEEeCCCCcCcEEEeC-CCCcEEEEeehhccccch
Confidence            6899999999999974 346899999999986655

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.72  E-value=0.001  Score=78.84  Aligned_cols=110  Identities=18%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             EeecCCCchhhhhhhh-hcC-CCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhH
Q 004334          408 MEYVPGIKINRIQSLD-ELG-VDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  485 (760)
Q Consensus       408 ME~ieG~~L~d~~~l~-~~g-~d~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r  485 (760)
                      ||||++ +|..+.... ... .+.......++ .-++.+|..|+-|+|+||.|+++..  +|.++++|||...-..-..-
T Consensus       400 mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~-~Gv~y~h~~GiahrdlK~enll~~~--~g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSNGKLTPLEADCFFKQLL-RGVKYLHSMGLAHRDLKLENLLVTE--NGILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             hhcccH-HHHHHHhcccccchhhhhHHHHHHH-HHHHHHHhcCceeccCccccEEEec--CCceEEeecCcceeeccCcc
Confidence            999999 887765322 111 11111222222 2247789999999999999999986  88999999998765533222


Q ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCChHHHH
Q 004334          486 EGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDTTAVR  523 (760)
Q Consensus       486 ~~l~~l~~al~~~D~~~v~~~l~~lG~~~-~~~D~~al~  523 (760)
                      .. .....++.-.++ +++++...-.... ...|+++..
T Consensus       476 ~~-~~~~~g~~gS~p-Y~apE~~~~~~ydpr~vDiwS~~  512 (601)
T KOG0590|consen  476 KN-IHESSGIVGSDP-YLAPEVLTGKEYDPRAVDVWSCG  512 (601)
T ss_pred             hh-hhhhcCcccCCc-CcCcccccccccCcchhhhhhcc
Confidence            21 122233333344 4445554443333 334666544

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.60  E-value=0.017  Score=63.67  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=29.0

Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      +.|.|++|+||++.+ .++++.||||..++.-++-
T Consensus       184 ~CHnDl~~~NiL~~~-~~~~l~lID~EYag~nd~~  217 (330)
T PLN02421        184 FAHNDLLSGNLMLNE-DEGKLYFIDFEYGSYSYRG  217 (330)
T ss_pred             EEECCCCcccEEEeC-CCCcEEEEcccccCCCccH
Confidence            799999999999974 3578999999999876653

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.00088  Score=76.30  Aligned_cols=124  Identities=17%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             eEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh----CCccccCCCCCcEEEeccCCCcEEEEeecceec
Q 004334          404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS----HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~----~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~  479 (760)
                      .++.|++|+-.+|.|+...+..+..+...   ++....+|+-.    .|++|+|++|.||+...  +.++++.|||++..
T Consensus       331 lyI~Mn~c~~~tledWl~rr~~~e~~s~s---~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~--d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  331 LYIQMNLCEKETLEDWLRRRRTGEERSLS---LMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSD--DDQLKIGDFGLVTS  405 (516)
T ss_pred             hhhhhhhhhhhhHHHHhhCCCcccccchh---HHHHHHHhhccchhhccchhhhcccccccccc--chhhhhhhhhheee
Confidence            58999999999999987544443332211   12222333322    89999999999999975  77999999999988


Q ss_pred             cChhh--HHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Q 004334          480 ISPNI--REGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE  534 (760)
Q Consensus       480 l~~~~--r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~~~~  534 (760)
                      .+...  .....+....  .+..-+|.++-+.-.......|.++++-.+.+++..|.
T Consensus       406 ~~~~~~~~~~~a~~t~~--~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~  460 (516)
T KOG1033|consen  406 QDKDETVAPAAASHTQQ--VGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFS  460 (516)
T ss_pred             cccCCcccchhhhhhhc--ccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhc
Confidence            86654  0011111111  23334444444444445667899999988887776553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.46  E-value=0.002  Score=78.81  Aligned_cols=47  Identities=23%  Similarity=0.269  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          429 RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       429 ~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                      .+.++=.++ ..+.|+|..|+.|||+|.+||||+.  -+-+.|.||..-+
T Consensus       122 KkWiaFQLL-~al~qcH~~gVcHGDIKsENILiTS--WNW~~LtDFAsFK  168 (1431)
T KOG1240|consen  122 KKWIAFQLL-KALSQCHKLGVCHGDIKSENILITS--WNWLYLTDFASFK  168 (1431)
T ss_pred             HHHHHHHHH-HHHHHHHHcCccccccccceEEEee--echhhhhcccccC
Confidence            344544444 3489999999999999999999985  5678888887643

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=96.10  E-value=0.0091  Score=66.24  Aligned_cols=124  Identities=15%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             eEEEEeecCCCchhhhhhhhhcCCC-HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCC--cEEEEeecceecc
Q 004334          404 QILTMEYVPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSI  480 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~~~g~d-~~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g--~l~LiDFG~v~~l  480 (760)
                      .+|||-..+ .+|.++........- ..-+...+++. ...+|.||+-|+|+|.+|||+.-++|+  .+++.|||++---
T Consensus       318 lylvMkrY~-~tLr~yl~~~~~s~r~~~~~laQlLEa-v~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd  395 (598)
T KOG4158|consen  318 LYLVMKRYR-QTLREYLWTRHRSYRTGRVILAQLLEA-VTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLAD  395 (598)
T ss_pred             EEEehhcch-hhHHHHHhcCCCchHHHHHHHHHHHHH-HHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeec
Confidence            488887654 244444322221111 11122222222 466899999999999999999643344  6999999988532


Q ss_pred             Chh-hHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCCCCChHHHHHHHHHHH
Q 004334          481 SPN-IREGLLEAFYGIYEKDADKVLQAMVQMG------VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       481 ~~~-~r~~l~~l~~al~~~D~~~v~~~l~~lG------~~~~~~D~~al~~~~~~~l  530 (760)
                      +.. .+-.|..--. -.-++...|++++...-      +--...|.++.....++++
T Consensus       396 ~~hGlqlpy~S~~V-d~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIf  451 (598)
T KOG4158|consen  396 DNHGLQLPYESDEV-DLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIF  451 (598)
T ss_pred             cccccccccccccc-cCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHh
Confidence            221 1111100000 01245566677665431      0012457777777666654

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.01  E-value=0.0054  Score=74.93  Aligned_cols=93  Identities=20%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceecc----ChhhHHHHHHHHH-----HHhhcCHHHHHHHHHH
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI----SPNIREGLLEAFY-----GIYEKDADKVLQAMVQ  509 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l----~~~~r~~l~~l~~-----al~~~D~~~v~~~l~~  509 (760)
                      ..++++|..|++|+|++|.|++|+.  -|.+++.|||+....    .....+.+++-+.     --+.+.+++++++++.
T Consensus       154 la~Eylh~ygivhrdlkpdnllIT~--mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVil  231 (1205)
T KOG0606|consen  154 LAVEYLHSYGIVHRDLKPDNLLITS--MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVIL  231 (1205)
T ss_pred             HHhHhhccCCeecCCCCCCcceeee--cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhh
Confidence            3478899999999999999999986  799999999987542    2222222222111     1124678888888887


Q ss_pred             cCCCCCCCChHHHHHHHHHHHHHH
Q 004334          510 MGVLVPTGDTTAVRRTAQFFLNSF  533 (760)
Q Consensus       510 lG~~~~~~D~~al~~~~~~~l~~~  533 (760)
                      +--....+|-+++.-+.++|+-..
T Consensus       232 rqgygkpvdwwamGiIlyeFLVgc  255 (1205)
T KOG0606|consen  232 RQGYGKPVDWWAMGIILYEFLVGC  255 (1205)
T ss_pred             hhccCCCccHHHHHHHHHHHheee
Confidence            755577889999998888776543

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=95.84  E-value=0.016  Score=61.67  Aligned_cols=29  Identities=31%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCC
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPg  327 (760)
                      .++..|+.+.|+.++. +|+++++|+..|+
T Consensus         8 ~~~~~g~~s~V~pv~~~dG~~avLKl~~p~   37 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRRADGTPAVLKLAPPH   37 (253)
T ss_pred             CCCCCCcceEEEEEEcCCCCeEEEEecCCc
Confidence            4678899999999998 8999999999885

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.26  E-value=0.17  Score=55.62  Aligned_cols=193  Identities=19%  Similarity=0.209  Sum_probs=106.6

Q ss_pred             hhcccCccccccccccEEEEEEE----CC--------eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccc
Q 004334          292 VFERFDVEPIAAASLGQVHRARL----KG--------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRD  359 (760)
Q Consensus       292 iF~~fd~~PIasaSiGQVhrA~l----~G--------~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~  359 (760)
                      +|+.++. .|+.|.-+.|..|.-    +|        +.+||||-+.-+.+--.+|-.|-- =.++-.++      .+.+
T Consensus       252 vle~i~G-iIsTGKEsvvlHAY~GS~E~~~qd~ql~ptecAIKvfKTTLnEFKnRd~YiKD-DfRFKDRF------SK~N  323 (531)
T KOG2269|consen  252 VLESIDG-IISTGKESVVLHAYAGSNEHGHQDPQLSPTECAIKVFKTTLNEFKNRDEYIKD-DFRFKDRF------SKQN  323 (531)
T ss_pred             hHHhhhh-hhhcCcceEEEEeccCcccccccCcccCchHHHHHHHHHHHHHHhhhhhhhcc-chhhhhhh------cccC
Confidence            3444432 577788788877733    12        457888765433322222211100 00011111      1223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh--cCCCHHHHHHHHH
Q 004334          360 WVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAV  437 (760)
Q Consensus       360 l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~--~g~d~~~la~~lv  437 (760)
                      ...|..-.+   .+|..|+.++.+.     ++.+|.|+  .-.+.||||.||.-..+.- ..+..  ..-+....+...+
T Consensus       324 pR~i~~mWA---EkEmhNL~RMq~~-----GlpcP~vV--~lkkhvLVMsFiGd~~~aA-PkLK~v~l~d~E~~~aY~q~  392 (531)
T KOG2269|consen  324 PRGILKMWA---EKEMHNLSRMQKH-----GLPCPQVV--KLKKHVLVMSFIGDQGLAA-PKLKNVELTDDERRNAYDQV  392 (531)
T ss_pred             cHHHHHHHH---HHHHHHHHHHHhc-----CCCCCcee--eeecceEEEEeecCCCCCC-ccccccccChHHHHHHHHHH
Confidence            334433332   3688999998753     46677766  3467899999985322211 00111  1112223333334


Q ss_pred             HHHHHH-HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          438 ESYLEQ-ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       438 ~~~L~q-I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      ...+.+ .++.-++|+|+.--|+|..   .|++.+||-..+...+..  ..+     -++.+|...+...+.+.|..
T Consensus       393 ~~~M~~lY~Ec~LVHADlSEyN~Lw~---~gKvw~IDVsQsvep~HP--~~L-----eFL~RDc~Ni~~FF~r~G~p  459 (531)
T KOG2269|consen  393 QSIMCRLYKECLLVHADLSEYNLLWT---PGKVWVIDVSQSVEPSHP--RSL-----EFLTRDCQNIITFFTRIGTP  459 (531)
T ss_pred             HHHHHHHHHhhheeecchhhhhheec---CCceEEEechhccCCCCc--chh-----HHHHHHHHHHHHHHHhcCCC
Confidence            444444 4578899999999999997   479999997766555433  222     12346777788888887763

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.10  E-value=0.016  Score=58.87  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=28.2

Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      -..|+|+||+||++++  +| +++|||+.++.-++.
T Consensus        78 ~p~H~D~~~~N~~~~~--~~-~~lIDwe~a~~gDp~  110 (188)
T PRK10271         78 APLHMDVHAGNLVHSA--SG-LRLIDWEYAGDGDIA  110 (188)
T ss_pred             eeecCCCCCccEEEEC--CC-EEEEeCCcccCCCHH
Confidence            4699999999999974  44 999999999987774

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=94.82  E-value=0.36  Score=49.90  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=23.5

Q ss_pred             cccccccc-cEEEEEEECCeeEEEEE
Q 004334          299 EPIAAASL-GQVHRARLKGEEVVVKV  323 (760)
Q Consensus       299 ~PIasaSi-GQVhrA~l~G~~VAVKV  323 (760)
                      +-+|.|+- |.|++++.+|+.+|+|+
T Consensus        43 efLg~g~~~~~V~kv~I~g~~YALKl   68 (207)
T PF13095_consen   43 EFLGHGSHDGYVFKVEIDGRIYALKL   68 (207)
T ss_pred             eecCCCCceeEEEEEEECCeEEEEEE
Confidence            46899999 99999999999999999

>PTZ00384 choline kinase; Provisional

Probab=94.65  E-value=0.33  Score=54.86  Aligned_cols=32  Identities=28%  Similarity=0.217  Sum_probs=26.2

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccC
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      ..+.|-|+++|||+..   ++.+.+|||=-++.=+
T Consensus       227 ~VfCHNDL~~gNIL~~---~~~l~lID~EYA~~n~  258 (383)
T PTZ00384        227 VLFCHNDLFFTNILDF---NQGIYFIDFDFAGFNY  258 (383)
T ss_pred             eeeeeccCCcccEEec---CCCEEEEEeccccCCc
Confidence            4789999999999975   5679999998776433

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=94.11  E-value=0.074  Score=59.17  Aligned_cols=132  Identities=13%  Similarity=0.050  Sum_probs=79.4

Q ss_pred             eeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-------CCCHHHHH--HHHHHHHHHHHHhCCccccCCCCCcEEEe
Q 004334          392 KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-------GVDRKRLG--RYAVESYLEQILSHGFFHADPHPGNIAVD  462 (760)
Q Consensus       392 ~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-------g~d~~~la--~~lv~~~L~qI~~~GffHaDpHPGNILV~  462 (760)
                      .|-.|--+.........-+..=+.|..+....+.       .+...++.  ...+...+..+|.+|++|.|+-..|-.|+
T Consensus       351 ~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvId  430 (563)
T KOG1024|consen  351 SVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVID  430 (563)
T ss_pred             ceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceeh
Confidence            3444433333334444555554556655443221       11122222  22344567889999999999999999998


Q ss_pred             ccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          463 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       463 ~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +  .-+++|.|=.+.+.+=|.+-+.+.+-    -++-...|..+.+.....+...|+++|+..+-++
T Consensus       431 d--~LqVkltDsaLSRDLFP~DYhcLGDn----EnRPvkWMslEal~n~~yssasDvWsfGVllWEL  491 (563)
T KOG1024|consen  431 D--QLQVKLTDSALSRDLFPGDYHCLGDN----ENRPVKWMSLEALQNSHYSSASDVWSFGVLLWEL  491 (563)
T ss_pred             h--heeEEeccchhccccCcccccccCCC----CCCcccccCHHHHhhhhhcchhhhHHHHHHHHHH
Confidence            6  67999999998887765543322110    0222345555555555667788999998765444

>PTZ00296 choline kinase; Provisional

Probab=93.31  E-value=1.3  Score=50.94  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=26.3

Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      .+.|.|+.++||+..   ++.+.||||=.++.-++
T Consensus       285 VfCHNDl~~~NiL~~---~~~l~LIDfEYAg~ndp  316 (442)
T PTZ00296        285 VFCHNDLQENNIINT---NKCLRLIDFEYSGYNFL  316 (442)
T ss_pred             eEEeCCCCccceeec---CCCEEEEeecccccccH
Confidence            589999999999875   45599999988876544

>COG4857 Predicted kinase [General function prediction only]

Probab=93.03  E-value=0.37  Score=51.87  Aligned_cols=49  Identities=20%  Similarity=0.421  Sum_probs=36.0

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEe--ecceeccChhhHHHHHHHHHHHhh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYD--FGMMGSISPNIREGLLEAFYGIYE  497 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiD--FG~v~~l~~~~r~~l~~l~~al~~  497 (760)
                      ..-++|+|+|.|.|++++   ...++||  |...|.+.-+.=.-+.+++..+..
T Consensus       227 aetLiHGDLHsGSIfvte---~etkvIDPEFaFYGPmafDiG~~iaNl~~~~~s  277 (408)
T COG4857         227 AETLIHGDLHSGSIFVTE---KETKVIDPEFAFYGPMAFDIGMLIANLWMSLFS  277 (408)
T ss_pred             hHHHhccccccCcEEeec---CcceeeCccccccCcchhhHHHHHHHHHHHHHh
Confidence            345899999999999984   4567777  777787776666666667665543

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=92.30  E-value=0.34  Score=49.19  Aligned_cols=86  Identities=22%  Similarity=0.296  Sum_probs=54.5

Q ss_pred             eeceeeeccCCCeEEEEeecCCCchhhh----hhh-hhcCCCHHHHHHHHHHHHHHHHHh---CCccccCCCCCcEEEec
Q 004334          392 KVPTIFWEYTTPQILTMEYVPGIKINRI----QSL-DELGVDRKRLGRYAVESYLEQILS---HGFFHADPHPGNIAVDD  463 (760)
Q Consensus       392 ~VP~vy~e~st~~vLVME~ieG~~L~d~----~~l-~~~g~d~~~la~~lv~~~L~qI~~---~GffHaDpHPGNILV~~  463 (760)
                      ++|+++. .|+ +++++||+..+++...    ... ...-..+..+|..+++. ++.+..   ..|+-+|.+|+|+-|++
T Consensus        21 ~~pk~lG-~CG-~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~-l~~l~~~~~~~~~lcDv~~~nfgv~~   97 (188)
T PF12260_consen   21 PFPKLLG-SCG-RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLEL-LEELDHGPLGFFYLCDVSPDNFGVND   97 (188)
T ss_pred             CCCCeee-ECC-CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHH-HHHHhcCCCCcEEEeecchHHeEEeC
Confidence            7899883 444 5779999997655321    111 11111234444444443 233332   34788999999999985


Q ss_pred             cCCCcEEEEeecceeccCh
Q 004334          464 VNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       464 ~~~g~l~LiDFG~v~~l~~  482 (760)
                        +|+++++|...+...+.
T Consensus        98 --~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   98 --DGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             --CCcEEEEechhcchhHH
Confidence              88999999998876644

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=92.11  E-value=0.1  Score=56.16  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=26.3

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceec
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  479 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~  479 (760)
                      ..|++|+|+|++||++++   +.+.++||+.+..
T Consensus       186 ~~~liHgD~~~~Nil~~~---~~i~lIDfd~~~~  216 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD---NEVYVIDFDYCTI  216 (313)
T ss_pred             cCceEcCCCCcccEEEeC---CcEEEEECccccc
Confidence            368999999999999973   5789999997654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=91.80  E-value=0.56  Score=52.44  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                      ..|=|+|+|-+||+++   +|+|.||||-+++
T Consensus       341 f~fehrnlt~~niLId---~GnvtLIDfklsR  369 (488)
T COG5072         341 FPFEHRNLTLDNILID---EGNVTLIDFKLSR  369 (488)
T ss_pred             CCcccccccccceeee---cCceEEEEeeeee
Confidence            4588999999999997   6999999999987

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=91.42  E-value=0.15  Score=51.90  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             hCCccccCCCCCcEEEeccCCC---cEEEEeecceeccChh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPN  483 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g---~l~LiDFG~v~~l~~~  483 (760)
                      ...+.|+|+|++||++...++|   .+.++||..++.-++.
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~  159 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPA  159 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChH
Confidence            3568999999999999752233   6999999999887764

subfamily of choline kinases

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=91.18  E-value=4.6  Score=46.18  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             ccccCCCCCcEEEeccCCCc---EEEEeecceeccCh
Q 004334          449 FFHADPHPGNIAVDDVNGGR---LIFYDFGMMGSISP  482 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~---l~LiDFG~v~~l~~  482 (760)
                      ++|+|+...|||++..++|+   -.||||=++..-++
T Consensus       270 L~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~vh~G~~  306 (414)
T PF07914_consen  270 LVHGDLWSSNILWDKDSDGKLKLKAIIDWQCVHRGSP  306 (414)
T ss_pred             eecCCccHHheeeecCCchhHHHHHHHHHHHhhcCch
Confidence            69999999999998644543   45788877665554

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=90.33  E-value=0.45  Score=50.94  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CccccCCCCCcEEEeccCCC---cEEEEeecceeccChh
Q 004334          448 GFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPN  483 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g---~l~LiDFG~v~~l~~~  483 (760)
                      -+.|||+|++|||+...++|   .++++||-+++.-++-
T Consensus       216 vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~p~  254 (294)
T PF02958_consen  216 VLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGSPA  254 (294)
T ss_pred             EEEcCccCHHhEeEccccccccccceeeccccccCCCcH
Confidence            37999999999999763344   7999999999877663

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=89.67  E-value=0.16  Score=51.77  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=22.9

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      ..+.|.|++|+||++.. .++++.||||-.++.=++
T Consensus       143 ~v~cHnDl~~~Nil~~~-~~~~~~lIDfEya~~n~~  177 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINN-KDGEVKLIDFEYAGYNDR  177 (211)
T ss_dssp             EEEE-S--SGGGEEETS-SSSCEEE--GTT-EEEEH
T ss_pred             ceEeeccCccccEEecc-CCCeEEEecHHHHhhccc
Confidence            45899999999999932 378999999998886543

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=88.54  E-value=0.3  Score=52.47  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=28.2

Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      -+.|+|++|+|++.++  .|++.||||=-++.=++
T Consensus       154 v~cH~Dl~~~N~l~t~--~~~l~LIDWEyAg~~D~  186 (269)
T COG0510         154 VPCHNDLNPGNLLLTD--KGGLFLIDWEYAGLNDP  186 (269)
T ss_pred             eeecCCCCccceEEcC--CCcEEEEecccCCCccH
Confidence            5899999999999984  69999999987775544

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.00  E-value=0.88  Score=53.09  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             eeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH---HHH----HHHHHHhCCccccCCCCCcEEEeccCC-Cc
Q 004334          397 FWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VES----YLEQILSHGFFHADPHPGNIAVDDVNG-GR  468 (760)
Q Consensus       397 y~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l---v~~----~L~qI~~~GffHaDpHPGNILV~~~~~-g~  468 (760)
                      .|+-++..++-+|.+. ..+..+......-. +.......   ...    .+..+|..+++|-|++|.||+...  + ..
T Consensus       186 ~~e~~~~lfiqtE~~~-~sl~~~~~~~~~~~-p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~--~~~s  261 (524)
T KOG0601|consen  186 AWEGSGILFIQTELCG-ESLQSYCHTPCNFL-PDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTS--DWTS  261 (524)
T ss_pred             ccccCCcceeeecccc-chhHHhhhcccccC-CchhhhhHHhhhhhcccccccccCCCcccccccchhheeccc--ccce
Confidence            4566777888888886 33443322111101 11111111   112    467789999999999999999975  5 67


Q ss_pred             EEEEeecceeccChhhHHHHHHHHHHHh-hcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          469 LIFYDFGMMGSISPNIREGLLEAFYGIY-EKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       469 l~LiDFG~v~~l~~~~r~~l~~l~~al~-~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      ..+.|||.+..+.+..-.......  .- .+|.-++++.+.+. ......|+.++..
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~--~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~e  315 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVS--KRPEGDCIYAAKELLNG-LATFASDIFSLGE  315 (524)
T ss_pred             eecCCcceeEEccCCccccceeee--ecCCCCceEeChhhhcc-ccchHhhhcchhh
Confidence            899999999999876532222111  11 46677777777653 3344556665554

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=84.27  E-value=0.54  Score=51.09  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=28.1

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      ..|++|+|++++|+++++  ++.+.++||-.+..=
T Consensus       195 ~~~lcHgD~~~~Nvl~~~--~~~~~iIDfd~~~~d  227 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDE--TRGGYFINFEKASFA  227 (309)
T ss_pred             ceeeeCCCCcHHhEEEcC--CCCEEEEEhhhcccC
Confidence            348999999999999975  778999999988643

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	760
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	6e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.7 bits (185), Expect = 4e-14
 Identities = 92/620 (14%), Positives = 183/620 (29%), Gaps = 182/620 (29%)

Query: 30  LSKQ-SLYRSF----LYKNYPRCNLGRRIRVAA-GKQDGSVVVEEKREPEFIKGLNDFEV 83
           LSKQ  + + F    L  NY    L   I+         + +  E+R+  +    ND +V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQV 125

Query: 84  NGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG---VAVEVVGQVEEEEKLNKEI 140
               + SR      +   +        V  ++G    G   VA++V    + + K++ +I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 141 ERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRA 200
                          F                 W   K  ++ +  LE+   +   +++ 
Sbjct: 185 ---------------F-----------------WLNLKNCNSPETVLEM---LQKLLYQI 209

Query: 201 WLN-----NQKFSYRGGMTEEKKVLRRKALAKWLKESILRL----GPTFIK---IGQQ-- 246
             N     +   + +  +   +  LRR   +K  +  +L L             +  +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 247 FSTR----VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV-FERFDVEPI 301
            +TR     D L+      +S L         +   S++ + L     D+  E     P 
Sbjct: 270 LTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 302 AAASLG---QVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR 358
             + +    +   A     +    V    L  + +  L  L          +P       
Sbjct: 329 RLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL----------EPA------ 369

Query: 359 DWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPT----IFW---EYTTPQILTME-- 409
           ++  ++D  +           +F  +        +PT    + W     +   ++  +  
Sbjct: 370 EYRKMFDRLS-----------VFPPS------AHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 410 --------------YVPGIKIN-RIQSLDELGVDRKRLGRYAVESYLEQ----------- 443
                          +P I +  +++  +E  + R  +  Y +    +            
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 444 ILSHGFFH---ADPHPGNIAVDDVNGGRLIFYDFGMMG------SISPNIREGLLEA--- 491
             SH   H    +        + +   R++F DF  +       S + N    +L     
Sbjct: 473 FYSHIGHHLKNIEHP------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 492 --FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQ 549
             FY  Y  D D   + +V                    FL   EE L    K  ++   
Sbjct: 527 LKFYKPYICDNDPKYERLV---------------NAILDFLPKIEENL-ICSKYTDLLRI 570

Query: 550 ELGFKKPLSKEEKIEKKKQR 569
            L  +     EE   K+ QR
Sbjct: 571 ALMAEDEAIFEEA-HKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 65/461 (14%), Positives = 122/461 (26%), Gaps = 168/461 (36%)

Query: 253 ILAQEYVDELSELQDQVPP----F------PSETAVSIVEEELGAPLDDVFERFDVEPIA 302
           IL++E +D +   +D V      F        E     VEE L      +      E   
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 303 AASLGQVH---RARLKGE-EVVVK--VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
            + + +++   R RL  + +V  K  V R             LR   + L ++ P     
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------YLKLR---QALLELRPA---- 150

Query: 357 KRDWVAIY--DECA-SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV-- 411
               V I        + +  +   +                 IFW       L ++    
Sbjct: 151 --KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-------KIFW-------LNLKNCNS 194

Query: 412 PGIKINRIQSL-------DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV-DD 463
           P   +  +Q L            D     +  + S ++  L      + P+   + V  +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRR-LLKSKPYENCLLVLLN 252

Query: 464 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 523
           V                +         AF        +      +   +L+ T       
Sbjct: 253 VQ---------------NAKA----WNAF--------N------LSCKILLTTRFKQVTD 279

Query: 524 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAAD 583
                FL+      AA      +    +      + +E             + LL     
Sbjct: 280 -----FLS------AATTTHISLDHHSMTL----TPDE------------VKSLLL---- 308

Query: 584 QPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAK--PYAMELLKFREAGVEVILKDF 641
                             LD   + L PR    E+    P  + ++          ++D 
Sbjct: 309 ----------------KYLDCRPQDL-PR----EVLTTNPRRLSIIAES-------IRDG 340

Query: 642 RNRWDRQTRAFYNLFRQADRVEKLAETIQR----LEQGDLK 678
              WD         ++  +  +KL   I+     LE  + +
Sbjct: 341 LATWDN--------WKHVN-CDKLTTIIESSLNVLEPAEYR 372

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 49/441 (11%), Positives = 113/441 (25%), Gaps = 138/441 (31%)

Query: 1   MASCSCSSSLALPELRF---LSPKAASR--------YHLSLSKQSLYRSFLYKNYPRCNL 49
           + +C+   ++     +    + P   SR          +   +  L R    K Y  C L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 50  GRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGS 109
                          V+   +  +       F ++      +   + +    V  + + +
Sbjct: 249 ---------------VLLNVQNAKAWNA---FNLS-----CKI-LLTTRFKQVTDFLSAA 284

Query: 110 LVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQE--KVEVS 167
              ++               +  +E     +  K           +     Q+  +  ++
Sbjct: 285 TTTHI-------SLDHHSMTLTPDEVK--SLLLK-----------YLDCRPQDLPREVLT 324

Query: 168 VAP-------------GGRWSRFKTY------STIQRTLEIWG-------FVLTFVFRA- 200
             P                W  +K        + I+ +L +         F    VF   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 201 -----------WLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFST 249
                      W +         M    K+ +   + K  KES + +   ++++  +   
Sbjct: 385 AHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 250 RVDI---LAQEY-VDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF------------ 293
              +   +   Y + +  +  D +PP                 LD  F            
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPP----------------YLDQYFYSHIGHHLKNIE 485

Query: 294 --ERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
             ER  +  +       +   +++ +          L  L    LK  +    Y+   DP
Sbjct: 486 HPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTL--QQLKFYK---PYICDNDP 539

Query: 352 KSDGAKRDWVAIYDECASVLY 372
           K +      +    +    L 
Sbjct: 540 KYERLVNAILDFLPKIEENLI 560

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} Length = 312

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 27/238 (11%), Positives = 71/238 (29%), Gaps = 20/238 (8%)

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLR 340
           + + L       +     E + +  + ++     + + V VK+     + +F  +   L 
Sbjct: 24  ISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLA 83

Query: 341 VIAEYLQKIDPK--SDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIF- 397
           ++A+      P     G  +    +  E  +    + ++  +FA     +  ++ P  + 
Sbjct: 84  LLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYG 143

Query: 398 WEY-----TTPQILTME--YVPGIKINRIQSLDELGVDR--KRLGRYAVESYLEQILSH- 447
            ++        Q    +  +      NRI    ++  ++         +   +   LS  
Sbjct: 144 LDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKH 203

Query: 448 ----GFFHADPHPGNIAVDD---VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEK 498
                  H +    N    D          ++          ++ E     FY  Y +
Sbjct: 204 NPKPSILHGNLWIENCIQVDDKIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQRYNE 261

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 27/211 (12%)

Query: 298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDID--LKNLRVIAE--YLQKIDPKS 353
            E I     G+V +       V +K+      DL +         ++ E    +++   S
Sbjct: 25  CEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLS 84

Query: 354 DGAKRDWVAIYDECASVLYQEAANAELFAS--NFKDMDYVKVPTIFWEYTTPQILTMEYV 411
                         +    Q +    L  +  ++            +       + +E+ 
Sbjct: 85  GEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFE 144

Query: 412 PGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL--------SHGFFHADPHPGNIAVDD 463
            G        +D   +  K       +S L Q+         S  F H D H GN+ +  
Sbjct: 145 FG-------GIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKK 197

Query: 464 VNGGRLIF------YDFGMMGSISPNIREGL 488
            +  +L +            G     I   L
Sbjct: 198 TSLKKLHYTLNGKSSTIPSCGLQVSIIDYTL 228

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 27/215 (12%)

Query: 270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPG 327
             +P     ++                   P+       V   R     E+  +KV   G
Sbjct: 43  TVWPQNAETTVDSLLSQGERKLKLVE----PLRVGDRSVVFLVRDVERLEDFALKVFTMG 98

Query: 328 LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKD 387
             +    +L+ L        ++  +S    RD   +     +V  Q        +    D
Sbjct: 99  -AENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDD 157

Query: 388 MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-- 445
                            +L M            +LD + V R   G  A+     Q++  
Sbjct: 158 YAVANY-----------LLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRL 206

Query: 446 -----SHGFFHADPHPGNIAVDDVNGGRLIFYDFG 475
                S G  H    P N+ +     GRL+  D  
Sbjct: 207 AANLQSKGLVHGHFTPDNLFIMP--DGRLMLGDVS 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	760
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.84
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.83
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.81
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.8
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.8
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.79
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.79
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.79
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.79
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.77
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.77
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.77
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.76
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.76
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.76
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.75
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.73
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.73
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.72
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.7
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.7
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.7
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.68
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.68
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.68
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.67
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.67
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.66
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.66
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.66
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.65
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.65
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.65
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.65
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.64
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.64
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.64
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.64
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.64
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.63
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.63
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.62
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.62
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.62
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.62
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.61
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.61
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.61
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.61
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.61
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.61
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.61
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.61
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.61
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.61
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.61
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.61
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.6
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.6
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.6
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.6
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.6
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.6
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.6
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.6
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.6
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.6
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.59
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.59
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.59
3niz_A	311	Rhodanese family protein; structural genomics, str	99.59
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.59
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.59
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.59
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.59
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.59
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.59
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.59
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.59
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.59
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.58
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.58
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.58
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.58
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.58
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.58
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.58
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.58
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.58
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.58
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.58
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.58
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.58
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.58
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.58
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.58
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.58
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.58
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.58
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.57
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.57
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.57
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.57
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.57
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.57
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.57
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.57
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.57
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.57
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.57
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.57
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.57
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.57
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.57
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.57
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.56
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.56
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.56
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.56
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.56
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.56
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.56
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.56
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.56
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.56
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.56
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.56
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.56
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.56
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.56
3bhy_A	283	Death-associated protein kinase 3; death associate	99.55
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.55
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.55
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.55
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.55
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.55
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.55
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.55
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.55
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.55
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.55
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.55
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.55
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.55
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.55
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.55
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.55
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.55
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.55
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.55
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.55
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.55
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.54
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.54
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.54
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.54
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.54
3uqc_A	286	Probable conserved transmembrane protein; structur	99.54
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.54
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.54
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.54
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.54
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.54
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.54
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.54
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.54
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.54
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.54
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.54
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.54
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.53
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.53
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.53
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.53
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.53
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.53
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.53
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.53
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.53
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.53
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.53
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.52
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.52
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.52
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.52
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.52
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.52
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.52
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.52
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.52
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.51
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.51
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.51
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.51
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.51
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.51
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.51
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.51
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.51
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.51
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.51
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.51
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.51
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.51
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.5
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.5
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.5
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.5
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.5
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.5
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.5
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.5
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.5
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.5
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.5
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.49
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.49
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.49
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.49
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.49
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.49
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.49
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.49
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.49
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.48
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.48
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.48
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.48
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.48
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.47
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.47
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.47
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.47
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.46
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.46
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.45
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.45
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.44
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.44
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.43
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.43
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.43
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.43
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.42
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.42
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.41
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.41
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.37
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.35
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.35
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.33
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.24
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.08
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.94
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.91
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.82
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.71
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.71
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.68
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.67
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.49
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.46
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.42
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	98.36
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.3
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	98.21
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	98.14
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	98.08
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	98.04
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.96
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.88
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.79
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.76
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.54
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.21
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.05
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.69
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	90.65
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	80.55

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=5.2e-26  Score=248.11  Aligned_cols=265  Identities=15%  Similarity=0.094  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHhCCeee-ehhhHhhcCcccCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCc----
Q 004334          224 ALAKWLKESILRLGPTFI-KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----  298 (760)
Q Consensus       224 ~~a~~lr~~l~~LGptfI-KlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~----  298 (760)
                      ..|+++.+.+.++++.++ +++|.+...++..+ +++.+++++||.+||.+++.+...++.+++.+....|..|..    
T Consensus        20 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   98 (365)
T 2y7j_A           20 RRARREIRHLPNLNREQRRAFIRSLRDDPSQSA-NLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDP   98 (365)
T ss_dssp             ---------------------------------------------------------------CBCHHHHHHHHHHHEEE
T ss_pred             HHHHHHHhcCccchhcccccccccccCCCchhH-HHHHHHHhhhhcCCCCccccccccCCchhhcccchhhhhhhhhccc
Confidence            358889999999999998 99999988877665 466789999999999999999999999999998888887765    


Q ss_pred             -cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 -EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 -~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                       ++||+|++|+||+|++  +|+.||||+++++.......|+                            .++...+.+|.
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~----------------------------~~~~~~~~~E~  150 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQL----------------------------EEVREATRRET  150 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHH----------------------------HHHHHHHHHHH
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHH----------------------------HHHHHHHHHHH
Confidence             8999999999999999  5999999999987544322221                            23444556677


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++.    ++++|..+..+++.++..+|||||++|++|.++... ...++...+...+  +-..+..+|.+|++|+|
T Consensus       151 ~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~D  225 (365)
T 2y7j_A          151 HILRQVA----GHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTE-KVALSEKETRSIMRSLLEAVSFLHANNIVHRD  225 (365)
T ss_dssp             HHHHHHT----TCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHHHhc----CCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            7776653    456677777777888899999999999999987642 2234444333222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCCCCChHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG------~~~~~~D~~al~~~~~  527 (760)
                      |||+||++++  +|+++|+|||+++.+++....       ....+++.++++++...+      ..+...|++++...+.
T Consensus       226 lkp~NIl~~~--~~~ikl~DfG~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~  296 (365)
T 2y7j_A          226 LKPENILLDD--NMQIRLSDFGFSCHLEPGEKL-------RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILF  296 (365)
T ss_dssp             CSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHH
T ss_pred             CCHHHEEECC--CCCEEEEecCcccccCCCccc-------ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHH
Confidence            9999999986  899999999999988764321       113467778888877633      3456789999998777


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       297 ell~  300 (365)
T 2y7j_A          297 TLLA  300 (365)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.84  E-value=1.6e-21  Score=224.57  Aligned_cols=243  Identities=15%  Similarity=0.112  Sum_probs=169.9

Q ss_pred             hhhHhhcCcccCCH----HHHHHHH---------------------hhhcCCCCCCHHHHHHH----HHHHhCCChhhhh
Q 004334          243 IGQQFSTRVDILAQ----EYVDELS---------------------ELQDQVPPFPSETAVSI----VEEELGAPLDDVF  293 (760)
Q Consensus       243 lGQ~lStR~DllP~----e~~~eL~---------------------~Lqd~vpp~p~~~v~~i----ie~elG~~~~~iF  293 (760)
                      +||+++|++|++|+    +.+++++                     ++||++|+++.+.+..+    .+..++...++++
T Consensus        72 ~~~f~~t~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~v~~v~~~~~~~l~~~~~~~~~  151 (543)
T 3c4z_A           72 FQQFLRTHEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVL  151 (543)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHTSTTCTTCCTTSCHHHHHHHHCC---CTTHHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHhhhhhhccCchhhHHHHHHHHHHHhhCchhhhhhccCCHHHHhhhhcCCCchhhHHHHHHHH
Confidence            49999999999999    8888888                     79999999999888777    3333333334444


Q ss_pred             cccCc----------------------------------cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHH
Q 004334          294 ERFDV----------------------------------EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLK  337 (760)
Q Consensus       294 ~~fd~----------------------------------~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~  337 (760)
                      ..++.                                  +.||.|++|+||+|+.  +|+.||||+.+.....       
T Consensus       152 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~-------  224 (543)
T 3c4z_A          152 AHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLK-------  224 (543)
T ss_dssp             HHHTTHHHHHHHTSHHHHHHHHHHHHHTSCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHH-------
T ss_pred             HhhhcCchHhhhhhhhhhhhhhhhhhhcccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhh-------
Confidence            43333                                  3499999999999999  5999999987541100       


Q ss_pred             HHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchh
Q 004334          338 NLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       338 iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~  417 (760)
                               ..                 +....+.+|.+.+.++     +++++.-...+.+..+..+|||||++|++|.
T Consensus       225 ---------~~-----------------~~~~~~~~E~~iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~  273 (543)
T 3c4z_A          225 ---------KR-----------------KGYQGAMVEKKILAKV-----HSRFIVSLAYAFETKTDLCLVMTIMNGGDIR  273 (543)
T ss_dssp             ---------HT-----------------TCHHHHHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCTTCBHH
T ss_pred             ---------hh-----------------HHHHHHHHHHHHHHhc-----CCCCEeeEEEEEeeCCEEEEEEEeccCCCHH
Confidence                     00                 0012344566666655     3344433333334556789999999999998


Q ss_pred             hhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHH
Q 004334          418 RIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF  492 (760)
Q Consensus       418 d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~  492 (760)
                      +.....   ...++...+...+  +-..+..+|..|++|+|+||+||+++.  +|.++|+|||++..+......      
T Consensus       274 ~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~--~g~vkL~DFGla~~~~~~~~~------  345 (543)
T 3c4z_A          274 YHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDD--DGNVRISDLGLAVELKAGQTK------  345 (543)
T ss_dssp             HHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT--TSCEEECCCTTCEECCTTCCC------
T ss_pred             HHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeC--CCCEEEeecceeeeccCCCcc------
Confidence            865322   1234444433222  334588899999999999999999985  899999999999987654211      


Q ss_pred             HHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          493 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       493 ~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .....+++.+++++++.....+...|++++...+++++.
T Consensus       346 ~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyellt  384 (543)
T 3c4z_A          346 TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA  384 (543)
T ss_dssp             BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHh
Confidence            011247888999998877666778899999988877764

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.83  E-value=2.2e-20  Score=204.05  Aligned_cols=186  Identities=14%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+..-..                                  .+....+.+|++
T Consensus        30 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~----------------------------------~~~~~~~~~E~~   75 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS----------------------------------SKEREESRREVA   75 (350)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEECTTSC----------------------------------HHHHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC----------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  5999999998653111                                  011234567888


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .|..-|.+-.++ +.....+||||||+|++|.++...... .++...+...+  +-..+..+|..|++|||
T Consensus        76 il~~l----~HpnIV~~~~~~-~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRD  150 (350)
T 4b9d_A           76 VLANM----KHPNIVQYRESF-EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRD  150 (350)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETT
T ss_pred             HHHHC----CCCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecc
Confidence            77766    233334444444 334567999999999999997643332 23433333222  23448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+|||++.  +|.++|+|||+++.++.....  .    ....+++.+++++++.-...++..|+++++-.+++++.
T Consensus       151 lKp~NILl~~--~g~vKl~DFGla~~~~~~~~~--~----~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemlt  220 (350)
T 4b9d_A          151 IKSQNIFLTK--DGTVQLGDFGIARVLNSTVEL--A----RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCT  220 (350)
T ss_dssp             CCGGGEEECT--TCCEEECSTTEESCCCHHHHH--H----HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEECC--CCCEEEcccccceeecCCccc--c----cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999985  899999999999998764321  1    12348999999999987666778899999988877764

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.81  E-value=1.5e-20  Score=202.32  Aligned_cols=188  Identities=16%  Similarity=0.192  Sum_probs=132.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|+.  +|+.||||+.....                ...                 .+....+.+|++
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~----------------~~~-----------------~~~~~~~~~E~~   84 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRH----------------IIK-----------------ENKVPYVTRERD   84 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHH----------------HHH-----------------TTCHHHHHHHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHH----------------CCC-----------------HHHHHHHHHHHH
Confidence            6899999999999998  69999999976410                000                 001123456766


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .|..-|.+-.++ +.....+||||||+|++|.++... ...++...+...+  +-..+..+|.+|++|||+
T Consensus        85 il~~l----~HpnIv~l~~~~-~~~~~~yivmEy~~gG~L~~~i~~-~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDl  158 (311)
T 4aw0_A           85 VMSRL----DHPFFVKLYFTF-QDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHGKGIIHRDL  158 (311)
T ss_dssp             HHTTC----CCTTBCCEEEEE-ECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhC----CCCCCCeEEEEE-EeCCEEEEEEecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCC
Confidence            66554    233334444444 334567999999999999987642 2234444333322  223488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++..+++.......    .-..+++.+++++++.-...+..+|+++++-.+++++.
T Consensus       159 KPeNILl~~--~g~vKl~DFGla~~~~~~~~~~~~----~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~  229 (311)
T 4aw0_A          159 KPENILLNE--DMHIQITDFGTAKVLSPESKQARA----NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA  229 (311)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECCTTTTCCCB----CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHeEEcC--CCCEEEEEcCCceecCCCCCcccc----cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999985  899999999999988754332111    11348999999999987667778899999988877764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.80  E-value=4.8e-20  Score=201.04  Aligned_cols=182  Identities=16%  Similarity=0.210  Sum_probs=132.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+....-..                            +        .+.+.+|++
T Consensus        80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~--------~~~~~~Ei~  123 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------R--------RELLFNEVV  123 (346)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----------------------------S--------GGGGHHHHH
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----------------------------H--------HHHHHHHHH
Confidence            4699999999999999  6999999987531000                            0        012345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .|..-|.+-.++ +..+..+||||||+|++|.++...  ..++...+...+.+  ..+..+|.+|++|||+
T Consensus       124 il~~l----~HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDl  196 (346)
T 4fih_A          124 IMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDI  196 (346)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEECCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccC
Confidence            66655    233334444444 335668999999999999987643  34555544443322  3488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++..++.....      ..-..+++.+++++++...-.++.+|+++++-.+++++.
T Consensus       197 Kp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~  265 (346)
T 4fih_A          197 KSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD  265 (346)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECCSSSCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEecCcCceecCCCCCc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999986  899999999999988654211      112358899999999987767888999999998887764

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.80  E-value=5.6e-20  Score=205.45  Aligned_cols=182  Identities=16%  Similarity=0.205  Sum_probs=133.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+....-..                            .        .+.+.+|+.
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~--------~~~~~~Ei~  200 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------R--------RELLFNEVV  200 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----------------------------S--------GGGHHHHHH
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----------------------------H--------HHHHHHHHH
Confidence            5799999999999999  5999999987542100                            0        012345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .|..-|.+-.++ ......+||||||+|++|.++...  ..++...+...+.  -..|..+|.+|++|||+
T Consensus       201 il~~l----~HpnIV~l~~~~-~~~~~~~iVmEy~~gG~L~~~i~~--~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDi  273 (423)
T 4fie_A          201 IMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDI  273 (423)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCCCceEEEE-EECCEEEEEEeCCCCCcHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHCCeecccC
Confidence            66655    233334444444 335667999999999999997643  3455555444333  23488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++..++.....      ..-..+++.+|+++++.-...++.+|+++++-.+++++.
T Consensus       274 Kp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~  342 (423)
T 4fie_A          274 KSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD  342 (423)
T ss_dssp             STTTEEECT--TCCEEECCCTTCEECCSSCCC------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcC--CCCEEEecCccceECCCCCcc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999986  899999999999988654211      112358899999999987777888999999988877764

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.79  E-value=1.6e-19  Score=190.95  Aligned_cols=184  Identities=15%  Similarity=0.188  Sum_probs=116.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 .+....+.+|++
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~~~~~~~Ei~   65 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK---------------------------------SDMQGRIEREIS   65 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC---------------------------------------CHHHHHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  69999999986632110                                 011234567777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .|..-|.+-.++ +..+..+|||||++ ++|.+.... ...++...+....  +-..++.+|.+|++|||+
T Consensus        66 il~~l----~HpnIv~~~~~~-~~~~~~~ivmEy~~-g~L~~~l~~-~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDi  138 (275)
T 3hyh_A           66 YLRLL----RHPHIIKLYDVI-KSKDEIIMVIEYAG-NELFDYIVQ-RDKMSEQEARRFFQQIISAVEYCHRHKIVHRDL  138 (275)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEEECCC-EEHHHHHHH-SCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHC----CCCCCCeEEEEE-EECCEEEEEEeCCC-CCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccccC
Confidence            77766    233334444444 34566799999995 567665432 2234444433332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++...++....       .-..+++.+++++++.-.. ..+.+|+++++-.+++++.
T Consensus       139 KP~NILl~~--~~~vkl~DFGla~~~~~~~~~-------~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~llt  207 (275)
T 3hyh_A          139 KPENLLLDE--HLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC  207 (275)
T ss_dssp             CTTTEEECT--TCCEEECCSSCC----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHH
T ss_pred             ChHHeEECC--CCCEEEeecCCCeecCCCCcc-------CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHH
Confidence            999999985  889999999999887654321       1234788999999986543 3567899999988877764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=192.83  Aligned_cols=186  Identities=14%  Similarity=0.127  Sum_probs=126.4

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||+|+||.||+|++++ .||||+.+..-..                                  .+..+.+.+|++.+
T Consensus        42 ~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~----------------------------------~~~~~~f~~E~~il   86 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKWHG-DVAVKILKVVDPT----------------------------------PEQFQAFRNEVAVL   86 (307)
T ss_dssp             EECCCCSSSEEEEEESSS-EEEEEECCCSSCC----------------------------------HHHHHHHHHHHHHH
T ss_pred             eEEeeCCCcEEEEEEECC-cEEEEEEEecCCC----------------------------------HHHHHHHHHHHHHH
Confidence            579999999999999876 4999997642110                                  11123456777777


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHP  456 (760)
                      .++    .|.+-|.+-.+.  .....+||||||+|++|.++.......++........  +...+..+|..|++|||+||
T Consensus        87 ~~l----~HpNIV~l~g~~--~~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp  160 (307)
T 3omv_A           87 RKT----RHVNILLFMGYM--TKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKS  160 (307)
T ss_dssp             TTC----CCTTBCCEEEEE--CSSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCS
T ss_pred             HhC----CCCCEeeEEEEE--ECCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCH
Confidence            655    233333333322  2345799999999999999765444445555444333  33458889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCChHHHHHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l---G~~~~~~D~~al~~~~~~~l~  531 (760)
                      .|||++.  ++.++|+|||++..++.......    .....+++.+|+++++..   +..+..+|++++.-.+.+++.
T Consensus       161 ~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt  232 (307)
T 3omv_A          161 NNIFLHE--GLTVKIGDFGLATVKSRWSGSQQ----VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT  232 (307)
T ss_dssp             SSEEEET--TEEEEECCCSSCBC----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHEEECC--CCcEEEeeccCceecccCCccee----ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH
Confidence            9999986  88999999999987765332211    122457899999999864   335567899999988877764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.79  E-value=1.5e-19  Score=193.16  Aligned_cols=221  Identities=15%  Similarity=0.126  Sum_probs=149.9

Q ss_pred             HHHHHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHH
Q 004334          259 VDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDL  336 (760)
Q Consensus       259 ~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL  336 (760)
                      -.....|.-..++++++++++.++..++.+....+-++. ++||+|++|+||+|++  +|+.||||+.++.....     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~-----   85 (321)
T 2c30_A           12 DLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSY-VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR-----   85 (321)
T ss_dssp             -------------CCHHHHHHHHHTTSCSSCHHHHEEEE-EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCS-----
T ss_pred             hhhccceeecCCcCcHHHHHHHHhhccCCCCchhhhhcc-EEeccCCCeEEEEEEECCCCcEEEEEEEeccchhH-----
Confidence            334455666778999999999999888876555443322 4899999999999998  59999999987643211     


Q ss_pred             HHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCch
Q 004334          337 KNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  416 (760)
Q Consensus       337 ~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L  416 (760)
                                                     ...+.+|+..+.++     +++++.-+.-+.......++||||++|++|
T Consensus        86 -------------------------------~~~~~~E~~~l~~l-----~h~niv~~~~~~~~~~~~~lv~e~~~~~~L  129 (321)
T 2c30_A           86 -------------------------------RELLFNEVVIMRDY-----QHFNVVEMYKSYLVGEELWVLMEFLQGGAL  129 (321)
T ss_dssp             -------------------------------HHHHHHHHHHHTTC-----CCTTBCCEEEEEEETTEEEEEECCCCSCBH
T ss_pred             -------------------------------HHHHHHHHHHHHhC-----CCCCcceEEEEEEECCEEEEEEecCCCCCH
Confidence                                           01234555555544     234443333344456778999999999999


Q ss_pred             hhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHH
Q 004334          417 NRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG  494 (760)
Q Consensus       417 ~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~a  494 (760)
                      .++..  ...++...+...+.+  ..+..+|..|++|+|+||+||+++.  +++++|+|||++..++......      .
T Consensus       130 ~~~l~--~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~------~  199 (321)
T 2c30_A          130 TDIVS--QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR------K  199 (321)
T ss_dssp             HHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECCSSSCCB------C
T ss_pred             HHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECC--CCcEEEeeeeeeeecccCcccc------c
Confidence            98754  334555554444333  3488899999999999999999985  7899999999998876532110      1


Q ss_pred             HhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          495 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       495 l~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ...+++.++++++...+..++..|++++...+.+++.
T Consensus       200 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~  236 (321)
T 2c30_A          200 SLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD  236 (321)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             cccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence            1246777888888877777778899999988776653

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.79  E-value=1.4e-19  Score=196.56  Aligned_cols=183  Identities=17%  Similarity=0.120  Sum_probs=124.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+.....                                         .+|+.
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----------------------------------------~~E~~  102 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----------------------------------------VEELV  102 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----------------------------------------THHHH
T ss_pred             cEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH-----------------------------------------HHHHH
Confidence            5699999999999998  5999999998652110                                         12333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.+    +.|..-|.+-.++ +.....+||||||+|++|.++.... ..++...+...+.  -..+..+|.+|++|||+
T Consensus       103 il~~----l~HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDl  176 (336)
T 4g3f_A          103 ACAG----LSSPRIVPLYGAV-REGPWVNIFMELLEGGSLGQLIKQM-GCLPEDRALYYLGQALEGLEYLHTRRILHGDV  176 (336)
T ss_dssp             TTTT----CCCTTBCCEEEEE-EETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCC
T ss_pred             HHHh----CCCCCCCcEEEEE-EECCEEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccc
Confidence            3332    2233334443433 2345579999999999999976432 2345444433332  23488899999999999


Q ss_pred             CCCcEEEeccCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g-~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +| +++|+|||++..+.+.....-. .....+.+++.+|+++++.-...+...|++++.-.+++++.
T Consensus       177 Kp~NILl~~--~g~~vKl~DFGla~~~~~~~~~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt  251 (336)
T 4g3f_A          177 KADNVLLSS--DGSRAALCDFGHALCLQPDGLGKSL-LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLN  251 (336)
T ss_dssp             CGGGEEECT--TSCCEEECCCTTCEEC-------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEeC--CCCEEEEeeCCCCeEccCCCcccce-ecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999985  65 6999999999988764321100 01112358999999999987767788899999988887764

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.77  E-value=6.6e-19  Score=188.24  Aligned_cols=191  Identities=14%  Similarity=0.077  Sum_probs=119.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|+.  +|+.||||+.+..-.+                                   ...+.+.+|++
T Consensus        11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-----------------------------------~~~~~~~~E~~   55 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRE-----------------------------------LAREKVMREVK   55 (299)
T ss_dssp             EEEEECC--EEEEEEETTTCCEEEEEEEEECSSH-----------------------------------HHHHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCH-----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  5999999986531110                                   11123456776


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCC-----------CeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHH--HHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTT-----------PQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY--AVESYL  441 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st-----------~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~--lv~~~L  441 (760)
                      .+.++    .|..-|.+-.++.+-.+           ..+||||||+|++|.++......  ..+...+...  .+-..+
T Consensus        56 il~~l----~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al  131 (299)
T 4g31_A           56 ALAKL----EHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAV  131 (299)
T ss_dssp             HHTTC----CCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHhC----CCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Confidence            66654    23333444444332221           14899999999999997643211  1122222221  123347


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH------HHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE------AFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~------l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                      ..+|..|++|||+||+|||++.  +|.++|+|||+++.++......-..      .-..-..+++.+++++++.-...++
T Consensus       132 ~ylH~~~IiHRDlKp~NILl~~--~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~  209 (299)
T 4g31_A          132 EFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSH  209 (299)
T ss_dssp             HHHHHTTCCCCCCCGGGEEECT--TCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCT
T ss_pred             HHHHHCcCccccCcHHHeEECC--CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCC
Confidence            8899999999999999999986  8899999999999887653322110      0011124788999999988776778


Q ss_pred             CCChHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFL  530 (760)
Q Consensus       516 ~~D~~al~~~~~~~l  530 (760)
                      .+|+++++-.+.+++
T Consensus       210 ~~DiwSlGvilyell  224 (299)
T 4g31_A          210 KVDIFSLGLILFELL  224 (299)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            889999998887765

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.77  E-value=4.4e-19  Score=190.47  Aligned_cols=186  Identities=13%  Similarity=0.138  Sum_probs=130.5

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||.||+|++       +|+.||||+.++.....                                   ..+.+
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~-----------------------------------~~~~f   76 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP-----------------------------------LREEF   76 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC------------------------------------CHHHH
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChH-----------------------------------HHHHH
Confidence            4699999999999997       36889999987632211                                   11235


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYA  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~l  436 (760)
                      .+|+..+.++    .|.+-|.+-.++ ......+||||||+|++|.++.....               ..++...+...+
T Consensus        77 ~~E~~il~~l----~HpNIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  151 (308)
T 4gt4_A           77 RHEAMLRARL----QHPNVVCLLGVV-TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLV  151 (308)
T ss_dssp             HHHHHHHHHC----CCTTBCCEEEEE-CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCCCcceEE-EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHH
Confidence            5677777665    233334443333 22456799999999999999764321               123444433332


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                        +...+..+|..+++|||+||.|||+++  ++.++|+|||+++.+........    ..-..+.+.+++++++.-+..+
T Consensus       152 ~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~~Ki~DFGlar~~~~~~~~~~----~~~~~gt~~ymAPE~l~~~~~s  225 (308)
T 4gt4_A          152 AQIAAGMEYLSSHHVVHKDLATRNVLVYD--KLNVKISDLGLFREVYAADYYKL----LGNSLLPIRWMAPEAIMYGKFS  225 (308)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCSCCBCGGGGGGCBCS----SSSSCBCGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCCCCCCccccceEECC--CCCEEECCcccceeccCCCceeE----ecccccCCcccCHHHHhCCCCC
Confidence              334588899999999999999999986  78999999999987755432111    1122467789999999888888


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      ...|+++++-.+.+++
T Consensus       226 ~ksDVwSfGvvl~El~  241 (308)
T 4gt4_A          226 IDSDIWSYGVVLWEVF  241 (308)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHH
Confidence            8899999998877665

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=189.00  Aligned_cols=185  Identities=16%  Similarity=0.107  Sum_probs=122.1

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||+||+|++       +|+.||||+.+..-.                                    +..+.+
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~------------------------------------~~~~~f   90 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE------------------------------------SARQDF   90 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSH------------------------------------HHHHHH
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCH------------------------------------HHHHHH
Confidence            5699999999999986       278999999865211                                    111235


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh--------------cCCCHHHHHHHH-
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------LGVDRKRLGRYA-  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~--------------~g~d~~~la~~l-  436 (760)
                      .+|++.+.++    .|.+-|.+-.++ ......+||||||+|++|.++.....              ..++...+.... 
T Consensus        91 ~~E~~il~~l----~HpnIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  165 (329)
T 4aoj_A           91 QREAELLTML----QHQHIVRFFGVC-TEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS  165 (329)
T ss_dssp             HHHHHHHTTC----CCTTBCCEEEEE-CSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCCcEEEEE-EECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHH
Confidence            5677776655    233334443333 23456799999999999999764221              123333333332 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          437 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       437 -v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                       +...+..+|..|++|||+||.|||++.  ++.++|+|||+++.+.........    .-..+.+.+++++++..+..+.
T Consensus       166 qia~gl~yLH~~~iiHRDLKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~~----~~~~gt~~ymAPE~~~~~~~~~  239 (329)
T 4aoj_A          166 QVAAGMVYLAGLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRVG----GRTMLPIRWMPPESILYRKFTT  239 (329)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEEET--TTEEEECCCC--------------------CCCCGGGCCHHHHTTCCCCH
T ss_pred             HHHHHHHHHhcCCeecccccHhhEEECC--CCcEEEcccccceeccCCCcceec----CcccccccccChhhhcCCCCCc
Confidence             334478899999999999999999986  889999999999887654332211    2234678899999998887888


Q ss_pred             CCChHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFL  530 (760)
Q Consensus       516 ~~D~~al~~~~~~~l  530 (760)
                      ..|++++.-.+.+++
T Consensus       240 ~sDvwS~Gvvl~Ell  254 (329)
T 4aoj_A          240 ESDVWSFGVVLWEIF  254 (329)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHH
Confidence            899999998877665

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.76  E-value=3.2e-19  Score=190.82  Aligned_cols=185  Identities=15%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||+||+|++       +|+.||||+.+..-.                                    +..+.+
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~------------------------------------~~~~~f   62 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD------------------------------------NARKDF   62 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCH------------------------------------HHHHHH
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCCh------------------------------------HHHHHH
Confidence            5799999999999986       278899999765311                                    112235


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh------------cCCCHHHHHHHH--H
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------------LGVDRKRLGRYA--V  437 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~------------~g~d~~~la~~l--v  437 (760)
                      .+|++.+.++    .|.+-|.+-.++ ......+||||||+|++|.++.....            ..++........  +
T Consensus        63 ~~E~~il~~l----~HpnIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  137 (299)
T 4asz_A           63 HREAELLTNL----QHEHIVKFYGVC-VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQI  137 (299)
T ss_dssp             HHHHHHHTTC----CCTTBCCEEEEE-CSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCccEEEEE-eeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHH
Confidence            6677776655    333334444433 23456799999999999999764321            123444333332  3


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  517 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~  517 (760)
                      ...+..+|.+|++|||+||.|||++.  ++.++|+|||+++.+........    .....+.+.+++++++..+..++..
T Consensus       138 a~gl~yLH~~~iiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~gt~~ymAPE~~~~~~~~~k~  211 (299)
T 4asz_A          138 AAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESIMYRKFTTES  211 (299)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCEEE----TTTEEECGGGCCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHhCCcccCccCHhhEEECC--CCcEEECCcccceecCCCCceee----cCceecChhhcCHHHHcCCCCCchh
Confidence            34478899999999999999999986  78999999999987655432110    0112367789999999888888889


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |++++.-.+.+++
T Consensus       212 DVwS~Gvvl~Ell  224 (299)
T 4asz_A          212 DVWSLGVVLWEIF  224 (299)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999998887765

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.76  E-value=1.7e-19  Score=193.52  Aligned_cols=185  Identities=17%  Similarity=0.166  Sum_probs=123.8

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|+||+||+|+.     +|+.||||+.+......                          .+..        .+.+
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~--------------------------~~~~--------~~~~   75 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV--------------------------RDRV--------RTKM   75 (304)
T ss_dssp             EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE--------------------------EECC------------
T ss_pred             EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh--------------------------HHHH--------HHHH
Confidence            6799999999999987     37899999987532111                          0000        1223


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |++.+.+    +.|..-|.+-.++ +..+..+||||||+|++|.++... ...++...+...+  +-..+..+|.+|++|
T Consensus        76 E~~il~~----l~HpnIv~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~ylH~~~IiH  149 (304)
T 3ubd_A           76 ERDILVE----VNHPFIVKLHYAF-QTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHLHSLGIIY  149 (304)
T ss_dssp             --CCCCC----CCCTTEECEEEEE-EETTEEEEEECCCTTCEEHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHH----CCCCCCCeEEEEE-EECCEEEEEEEcCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCCcC
Confidence            4333332    2232233333333 334667999999999999987642 2234444443332  223488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+|||++.  +|.++|+|||+++.+.+....      ..-..+++.+++++++.-...++.+|+++++-.+++++.
T Consensus       150 RDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt  221 (304)
T 3ubd_A          150 RDLKPENILLDE--EGHIKLTDFGLSKESIDHEKK------AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT  221 (304)
T ss_dssp             SSCCGGGEEECT--TSCEEEESSEEEEC-----CC------CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHeEEcC--CCCEEecccccceeccCCCcc------ccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHh
Confidence            999999999986  899999999999876543211      112358999999999988777888999999988877764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.76  E-value=6.9e-19  Score=187.52  Aligned_cols=189  Identities=14%  Similarity=0.054  Sum_probs=129.5

Q ss_pred             hcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          293 FERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       293 F~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      |-.|+ +.||.|+||.||+|+.  +|+.||||+.......                                  ......
T Consensus        27 ~~~~~-~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----------------------------------~~~~~~   71 (290)
T 3fpq_A           27 FLKFD-IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT----------------------------------KSERQR   71 (290)
T ss_dssp             EEEEE-EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------HHHHHH
T ss_pred             eEEee-eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC----------------------------------HHHHHH
Confidence            33344 3599999999999999  5899999987642110                                  011234


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      +.+|++.+.++    .|.+-|.+-.++....   ...+||||||+|++|.++... ...++...+...+  +-..+..+|
T Consensus        72 ~~~E~~il~~l----~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~ylH  146 (290)
T 3fpq_A           72 FKEEAEMLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGLQFLH  146 (290)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            56777777765    2333344444443221   235899999999999997642 2234444333222  234478899


Q ss_pred             hCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          446 SHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       446 ~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      .+|  ++|||+||+|||++. .+|.++|+|||++.........        -..+++.+++++++.- -.++.+|+++++
T Consensus       147 ~~~~~IiHRDlKp~NILl~~-~~g~vKl~DFGla~~~~~~~~~--------~~~GTp~YmAPE~~~~-~y~~~~DiwSlG  216 (290)
T 3fpq_A          147 TRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAK--------AVIGTPEFMAPEMYEE-KYDESVDVYAFG  216 (290)
T ss_dssp             TSSSCCCCCCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBE--------ESCSSCCCCCGGGGGT-CCCTHHHHHHHH
T ss_pred             HCCCCEEecccChhheeEEC-CCCCEEEEeCcCCEeCCCCccC--------CcccCccccCHHHcCC-CCCcHHHHHHHH
Confidence            999  999999999999974 3689999999999765443211        2358899999998864 467888999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      -.+++++.
T Consensus       217 vilyellt  224 (290)
T 3fpq_A          217 MCMLEMAT  224 (290)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877664

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.75  E-value=6.9e-19  Score=188.05  Aligned_cols=186  Identities=16%  Similarity=0.090  Sum_probs=119.9

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|+||.||+|+++|+.||||+.+..-...                                   +.  ...|...+
T Consensus         9 ~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~-----------------------------------~~--~e~Ei~~~   51 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREERS-----------------------------------WF--REAEIYQT   51 (303)
T ss_dssp             EEEEECSSSEEEEEEETTEEEEEEEECGGGHHH-----------------------------------HH--HHHHHHTS
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchhh-----------------------------------HH--HHHHHHHH
Confidence            579999999999999999999999876521100                                   00  01122211


Q ss_pred             HHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC------
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH------  447 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~------  447 (760)
                      .    .+.|.+-|.+-.++.+-.   ...+|||||++|++|.++...  .+.+.........  ...+..+|.+      
T Consensus        52 ~----~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~--~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~  125 (303)
T 3hmm_A           52 V----MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQG  125 (303)
T ss_dssp             T----TCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTC
T ss_pred             h----cCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            1    223333344444333221   246899999999999997643  3445444443332  3347788876      


Q ss_pred             --CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------CCCCCCh
Q 004334          448 --GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------LVPTGDT  519 (760)
Q Consensus       448 --GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~------~~~~~D~  519 (760)
                        |++|||+||.|||++.  ++.++|+|||+++.++........  ...-..+++.+++++++.-..      .++..|+
T Consensus       126 ~~~IiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~~--~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DV  201 (303)
T 3hmm_A          126 KPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTIDI--APNHRVGTKRYMAPEVLDDSINMKHFESFKRADI  201 (303)
T ss_dssp             BCCEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEESC--C-----CCGGGCCHHHHTTCSCTTCHHHHHHHHH
T ss_pred             CCCEeeccCCcccEEECC--CCCEEEEeCCCCccccCCCCceee--ecccccccccccCHHHhcccccccCCccChhHhh
Confidence              9999999999999986  899999999999876543211000  001124788999999886432      2345799


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      +++.-.+.+++.
T Consensus       202 wS~Gvvl~El~t  213 (303)
T 3hmm_A          202 YAMGLVFWEIAR  213 (303)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999988777654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.73  E-value=1.5e-18  Score=189.40  Aligned_cols=237  Identities=12%  Similarity=0.097  Sum_probs=148.9

Q ss_pred             hhcCcccCCHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHhCCChhhhh----------cccC-ccccccccccEEEEEEE
Q 004334          247 FSTRVDILAQEYVDELSELQ-DQVPPFPSETAVSIVEEELGAPLDDVF----------ERFD-VEPIAAASLGQVHRARL  314 (760)
Q Consensus       247 lStR~DllP~e~~~eL~~Lq-d~vpp~p~~~v~~iie~elG~~~~~iF----------~~fd-~~PIasaSiGQVhrA~l  314 (760)
                      -|+|.|++++++.+++..++ +.+++.+...+...+..++- +.+..+          ..|. .++||+|++|+||+|+.
T Consensus        16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~   94 (377)
T 3byv_A           16 FQGPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLW-NTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATD   94 (377)
T ss_dssp             -CCTTHHHHHHHHHHCGGGCCCSTTC-CHHHHHHHHHHHTC-C-CCEEEEEESSSCCCEEEEEEEEEEEETTEEEEEEEC
T ss_pred             CCCCchHHHHHHHHhCcccccccccccccchhhhhhHHHhc-CCCCcEEEEeecCCCCceEEEcceeecCCCEEEEEEEE
Confidence            37889999999999999999 99999999999988887662 223322          2232 37899999999999997


Q ss_pred             --CCeeEEEEEecCCch------hhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004334          315 --KGEEVVVKVQRPGLK------DLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFK  386 (760)
Q Consensus       315 --~G~~VAVKVqrPgi~------~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~  386 (760)
                        +|+.||||+.++...      +.+..++.+++.+    ..+         +               ..|+-++...+.
T Consensus        95 ~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l----~~l---------~---------------hpniv~~~~~~~  146 (377)
T 3byv_A           95 QETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL----RGI---------K---------------NQKQAKVHLRFI  146 (377)
T ss_dssp             -CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGS----TTC---------C---------------SHHHHHHHHCBC
T ss_pred             CCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhc----ccc---------C---------------CHHHHHHHhhhh
Confidence              599999999764311      1122222111110    000         0               012222221111


Q ss_pred             CCCceeeceeeeccC----------------CCeEEEEeecCCCchhhhhhhh-hcCCCH-----HH---HHHHHHHHHH
Q 004334          387 DMDYVKVPTIFWEYT----------------TPQILTMEYVPGIKINRIQSLD-ELGVDR-----KR---LGRYAVESYL  441 (760)
Q Consensus       387 ~~~~V~VP~vy~e~s----------------t~~vLVME~ieG~~L~d~~~l~-~~g~d~-----~~---la~~lv~~~L  441 (760)
                      ..     ..++..-.                ...+|||||++ ++|.++.... ....+.     ..   ++.. +-..+
T Consensus       147 ~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~q-i~~aL  219 (377)
T 3byv_A          147 FP-----FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQ-VIRLL  219 (377)
T ss_dssp             CC-----SEEEECTTSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHH-HHHHH
T ss_pred             hh-----hhhhhccCCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHH-HHHHH
Confidence            10     01111000                12689999995 5888865432 222211     11   2222 22347


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC----------
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG----------  511 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG----------  511 (760)
                      ..+|.+|++|+|+||+|||++.  ++.++|+|||++...+....         ...+ ..++++++...+          
T Consensus       220 ~~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~---------~~~g-~~y~aPE~~~~~~~~~~~~~~~  287 (377)
T 3byv_A          220 ASLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGFEHLVRDGARVV---------SSVS-RGFEPPELEARRATISYHRDRR  287 (377)
T ss_dssp             HHHHHTTEECSCCCGGGEEECT--TCCEEECCGGGCEETTCEEE---------CCCC-TTCCCHHHHHHHTSTHHHHCCE
T ss_pred             HHHHhCCeecCCCCHHHEEEcC--CCCEEEEechhheecCCccc---------CCCC-cCccChhhhccccccccccccc
Confidence            8899999999999999999985  78999999999987654321         1123 566777776655          


Q ss_pred             -CCCCCCChHHHHHHHHHHHH
Q 004334          512 -VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       512 -~~~~~~D~~al~~~~~~~l~  531 (760)
                       ..++..|++++...+.+++.
T Consensus       288 ~~~~~~~DvwSlG~il~ellt  308 (377)
T 3byv_A          288 TLMTFSFDAWALGLVIYWIWC  308 (377)
T ss_dssp             EECCHHHHHHHHHHHHHHHHH
T ss_pred             ccCChhhhHHHHHHHHHHHHH
Confidence             55677899999988776654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.73  E-value=5.1e-18  Score=185.54  Aligned_cols=187  Identities=16%  Similarity=0.083  Sum_probs=130.8

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||.||+|++.       ++.||||+.+.+....                                   -.+.+
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~-----------------------------------~~~~~  114 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-----------------------------------EHRAL  114 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHH-----------------------------------HHHHH
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChH-----------------------------------HHHHH
Confidence            68999999999999972       3689999987643211                                   11235


Q ss_pred             HHHHHHHHHHHHhcCCCC-ceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMD-YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRY  435 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~-~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~  435 (760)
                      .+|++.+.++.    +++ -|.+-.++.+-....+||||||+|++|.++.....               ..++...+...
T Consensus       115 ~~E~~il~~l~----hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  190 (353)
T 4ase_A          115 MSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICY  190 (353)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHH
T ss_pred             HHHHHHHHHcC----CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHH
Confidence            56777777663    333 34444444333455799999999999999764321               11333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          436 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       436 l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      .  +...+..+|..+++|||+||.|||++.  ++.++|+|||+++.+.......    ...-..+.+.+++++++.-+..
T Consensus       191 ~~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~l~~~~y  264 (353)
T 4ase_A          191 SFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFDRVY  264 (353)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHhHhhCCeecCccCccceeeCC--CCCEEECcchhhhhcccCCCce----eeccccccccccCHHHHhcCCC
Confidence            2  334488899999999999999999986  7899999999999875432110    0112346778999999988888


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      +...|++++.-.+.+++
T Consensus       265 ~~ksDVwS~Gv~l~El~  281 (353)
T 4ase_A          265 TIQSDVWSFGVLLWEIF  281 (353)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CCcccEeehHHHHHHHH
Confidence            88899999998876654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.72  E-value=2.6e-17  Score=192.85  Aligned_cols=187  Identities=17%  Similarity=0.159  Sum_probs=127.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.....   +             ...                 +......+|..
T Consensus       195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~---i-------------~~~-----------------~~~~~~~~E~~  241 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKR---I-------------KMK-----------------QGETLALNERI  241 (689)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH---H-------------HHT-----------------TCHHHHHHHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEeHHH---c-------------chh-----------------hhHHHHHHHHH
Confidence            6799999999999999  69999999975410   0             000                 00011122222


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+..+ ... ++|+| .+-.++ +..+..+|||||++|++|.++... ...++...+....  +-..+..+|.+|++|||
T Consensus       242 ~l~ll-~~~-~HP~IV~l~~~f-~~~~~lylVmEy~~GGdL~~~l~~-~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRD  317 (689)
T 3v5w_A          242 MLSLV-STG-DCPFIVCMSYAF-HTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNRFVVYRD  317 (689)
T ss_dssp             HHHHH-SSS-CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHTTTEECCC
T ss_pred             HHHHH-hhC-CCCCEeEEEEEE-EECCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            22222 122 33433 333333 334567999999999999987642 2234433332222  33458889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLNS  532 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~~  532 (760)
                      +||+|||++.  +|.++|+|||++..++.....        ...|++.+|+++++.-| ..+..+|.++++-.+++++..
T Consensus       318 LKPeNILld~--~G~vKL~DFGlA~~~~~~~~~--------t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG  387 (689)
T 3v5w_A          318 LKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG  387 (689)
T ss_dssp             CSGGGEEECT--TSCEEECCCTTCEECSSCCCC--------SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             CchHHeEEeC--CCCEEecccceeeecCCCCCC--------CccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            9999999986  899999999999988765322        23589999999998654 356778999999998888754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.70  E-value=1.8e-17  Score=192.04  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=132.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+..-..                                    -...+.+|++
T Consensus       163 ~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~------------------------------------~~~~~~~Ei~  206 (573)
T 3uto_A          163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHES------------------------------------DKETVRKEIQ  206 (573)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH------------------------------------HHHHHHHHHH
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEeccchh------------------------------------hHHHHHHHHH
Confidence            6799999999999999  6999999987542100                                    0123456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .|..-|.+-.++ +.....+||||||+|++|.++.......++...+...+  +-..+..+|.+|++|+|+
T Consensus       207 il~~l----~hpnIv~l~~~~-~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDl  281 (573)
T 3uto_A          207 TMSVL----RHPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDL  281 (573)
T ss_dssp             HHHHT----CCTTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCCCeEEEEE-EECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccC
Confidence            76665    233334444444 34567799999999999988654333334444433332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|||++....+.++|+|||++..+++....       ....+++.+++++++.....+...|+++++-.+++++.
T Consensus       282 Kp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~-------~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~  351 (573)
T 3uto_A          282 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS  351 (573)
T ss_dssp             CGGGEEESSSSCCCEEECCCSSCEECCTTSEE-------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhccccCCCCCCEEEeeccceeEccCCCce-------eeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99999998534589999999999998765321       12347889999999876666677899999988776654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.70  E-value=6e-17  Score=173.71  Aligned_cols=220  Identities=13%  Similarity=0.095  Sum_probs=120.6

Q ss_pred             hcCCCCCCHHHHHHHHHHHhCCChhhhhcccCc----------cccccccccEEEEEEEC------CeeEEEEEecCCch
Q 004334          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----------EPIAAASLGQVHRARLK------GEEVVVKVQRPGLK  329 (760)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~----------~PIasaSiGQVhrA~l~------G~~VAVKVqrPgi~  329 (760)
                      +++.+.-|.......++...+..+.+.+..|..          +.||+|++|+||+|+..      +..||||+.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~   86 (333)
T 1mqb_A            7 HHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT   86 (333)
T ss_dssp             -------------------------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC
T ss_pred             ccccccCCCCCccccccccccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCC
Confidence            456666677778888888888888888777755          68999999999999982      34699999877432


Q ss_pred             hhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEe
Q 004334          330 DLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME  409 (760)
Q Consensus       330 ~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME  409 (760)
                      +.                                   ....+.+|++.+.++    . ++++.-..-+.......+||||
T Consensus        87 ~~-----------------------------------~~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e  126 (333)
T 1mqb_A           87 EK-----------------------------------QRVDFLGEAGIMGQF----S-HHNIIRLEGVISKYKPMMIITE  126 (333)
T ss_dssp             HH-----------------------------------HHHHHHHHHHHHHTC----C-CTTBCCEEEEECSSSSEEEEEE
T ss_pred             HH-----------------------------------HHHHHHHHHHHHHhC----C-CCCCCcEEEEEecCCCcEEEEe
Confidence            21                                   111234565555544    2 2332222222234466799999


Q ss_pred             ecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHH
Q 004334          410 YVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG  487 (760)
Q Consensus       410 ~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~  487 (760)
                      |++|++|.++.......++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......
T Consensus       127 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~  204 (333)
T 1mqb_A          127 YMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAT  204 (333)
T ss_dssp             CCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECCCCC-----------
T ss_pred             CCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECC--CCcEEECCCCcchhhccccccc
Confidence            99999999976544344555554444333  3488899999999999999999985  8899999999998876543221


Q ss_pred             HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          488 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       488 l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ..   ......+..+++++....+..++..|++++...+.+++
T Consensus       205 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  244 (333)
T 1mqb_A          205 YT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  244 (333)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             cc---cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHH
Confidence            11   11112345677888887776677789999987776654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.70  E-value=5.3e-17  Score=177.91  Aligned_cols=186  Identities=14%  Similarity=0.112  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|+||+||+|+.     +++.||||+..+.-..                                      ..+.+
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~--------------------------------------~~~~~   68 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHP--------------------------------------IRIAA   68 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCH--------------------------------------HHHHH
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCH--------------------------------------HHHHH
Confidence            5899999999999986     2789999987653110                                      01233


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |.+.+..+.   .+..-|.+-.++ +..+..+|||||++|++|.++..    .++...+...+  +-..++.+|.+|++|
T Consensus        69 E~~~l~~~~---~h~nIv~l~~~~-~~~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~~gIiH  140 (361)
T 4f9c_A           69 ELQCLTVAG---GQDNVMGVKYCF-RKNDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQFGIVH  140 (361)
T ss_dssp             HHHHHHHTC---SBTTBCCCSEEE-EETTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHhc---CCCCCceEEEEE-EECCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHCCeEe
Confidence            444443331   122233444444 34566799999999999988752    23333332222  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHH----------------HHH------HHHHHhhcCHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG----------------LLE------AFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~----------------l~~------l~~al~~~D~~~v~~~l~~  509 (760)
                      ||+||+|||++. +.+.++|+|||++..+.+.....                ...      -...-..+++.+++++++.
T Consensus       141 RDiKPeNiLl~~-~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  219 (361)
T 4f9c_A          141 RDVKPSNFLYNR-RLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLT  219 (361)
T ss_dssp             SCCSGGGEEEET-TTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHT
T ss_pred             CcCCHHHeEEeC-CCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHc
Confidence            999999999985 34899999999998665421100                000      0011234788999999875


Q ss_pred             cC-CCCCCCChHHHHHHHHHHHH
Q 004334          510 MG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       510 lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      -. ..+...|+++++-.+++++.
T Consensus       220 ~~~~y~~~~DiWSlG~il~ell~  242 (361)
T 4f9c_A          220 KCPNQTTAIDMWSAGVIFLSLLS  242 (361)
T ss_dssp             TCSCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccchhhhHHHHHHHHH
Confidence            43 35667899999988877764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.68  E-value=3.2e-17  Score=182.00  Aligned_cols=189  Identities=17%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|+.  +|+.||||+.+.....                                  ......+.+|++
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~----------------------------------~~~~~~~~~Ei~  105 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV----------------------------------VTNAKRTLRELK  105 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS----------------------------------HHHHHHHHHHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccc----------------------------------hHHHHHHHHHHH
Confidence            6899999999999998  6999999987542110                                  011223456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+.++    .|.+-|.+-.++..     .....+|||||++| .|.++... ...++...+...+  +-..+..+|.+|+
T Consensus       106 il~~l----~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~g-~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH~~~i  179 (398)
T 4b99_A          106 ILKHF----KHDNIIAIKDILRPTVPYGEFKSVYVVLDLMES-DLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMHSAQV  179 (398)
T ss_dssp             HHHHC----CCTTBCCEEEECCCSSCTTTCCCEEEEEECCSE-EHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhc----CCCCcceEeeeeecccccccCCEEEEEEeCCCC-CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence            77765    23333444444322     12456999999986 46665432 2234444433332  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~  528 (760)
                      +|||+||+|||++.  +|.++++|||+++.+.......-  ....-..+++.+++++++.- ...+...|+++++-.+++
T Consensus       180 iHRDlKP~NIl~~~--~~~~Ki~DFGla~~~~~~~~~~~--~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~e  255 (398)
T 4b99_A          180 IHRDLKPSNLLVNE--NCELKIGDFGMARGLCTSPAEHQ--YFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGE  255 (398)
T ss_dssp             BCCCCCGGGEEECT--TCCEEECCCTTCBCC-------C--CCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred             cCCCcCccccccCC--CCCEEEeecceeeecccCccccc--cccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHH
Confidence            99999999999986  89999999999988754321100  00111347888999997643 345677899999988877


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       256 ll~  258 (398)
T 4b99_A          256 MLA  258 (398)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.68  E-value=1.2e-16  Score=168.85  Aligned_cols=124  Identities=13%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             eEEEEeecCCCchhhhhhhhhc--CCCH---HHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          404 QILTMEYVPGIKINRIQSLDEL--GVDR---KRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l~~~--g~d~---~~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                      .++||||++|++|.++......  ..+.   ..++..++ ..+..+|..|++|+|+||+||+++.  ++.++|+|||++.
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~-~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~  212 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIA-EAVEFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVT  212 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHH-HHHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCE
T ss_pred             EEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHH-HHHHHHHhCCeeecCCCcccEEEeC--CCCEEEeecCccc
Confidence            6899999999999997643211  1121   22333333 3478899999999999999999985  7899999999999


Q ss_pred             ccChhhHHHHHH------HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          479 SISPNIREGLLE------AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       479 ~l~~~~r~~l~~------l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      .++......-..      .......+++.++++++..-...++..|++++...+.+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (332)
T 3qd2_B          213 AMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL  270 (332)
T ss_dssp             ECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHH
Confidence            887654321110      0001123677888898888777778889999998877665

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.68  E-value=8.7e-17  Score=169.55  Aligned_cols=215  Identities=19%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHH
Q 004334          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNL  339 (760)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL  339 (760)
                      |+.+|++.||.  ..+++.-++.++..+.+.|.-.  +.||.|++|.||+|+.  +|+.||||+.+..-.          
T Consensus         2 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~--~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----------   67 (314)
T 3com_A            2 LETVQLRNPPR--RQLKKLDEDSLTKQPEEVFDVL--EKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD----------   67 (314)
T ss_dssp             ------------------------------CEEEE--EECC----CEEEEEEETTTCCEEEEEEEETTSC----------
T ss_pred             ccccccCCCCc--cchhhcCchhhhhcchhhhhhh--eeeccCCCeEEEEEEECCCCCEEEEEecCchHH----------
Confidence            56788888863  4556666666666555554432  5799999999999999  499999998765210          


Q ss_pred             HHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhh
Q 004334          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI  419 (760)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~  419 (760)
                                          ..        .+.+|+..+.++    .+..-+.+-.++ ......++||||++|++|.++
T Consensus        68 --------------------~~--------~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~  114 (314)
T 3com_A           68 --------------------LQ--------EIIKEISIMQQC----DSPHVVKYYGSY-FKNTDLWIVMEYCGAGSVSDI  114 (314)
T ss_dssp             --------------------CH--------HHHHHHHHHHTC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHH
T ss_pred             --------------------HH--------HHHHHHHHHHhC----CCCCCccEEEEE-EeCCEEEEEeecCCCCCHHHH
Confidence                                01        123344444433    222222222222 234567999999999999998


Q ss_pred             hhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhh
Q 004334          420 QSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE  497 (760)
Q Consensus       420 ~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~  497 (760)
                      .......++...+...+.  -..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......      ....
T Consensus       115 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~  186 (314)
T 3com_A          115 IRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNT--EGHAKLADFGVAGQLTDTMAKR------NTVI  186 (314)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECBTTBSCB------CCCC
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECC--CCCEEEeecccchhhhhhcccc------CccC
Confidence            754444455554443332  23478899999999999999999985  7899999999998775432110      1123


Q ss_pred             cCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          498 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       498 ~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++..++++++...+..++..|++++...+.+++.
T Consensus       187 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  220 (314)
T 3com_A          187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAE  220 (314)
T ss_dssp             SCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCccChhhcCCCCCCccccHHHHHHHHHHHHh
Confidence            5667778888776667778899999987776653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.67  E-value=6.2e-17  Score=177.22  Aligned_cols=193  Identities=16%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             hhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          291 DVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       291 ~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      ..|.....+.||.|++|+||+|+.  +|+.||||+.++.-...                                    .
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~------------------------------------~  130 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD------------------------------------K  130 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHH------------------------------------H
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccccc------------------------------------H
Confidence            333333457899999999999998  59999999987632110                                    1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHh
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILS  446 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~  446 (760)
                      ..+.+|+..+.++     ++++|.-..-+.......+|||||++|++|.+........++...+...  .+-..+..+|.
T Consensus       131 ~~~~~E~~~l~~l-----~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~  205 (373)
T 2x4f_A          131 EEVKNEISVMNQL-----DHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQ  205 (373)
T ss_dssp             HHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-----CCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1234565555544     2333322222334456679999999999998865433333444433332  23345788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      .|++|+|+||+||++....+++++|+|||++..+.+....       ....+++.++++++...+..+...|++++.-.+
T Consensus       206 ~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  278 (373)
T 2x4f_A          206 MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL-------KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIA  278 (373)
T ss_dssp             TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC-------CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHH
T ss_pred             CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc-------ccccCCCcEeChhhccCCCCCcHHhHHHHHHHH
Confidence            9999999999999996434679999999999988654321       112366778888888777667778999999877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       279 ~ellt  283 (373)
T 2x4f_A          279 YMLLS  283 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.67  E-value=3e-16  Score=165.13  Aligned_cols=185  Identities=14%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+........                                 .+....+.+|+.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   63 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK---------------------------------EETLKRFEREVH   63 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCC---------------------------------HHHHHHHHHHHH
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCcccc---------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  58999999875421111                                 111223455666


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++    . +++  +++++.  +.....++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        64 ~l~~l----~-hp~--iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~  135 (294)
T 4eqm_A           64 NSSQL----S-HQN--IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDMRIVHR  135 (294)
T ss_dssp             HHTTC----C-BTT--BCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHhcC----C-CCC--CceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccC
Confidence            55544    2 232  333332  3445679999999999999876432 234444433332  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+||+++.  +++++|+|||++..++.......     ....+++.+++++...-...++..|++++...+.+++.
T Consensus       136 Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~  207 (294)
T 4eqm_A          136 DIKPQNILIDS--NKTLKIFDFGIAKALSETSLTQT-----NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLV  207 (294)
T ss_dssp             CCCGGGEEECT--TSCEEECCCSSSTTC------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHEEECC--CCCEEEEeCCCcccccccccccc-----CccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHh
Confidence            99999999985  78999999999988765432211     11235667788888877777778899999988777654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.66  E-value=1.1e-15  Score=158.98  Aligned_cols=184  Identities=21%  Similarity=0.234  Sum_probs=119.4

Q ss_pred             cccccccccEEEEEEE--CCee--EEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEE--VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~--VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      .+||+|++|+||+|+.  +|+.  ||||+.+++.... ..       ...++.. .+.......+..   ......+.+|
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~-~~-------~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~E  120 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEF-DK-------MDEYLYG-DERFDMRRISPK---EKVFIWTEKE  120 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC---------------GGGTTT-CTTSCC----CH---HHHHHHHHHH
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccch-hh-------HHHhhcc-cchhhhhccChH---HHHHHHHHHH
Confidence            6899999999999998  7999  9999988753211 00       0000000 000000000001   1122346789


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecC--C---CchhhhhhhhhcCCCHHHHHHHHHHHHHHHHH-hCC
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP--G---IKINRIQSLDELGVDRKRLGRYAVESYLEQIL-SHG  448 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ie--G---~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~-~~G  448 (760)
                      ++++.++.+.     ++.+|.++.  ....+|||||+.  |   ..|.++... ....+...++..++. .+..+| ..|
T Consensus       121 ~~~l~~l~~~-----~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~~-~~~~~~~~i~~qi~~-~l~~lH~~~g  191 (258)
T 1zth_A          121 FRNLERAKEA-----GVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGRE-LKELDVEGIFNDVVE-NVKRLYQEAE  191 (258)
T ss_dssp             HHHHHHHHHT-----TCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGGG-GGGSCHHHHHHHHHH-HHHHHHHTSC
T ss_pred             HHHHHHHHhC-----CCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhhc-cChHHHHHHHHHHHH-HHHHHHHHCC
Confidence            9999998653     367788875  356799999994  2   255554211 111244555555544 477899 999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                      ++|+|+||+|||++   + +++|+|||++..++......       ...+|.+.+.+.+..+|+..
T Consensus       192 ivHrDlkp~NILl~---~-~~~liDFG~a~~~~~~~~~~-------~l~rd~~~~~~~f~~~g~~~  246 (258)
T 1zth_A          192 LVHADLSEYNIMYI---D-KVYFIDMGQAVTLRHPMAES-------YLERDVRNIIRFFSKYGVKA  246 (258)
T ss_dssp             EECSSCSTTSEEES---S-SEEECCCTTCEETTSTTHHH-------HHHHHHHHHHHHHHTTTCCC
T ss_pred             EEeCCCCHHHEEEc---C-cEEEEECcccccCCCccHHH-------HHHHHHHHHHHHHHHcCCCC
Confidence            99999999999997   3 89999999999887654332       24678889999998888753

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.66  E-value=3.6e-16  Score=164.97  Aligned_cols=182  Identities=18%  Similarity=0.189  Sum_probs=127.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-...                                    ...+.+|+.
T Consensus        26 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~~~~~E~~   69 (297)
T 3fxz_A           26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------KELIINEIL   69 (297)
T ss_dssp             EEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC------------------------------------HHHHHHHHH
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEeecccccH------------------------------------HHHHHHHHH
Confidence            6899999999999997  69999999876421110                                    012344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-..+ ......++||||++|++|.++...  ...+...+...+.  -..+..+|..|++|+|+
T Consensus        70 ~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dl  142 (297)
T 3fxz_A           70 VMREN----KNPNIVNYLDSY-LVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQVIHRDI  142 (297)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHhcC----CCCCCCeEeEEE-EECCEEEEEEECCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCCceeCCC
Confidence            55443    222222222222 335667999999999999987643  2345444433322  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++..+++....      .....+++.++++++..-+..++..|++++...+.+++.
T Consensus       143 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  211 (297)
T 3fxz_A          143 KSDNILLGM--DGSVKLTDFGFCAQITPEQSK------RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE  211 (297)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEeeCCCceecCCcccc------cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999985  889999999999887654321      111246778888888887777888899999988777654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.66  E-value=4.6e-16  Score=167.41  Aligned_cols=184  Identities=16%  Similarity=0.180  Sum_probs=125.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.......                                  ......+.+|++
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~~E~~   66 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN----------------------------------PTSLQKLFREVR   66 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------HHHHHHHHHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC----------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  6999999987652111                                  011123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+-.++ +.....++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        67 ~l~~l----~hpnIv~l~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDl  140 (328)
T 3fe3_A           67 IMKIL----NHPNIVKLFEVI-ETEKTLYLIMEYASGGEVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDL  140 (328)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEECCCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHHhC----CCCCEeeEEEEE-EECCEEEEEEECCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCC
Confidence            66655    222222222222 3445679999999999999875322 234433333222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++..++.....       ....+++.++++++..-... ++..|++++...+.+++.
T Consensus       141 kp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  209 (328)
T 3fe3_A          141 KAENLLLDA--DMNIKIADFGFSNEFTVGGKL-------DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS  209 (328)
T ss_dssp             CGGGEEECT--TSCEEECSTTCCGGGSSSCGG-------GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcC--CCCEEEeeccCceecCCCCcc-------ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHh
Confidence            999999985  889999999999877654321       12346778888888765543 356799999987776653

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=1.8e-16  Score=169.62  Aligned_cols=184  Identities=16%  Similarity=0.241  Sum_probs=129.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+.+..-.+                                     ...+.+|+.
T Consensus        11 ~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-------------------------------------~~~~~~E~~   53 (321)
T 1tki_A           11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-------------------------------------QVLVKKEIS   53 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-------------------------------------HHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEEecCccc-------------------------------------HHHHHHHHH
Confidence            6899999999999999  5999999987642110                                     112345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+-.++ +.....++||||++|++|.+........++...+...+  +-..+..+|..|++|+|+
T Consensus        54 ~l~~l----~hpnIv~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dl  128 (321)
T 1tki_A           54 ILNIA----RHRNILHLHESF-ESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDI  128 (321)
T ss_dssp             HHHHS----CCTTBCCEEEEE-EETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCCCeEeEEE-ecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCC
Confidence            55544    222223333333 34567899999999999998764433345554444333  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++...++.++|+|||++..+.+....       ....+++.++++++...+..++..|++++...+.+++.
T Consensus       129 kp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~  198 (321)
T 1tki_A          129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS  198 (321)
T ss_dssp             CGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEccCCCCCEEEEECCCCeECCCCCcc-------ccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHh
Confidence            99999998544689999999999988654321       12346778888888876666677899999987776654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.65  E-value=6.5e-16  Score=163.00  Aligned_cols=191  Identities=14%  Similarity=0.073  Sum_probs=127.7

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+..+.-.                                    +....+.+|+
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~------------------------------------~~~~~~~~E~   58 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDE------------------------------------ETQRTFLKEV   58 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCH------------------------------------HHHHHHHHHH
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEeccCCH------------------------------------HHHHHHHHHH
Confidence            36899999999999999  599999998754211                                    1122345566


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.+.++    .+..-+.+-.++ ......++||||++|++|.++.......++...+...+  +-..+..+|..|++|+|
T Consensus        59 ~~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~d  133 (310)
T 3s95_A           59 KVMRCL----EHPNVLKFIGVL-YKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRD  133 (310)
T ss_dssp             HHHTTC----CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHHhC----CCcCcccEEEEE-ecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCC
Confidence            655544    222222222222 23456799999999999999865433344544443332  23448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH--H------HHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE--A------FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~--l------~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      +||+||+++.  ++.++|+|||++..+..........  .      ......+++.++++++...+..++..|++++...
T Consensus       134 lkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~  211 (310)
T 3s95_A          134 LNSHNCLVRE--NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIV  211 (310)
T ss_dssp             CSTTSEEECT--TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHH
T ss_pred             CCcCeEEECC--CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHH
Confidence            9999999985  8899999999998876543321100  0      0001246777888988877777788899999988


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       212 l~el~~  217 (310)
T 3s95_A          212 LCEIIG  217 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            777653

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.65  E-value=7.3e-16  Score=159.08  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=127.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|+. +++.||||+.+++....                                     +.+.+|++.
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~~~~~E~~~   58 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------EDFIEEAEV   58 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------HHHHHHHHH
T ss_pred             heecCCCccEEEEEEecCCCeEEEEEecccccCH-------------------------------------HHHHHHHHH
Confidence            6899999999999999 78999999987642111                                     123455555


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.++    . +++  +++++.  ......++||||++|++|.++.......++...+...+  +-..+..+|..|++|+|
T Consensus        59 l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~d  131 (269)
T 4hcu_A           59 MMKL----S-HPK--LVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRD  131 (269)
T ss_dssp             HHTC----C-CTT--BCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHhC----C-CCC--EeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            5554    2 232  333333  33456799999999999999765444345555444333  22448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.||+++.  ++.++|+|||++..+........     ....++..++++++...+..++..|++++...+.+++
T Consensus       132 ikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll  201 (269)
T 4hcu_A          132 LAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF  201 (269)
T ss_dssp             CCGGGEEECG--GGCEEECCTTGGGGBCCHHHHST-----TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cchheEEEcC--CCCEEeccccccccccccccccc-----cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHh
Confidence            9999999986  78999999999988765432211     1122345677888887777777889999988776654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.65  E-value=3.8e-16  Score=169.95  Aligned_cols=191  Identities=20%  Similarity=0.198  Sum_probs=124.9

Q ss_pred             ccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .|+ .+.||.|++|.||+|+.  +|+.||||+.+......                                 ++....+
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~---------------------------------~~~~~~~   70 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQ---------------------------------DDDVECT   70 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTTHHHH
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcc---------------------------------hhHHHHH
Confidence            443 36899999999999998  59999999976521000                                 0001123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      ..|.+.+..+    .+++++.-..-+.......+|||||++|++|.+..... ..++...+...+  +-..+..+|..|+
T Consensus        71 ~~E~~il~~~----~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~gi  145 (353)
T 3txo_A           71 MTEKRILSLA----RNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLHDKGI  145 (353)
T ss_dssp             HHHHHHHHHT----TTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhc----cCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3454444433    23343322222233455679999999999998865322 234444333222  2344788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.|||++.  +|.++|+|||++.........      .....+++.+++++++.-...++..|++++...+.++
T Consensus       146 vHrDlkp~NILl~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  217 (353)
T 3txo_A          146 IYRDLKLDNVLLDH--EGHCKLADFGMCKEGICNGVT------TATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEM  217 (353)
T ss_dssp             BCCCCCGGGEEECT--TSCEEECCCTTCBCSCC---------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHEEECC--CCCEEEccccceeecccCCcc------ccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHH
Confidence            99999999999985  899999999999865433221      1123467888888887766567788999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       218 l~  219 (353)
T 3txo_A          218 LC  219 (353)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.64  E-value=8.6e-16  Score=163.32  Aligned_cols=190  Identities=16%  Similarity=0.149  Sum_probs=122.5

Q ss_pred             hcccC-ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          293 FERFD-VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       293 F~~fd-~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +..|. .+.||.|++|.||+|+.+|+.||||+........                                  +....+
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~   81 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA----------------------------------ERVNEF   81 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSH----------------------------------HHHHHH
T ss_pred             hhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCH----------------------------------HHHHHH
Confidence            33443 3689999999999999999999999976532111                                  111234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~L~qI~  445 (760)
                      .+|++.+.++.     ++++  ++++.  ......++||||++|++|.++......  .++...+...+  +-..+..+|
T Consensus        82 ~~E~~~l~~l~-----hp~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH  154 (309)
T 3p86_A           82 LREVAIMKRLR-----HPNI--VLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH  154 (309)
T ss_dssp             HHHHHHHHHCC-----CTTB--CCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-----CCCE--eeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            56766666652     2332  23332  334567999999999999987643211  13433333322  233478899


Q ss_pred             hCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          446 SHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       446 ~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      ..|  ++|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++......++..|++++.
T Consensus       155 ~~~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  226 (309)
T 3p86_A          155 NRNPPIVHRNLKSPNLLVDK--KYTVKVCDFGLSRLKASTFLS------SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFG  226 (309)
T ss_dssp             TSSSCCCCTTCCGGGEEECT--TCCEEECCCC-----------------------CCTTSCHHHHTTCCCCTTHHHHHHH
T ss_pred             cCCCCEECCCCChhhEEEeC--CCcEEECCCCCCccccccccc------cccCCCCccccChhhhcCCCCCchhhHHHHH
Confidence            999  999999999999985  789999999998765443211      1112456778888888777777888999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      ..+.+++.
T Consensus       227 ~il~ellt  234 (309)
T 3p86_A          227 VILWELAT  234 (309)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776653

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.64  E-value=5.7e-16  Score=160.44  Aligned_cols=188  Identities=14%  Similarity=0.099  Sum_probs=110.7

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+..+.....                                 .+....+.+|+
T Consensus        16 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~e~   62 (278)
T 3cok_A           16 GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK---------------------------------AGMVQRVQNEV   62 (278)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCHHHHHHHH
T ss_pred             eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh---------------------------------hhHHHHHHHHH
Confidence            37899999999999998  69999999876421000                                 00112234455


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+-.. .......++||||++|.+|.++.......++...+...+  +-..+..+|..|++|+|
T Consensus        63 ~~l~~l----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~d  137 (278)
T 3cok_A           63 KIHCQL----KHPSILELYNY-FEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRD  137 (278)
T ss_dssp             HHHTTB----CCTTBCCEEEE-EECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSS
T ss_pred             HHHHhC----CCCCeEeEEEE-EccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            544433    22222222222 234556799999999999998765433334544443333  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..+........      ...++..++++++..-+..++..|++++...+.+++.
T Consensus       138 l~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  207 (278)
T 3cok_A          138 LTLSNLLLTR--NMNIKIADFGLATQLKMPHEKHY------TLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLI  207 (278)
T ss_dssp             CCGGGEEECT--TCCEEECCCTTCEECC----------------------------------CTHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcC--CCCEEEEeecceeeccCCCCcce------eccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHh
Confidence            9999999985  78999999999988764432211      1235677888888776666778999999987766653

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.64  E-value=2.8e-16  Score=166.33  Aligned_cols=187  Identities=21%  Similarity=0.217  Sum_probs=118.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 .+....+.+|+.
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~E~~   64 (311)
T 3ork_A           18 EILGFGGMSEVHLARDLRDHRDVAVKVLRADLARD---------------------------------PSFYLRFRREAQ   64 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTS---------------------------------HHHHHHHHHHHT
T ss_pred             EEEccCCCEEEEEEEECCCCceEEEEEeCccccCC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  69999999987643221                                 011122344444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC--CC----eEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT--TP----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s--t~----~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      .+.++    .+ +  .|++++..+.  ..    .++||||++|++|.++.... ..++...+...+  +-..+..+|..|
T Consensus        65 ~l~~l----~h-p--~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  136 (311)
T 3ork_A           65 NAAAL----NH-P--AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQNG  136 (311)
T ss_dssp             TCCCC----CC-T--TBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcC----CC-C--CcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            43333    22 2  2334433221  11    29999999999999976432 234444433332  223478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||+||+++.  ++.++|+|||++..+.........   .....++..++++++...+..++..|++++...+.+
T Consensus       137 ivH~dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~  211 (311)
T 3ork_A          137 IIHRDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE  211 (311)
T ss_dssp             CCCCCCCGGGEEEET--TSCEEECCCSCC---------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCHHHEEEcC--CCCEEEeeccCccccccccccccc---ccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHH
Confidence            999999999999986  789999999999877654321110   111235777888888877766777899999988776


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       212 ll~  214 (311)
T 3ork_A          212 VLT  214 (311)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.64  E-value=1.2e-15  Score=158.48  Aligned_cols=181  Identities=14%  Similarity=0.114  Sum_probs=123.5

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|+. +++.||||+.+++....                                     ..+.+|++.
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~~~~~E~~~   72 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-------------------------------------DEFIEEAKV   72 (283)
T ss_dssp             EECC---CEEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------HHHHHHHHH
T ss_pred             hhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCH-------------------------------------HHHHHHHHH
Confidence            6899999999999999 67899999987642111                                     123445555


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffHaD  453 (760)
                      +.++    . +++  +++++.  ......++||||++|++|.++.......++...+...+.+  ..+..+|..|++|+|
T Consensus        73 l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~d  145 (283)
T 3gen_A           73 MMNL----S-HEK--LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRD  145 (283)
T ss_dssp             HHTC----C-CTT--BCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HhcC----C-CCC--EeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCC
Confidence            5544    2 222  333333  3345679999999999999976543444555554443322  348889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||+||+++.  ++.++|+|||++..+........     ....+++.++++++...+..++..|++++...+.+++
T Consensus       146 ikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~  215 (283)
T 3gen_A          146 LAARNCLVND--QGVVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY  215 (283)
T ss_dssp             CSGGGEEECT--TSCEEECSTTGGGGBCCHHHHST-----TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred             CccceEEEcC--CCCEEEccccccccccccccccc-----cCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHH
Confidence            9999999985  78999999999988765432111     1122345677888777666677789999988776654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.63  E-value=4.4e-15  Score=156.85  Aligned_cols=171  Identities=15%  Similarity=0.195  Sum_probs=114.9

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|++|+||+|+. +|+.||||+.+++.... ..+ ...+   ..+          ...|..   .....+.+|+..
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~-~~~-~~~~---~~~----------~~~w~~---~~~~~~~~E~~~  157 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF-KKV-KEKR---DYG----------DLHFSV---LAIRSARNEFRA  157 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC-------CC-CC--------------------CHHH---HHHHHHHHHHHH
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEECCCCch-hhh-hhhh---hhc----------chhhHH---HHHHHHHHHHHH
Confidence            6899999999999999 69999999988752211 000 0000   000          011211   223356778888


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPG  457 (760)
                      +.++.      . +.+|.++..  +..++||||++|++|.++ ..    .+...++..++. .+..+|..|++|+|+||+
T Consensus       158 l~~l~------~-~~v~~~~~~--~~~~lvmE~~~g~~L~~l-~~----~~~~~i~~qi~~-~l~~lH~~giiHrDlkp~  222 (282)
T 1zar_A          158 LQKLQ------G-LAVPKVYAW--EGNAVLMELIDAKELYRV-RV----ENPDEVLDMILE-EVAKFYHRGIVHGDLSQY  222 (282)
T ss_dssp             HHHTT------T-SSSCCEEEE--ETTEEEEECCCCEEGGGC-CC----SCHHHHHHHHHH-HHHHHHHTTEECSCCSTT
T ss_pred             HHhcc------C-CCcCeEEec--cceEEEEEecCCCcHHHc-ch----hhHHHHHHHHHH-HHHHHHHCCCEeCCCCHH
Confidence            88775      2 567776643  556999999999999883 11    234455555444 478899999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH-HHcCC
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM-VQMGV  512 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l-~~lG~  512 (760)
                      |||++   +|.++|+|||++...+......+       ..+|.+.+...+ ...|.
T Consensus       223 NILl~---~~~vkl~DFG~a~~~~~~~a~e~-------l~rdv~~i~~~f~~~~~~  268 (282)
T 1zar_A          223 NVLVS---EEGIWIIDFPQSVEVGEEGWREI-------LERDVRNIITYFSRTYRT  268 (282)
T ss_dssp             SEEEE---TTEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHHHHCC
T ss_pred             HEEEE---CCcEEEEECCCCeECCCCCHHHH-------HHHHHHHHHHHHHHhcCC
Confidence            99998   68999999999998876543322       346667777776 45554

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.63  E-value=2.1e-15  Score=161.51  Aligned_cols=184  Identities=14%  Similarity=0.139  Sum_probs=111.6

Q ss_pred             CccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       297 d~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ..++||.|++|.||+|+.  +|+.||||+........                                       ..+|
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~e   55 (325)
T 3kn6_A           15 KDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEAN---------------------------------------TQKE   55 (325)
T ss_dssp             TSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHH---------------------------------------HHHH
T ss_pred             CCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhh---------------------------------------HHHH
Confidence            347899999999999999  59999999976532111                                       2234


Q ss_pred             HHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          375 AANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      ...+.++.    ++++| .+-.++ ......+|||||++|++|.+..... ..++...+...+  +-..+..+|..|++|
T Consensus        56 ~~~l~~l~----~h~niv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH  129 (325)
T 3kn6_A           56 ITALKLCE----GHPNIVKLHEVF-HDQLHTFLVMELLNGGELFERIKKK-KHFSETEASYIMRKLVSAVSHMHDVGVVH  129 (325)
T ss_dssp             HHHHHHTT----TCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHhc----CCCCeeEEEEEE-EcCCEEEEEEEccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCCee
Confidence            44444332    23332 222222 3445679999999999998876432 234444433332  223478899999999


Q ss_pred             cCCCCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+||+++..+ +..++|+|||++....+.....      ....++..++++++..-...++..|++++...+.+++
T Consensus       130 ~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  203 (325)
T 3kn6_A          130 RDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPL------KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTML  203 (325)
T ss_dssp             CCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------------CCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHEEEecCCCcccEEEeccccceecCCCCCcc------cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHH
Confidence            99999999997511 1279999999998776543211      1123467788888877666667789999998877766


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       204 ~  204 (325)
T 3kn6_A          204 S  204 (325)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.62  E-value=6.1e-16  Score=170.60  Aligned_cols=193  Identities=17%  Similarity=0.248  Sum_probs=132.8

Q ss_pred             hhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      +++..|+ .+.||.|++|+||+|+.  +|+.||+|+........                                    
T Consensus        48 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~------------------------------------   91 (387)
T 1kob_A           48 SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD------------------------------------   91 (387)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHH------------------------------------
T ss_pred             ccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhh------------------------------------
Confidence            4455554 37899999999999999  59999999876532110                                    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  445 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~  445 (760)
                      ...+.+|+..+..+    .+..-+.+-.++ +.....+|||||++|++|.+........++...+...+.  -..+..+|
T Consensus        92 ~~~~~~E~~il~~l----~hpnIv~~~~~~-~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH  166 (387)
T 1kob_A           92 KYTVKNEISIMNQL----HHPKLINLHDAF-EDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH  166 (387)
T ss_dssp             HHHHHHHHHHHTTC----CSTTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCcCCCeEEEEE-EeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11234555555443    222223333333 335667999999999999887644333455544443332  23478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      ..|++|+|+||.||+++...++.++|+|||++..++.....       ....+++.++++++...+..+...|++++...
T Consensus       167 ~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~i  239 (387)
T 1kob_A          167 EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-------KVTTATAEFAAPEIVDREPVGFYTDMWAIGVL  239 (387)
T ss_dssp             HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHH
T ss_pred             hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcce-------eeeccCCCccCchhccCCCCCCcccEeeHhHH
Confidence            99999999999999997534578999999999988654211       12246778888988877666777899999987


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       240 l~ellt  245 (387)
T 1kob_A          240 GYVLLS  245 (387)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.62  E-value=6e-16  Score=169.29  Aligned_cols=186  Identities=14%  Similarity=0.129  Sum_probs=115.7

Q ss_pred             ccccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      .+.||.|++|+||+|++.     |..||||+.+.+..+.                                   ..+.+.
T Consensus        50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~   94 (373)
T 2qol_A           50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK-----------------------------------QRRDFL   94 (373)
T ss_dssp             CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHH-----------------------------------HHHHHH
T ss_pred             eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHH-----------------------------------HHHHHH
Confidence            368999999999999873     6789999987643211                                   112344


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      +|+..+.++    . +++  |++++.  ......++||||++|++|.++.......++...+...+  +...+..+|..|
T Consensus        95 ~E~~~l~~l----~-h~n--iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  167 (373)
T 2qol_A           95 GEASIMGQF----D-HPN--IIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMG  167 (373)
T ss_dssp             HHHHHHTTC----C-CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhC----C-CCC--CCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            565555544    2 232  233332  33456799999999999999875443345554444333  234488899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.||+++.  ++.++|+|||++..+..........   ........+++++....+..++..|++++...+.+
T Consensus       168 ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~e  242 (373)
T 2qol_A          168 YVHRDLAARNILINS--NLVCKVSDFGLGRVLEDDPEAAYTT---RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWE  242 (373)
T ss_dssp             CCCSCCCGGGEEECT--TCCEEECCC-------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCCcceEEEcC--CCCEEECcCccccccccCCccceec---cCCCcCCCccChhhhccCCcCchhcHHHHHHHHHH
Confidence            999999999999985  7899999999998876543221110   00112334677777776767777899999887766


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       243 ll  244 (373)
T 2qol_A          243 VM  244 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.62  E-value=1.2e-15  Score=157.13  Aligned_cols=181  Identities=15%  Similarity=0.105  Sum_probs=125.1

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|+. ++..||||+.+++-...                                     ..+.+|+..
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~~~~~E~~~   56 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE-------------------------------------DEFFQEAQT   56 (268)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECBTTBCH-------------------------------------HHHHHHHHH
T ss_pred             eeeccCCCceEEEEEecCceeEEEEEeccCCCcH-------------------------------------HHHHHHHHH
Confidence            6899999999999998 57899999987632110                                     123456666


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      +.++.     +++  +++++.  ......++||||++|.+|.++.......++...+...+.  -..+..+|..|++|+|
T Consensus        57 l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~d  129 (268)
T 3sxs_A           57 MMKLS-----HPK--LVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRD  129 (268)
T ss_dssp             HHHCC-----CTT--BCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESS
T ss_pred             HHhCC-----CCC--EeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            66552     233  233332  344567999999999999997654433455554443332  2347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||+||+++.  ++.++|+|||++...........     ....++..++++++......++..|++++...+.+++
T Consensus       130 ikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  199 (268)
T 3sxs_A          130 LAARNCLVDR--DLCVKVSDFGMTRYVLDDQYVSS-----VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVF  199 (268)
T ss_dssp             CSGGGEEECT--TCCEEECCTTCEEECCTTCEEEC-----CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHH
T ss_pred             cCcceEEECC--CCCEEEccCccceecchhhhhcc-----cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHH
Confidence            9999999985  88999999999987755421100     0012234567777777666778889999998776654

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.62  E-value=1.9e-15  Score=163.77  Aligned_cols=187  Identities=15%  Similarity=0.109  Sum_probs=125.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+....+.+|..
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~~~~E~~   61 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVND---------------------------------DEDIDWVQTEKH   61 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCS---------------------------------HHHHHHHHHHHH
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcc---------------------------------hHHHHHHHHHHH
Confidence            6899999999999999  59999999987532110                                 011122334544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+++++.-..-+.......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        62 ~l~~~----~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDl  136 (345)
T 3a8x_A           62 VFEQA----SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERGIIYRDL  136 (345)
T ss_dssp             HHHHT----TTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhc----CCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            44433    23333322222223446679999999999998865422 234433332222  233478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  +|.++|+|||++.........      .....+++.+++++++.....+...|++++.-.+.+++.
T Consensus       137 kp~NIll~~--~g~~kL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  205 (345)
T 3a8x_A          137 KLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  205 (345)
T ss_dssp             CGGGEEECT--TSCEEECCGGGCBCSCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEEeccccccccCCCCc------ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHh
Confidence            999999985  899999999999864322110      111246788889998876666778899999988877664

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.61  E-value=6e-16  Score=172.28  Aligned_cols=188  Identities=18%  Similarity=0.174  Sum_probs=124.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-  .              ...                 .....+.+|..
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~--~--------------~~~-----------------~~~~~~~~E~~  113 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWD--M--------------LKR-----------------GEVSCFREERD  113 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH--H--------------HHH-----------------GGGCCHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH--h--------------hhH-----------------HHHHHHHHHHH
Confidence            6899999999999999  59999999976410  0              000                 00011234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+     +++++.-..-+.......+|||||++|++|.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus       114 il~~~-----~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDL  188 (412)
T 2vd5_A          114 VLVNG-----DRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDI  188 (412)
T ss_dssp             HHHHS-----CTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhc-----CCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccc
Confidence            44332     23332222222233456799999999999998764332234444332222  334578899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCChHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-------G~~~~~~D~~al~~~~~  527 (760)
                      ||.|||++.  +|.++|+|||++..+.......     .....+++.+++++++..       +..+...|++++...+.
T Consensus       189 Kp~NILld~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvily  261 (412)
T 2vd5_A          189 KPDNILLDR--CGHIRLADFGSCLKLRADGTVR-----SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAY  261 (412)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHH
T ss_pred             CHHHeeecC--CCCEEEeechhheeccCCCccc-----cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHH
Confidence            999999985  8999999999998876542100     011347888899988862       34567789999998887


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       262 ellt  265 (412)
T 2vd5_A          262 EMFY  265 (412)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7663

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.61  E-value=6.9e-16  Score=165.07  Aligned_cols=185  Identities=14%  Similarity=0.100  Sum_probs=123.2

Q ss_pred             cccccccccEEEEEEE--C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|++  +   +..||||+.+.+..+.                                   ....+.+
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~   99 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTER-----------------------------------QRRDFLS   99 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHH-----------------------------------HHHHHHH
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHH-----------------------------------HHHHHHH
Confidence            6899999999999998  2   4569999987643221                                   1123445


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  449 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gf  449 (760)
                      |+..+.++    . +++  |++++.  ......++||||++|++|.++.......++...+...+.  -..+..+|..|+
T Consensus       100 E~~~l~~l----~-h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  172 (325)
T 3kul_A          100 EASIMGQF----D-HPN--IIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY  172 (325)
T ss_dssp             HHHHHTTC----C-CTT--BCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHhC----C-CCC--CCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            65555544    2 233  233332  334567999999999999998654434455554443332  234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  ++.++|+|||++..+.........   .........++++++...+..++..|++++...+.++
T Consensus       173 vH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el  247 (325)
T 3kul_A          173 VHRDLAARNVLVDS--NLVCKVSDFGLSRVLEDDPDAAYT---TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEV  247 (325)
T ss_dssp             ECSCCSGGGEEECT--TCCEEECCCSSCEECC----CCEE---CC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHH
T ss_pred             eCCCCCcceEEECC--CCCEEECCCCcccccccCccceee---ccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999985  889999999999987654221100   0001123457778877766667778999998877665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       248 l  248 (325)
T 3kul_A          248 L  248 (325)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.61  E-value=8.5e-16  Score=164.62  Aligned_cols=181  Identities=17%  Similarity=0.191  Sum_probs=124.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                 .        ..        ...+.+|..
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------~--------~~--------~~~~~~E~~   58 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR-----------------L--------KQ--------VEHTNDERL   58 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T--------TC--------HHHHHHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-----------------h--------hH--------HHHHHHHHH
Confidence            6899999999999999  59999999976521100                 0        00        112234444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+     ++++  |++++.  ......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        59 ~l~~l-----~hp~--Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHr  130 (318)
T 1fot_A           59 MLSIV-----THPF--IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHSKDIIYR  130 (318)
T ss_dssp             HHHSC-----CBTT--BCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             HHhhC-----CCCC--CceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence            44332     2232  233332  3345679999999999999876422 223433332222  3344788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||.||+++.  +|.++|+|||++..++....         ...+++.++++++......+...|++++...+.+++.
T Consensus       131 Dlkp~NIll~~--~g~~kL~Dfg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  198 (318)
T 1fot_A          131 DLKPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA  198 (318)
T ss_dssp             CCCGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CCChheEEEcC--CCCEEEeecCcceecCCccc---------cccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHh
Confidence            99999999985  89999999999988765321         1346788889998877767788899999988777654

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.61  E-value=7.8e-16  Score=166.76  Aligned_cols=188  Identities=16%  Similarity=0.092  Sum_probs=123.1

Q ss_pred             cccccccccEEEEEE-----E--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRAR-----L--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~-----l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+     .  +|+.||||+.++.....+                                       
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~---------------------------------------  111 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEF---------------------------------------  111 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHH---------------------------------------
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHH---------------------------------------
Confidence            579999999999994     2  589999999887533221                                       


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh----hcCCCHHHHHHHHH--HHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD----ELGVDRKRLGRYAV--ESYLEQIL  445 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~----~~g~d~~~la~~lv--~~~L~qI~  445 (760)
                      ..|.+.++++....  ++.+....-+.......+|||||++|++|.++....    ...++...+...+.  -..+..+|
T Consensus       112 ~~e~~~~~~l~~~~--~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH  189 (365)
T 3e7e_A          112 YIGTQLMERLKPSM--QHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH  189 (365)
T ss_dssp             HHHHHHHHHSCGGG--GGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh--hhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence            22333333332111  112211112223456789999999999999976431    22344444433332  23478899


Q ss_pred             hCCccccCCCCCcEEEec---------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          446 SHGFFHADPHPGNIAVDD---------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~---------~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      ..|++|+|+||.|||++.         ..++.++|+|||++..+........    .....+++.++++++..-+..+..
T Consensus       190 ~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~  265 (365)
T 3e7e_A          190 DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTI----FTAKCETSGFQCVEMLSNKPWNYQ  265 (365)
T ss_dssp             TTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEE----ECCSSCTTSCCCHHHHTTCCBSTH
T ss_pred             hCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCce----eeeecCCCCCCChHHhcCCCCCcc
Confidence            999999999999999974         1157899999999976532110000    011246778888998877767788


Q ss_pred             CChHHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFLN  531 (760)
Q Consensus       517 ~D~~al~~~~~~~l~  531 (760)
                      .|++++...+.+++.
T Consensus       266 ~DiwslG~il~ellt  280 (365)
T 3e7e_A          266 IDYFGVAATVYCMLF  280 (365)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHh
Confidence            899999988877764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.61  E-value=5.5e-16  Score=173.93  Aligned_cols=188  Identities=16%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.+...                .....         .        ...+.+|..
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~----------------~~~~~---------~--------~~~~~~E~~  126 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE----------------MLKRA---------E--------TACFREERD  126 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH----------------HHHTT---------T--------TCCHHHHHH
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH----------------hhhHH---------H--------HHHHHHHHH
Confidence            6899999999999999  48999999975410                00000         0        001234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+     +++++.-..-+.......+|||||++|++|.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus       127 il~~~-----~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDL  201 (437)
T 4aw2_A          127 VLVNG-----DSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDI  201 (437)
T ss_dssp             HHHHS-----CTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC-----CCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccc
Confidence            44432     23333222222234556799999999999998764323334444333222  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-----lG~~~~~~D~~al~~~~~~~  529 (760)
                      ||+|||++.  +|.++|+|||++..+.......     .....+++.+++++++.     .+..++..|+++++..+.++
T Consensus       202 Kp~NILl~~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~el  274 (437)
T 4aw2_A          202 KPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM  274 (437)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHH
T ss_pred             CHHHeeEcC--CCCEEEcchhhhhhcccCCCcc-----cccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHH
Confidence            999999985  8999999999998775432110     01124788889998886     34456778999999888776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       275 lt  276 (437)
T 4aw2_A          275 LY  276 (437)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.61  E-value=8.9e-16  Score=166.78  Aligned_cols=187  Identities=14%  Similarity=0.156  Sum_probs=126.9

Q ss_pred             ccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .|+ .+.||.|++|.||+|+.  +|+.||||+.++....                ..         ..        ...+
T Consensus        42 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~----------------~~---------~~--------~~~~   88 (350)
T 1rdq_E           42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVV----------------KL---------KQ--------IEHT   88 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH----------------HT---------TC--------HHHH
T ss_pred             HCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhc----------------cH---------HH--------HHHH
Confidence            443 36899999999999999  5999999997652100                00         00        1123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+|.+.+..+     +++++.-..-+.......++||||++|++|.++.... ..++...+...+  +-..+..+|..|+
T Consensus        89 ~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~i  162 (350)
T 1rdq_E           89 LNEKRILQAV-----NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDL  162 (350)
T ss_dssp             HHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHhC-----CCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            3454444433     2333222222223345679999999999998875422 224443333322  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++.  +|.++|+|||++..+.....         ...+++.+++++++.....++..|++++...+.++
T Consensus       163 vHrDlkp~NIll~~--~g~~kL~DFg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  231 (350)
T 1rdq_E          163 IYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEM  231 (350)
T ss_dssp             ECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             ccccCccceEEECC--CCCEEEcccccceeccCCcc---------cccCCccccCHHHhcCCCCCCcCCEecccHhHhHH
Confidence            99999999999985  88999999999998865421         13467888999988776667788999999887766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       232 l~  233 (350)
T 1rdq_E          232 AA  233 (350)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.61  E-value=1.4e-15  Score=157.82  Aligned_cols=182  Identities=19%  Similarity=0.169  Sum_probs=121.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+..+.....                                 .+....+.+|+.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~e~~   61 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGVEHQLRREVE   61 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTCHHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccccch---------------------------------hhHHHHHHHHHH
Confidence            6899999999999998  58899999875521000                                 011122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++    . +++  +++++.  ......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+
T Consensus        62 ~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~  133 (279)
T 3fdn_A           62 IQSHL----R-HPN--ILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHSKRVIHR  133 (279)
T ss_dssp             HHTTC----C-CTT--BCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTTCEEC
T ss_pred             HHHcC----C-CCC--CcchhheEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCEecc
Confidence            44443    2 233  333332  3445679999999999998865322 234444333322  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+||+++.  ++.++|+|||++.........        ...++..++++++......++..|++++...+.+++.
T Consensus       134 dlkp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  202 (279)
T 3fdn_A          134 DIKPENLLLGS--AGELKIADFGWSVHAPSSRRT--------DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV  202 (279)
T ss_dssp             CCCGGGEEECT--TSCEEECSCCEESCC----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             cCChHhEEEcC--CCCEEEEeccccccCCccccc--------ccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHH
Confidence            99999999985  889999999998766554322        1246677788888877777778899999987766653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.61  E-value=1.7e-15  Score=155.92  Aligned_cols=186  Identities=19%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+.+.......                                .+..+.+.+|+..+
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~--------------------------------~~~~~~~~~e~~~l   60 (271)
T 3dtc_A           13 EIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDI--------------------------------SQTIENVRQEAKLF   60 (271)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEC------------------------------------------CHHHHHHHHHHH
T ss_pred             eeeccCCCeEEEEEEEcCCeEEEEEEecCCcccH--------------------------------HHHHHHHHHHHHHH
Confidence            6899999999999999999999999765321110                                01112344565555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC---ccccC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG---FFHAD  453 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G---ffHaD  453 (760)
                      ..+    . ++++.-..-+.......++||||++|.+|.++..  ...++...+...+  +-..+..+|..|   ++|+|
T Consensus        61 ~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~d  133 (271)
T 3dtc_A           61 AML----K-HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRD  133 (271)
T ss_dssp             HHC----C-CTTBCCEEEEECCC--CEEEEECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSC
T ss_pred             Hhc----C-CCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecC
Confidence            554    2 2332211222233456799999999999988763  2334444443332  223478899999   89999


Q ss_pred             CCCCcEEEecc------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          454 PHPGNIAVDDV------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       454 pHPGNILV~~~------~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      +||+||+++..      .++.++|+|||++..+......        ...+++.+++++....+..++..|++++...+.
T Consensus       134 ikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  205 (271)
T 3dtc_A          134 LKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM--------SAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLW  205 (271)
T ss_dssp             CSGGGEEESSCCSSSCCSSCCEEECCCCC---------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred             CchHHEEEecccccccccCcceEEccCCccccccccccc--------CCCCccceeCHHHhccCCCCchhhHHHHHHHHH
Confidence            99999999741      1568999999999877654332        124677788888887776777789999988776


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       206 ~l~~  209 (271)
T 3dtc_A          206 ELLT  209 (271)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.61  E-value=6.8e-16  Score=162.14  Aligned_cols=215  Identities=12%  Similarity=0.089  Sum_probs=135.5

Q ss_pred             hcCCCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHH
Q 004334          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEY  345 (760)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~  345 (760)
                      +...+.+++.++..+..     .++....+...+.||.|++|.||+|+.+|+.||||+..+.....              
T Consensus         9 ~~~~~~~~~~~l~~~~~-----~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~--------------   69 (307)
T 2nru_A            9 DTRFHSFSFYELKNVTN-----NFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDIT--------------   69 (307)
T ss_dssp             --CCEECCHHHHHHHTT-----TTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSC--------------
T ss_pred             CCCCCcccHHHHHHHHc-----ccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcc--------------
Confidence            34566777776655432     11111112233689999999999999999999999987632110              


Q ss_pred             HhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhh
Q 004334          346 LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD  423 (760)
Q Consensus       346 l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~  423 (760)
                                    .    .+....+.+|+..+.++    . +++  +++++.  ......+++|||++|++|.++....
T Consensus        70 --------------~----~~~~~~~~~E~~~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  124 (307)
T 2nru_A           70 --------------T----EELKQQFDQEIKVMAKC----Q-HEN--LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL  124 (307)
T ss_dssp             --------------T----TTHHHHHHHHHHHHHHC----C-CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTG
T ss_pred             --------------h----HHHHHHHHHHHHHHHhc----C-CCC--eEEEEEEEecCCceEEEEEecCCCcHHHHHHhc
Confidence                          0    01122345666666655    2 233  233332  3345679999999999999876422


Q ss_pred             h--cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcC
Q 004334          424 E--LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD  499 (760)
Q Consensus       424 ~--~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D  499 (760)
                      .  ..++...+...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++...........    .....++
T Consensus       125 ~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~g~  198 (307)
T 2nru_A          125 DGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE--AFTAKISDFGLARASEKFAQTVM----TSRIVGT  198 (307)
T ss_dssp             GGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCTTCEECCSCSSCEE----CSSCCSC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcC--CCcEEEeeccccccccccccccc----ccccCCC
Confidence            2  224444333322  234478899999999999999999985  78999999999887654211100    0012356


Q ss_pred             HHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          500 ADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       500 ~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +.+++++... |..++..|++++...+.+++.
T Consensus       199 ~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~  229 (307)
T 2nru_A          199 TAYMAPEALR-GEITPKSDIYSFGVVLLEIIT  229 (307)
T ss_dssp             GGGCCHHHHT-TEECTHHHHHHHHHHHHHHHH
T ss_pred             cCcCChHHhc-CCCCccchhHHHHHHHHHHHH
Confidence            6677777664 445667899999887776654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.61  E-value=1.3e-15  Score=165.82  Aligned_cols=187  Identities=17%  Similarity=0.098  Sum_probs=124.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..         ..        ...+..|.+
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~----------------~~---------~~--------~~~~~~E~~   72 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI----------------QD---------DD--------VECTMVEKR   72 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHH----------------HT---------TC--------HHHHHHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh----------------cc---------hH--------HHHHHHHHH
Confidence            6899999999999999  4899999997652100                00         00        011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..    ..+++.+.-..-+.......+|||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        73 ~l~~----~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~givHrDl  147 (353)
T 2i0e_A           73 VLAL----PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDL  147 (353)
T ss_dssp             HHTC----TTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHh----cCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccC
Confidence            3322    223443332222233445679999999999998865422 224433333222  233478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  +|.++|+|||++.........      .....+++.+++++++..+..+...|++++...+.+++.
T Consensus       148 kp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  216 (353)
T 2i0e_A          148 KLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  216 (353)
T ss_dssp             CGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcC--CCcEEEEeCCcccccccCCcc------cccccCCccccChhhhcCCCcCCcccccchHHHHHHHHc
Confidence            999999985  899999999999864322110      011346888999998877667778899999988777654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.61  E-value=1.5e-15  Score=165.11  Aligned_cols=188  Identities=13%  Similarity=0.112  Sum_probs=122.9

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+.++.....                                 ......+.+|+
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~E~  113 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENS---------------------------------RSELERLHEAT  113 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTH---------------------------------HHHHHHHHHHH
T ss_pred             eeeccCCCCEEEEEEEECCCCceeEEEEEEeccccc---------------------------------ccHHHHHHHHH
Confidence            36899999999999998  69999999988743211                                 01122345566


Q ss_pred             HHHHHHHHhcCC----CCceeec-eeeeccC----------------CCeEEEEeecCCCchhhhhhhhhcC--CCHH--
Q 004334          376 ANAELFASNFKD----MDYVKVP-TIFWEYT----------------TPQILTMEYVPGIKINRIQSLDELG--VDRK--  430 (760)
Q Consensus       376 ~nl~~f~~~~~~----~~~V~VP-~vy~e~s----------------t~~vLVME~ieG~~L~d~~~l~~~g--~d~~--  430 (760)
                      ..+..+++++.+    ...+.+| .++..-.                ...+|||||++ ++|.++.......  ....  
T Consensus       114 ~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~  192 (371)
T 3q60_A          114 FAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEG  192 (371)
T ss_dssp             HHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhh
Confidence            666666531111    1111122 1221100                23699999999 6898876532221  2222  


Q ss_pred             -----HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004334          431 -----RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  505 (760)
Q Consensus       431 -----~la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~  505 (760)
                           .++.. +-..+..+|..|++|+|+||.|||++.  +|.++|+|||++...+.....         ..+.+.++++
T Consensus       193 ~~vk~~i~~q-i~~aL~~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~~---------~~~t~~y~aP  260 (371)
T 3q60_A          193 ILALHILTAQ-LIRLAANLQSKGLVHGHFTPDNLFIMP--DGRLMLGDVSALWKVGTRGPA---------SSVPVTYAPR  260 (371)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHTTEEETTCSGGGEEECT--TSCEEECCGGGEEETTCEEEG---------GGSCGGGCCH
T ss_pred             hhhHHHHHHH-HHHHHHHHHHCCCccCcCCHHHEEECC--CCCEEEEecceeeecCCCccC---------ccCCcCCcCh
Confidence                 22233 334578899999999999999999985  889999999999988654321         2234778888


Q ss_pred             HHHHc--CCCCCCCChHHHHHHHHHHHH
Q 004334          506 AMVQM--GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       506 ~l~~l--G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ++...  ...++..|++++.-.+.+++.
T Consensus       261 E~~~~~~~~~~~~~DiwSlG~il~ellt  288 (371)
T 3q60_A          261 EFLNASTATFTHALNAWQLGLSIYRVWC  288 (371)
T ss_dssp             HHHTCSEEECCHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCcCccccHHHHHHHHHHHHh
Confidence            88865  445667899999988877654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.60  E-value=1.8e-15  Score=164.34  Aligned_cols=186  Identities=17%  Similarity=0.135  Sum_probs=123.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                .                 ++....+..|..
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~-----------------~~~~~~~~~E~~   69 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL----------------M-----------------DDDVECTMVEKR   69 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH----------------H-----------------TTCHHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhh----------------h-----------------hhhHHHHHHHHH
Confidence            6899999999999999  5999999997652100                0                 000112234444


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+...    .+++++ .+-..+ ......++||||++|++|.++.... ..++.......+  +-..+..+|..|++|+|
T Consensus        70 il~~~----~~hp~iv~l~~~~-~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrD  143 (345)
T 1xjd_A           70 VLSLA----WEHPFLTHMFCTF-QTKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSKGIVYRD  143 (345)
T ss_dssp             HHHHH----TTCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred             HHHhc----CCCCCCCcEEEEE-EeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCC
Confidence            44433    123332 222222 3345679999999999998875422 223433332222  23447889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  +|.++|+|||++.........      .....+++.++++++......+...|+++++..+.+++.
T Consensus       144 lkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  213 (345)
T 1xjd_A          144 LKLDNILLDK--DGHIKIADFGMCKENMLGDAK------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI  213 (345)
T ss_dssp             CCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CChhhEEECC--CCCEEEeEChhhhhcccCCCc------ccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhc
Confidence            9999999985  889999999999865322110      011346788899998876666778899999988777653

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.60  E-value=1.6e-15  Score=168.04  Aligned_cols=187  Identities=14%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+....+..|..
T Consensus        58 ~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~---------------------------------~~~~~~~~~E~~  104 (396)
T 4dc2_A           58 RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVND---------------------------------DEDIDWVQTEKH  104 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-------------------------------------CCHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999999  58999999987532111                                 000012234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +++++.-..-+.......+|||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus       105 il~~~~----~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~givHrDL  179 (396)
T 4dc2_A          105 VFEQAS----NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERGIIYRDL  179 (396)
T ss_dssp             HHHHHT----TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhcC----CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccC
Confidence            444432    2333322222223455679999999999998765422 234433332222  234488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|||++.  +|.++|+|||++.........      .....+++.+++++++.....+...|++++...+.+++.
T Consensus       180 Kp~NILl~~--~g~ikL~DFGla~~~~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~  248 (396)
T 4dc2_A          180 KLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  248 (396)
T ss_dssp             CGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEeecceeeecccCCCc------cccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHh
Confidence            999999986  899999999999863221110      112347888999999877767778899999988877764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.60  E-value=3.8e-15  Score=166.93  Aligned_cols=179  Identities=15%  Similarity=0.160  Sum_probs=126.7

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|.++|+.||||+.+++..                                      .+.+.+|++.+
T Consensus       199 ~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~--------------------------------------~~~~~~E~~~l  240 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------AQAFLAEASVM  240 (450)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEESSCTT--------------------------------------SHHHHHHHHHH
T ss_pred             eeecCcCCeeEEEEEecCCeEEEEEeCCchH--------------------------------------HHHHHHHHHHH
Confidence            6899999999999999999999999876311                                      01234566666


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC-CCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g-~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++    .+..-+.+-.++.+.....++||||++|++|.++....... ++...+...+  +...+..+|..|++|+|+|
T Consensus       241 ~~l----~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk  316 (450)
T 1k9a_A          241 TQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA  316 (450)
T ss_dssp             HTC----CCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             Hhc----cCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            554    33333444444444444689999999999999976543222 3444333332  3344788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.|||++.  ++.++|+|||++.........         ......+++++....+..++..|++++...+.+++
T Consensus       317 p~Nill~~--~~~~kl~DfG~a~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~  380 (450)
T 1k9a_A          317 ARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  380 (450)
T ss_dssp             GGGEEECT--TSCEEECCCTTCEECC---------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HhhEEECC--CCCEEEeeCCCcccccccccC---------CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            99999985  789999999999876543211         13456678888888777777889999998776654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.60  E-value=7.1e-16  Score=166.82  Aligned_cols=186  Identities=15%  Similarity=0.127  Sum_probs=123.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+.....                ..         ..        ...+.+|.+
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~---------~~--------~~~~~~E~~   57 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII----------------AK---------DE--------VAHTVTESR   57 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH----------------HT---------TC--------HHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhh----------------hh---------hH--------HHHHHHHHH
Confidence            6899999999999999  5999999997652100                00         00        112334544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    . ++++.-..-+.......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        58 ~l~~l----~-hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDl  131 (337)
T 1o6l_A           58 VLQNT----R-HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRDVVYRDI  131 (337)
T ss_dssp             HHHSC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhC----C-CCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCcC
Confidence            44432    2 333322222223345679999999999998765422 223433333222  334578899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  +|.++|+|||++.........      .....+++.++++++..-+..++..|++++...+.+++.
T Consensus       132 kp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  200 (337)
T 1o6l_A          132 KLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  200 (337)
T ss_dssp             CGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEeeccchhhcccCCCc------ccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhc
Confidence            999999985  899999999999864322110      011346788888888776667788899999988777654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.60  E-value=2.1e-15  Score=157.81  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=121.5

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|++      +|+.||||+.+..-.+                                    ....+.
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~------------------------------------~~~~~~   59 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEE------------------------------------HLRDFE   59 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHH------------------------------------HHHHHH
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHH------------------------------------HHHHHH
Confidence            6899999999999984      5899999987653211                                    112344


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|++.+.++    .+..-+.+-.++... ....++||||++|++|.++.......++...+...+  +-..+..+|..|+
T Consensus        60 ~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  135 (295)
T 3ugc_A           60 REIEILKSL----QHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY  135 (295)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC----CCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            566655554    222222222222211 234689999999999999765444335544443332  2334788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  +++++|+|||++..++.......   ......+...+++++...-+..++..|++++...+.++
T Consensus       136 vH~Dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  210 (295)
T 3ugc_A          136 IHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEFFK---VKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  210 (295)
T ss_dssp             CCSCCSGGGEEEEE--TTEEEECCCCSCC----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHhhEEEcC--CCeEEEccCcccccccCCcceee---eccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHH
Confidence            99999999999986  78999999999988765432111   01111233446777777766667788999999888777


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       211 ~~  212 (295)
T 3ugc_A          211 FT  212 (295)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.60  E-value=4.6e-15  Score=154.29  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             cccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|+..     +..||||+.+....+                                   +....+.+
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~   65 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSD-----------------------------------SVREKFLQ   65 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSH-----------------------------------HHHHHHHH
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCH-----------------------------------HHHHHHHH
Confidence            68999999999999982     467999987653111                                   11223455


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+-.++  .....++||||++|++|.++.......++...+...+  +-..+..+|..|++|
T Consensus        66 e~~~l~~l----~h~~iv~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H  139 (281)
T 1mp8_A           66 EALTMRQF----DHPHIVKLIGVI--TENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH  139 (281)
T ss_dssp             HHHHHHTC----CCTTBCCEEEEE--CSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCccceEEEEE--ccCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            66665544    222222332332  2356799999999999999775444445555544333  234488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||+||+++.  ++.++|+|||++..+.......     ......++.++++++...+..++..|++++...+.+++
T Consensus       140 ~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell  211 (281)
T 1mp8_A          140 RDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL  211 (281)
T ss_dssp             SCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHEEECC--CCCEEECccccccccCcccccc-----cccCCCcccccChhhcccCCCCCccCchHHHHHHHHHH
Confidence            999999999986  7899999999998876543211     11123345677888877766677789999987776654

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.60  E-value=3.6e-15  Score=152.95  Aligned_cols=183  Identities=13%  Similarity=0.039  Sum_probs=125.3

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|+. +++.||||+.++.....                                     +.+.+|+..
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------~~~~~e~~~   56 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------EDFIEEAEV   56 (267)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTTBCH-------------------------------------HHHHHHHHH
T ss_pred             eEecCCCceeEEEEEecCCCeEEEEEccccCCCH-------------------------------------HHHHHHHHH
Confidence            6899999999999999 78999999987642110                                     123445555


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +.++    . ++++.-..-+.......+++|||++|++|.++........+...+...+  +-..+..+|..|++|+|++
T Consensus        57 l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  131 (267)
T 3t9t_A           57 MMKL----S-HPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA  131 (267)
T ss_dssp             HHTC----C-CTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             HHhC----C-CCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCc
Confidence            5544    2 3332211222233456799999999999999765443334555444333  2234788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++|+|||++..........     .....++..+++++....+..++..|++++...+.+++
T Consensus       132 p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  199 (267)
T 3t9t_A          132 ARNCLVGE--NQVIKVSDFGMTRFVLDDQYTS-----STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF  199 (267)
T ss_dssp             GGGEEECG--GGCEEECCTTGGGGBCCHHHHS-----TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hheEEECC--CCCEEEcccccccccccccccc-----cccccccccccChhhhcCCCccchhchhhhHHHHHHHh
Confidence            99999986  7899999999998776532211     01122345677788777666677789999987766654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.60  E-value=4.7e-15  Score=160.66  Aligned_cols=191  Identities=18%  Similarity=0.200  Sum_probs=128.2

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      .+.+.|..  .+.||.|++|+||+|+.  +|+.||||+........                                 .
T Consensus        51 ~~~~~y~~--~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~---------------------------------~   95 (348)
T 1u5q_A           51 DPEKLFSD--LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------N   95 (348)
T ss_dssp             CHHHHEEE--EEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCH---------------------------------H
T ss_pred             chhhheee--eeEEccCCCEEEEEEEEccCCeEEEEEEEccccccc---------------------------------h
Confidence            44444433  25799999999999998  69999999876532111                                 1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~q  443 (760)
                      +....+.+|++.+.++    .+..-+.+-.++ ......+|||||++| ++.++.......++...+...+  +-..+..
T Consensus        96 ~~~~~~~~E~~~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~g-~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~  169 (348)
T 1u5q_A           96 EKWQDIIKEVRFLQKL----RHPNTIQYRGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVTHGALQGLAY  169 (348)
T ss_dssp             HHHHHHHHHHHHHHHC----CCTTBCCEEEEE-EETTEEEEEEECCSE-EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC----CCCCEeeEEEEE-EECCeEEEEEecCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            1112345666666655    222223333322 334567999999997 5555443333345544443332  2234788


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTT  520 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~  520 (760)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+++...          ..+++.++++++..   -+..++..|++
T Consensus       170 LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~----------~~gt~~y~aPE~~~~~~~~~~~~~~Diw  237 (348)
T 1u5q_A          170 LHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVW  237 (348)
T ss_dssp             HHHTTCBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBCC----------CCSCGGGCCHHHHHTTSSCCBCTHHHHH
T ss_pred             HHhCCeeeCCCCHHHEEECC--CCCEEEeeccCceecCCCCc----------ccCCcceeCHhhhccccCCCCCcHHHHH
Confidence            99999999999999999985  89999999999988765421          24677888888874   35566778999


Q ss_pred             HHHHHHHHHHH
Q 004334          521 AVRRTAQFFLN  531 (760)
Q Consensus       521 al~~~~~~~l~  531 (760)
                      ++...+.+++.
T Consensus       238 slG~il~ell~  248 (348)
T 1u5q_A          238 SLGITCIELAE  248 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99988776653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.60  E-value=5.5e-15  Score=160.16  Aligned_cols=201  Identities=17%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             ccccccccccEEEEEEE-C------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-~------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      .+.||.|++|.||+|++ .      |+.||||+...... ....++.+++.+..                ..        
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~e~~~~~~~~~----------------~~--------   94 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-PLFTELKFYQRAAK----------------PE--------   94 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-HHHHHHHHHHHHCC----------------HH--------
T ss_pred             EEEEecCCCeEEEEeeecCccccccccceEEEEeeccch-hHHHHHHHHHhhhh----------------hH--------
Confidence            36899999999999998 2      47899999876532 22333333322210                00        


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccC------CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYT------TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLE  442 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s------t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~  442 (760)
                      ..+|...+    ..+.+   ..|++++....      ...+|||||+ |.+|.++.......++...+...+.  -..+.
T Consensus        95 ~~~e~~~~----~~l~h---~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~  166 (364)
T 3op5_A           95 QIQKWIRT----RKLKY---LGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILE  166 (364)
T ss_dssp             HHHHHHHH----TTCSC---CCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----hhccC---CCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            11111111    12222   33444443222      2369999999 9999997654434455555444433  23488


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~-~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      .+|..|++|+|+||.|||++...++.++|+|||++..+......... ........+++.++++++..-...++..|+++
T Consensus       167 ~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  246 (364)
T 3op5_A          167 YIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEI  246 (364)
T ss_dssp             HHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHH
T ss_pred             HHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHH
Confidence            89999999999999999998434789999999999887654221000 00001122677888888887666677789999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      +...+.+++.
T Consensus       247 lG~~l~el~~  256 (364)
T 3op5_A          247 LGYCMIQWLT  256 (364)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988777654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.60  E-value=9.3e-16  Score=170.66  Aligned_cols=185  Identities=21%  Similarity=0.225  Sum_probs=123.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+...                .....         +.        ..+.+|..
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~----------------~~~~~---------~~--------~~~~~E~~  121 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE----------------MIKRS---------DS--------AFFWEERD  121 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH----------------HHHTC---------CC--------STHHHHHH
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhh----------------hhhhH---------HH--------HHHHHHHH
Confidence            6899999999999999  58999999975410                00000         00        01234444


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+..+     +++++ .+-..+ ......+|||||++|++|.++...  ..++.......  .+-..+..+|..|++|+|
T Consensus       122 il~~l-----~hp~Iv~l~~~~-~~~~~~~lV~E~~~gg~L~~~l~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrD  193 (410)
T 3v8s_A          122 IMAFA-----NSPWVVQLFYAF-QDDRYLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHSMGFIHRD  193 (410)
T ss_dssp             HHHHC-----CCTTBCCEEEEE-ECSSEEEEEECCCTTEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHhC-----CCCCCCeEEEEE-EECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecc
Confidence            44433     23332 222222 334567999999999999987543  23443333222  233448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~----~~~~~D~~al~~~~~~~  529 (760)
                      +||+|||++.  +|.++|+|||++..+.......     .....+++.+++++++....    .+...|+++++..+.++
T Consensus       194 LKp~NILl~~--~g~ikL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyel  266 (410)
T 3v8s_A          194 VKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM  266 (410)
T ss_dssp             CSGGGEEECT--TSCEEECCCTTCEECCTTSEEE-----CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHH
T ss_pred             CCHHHeeECC--CCCEEEeccceeEeeccCCccc-----ccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHH
Confidence            9999999985  8999999999998876542100     01124788899999887543    45678999999888776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       267 l~  268 (410)
T 3v8s_A          267 LV  268 (410)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.59  E-value=1.4e-15  Score=157.78  Aligned_cols=179  Identities=15%  Similarity=0.153  Sum_probs=115.9

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+.++...                                      .+.+.+|++.+
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~--------------------------------------~~~~~~E~~~l   68 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------AQAFLAEASVM   68 (278)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------HHHHHTHHHH
T ss_pred             eEEecCCCceEEEEEEcCCEEEEEEecchhH--------------------------------------HHHHHHHHHHH
Confidence            6899999999999999999999998765310                                      01233454444


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++    .+..-+.+..++.+.....++||||++|++|.++...... .++...+...+  +-..+..+|..|++|+|+|
T Consensus        69 ~~l----~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  144 (278)
T 1byg_A           69 TQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA  144 (278)
T ss_dssp             TTC----CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             HhC----CCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence            443    2333334444333334467999999999999987643221 13333333322  2344788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++|+|||++...+.....         ...+..+++++...-+..++..|++++...+.+++
T Consensus       145 p~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  208 (278)
T 1byg_A          145 ARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  208 (278)
T ss_dssp             GGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEeC--CCcEEEeeccccccccccccC---------CCccccccCHHHhCCCCCCchhcHHHHHHHHHHHH
Confidence            99999985  789999999998876543221         12355677777776666677789999987776654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.59  E-value=1.9e-15  Score=160.97  Aligned_cols=186  Identities=18%  Similarity=0.114  Sum_probs=124.3

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+..       |+.||||+.++....                                   +....+
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~~~~~~   97 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASA-----------------------------------DMQADF   97 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCH-----------------------------------HHHHHH
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCH-----------------------------------HHHHHH
Confidence            68999999999999984       389999998764221                                   112234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-----------------------cCCC
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------------LGVD  428 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-----------------------~g~d  428 (760)
                      .+|+..+.++    .+..-+.+-.++ ......++||||++|++|.++.....                       ..++
T Consensus        98 ~~E~~~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (343)
T 1luf_A           98 QREAALMAEF----DNPNIVKLLGVC-AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS  172 (343)
T ss_dssp             HHHHHHHHTC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCC
T ss_pred             HHHHHHHHhC----CCCCEEEEEEEE-ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCC
Confidence            5666666655    222222222222 33566799999999999998764321                       2233


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          429 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       429 ~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      ...+...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....++..+++++
T Consensus       173 ~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~t~~y~aPE  246 (343)
T 1luf_A          173 CAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPIRWMPPE  246 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECC--CCeEEEeecCCCcccccCccccc----cCCCcccceecChh
Confidence            33333222  233478899999999999999999986  78999999999987654321100    11123456677888


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +...+..++..|++++...+.+++
T Consensus       247 ~~~~~~~~~~~Di~slG~il~el~  270 (343)
T 1luf_A          247 SIFYNRYTTESDVWAYGVVLWEIF  270 (343)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhccCCcCcccccHHHHHHHHHHH
Confidence            877777777889999988776665

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.59  E-value=9.6e-16  Score=162.71  Aligned_cols=191  Identities=15%  Similarity=0.132  Sum_probs=126.5

Q ss_pred             hhcccC-ccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          292 VFERFD-VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       292 iF~~fd-~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      ....|+ ...||.|++|.||+|++ +|+.||||+..+.-...                                    ..
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~------------------------------------~~   80 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQG------------------------------------IE   80 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSH------------------------------------HH
T ss_pred             HHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHH------------------------------------HH
Confidence            334554 36899999999999999 69999999877642211                                    01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHH--HHHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLE  442 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~L~  442 (760)
                      .+.+|+..+.++    . +++  +++++.  ......++||||++|++|.++.....   ..++...+...+  +-..+.
T Consensus        81 ~~~~E~~~l~~l----~-h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~  153 (321)
T 2qkw_B           81 EFETEIETLSFC----R-HPH--LVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH  153 (321)
T ss_dssp             HHHHHHHGGGSC----C-CTT--BCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC----C-CCC--EeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHH
Confidence            233444444333    2 233  333332  33456799999999999998753221   123444333332  223478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++...........    .....++..++++++..-+..++..|++++
T Consensus       154 ~lH~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  227 (321)
T 2qkw_B          154 YLHTRAIIHRDVKSINILLDE--NFVPKITDFGISKKGTELDQTHL----STVVKGTLGYIDPEYFIKGRLTEKSDVYSF  227 (321)
T ss_dssp             HHHHTTEECSCCCSTTEEECT--TCCEEECCCTTCEECSSSSCCCC----BCCCEEETTTCCHHHHHHCBCCTHHHHHHH
T ss_pred             HhcCCCeecCCCCHHHEEECC--CCCEEEeeccccccccccccccc----ccccCCCccccCHHHhcCCCCCcccchHhH
Confidence            899999999999999999985  88999999999986543211100    011234566777887776777788899999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      ...+.+++.
T Consensus       228 G~il~ell~  236 (321)
T 2qkw_B          228 GVVLFEVLC  236 (321)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988776653

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.59  E-value=3.4e-15  Score=158.52  Aligned_cols=193  Identities=15%  Similarity=0.220  Sum_probs=124.2

Q ss_pred             hhhcccC-ccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      .+...|. .+.||.|++|.||+|+. +|+.||||+.+.....                                  ....
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~----------------------------------~~~~   63 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED----------------------------------EGIP   63 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC----------------------------------------CHH
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc----------------------------------chhh
Confidence            3445554 37899999999999999 7999999987653111                                  0111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  446 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~  446 (760)
                      ..+.+|++.+.++    .+..-+.+-.++ ......++||||++| .+.+.......+++...+...+  +-..+..+|.
T Consensus        64 ~~~~~E~~~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~  137 (311)
T 3niz_A           64 STAIREISLLKEL----HHPNIVSLIDVI-HSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ  137 (311)
T ss_dssp             HHHHHHHHHHHHC----CCTTBCCEEEEE-CCSSCEEEEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCCEeeeeeEE-ccCCEEEEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2344566666655    222222222222 334567999999997 5555443333345544443332  2334788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  525 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~  525 (760)
                      .|++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++..- ...+...|++++...
T Consensus       138 ~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  209 (311)
T 3niz_A          138 HRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSY------THEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCI  209 (311)
T ss_dssp             TTEECCCCCGGGEEECT--TCCEEECCCTTCEETTSCCC---------CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHH
T ss_pred             CCcccCCCchHhEEECC--CCCEEEccCcCceecCCCcccc------cCCcccCCcCCHHHhcCCCCCCchHHhHHHHHH
Confidence            99999999999999986  7899999999998875432211      11234666777877643 345667799999987


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       210 l~~ll~  215 (311)
T 3niz_A          210 FAEMIT  215 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.59  E-value=7.7e-15  Score=162.22  Aligned_cols=175  Identities=17%  Similarity=0.233  Sum_probs=115.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhh--HHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~--i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+||+|++|.||+|.. +|+.||||+.+++....  +..+-           .+.  ......+|..+   .......|.
T Consensus       101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r-----------~~~--~~~~~~~~~~~---~rl~A~kE~  164 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANR-----------DYL--RNRSTGSWMYL---SRLAAIKEF  164 (397)
T ss_dssp             EEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--C-----------EEC--TTSCHHHHHHH---HHHHHHHHH
T ss_pred             CEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHH-----------HHH--HhhccccHHHH---HHHHHHHHH
Confidence            5899999999999998 79999999998864321  00000           000  00001122221   122235689


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      +|+.++...     .+.+|.+|.  ....+||||||+|.++.++...    .+...+...++. .+..+|.+|++|||+|
T Consensus       165 ~nL~rL~~~-----gv~vp~p~~--~~~~~LVME~i~G~~L~~l~~~----~~~~~l~~qll~-~l~~lH~~gIVHrDLK  232 (397)
T 4gyi_A          165 AFMKALYEE-----GFPVPEPIA--QSRHTIVMSLVDALPMRQVSSV----PDPASLYADLIA-LILRLAKHGLIHGDFN  232 (397)
T ss_dssp             HHHHHHHHT-----TCSCCCEEE--EETTEEEEECCSCEEGGGCCCC----SCHHHHHHHHHH-HHHHHHHTTEECSCCS
T ss_pred             HHHHHHHhc-----CCCCCeeee--ccCceEEEEecCCccHhhhccc----HHHHHHHHHHHH-HHHHHHHCCCcCCCCC
Confidence            999998653     467888874  3456999999999998775422    244556555544 4678899999999999


Q ss_pred             CCcEEEeccCCC--------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004334          456 PGNIAVDDVNGG--------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       456 PGNILV~~~~~g--------~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~  508 (760)
                      |.|||+++..++        .+++|||+.+...+...-..|       +.+|...+...+.
T Consensus       233 p~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~hp~a~~~-------l~RDv~ni~~fF~  286 (397)
T 4gyi_A          233 EFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDHPNAEMY-------FDRDVQCIKRFFE  286 (397)
T ss_dssp             TTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHEEEeCCCCcccccccccceEEEEeCCcccCCCCChHHH-------HHHHHHHHHHHHH
Confidence            999999862111        489999999887765432222       3456666655554

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.59  E-value=5.4e-15  Score=159.22  Aligned_cols=184  Identities=15%  Similarity=0.103  Sum_probs=125.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..-                                     ........|+.
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~~~~~e~~   83 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-------------------------------------KYTRSAKIEAD   83 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCH-------------------------------------HHHHHHHHHHH
T ss_pred             EEEcccCCeEEEEEEECCCCeEEEEEEeccch-------------------------------------hhhhhhHHHHH
Confidence            6899999999999999  68999999976410                                     11112234555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .++++.....++++  |++++.  ......+|||||+ |.+|.++..... .+++...+...+  +-..+..+|..|++|
T Consensus        84 ~l~~l~~~~~~h~~--iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH  160 (360)
T 3llt_A           84 ILKKIQNDDINNNN--IVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTH  160 (360)
T ss_dssp             HHHHTCCCSTTGGG--BCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHhcccCCCCCC--eecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeee
Confidence            55555321111222  333332  3446679999999 889988764332 234544443332  233488899999999


Q ss_pred             cCCCCCcEEEec-----------------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004334          452 ADPHPGNIAVDD-----------------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       452 aDpHPGNILV~~-----------------------~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~  508 (760)
                      +|+||+|||++.                       ..++.++|+|||++...+....         -..+++.++++++.
T Consensus       161 rDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~  231 (360)
T 3llt_A          161 TDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHG---------SIINTRQYRAPEVI  231 (360)
T ss_dssp             SCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCC---------SCCSCGGGCCHHHH
T ss_pred             CCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCc---------CccCcccccCcHHH
Confidence            999999999963                       1367899999999987654321         12457788888888


Q ss_pred             HcCCCCCCCChHHHHHHHHHHHH
Q 004334          509 QMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       509 ~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      .-+..++..|++++.-.+.+++.
T Consensus       232 ~~~~~~~~~DiwslG~il~ell~  254 (360)
T 3llt_A          232 LNLGWDVSSDMWSFGCVLAELYT  254 (360)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccchHHHHHHHHHHHH
Confidence            77777888999999987776653

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.59  E-value=6.3e-15  Score=153.19  Aligned_cols=180  Identities=13%  Similarity=0.104  Sum_probs=121.3

Q ss_pred             cccccccccEEEEEEE--CC-------eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KG-------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G-------~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +.||.|++|.||+|+.  +|       ..||+|+....-..                                    ...
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~------------------------------------~~~   57 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRN------------------------------------YSE   57 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGG------------------------------------GHH
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccccHH------------------------------------HHH
Confidence            6899999999999998  34       57999987552111                                    012


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.+|+..+.++    .+..-+.+-.++ ......++||||++|++|.++........+...+...+  +-..+..+|..
T Consensus        58 ~~~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~  132 (289)
T 4fvq_A           58 SFFEAASMMSKL----SHKHLVLNYGVC-VCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN  132 (289)
T ss_dssp             HHHHHHHHHHTS----CCTTBCCEEEEE-CCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----CCCCEeEEEEEE-EeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            234555555544    222222222222 33456799999999999999765443335544433332  23348889999


Q ss_pred             CccccCCCCCcEEEeccCCCc--------EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004334          448 GFFHADPHPGNIAVDDVNGGR--------LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  518 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~--------l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D  518 (760)
                      |++|+|+||+||+++.  ++.        ++|+|||++....+...          ..++..++++++..- +..++..|
T Consensus       133 ~ivH~Dlkp~NIll~~--~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~D  200 (289)
T 4fvq_A          133 TLIHGNVCAKNILLIR--EEDRKTGNPPFIKLSDPGISITVLPKDI----------LQERIPWVPPECIENPKNLNLATD  200 (289)
T ss_dssp             TCCCCCCCGGGEEEEE--CCBGGGTBCCEEEECCCCSCTTTSCHHH----------HHHTTTTSCHHHHHCGGGCCHHHH
T ss_pred             CeECCCcCcceEEEec--CCcccccccceeeeccCcccccccCccc----------cCCcCcccCHHHhCCCCCCCchhH
Confidence            9999999999999986  554        99999999987765432          123455777777765 55566789


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++...+.+++.
T Consensus       201 iwslG~il~el~~  213 (289)
T 4fvq_A          201 KWSFGTTLWEICS  213 (289)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999887766653

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.59  E-value=5.3e-15  Score=156.58  Aligned_cols=177  Identities=16%  Similarity=0.194  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+....-                                      ....+.+|++.+
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--------------------------------------~~~~~~~E~~~l   55 (307)
T 2eva_A           14 EVVGRGAFGVVCKAKWRAKDVAIKQIESES--------------------------------------ERKAFIVELRQL   55 (307)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEECSSTT--------------------------------------HHHHHHHHHHHH
T ss_pred             eEeecCCCceEEEEEECCeeEEEEEecChh--------------------------------------HHHHHHHHHHHH
Confidence            689999999999999999999999875421                                      011234565555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHHh---CCccc
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQILS---HGFFH  451 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~L~qI~~---~GffH  451 (760)
                      .++     +++  .|.+++..+.+..++||||++|++|.++......  ..+...+...+  +...+..+|.   .|++|
T Consensus        56 ~~l-----~hp--~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH  128 (307)
T 2eva_A           56 SRV-----NHP--NIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIH  128 (307)
T ss_dssp             HHC-----CCT--TBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCC
T ss_pred             hcC-----CCC--CcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeec
Confidence            554     222  2455565556778999999999999987643221  23334333322  2234778898   89999


Q ss_pred             cCCCCCcEEEeccCCCc-EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~-l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++. ++|+|||++..+......         ..++..++++++...+..++..|++++...+.+++
T Consensus       129 ~dlkp~NIll~~--~~~~~kl~Dfg~~~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~  197 (307)
T 2eva_A          129 RDLKPPNLLLVA--GGTVLKICDFGTACDIQTHMTN---------NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVI  197 (307)
T ss_dssp             CCCSGGGEEEET--TTTEEEECCCCC---------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHH
T ss_pred             CCCChhHEEEeC--CCCEEEEccccccccccccccc---------CCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999985  555 899999999876543221         23677788888887776777889999998877665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       198 ~  198 (307)
T 2eva_A          198 T  198 (307)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.59  E-value=5e-15  Score=161.64  Aligned_cols=185  Identities=15%  Similarity=0.109  Sum_probs=123.9

Q ss_pred             cccccccccEEEEEEE---------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +.||.|++|+||+|+.         +|..||||+.++...+.                                   ...
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~  131 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK-----------------------------------DLS  131 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHH-----------------------------------HHH
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHH-----------------------------------HHH
Confidence            6899999999999986         24679999987642211                                   111


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRL  432 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~l  432 (760)
                      .+.+|++.+.++.    ++++  |++++.  ......++||||++|++|.++.....               ..++...+
T Consensus       132 ~~~~E~~~l~~l~----~hpn--Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (370)
T 2psq_A          132 DLVSEMEMMKMIG----KHKN--IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL  205 (370)
T ss_dssp             HHHHHHHHHHHSC----CCTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHH
T ss_pred             HHHHHHHHHHHhc----CCCC--EeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHH
Confidence            2445666555542    2333  233332  33456799999999999998764322               12333333


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004334          433 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       433 a~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l  510 (760)
                      ...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-    .....+.+.++++++..-
T Consensus       206 ~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~  279 (370)
T 2psq_A          206 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPEALFD  279 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCSSCEETTCCCTTCT----TTTTTSCGGGCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCeeccccchhhEEECC--CCCEEEccccCCcccCcccceec----ccCCCcccceECHhHhcC
Confidence            3332  233478899999999999999999985  88999999999987754321100    011234556888888877


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      +..++..|++++...+.+++
T Consensus       280 ~~~~~~~DvwslG~il~ell  299 (370)
T 2psq_A          280 RVYTHQSDVWSFGVLMWEIF  299 (370)
T ss_dssp             CCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHH
Confidence            66677789999988776654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.59  E-value=4e-15  Score=161.01  Aligned_cols=182  Identities=15%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                                      +.+.+|+.
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------------------------------------~~~~~E~~  100 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK--------------------------------------KIVRTEIG  100 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC------------------------------------------------CH
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccchhH--------------------------------------HHHHHHHH
Confidence            6899999999999999  4889999998753110                                      11234555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus       101 ~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Di  174 (349)
T 2w4o_A          101 VLLRL----SHPNIIKLKEIF-ETPTEISLVLELVTGGELFDRIVEK-GYYSERDAADAVKQILEAVAYLHENGIVHRDL  174 (349)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHhC----CCCCCcceeeeE-ecCCeEEEEEEeCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCC
Confidence            55544    222222222222 3456679999999999998865322 223444333332  223478899999999999


Q ss_pred             CCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++. .+++.++|+|||++..+.....       .....+++.++++++..-+..++..|++++...+.+++.
T Consensus       175 kp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  245 (349)
T 2w4o_A          175 KPENLLYATPAPDAPLKIADFGLSKIVEHQVL-------MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLC  245 (349)
T ss_dssp             CGGGEEESSSSTTCCEEECCCC-----------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CcccEEEecCCCCCCEEEccCccccccCcccc-------cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHh
Confidence            999999973 2368899999999987754321       112346778888888877767788899999988776654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.59  E-value=5.2e-15  Score=160.37  Aligned_cols=185  Identities=12%  Similarity=0.044  Sum_probs=126.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-                                     .....+.+|++
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~~~~~E~~   85 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-------------------------------------HYTETALDEIR   85 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCH-------------------------------------HHHHHHHHHHH
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEecCC-------------------------------------cchHHHHHHHH
Confidence            6799999999999998  59999999986531                                     11123456777


Q ss_pred             HHHHHHHhcCCCC-ceeeceeeecc------CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMD-YVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~-~V~VP~vy~e~------st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++++....++ ...+.+++..+      ....+|||||+.|..+..+......+++...+...+  +-..+..+|..
T Consensus        86 ~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~  165 (397)
T 1wak_A           86 LLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTK  165 (397)
T ss_dssp             HHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            7777765322211 22344444322      245799999996665555543332345544443333  22347889998


Q ss_pred             -CccccCCCCCcEEEeccCCC-------------------------------------------------cEEEEeecce
Q 004334          448 -GFFHADPHPGNIAVDDVNGG-------------------------------------------------RLIFYDFGMM  477 (760)
Q Consensus       448 -GffHaDpHPGNILV~~~~~g-------------------------------------------------~l~LiDFG~v  477 (760)
                       |++|+|+||+|||++.  ++                                                 .++|+|||++
T Consensus       166 ~givHrDikp~NIll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a  243 (397)
T 1wak_A          166 CRIIHTDIKPENILLSV--NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNA  243 (397)
T ss_dssp             TCEECCCCSGGGEEECC--CHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGC
T ss_pred             CCEecCCCCHHHeeEec--cchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccc
Confidence             9999999999999974  33                                                 7999999999


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          478 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       478 ~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..+......         ..++..++++++..-+..+...|++++.-.+.+++.
T Consensus       244 ~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt  288 (397)
T 1wak_A          244 CWVHKHFTE---------DIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELAT  288 (397)
T ss_dssp             EETTBCSCS---------CCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcc---------CCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhh
Confidence            887654221         235777888888877767778899999988777654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.59  E-value=4.3e-15  Score=172.16  Aligned_cols=186  Identities=15%  Similarity=0.126  Sum_probs=128.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..                 .....+.+|.+
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~----------------~~-----------------~~~~~~~~E~~  236 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK----------------KR-----------------KGEAMALNEKQ  236 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH----------------HT-----------------TCHHHHHHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhh----------------hh-----------------HHHHHHHHHHH
Confidence            5899999999999999  5999999987541000                00                 00112345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++     +++++.-..-+.......+|||||++|++|.+..... ..+++...+...+  +-..+..+|..|++|+|
T Consensus       237 iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrD  311 (576)
T 2acx_A          237 ILEKV-----NSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRD  311 (576)
T ss_dssp             HHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHc-----CCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccC
Confidence            66554     2233222222223345679999999999998865432 2234544433332  23447889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.|||++.  +|.++|+|||++..+......       .-..+++.+++++++..+..+...|+++++..+.+++.
T Consensus       312 LKPeNILld~--~g~vKL~DFGla~~~~~~~~~-------~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLlt  380 (576)
T 2acx_A          312 LKPENILLDD--HGHIRISDLGLAVHVPEGQTI-------KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA  380 (576)
T ss_dssp             CCGGGEEECT--TSCEEECCCTTCEECCTTCCE-------ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHH
T ss_pred             CchheEEEeC--CCCeEEEecccceecccCccc-------cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHh
Confidence            9999999985  899999999999988654211       11247888999998877666778899999988877664

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.59  E-value=4.3e-15  Score=158.92  Aligned_cols=187  Identities=17%  Similarity=0.163  Sum_probs=127.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                     . .....        ...+.+|+.
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------~-~~~~~--------~~~~~~E~~   66 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS---------------------S-RRGVS--------REDIEREVS   66 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTT---------------------C-SSSBC--------HHHHHHHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEcccccc---------------------c-cchhh--------HHHHHHHHH
Confidence            6899999999999999  59999999876532111                     0 00001        122445666


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.     ++++ .+-.++ ......++||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|
T Consensus        67 ~l~~l~-----hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~D  139 (326)
T 2y0a_A           67 ILKEIQ-----HPNVITLHEVY-ENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQIAHFD  139 (326)
T ss_dssp             HHHHCC-----CTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHhCC-----CCCCCcEEEEE-EeCCEEEEEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCC
Confidence            666552     3332 222222 345667999999999999987642 2234444443332  22347889999999999


Q ss_pred             CCCCcEEEeccCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       454 pHPGNILV~~~~~g----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +||.||+++.  ++    .++|+|||++..++.....       .-..+++.++++++...+..++..|++++...+.++
T Consensus       140 lkp~NIll~~--~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l  210 (326)
T 2y0a_A          140 LKPENIMLLD--RNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  210 (326)
T ss_dssp             CCGGGEEESC--SSSSSCCEEECCCTTCEECCTTSCC-------CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEec--CCCCCCCEEEEECCCCeECCCCCcc-------ccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHH
Confidence            9999999975  44    7999999999887643210       112467788889888777777788999999877766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       211 l~  212 (326)
T 2y0a_A          211 LS  212 (326)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.58  E-value=6.7e-15  Score=156.07  Aligned_cols=183  Identities=19%  Similarity=0.195  Sum_probs=117.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|++  +|+.||||+..........                                 . .....|..
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~---------------------------------~-~~~~~e~~  108 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKD---------------------------------R-ARKLAEVG  108 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHH---------------------------------H-HHHHHHHH
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEecccccChHH---------------------------------H-HHHHHHHH
Confidence            6899999999999999  5999999987653222100                                 0 00112222


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.+.   . +++++ .+-. +.......+|||||+.| ++.+........++...+...+  +...+..+|..|++|+|
T Consensus       109 ~~~~~---~-~h~~iv~l~~-~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~D  182 (311)
T 3p1a_A          109 SHEKV---G-QHPCCVRLEQ-AWEEGGILYLQTELCGP-SLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLD  182 (311)
T ss_dssp             HHHHH---C-CCTTBCCEEE-EEEETTEEEEEEECCCC-BHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHh---c-CCCcEEEEEE-EEEeCCEEEEEEeccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCC
Confidence            22222   2 23332 2222 23445667999999954 7766544333335544443332  23348889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++..++.....       ....+++.++++++.. |..++..|++++...+.+++.
T Consensus       183 ikp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~el~~  250 (311)
T 3p1a_A          183 VKPANIFLGP--RGRCKLGDFGLLVELGTAGAG-------EVQEGDPRYMAPELLQ-GSYGTAADVFSLGLTILEVAC  250 (311)
T ss_dssp             CSGGGEEECG--GGCEEECCCTTCEECC-------------CCCCCGGGCCGGGGG-TCCSTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEECC--CCCEEEccceeeeecccCCCC-------cccCCCccccCHhHhc-CCCCchhhHHHHHHHHHHHHh
Confidence            9999999986  789999999999887654321       1224677778888765 456677899999987766653

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.58  E-value=6.6e-16  Score=168.76  Aligned_cols=186  Identities=19%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.++.....                                   ....+.+|++
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~E~~  164 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPD-----------------------------------LKAKFLQEAR  164 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHH-----------------------------------HHTTTTHHHH
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEccccCCHH-----------------------------------HHHHHHHHHH
Confidence            6899999999999999  58999999987643211                                   1112334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.++.......++...+...+  +...+..+|..|++|+|+
T Consensus       165 ~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDl  239 (377)
T 3cbl_A          165 ILKQY----SHPNIVRLIGVC-TQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDL  239 (377)
T ss_dssp             HHTTC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhC----CCCCEEEEEEEE-ecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCccc
Confidence            55544    222222222222 23456799999999999998765443335555444433  234488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++.++|+|||++....+......    .+.......+++++....+..++..|++++...+.+++
T Consensus       240 kp~Nil~~~--~~~~kl~DfG~s~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~  309 (377)
T 3cbl_A          240 AARNCLVTE--KNVLKISDFGMSREEADGVYAAS----GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETF  309 (377)
T ss_dssp             SGGGEEECT--TCCEEECCGGGCEECTTSEEECC----SSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcC--CCcEEECcCCCceecCCCceeec----CCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHH
Confidence            999999985  78999999999987654311000    00011234577788877777777889999988776654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.58  E-value=4.9e-15  Score=156.81  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=118.9

Q ss_pred             hhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      ..+..|. .+.||.|++|+||+|+.  +|+.||||+.++.....                                 .+.
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~   77 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD---------------------------------PVF   77 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS---------------------------------HHH
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC---------------------------------HHH
Confidence            3445554 37899999999999998  59999999976532111                                 112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      ...+.+|+..+.++    .+..-+.+-.++ ......+++|||++|.+|.++.... ..++...+...+  +-..+..+|
T Consensus        78 ~~~~~~e~~~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH  151 (309)
T 2h34_A           78 RTRMQREARTAGRL----QEPHVVPIHDFG-EIDGQLYVDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAH  151 (309)
T ss_dssp             HHHHHHHHHHHTTC----CCTTBCCEEEEE-EETTEEEEEEECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc----CCCCeeEEEEEE-eeCCeEEEEEEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            22344555555444    222222222222 3356679999999999999876432 234444433332  223478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      ..|++|+|+||.||+++.  ++.++|+|||++...........     ....++..++++++..-+..++..|++++...
T Consensus       152 ~~~i~H~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  224 (309)
T 2h34_A          152 AAGATHRDVKPENILVSA--DDFAYLVDFGIASATTDEKLTQL-----GNTVGTLYYMAPERFSESHATYRADIYALTCV  224 (309)
T ss_dssp             HTTCCCSCCCGGGEEECT--TSCEEECSCCC---------------------CCGGGCCGGGTCC----CCCHHHHHHHH
T ss_pred             HCcCCcCCCChHHEEEcC--CCCEEEecCccCccccccccccc-----cccCCCcCccCHHHHcCCCCCchHhHHHHHHH
Confidence            999999999999999985  78999999999987765432211     11235666777777666666778899999987


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       225 l~~l~~  230 (309)
T 2h34_A          225 LYECLT  230 (309)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.58  E-value=6.7e-15  Score=157.53  Aligned_cols=186  Identities=14%  Similarity=0.118  Sum_probs=118.5

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|+.     +|+.||||+.+......-.                                .....+.+
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~--------------------------------~~~~~~~~   70 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNA--------------------------------KDTAHTKA   70 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC----------------------------------------------
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhh--------------------------------hHHHHHHH
Confidence            6899999999999997     4899999998764211000                                00112344


Q ss_pred             HHHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          374 EAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      |...+.++    . ++++ .+-.+ .......++||||++|++|.++.... ..+....+...+  +-..+..+|..|++
T Consensus        71 E~~~l~~l----~-hp~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~~iv  143 (327)
T 3a62_A           71 ERNILEEV----K-HPFIVDLIYA-FQTGGKLYLILEYLSGGELFMQLERE-GIFMEDTACFYLAEISMALGHLHQKGII  143 (327)
T ss_dssp             HHHHHHHC----C-CTTBCCEEEE-EECSSCEEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhC----C-CCCccceeEE-EEcCCEEEEEEeCCCCCcHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            55555554    2 2332 22222 23456779999999999998865422 223333333222  23447889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  +|.++|+|||++.........      .....+++.++++++...+..+...|++++...+.+++
T Consensus       144 H~Dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~  215 (327)
T 3a62_A          144 YRDLKPENIMLNH--QGHVKLTDFGLCKESIHDGTV------THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDML  215 (327)
T ss_dssp             CCCCCTTTEEECT--TSCEEECCCSCC----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHeEECC--CCcEEEEeCCcccccccCCcc------ccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHH
Confidence            9999999999985  889999999998765432210      11234677788888887666677789999998777665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       216 ~  216 (327)
T 3a62_A          216 T  216 (327)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.58  E-value=8.4e-15  Score=154.08  Aligned_cols=185  Identities=16%  Similarity=0.146  Sum_probs=120.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.......                                  .+....+.+|++
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------------------------~~~~~~~~~E~~   54 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDD----------------------------------PVIKKIALREIR   54 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-----------------------------------HHHHHHHHHHHH
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeeccccc----------------------------------hHHHHHHHHHHH
Confidence            6899999999999999  5999999987553211                                  112223455666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+-.++ ......++||||++|..+.++.... .+.+...+....  +-..+..+|..|++|+|+
T Consensus        55 ~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dl  128 (311)
T 4agu_A           55 MLKQLK----HPNLVNLLEVF-RRKRRLHLVFEYCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDV  128 (311)
T ss_dssp             HHHHCC----CTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhCC----CCCccchhhee-ecCCeEEEEEEeCCCchHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence            666552    22222233332 3345679999999999988865422 234443333222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++..++......      ....++..++++++... ...++..|++++...+.+++.
T Consensus       129 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  198 (311)
T 4agu_A          129 KPENILITK--HSVIKLCDFGFARLLTGPSDYY------DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLS  198 (311)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECC------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEEcC--CCCEEEeeCCCchhccCccccc------CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHh
Confidence            999999985  7899999999998876443211      11124555667776654 445677899999987776654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.58  E-value=1.2e-14  Score=150.82  Aligned_cols=185  Identities=15%  Similarity=0.084  Sum_probs=124.5

Q ss_pred             ccccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      .+.||.|++|+||+|+..     +..||||+.++....                                   +....+.
T Consensus        17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~~~~~~~   61 (281)
T 3cc6_A           17 NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTL-----------------------------------DNKEKFM   61 (281)
T ss_dssp             EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCH-----------------------------------HHHHHHH
T ss_pred             EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCc-----------------------------------hHHHHHH
Confidence            368999999999999972     356999998764211                                   1112345


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|+..+.++.    +..-+.+-.++.  ....+++|||++|.+|.++.......++...+...+  +-..+..+|..|++
T Consensus        62 ~E~~~l~~l~----h~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~  135 (281)
T 3cc6_A           62 SEAVIMKNLD----HPHIVKLIGIIE--EEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCV  135 (281)
T ss_dssp             HHHHHHHHHC----CTTBCCEEEEEC--SSSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCC----CCCcceEEEEEc--CCCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            6777777662    222233333332  345699999999999999765444345554444332  23447889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  ++.++|+|||++..+.......     .....++..++++++...+..++..|++++...+.+++
T Consensus       136 H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll  208 (281)
T 3cc6_A          136 HRDIAVRNILVAS--PECVKLGDFGLSRYIEDEDYYK-----ASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEIL  208 (281)
T ss_dssp             CCCCSGGGEEEEE--TTEEEECCCCGGGCC--------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEECC--CCcEEeCccCCCcccccccccc-----cccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHH
Confidence            9999999999986  7899999999998876543211     11223455678888877776677789999988776655

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.58  E-value=4.3e-15  Score=166.57  Aligned_cols=182  Identities=17%  Similarity=0.182  Sum_probs=127.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|++ +++.||||+.+++...                                     .+.+.+|++.
T Consensus       194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~-------------------------------------~~~~~~E~~~  236 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-------------------------------------VEAFLAEANV  236 (454)
T ss_dssp             EEEECCSSEEEEEEEETTTEEEEEEEECTTSBC-------------------------------------HHHHHHHHHH
T ss_pred             EEcccCCceEEEEEEECCccEEEEEEecCCCcc-------------------------------------HHHHHHHHHH
Confidence            6899999999999999 5899999998874211                                     0123456665


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+..-+.+..++.  ....++||||++|++|.++.... ....+...+...+  +...+..+|..|++|+|+
T Consensus       237 l~~l----~h~~iv~l~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDl  310 (454)
T 1qcf_A          237 MKTL----QHDKLVKLHAVVT--KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL  310 (454)
T ss_dssp             HTTC----CCTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HhhC----CCCCEeeEEEEEe--CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCC
Confidence            5544    3333344433332  45679999999999999976432 2234444433322  334478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+.......     .........+++++.+..+..+...|++++...+.+++
T Consensus       311 kp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~  379 (454)
T 1qcf_A          311 RAANILVSA--SLVCKIADFGLARVIEDNEYTA-----REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV  379 (454)
T ss_dssp             SGGGEEECT--TCCEEECSTTGGGGBCCHHHHT-----TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCcEEEeeCCCceEcCCCceec-----cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHH
Confidence            999999985  7899999999999886543211     01112345688888888777778889999988776654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.58  E-value=1.2e-15  Score=170.38  Aligned_cols=186  Identities=13%  Similarity=0.095  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                 .+....+.+|++
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~  200 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA---------------------------------KDEVAHTLTENR  200 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC----------------------------------------------
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh---------------------------------hHHHHHHHHHHH
Confidence            6899999999999998  69999999976521100                                 000011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+..    +.+..-+.+-..+ ......+|||||++|++|.+..... ..++...+...+  +-..+..+|. .|++|+|
T Consensus       201 ~l~~----l~h~~iv~l~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrD  274 (446)
T 4ejn_A          201 VLQN----SRHPFLTALKYSF-QTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHSEKNVVYRD  274 (446)
T ss_dssp             CCCC----CSCTTSCCEEEEE-EETTEEEEEECCCSSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHh----CCCCeEeeEEEEE-eeCCEEEEEEeeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHhhcCCEEECC
Confidence            2222    2222222222222 3345679999999999998765322 234444333322  2334888997 9999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.|||++.  ++.++|+|||++.........      .....+++.+++++++.-+..++..|++++...+.+++.
T Consensus       275 lkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  344 (446)
T 4ejn_A          275 LKLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  344 (446)
T ss_dssp             CCGGGEEECS--SSCEEECCCCCCCTTCC-----------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEECC--CCCEEEccCCCceeccCCCcc------cccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhh
Confidence            9999999985  789999999999865433211      112357888899998887777888899999988776653

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.58  E-value=5.8e-15  Score=160.83  Aligned_cols=186  Identities=13%  Similarity=0.109  Sum_probs=126.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  +....+.+|+.
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~~~~E~~   80 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA----------------------------------RDFQKLEREAR   80 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCH----------------------------------HHHHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  59999999986531110                                  01123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        81 il~~l----~hpnIv~~~~~~-~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dl  154 (362)
T 2bdw_A           81 ICRKL----QHPNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSNGIVHRNL  154 (362)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhC----CCCCCCeEEEEE-EeCCEEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccC
Confidence            66655    222222222222 3445679999999999998765322 223433333322  223478899999999999


Q ss_pred             CCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++... ++.++|+|||++..+.+....       ....+++.++++++...+..++..|++++...+.+++.
T Consensus       155 kp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~  225 (362)
T 2bdw_A          155 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV  225 (362)
T ss_dssp             SGGGEEESCSSTTCCEEECCCTTCBCCTTCCSC-------CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             chHHEEEecCCCCCCEEEeecCcceEecCCccc-------ccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHH
Confidence            99999997521 356999999999887654211       11346778889998877667778899999988776654

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.58  E-value=3.8e-15  Score=162.68  Aligned_cols=188  Identities=15%  Similarity=0.181  Sum_probs=127.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                     . .....        ...+.+|..
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~---------------------~-~~~~~--------~~~~~~E~~   67 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA---------------------S-RRGVC--------REEIEREVS   67 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTT---------------------C-SSSBC--------HHHHHHHHH
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEcccccc---------------------c-cchhH--------HHHHHHHHH
Confidence            6899999999999999  59999999987632211                     0 00000        112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ +.....++||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        68 il~~l----~hpnIv~l~~~~-~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDl  141 (361)
T 2yab_A           68 ILRQV----LHPNIITLHDVY-ENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTKKIAHFDL  141 (361)
T ss_dssp             HHTTC----CCTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCcCCCcEEEEE-EeCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            55443    222223333333 345567999999999999987642 2234444443332  223478899999999999


Q ss_pred             CCCcEEEeccCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||+||++.+  ++    .++|+|||++..+.+....       .-..+++.++++++...+..+...|+++++..+.+++
T Consensus       142 kp~NIll~~--~~~~~~~vkl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll  212 (361)
T 2yab_A          142 KPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL  212 (361)
T ss_dssp             SGGGEEESC--TTSSSCCEEECCCSSCEECCTTCCC-------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEeC--CCCCccCEEEEecCCceEcCCCCcc-------ccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHH
Confidence            999999975  33    7999999999887654210       1124678899999887766777889999998877665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       213 ~  213 (361)
T 2yab_A          213 S  213 (361)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.58  E-value=1.5e-15  Score=159.40  Aligned_cols=209  Identities=16%  Similarity=0.095  Sum_probs=120.1

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+.++.....-. ++  -+.......+..+.  . ...    ..+....+.+|+
T Consensus        18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~~E~   87 (298)
T 2zv2_A           18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQA-GF--PRRPPPRGTRPAPG--G-CIQ----PRGPIEQVYQEI   87 (298)
T ss_dssp             EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-----------------------------------------CHHHHHH
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhc-cc--cccccccccccccc--c-ccc----ccchHHHHHHHH
Confidence            36899999999999998  6999999998764321100 00  00000000000000  0 000    011122355677


Q ss_pred             HHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      +.+.++    .+..-+.+..++... ....++||||++|++|.++...  ..++...+...+  +-..+..+|..|++|+
T Consensus        88 ~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~  161 (298)
T 2zv2_A           88 AILKKL----DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLHYQKIIHR  161 (298)
T ss_dssp             HHHHTC----CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHhC----CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecc
Confidence            766655    233334444444332 3456999999999999886432  234444333322  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCChHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~---~~~~~D~~al~~~~~~~  529 (760)
                      |+||+||+++.  +++++|+|||++..+......      ..-..++..++++++...+.   ..+..|++++...+.++
T Consensus       162 Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l  233 (298)
T 2zv2_A          162 DIKPSNLLVGE--DGHIKIADFGVSNEFKGSDAL------LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCF  233 (298)
T ss_dssp             CCCGGGEEECT--TSCEEECCCTTCEECSSSSCE------ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHH
T ss_pred             CCCHHHEEECC--CCCEEEecCCCcccccccccc------ccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHH
Confidence            99999999985  889999999999877543210      01123566777777654332   13446889988777665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       234 ~  234 (298)
T 2zv2_A          234 V  234 (298)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.58  E-value=1.1e-14  Score=151.99  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=129.9

Q ss_pred             hhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      ..+..|. .+.||.|++|.||+|+.  +|+.||||+.++.......                           ..-..+.
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~---------------------------~~~~~~~   66 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFS---------------------------AEEVQEL   66 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCC---------------------------HHHHHHH
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccC---------------------------HHHHHHH
Confidence            3444554 37899999999999999  5899999998764211100                           0111223


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI  444 (760)
                      ...+.+|.+.+.++.    +++++ .+-.+ .......++||||++|++|.++.... ..++...+...+  +-..+..+
T Consensus        67 ~~~~~~e~~~l~~l~----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~l  140 (298)
T 1phk_A           67 REATLKEVDILRKVS----GHPNIIQLKDT-YETNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICAL  140 (298)
T ss_dssp             HHHHHHHHHHHHHHT----TCTTBCCEEEE-EECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc----CCCCEeeeeee-eccCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            344567777777663    23332 22222 23445679999999999999876432 234444433332  22347889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCCCCCCC
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVLVPTGD  518 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~------lG~~~~~~D  518 (760)
                      |..|++|+|++|.||+++.  ++.++|+|||++..+++....       ....++..++++++..      .+..+...|
T Consensus       141 H~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~D  211 (298)
T 1phk_A          141 HKLNIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKL-------REVCGTPSYLAPEIIECSMNDNHPGYGKEVD  211 (298)
T ss_dssp             HHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHH
T ss_pred             HHCCcccCCCCcceEEEcC--CCcEEEecccchhhcCCCccc-------ccccCCccccCHHHhccccccccccCCcccc
Confidence            9999999999999999985  889999999999887654211       1123455666777664      233456679


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++...+.+++.
T Consensus       212 i~slG~~l~~l~~  224 (298)
T 1phk_A          212 MWSTGVIMYTLLA  224 (298)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHH
Confidence            9999887766553

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.58  E-value=5e-15  Score=153.98  Aligned_cols=190  Identities=17%  Similarity=0.108  Sum_probs=126.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+.......                                      ..+.+|..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------~~~~~e~~   56 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--------------------------------------PQLHIESK   56 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--------------------------------------CCHHHHHH
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeecccccc--------------------------------------hHHHHHHH
Confidence            6899999999999997  6999999985442110                                      01233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+..+.    +.+.+.....+.......++||||+ |++|.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus        57 ~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dl  131 (296)
T 4hgt_A           57 IYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDV  131 (296)
T ss_dssp             HHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHHhc----CCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            444442    3344444444545566779999999 8899987654344455554444332  34478899999999999


Q ss_pred             CCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||++.. ..++.++|+|||++..+.......... .......+++.++++++......++..|++++...+.+++.
T Consensus       132 kp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  210 (296)
T 4hgt_A          132 KPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL  210 (296)
T ss_dssp             SGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhc
Confidence            999999931 137889999999998775532100000 00011245677788888776666677899999987766653

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=4.8e-15  Score=157.25  Aligned_cols=187  Identities=16%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .+.||.|++|.||+|+.+|+.||||+....-...                                       ...|...
T Consensus        42 ~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~e~~~   82 (337)
T 3mdy_A           42 VKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEAS---------------------------------------WFRETEI   82 (337)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEEEGGGHHH---------------------------------------HHHHHHH
T ss_pred             EeEeecCCCeEEEEEEECCceEEEEEEeccccch---------------------------------------hhhHHHH
Confidence            3689999999999999999999999975421111                                       0011111


Q ss_pred             HHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC-----
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH-----  447 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~-----  447 (760)
                      +...  ...+..-+.+...+....   ...++||||++|++|.++...  ..++...+...+.  ...+..+|..     
T Consensus        83 ~~~~--~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~  158 (337)
T 3mdy_A           83 YQTV--LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS--TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQ  158 (337)
T ss_dssp             HTST--TCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTT
T ss_pred             HHHH--hhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            1111  112222233333332222   456999999999999987643  3345444433332  2347888988     


Q ss_pred             ---CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC------CC
Q 004334          448 ---GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT------GD  518 (760)
Q Consensus       448 ---GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~------~D  518 (760)
                         |++|+|+||.||+++.  ++.++|+|||++..+........  .-.....++..++++++..-+.....      .|
T Consensus       159 ~~~~ivH~Dikp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~D  234 (337)
T 3mdy_A          159 GKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVKFISDTNEVD--IPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMAD  234 (337)
T ss_dssp             CBCCEECSCCCGGGEEECT--TSCEEECCCTTCEECC-----------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHH
T ss_pred             cCCCEEecccchHHEEECC--CCCEEEEeCCCceeecccccccc--CCCCCCccCcceeChhhcccccCCccccCccccc
Confidence               9999999999999985  78999999999988765433211  10112246778889998876655555      79


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++.-.+.+++.
T Consensus       235 iwslG~il~el~t  247 (337)
T 3mdy_A          235 MYSFGLILWEVAR  247 (337)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHh
Confidence            9999887766653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.58  E-value=8e-15  Score=155.47  Aligned_cols=187  Identities=17%  Similarity=0.117  Sum_probs=124.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           .        ...+.+|++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------~--------~~~~~~E~~   59 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------P--------VDVQMREFE   59 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------C--------HHHHHHHHH
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------h--------HHHHHHHHH
Confidence            5799999999999999  49999999976421100                           0        012235655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++    .+..-+.+-.++.... ...+|||||++|++|.++......  +++...+...+  +-..+..+|..|++|
T Consensus        60 ~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH  135 (319)
T 4euu_A           60 VLKKL----NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVH  135 (319)
T ss_dssp             HHHHC----CCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhc----CCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEec
Confidence            56555    2322233333333222 256999999999999987653322  24544443333  233478899999999


Q ss_pred             cCCCCCcEEEecc--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--------cCCCCCCCChHH
Q 004334          452 ADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--------MGVLVPTGDTTA  521 (760)
Q Consensus       452 aDpHPGNILV~~~--~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~--------lG~~~~~~D~~a  521 (760)
                      +|+||.||++...  .++.++|+|||++..++.....       ....++..++++++..        .+..++..|+++
T Consensus       136 ~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diws  208 (319)
T 4euu_A          136 RNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF-------VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS  208 (319)
T ss_dssp             SCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHH
T ss_pred             CCCCHHHEEEeccCCCCceEEEccCCCceecCCCCce-------eecccCCCccCHHHhhhccccccccCCCCcHHHHHH
Confidence            9999999998311  2567999999999887654321       0123567777887776        345567789999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      +...+.+++.
T Consensus       209 lG~il~el~~  218 (319)
T 4euu_A          209 IGVTFYHAAT  218 (319)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988776654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.58  E-value=3.2e-15  Score=156.31  Aligned_cols=184  Identities=16%  Similarity=0.120  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|+.
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~   53 (292)
T 3o0g_A            8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPSSALREIC   53 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THHHHHHHHHH
T ss_pred             eEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC----------------------------------CcchHHHHHHH
Confidence            6799999999999999  58999999987532111                                  01112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|..+..+.. ....++...+...+  +-..+..+|..|++|+|+
T Consensus        54 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~di  127 (292)
T 3o0g_A           54 LLKEL----KHKNIVRLHDVL-HSDKKLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDL  127 (292)
T ss_dssp             HHTTC----CCTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHhcC----CCCCEeeEEeEE-EeCCEEEEEEecCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            55444    232223333333 33566799999999854444332 22334444433332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++.++|+|||++..++......      ....++..++++++...+. .+...|+++++..+.+++
T Consensus       128 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~  196 (292)
T 3o0g_A          128 KPQNLLINR--NGELKLANFGLARAFGIPVRCY------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA  196 (292)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECCSCCSCC------CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHT
T ss_pred             CHHHEEEcC--CCCEEEeecccceecCCccccc------cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHH
Confidence            999999986  8899999999998775332110      1123466677888775433 567789999988776654

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.58  E-value=7.2e-15  Score=160.63  Aligned_cols=198  Identities=15%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             hhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       292 iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      +...|. .+.||.|++|.||+|+.  +|+.||||+........                                  ...
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~----------------------------------~~~   52 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNS----------------------------------TDA   52 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCH----------------------------------HHH
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccCh----------------------------------HHH
Confidence            444554 37899999999999998  59999999875422111                                  011


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQIL  445 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~  445 (760)
                      ..+.+|...+.++.   .+..-+.+-.++..- ....++||||++| .|.++...  ..++.......  .+-..++.+|
T Consensus        53 ~~~~~E~~~l~~l~---~h~niv~l~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH  126 (388)
T 3oz6_A           53 QRTFREIMILTELS---GHENIVNLLNVLRADNDRDVYLVFDYMET-DLHAVIRA--NILEPVHKQYVVYQLIKVIKYLH  126 (388)
T ss_dssp             HHHHHHHHHHHHTT---TCTTBCCEEEEEECTTSSCEEEEEECCSE-EHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc---CCCCCCeeeeEEecCCCCEEEEEecccCc-CHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            12334555555442   122223333443322 2356999999996 67665432  22333332222  2233488899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhH-------------HHH--HHHHHHHhhcCHHHHHHHHHHc
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-------------EGL--LEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r-------------~~l--~~l~~al~~~D~~~v~~~l~~l  510 (760)
                      ..|++|+|+||+|||++.  ++.++|+|||++..+....+             ..+  ......-..+++.+++++++.-
T Consensus       127 ~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  204 (388)
T 3oz6_A          127 SGGLLHRDMKPSNILLNA--ECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLG  204 (388)
T ss_dssp             HTTEECCCCCGGGEEECT--TCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTT
T ss_pred             hCCEEeCCCCHHHeEEcC--CCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcC
Confidence            999999999999999986  88999999999987643100             000  0011122346677888887753


Q ss_pred             -CCCCCCCChHHHHHHHHHHHH
Q 004334          511 -GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       511 -G~~~~~~D~~al~~~~~~~l~  531 (760)
                       ...+...|+++++-.+.+++.
T Consensus       205 ~~~~~~~~DiwSlG~il~ell~  226 (388)
T 3oz6_A          205 STKYTKGIDMWSLGCILGEILC  226 (388)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhHHHHHHHHHHHHh
Confidence             445667899999988877664

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.58  E-value=3e-15  Score=160.75  Aligned_cols=188  Identities=16%  Similarity=0.094  Sum_probs=124.9

Q ss_pred             ccccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      .+.||.|++|.||+|++       +|+.||||+.+......                                   ....
T Consensus        27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~   71 (359)
T 3vhe_A           27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-----------------------------------EHRA   71 (359)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH-----------------------------------HHHH
T ss_pred             ceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHH-----------------------------------HHHH
Confidence            36899999999999984       36899999987642211                                   1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC-----------------------
Q 004334          371 LYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-----------------------  426 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g-----------------------  426 (760)
                      +.+|++.+.++.    ++++ +.+-..+.+.....++||||++|++|.++.......                       
T Consensus        72 ~~~E~~~l~~l~----~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
T 3vhe_A           72 LMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPV  147 (359)
T ss_dssp             HHHHHHHHHHHC----CCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------
T ss_pred             HHHHHHHHHhhc----CCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccch
Confidence            456666666652    2222 333333333344579999999999999876432110                       


Q ss_pred             ------------------------------------------CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEe
Q 004334          427 ------------------------------------------VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVD  462 (760)
Q Consensus       427 ------------------------------------------~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~  462 (760)
                                                                ++...+...+  +...+..+|..|++|+|+||.||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~  227 (359)
T 3vhe_A          148 DLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS  227 (359)
T ss_dssp             ------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred             hhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEc
Confidence                                                      2323332222  23347889999999999999999998


Q ss_pred             ccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          463 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       463 ~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      .  ++.++|+|||++..+........    .....++..++++++...+..++..|++++.-.+.+++
T Consensus       228 ~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell  289 (359)
T 3vhe_A          228 E--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF  289 (359)
T ss_dssp             G--GGCEEECCCGGGSCTTSCTTCEE----C--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             C--CCcEEEEeccceeeecccccchh----ccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHH
Confidence            6  78999999999987644321100    11223456678888877776677789999988776654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.58  E-value=7.2e-15  Score=165.05  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=127.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||+|+........                                  .-...+.+|++
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~----------------------------------~~~~~~~~E~~   62 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSA----------------------------------RDHQKLEREAR   62 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHH----------------------------------HHHHHHHHHHH
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999976532110                                  11123456766


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ +.....++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        63 il~~l----~hpnIv~l~~~~-~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~e~~~~~i~~qil~aL~~lH~~givHrDl  136 (444)
T 3soa_A           63 ICRLL----KHPNIVRLHDSI-SEEGHHYLIFDLVTGGELFEDIVAR-EYYSEADASHCIQQILEAVLHCHQMGVVHRNL  136 (444)
T ss_dssp             HHHHC----CBTTBCCEEEEE-ECSSEEEEEECCCBCCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhC----CCcCCCeEEEEE-EECCEEEEEEEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCC
Confidence            66655    222223333333 3456679999999999998765322 234444433332  223478899999999999


Q ss_pred             CCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.. .++.++|+|||++..+.......      .-..+++.+++++++..+..++..|+++++-.+.+++.
T Consensus       137 Kp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~------~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~  208 (444)
T 3soa_A          137 KPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW------FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV  208 (444)
T ss_dssp             SSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBC------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEeccCCCCcEEEccCceeEEecCCCcee------ecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHh
Confidence            9999999842 35789999999998876543210      11246788899998877767778899999988777654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.57  E-value=6.3e-15  Score=154.12  Aligned_cols=189  Identities=14%  Similarity=0.074  Sum_probs=125.4

Q ss_pred             cccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|++.     +..||||+.+.....                                   .....+.+
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~-----------------------------------~~~~~~~~   75 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDI-----------------------------------GEVSQFLT   75 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSH-----------------------------------HHHHHHHH
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCH-----------------------------------HHHHHHHH
Confidence            68999999999999972     236899987652111                                   11122445


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+-.++.+.....+++|||++|++|.++........+...+....  +-..+..+|..|++|
T Consensus        76 E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H  151 (298)
T 3f66_A           76 EGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVH  151 (298)
T ss_dssp             HHHHHHTC----CCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            65555544    233334444443444556799999999999999875444445555444332  334488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++|+|||++..+.+........  .....+++.+++++....+..++..|++++...+.+++
T Consensus       152 ~dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  226 (298)
T 3f66_A          152 RDLAARNCMLDE--KFTVKVADFGLARDMYDKEYYSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM  226 (298)
T ss_dssp             SCCSGGGEEECT--TCCEEECSCGGGCCCSCGGGCBC-------CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchheEEECC--CCCEEECcccccccccccchhcccc--ccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHH
Confidence            999999999985  8899999999998876543211110  11123445677788777666677789999988776654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.57  E-value=9.4e-15  Score=155.01  Aligned_cols=178  Identities=16%  Similarity=0.173  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++...+.                                       +.+|+.
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~E~~   82 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK---------------------------------------IKREIK   82 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHH---------------------------------------HHHHHH
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEecccchHH---------------------------------------HHHHHH
Confidence            6899999999999998  69999999987643222                                       334555


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++.    ++++ +.+-.++... ....++||||++|.++.++..  .  +....+...+  +-..+..+|..|++|+
T Consensus        83 ~l~~l~----~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~--~~~~~~~~~~~qi~~~l~~lH~~~ivH~  154 (330)
T 3nsz_A           83 ILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ--T--LTDYDIRFYMYEILKALDYCHSMGIMHR  154 (330)
T ss_dssp             HHHHHT----TSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG--G--CCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHcC----CCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH--h--CCHHHHHHHHHHHHHHHHHHHhCCeeeC
Confidence            555553    2222 3333333221 445699999999999988653  1  3333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+||+++. +++.++|+|||++..+.+....       ....++..++++++... +..+...|++++...+.+++.
T Consensus       155 Dikp~Nil~~~-~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~  226 (330)
T 3nsz_A          155 DVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF  226 (330)
T ss_dssp             CCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHEEEcC-CCCEEEEEeCCCceEcCCCCcc-------ccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHh
Confidence            99999999985 2348999999999877654321       11234556677776654 455667899999987776653

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.57  E-value=7e-15  Score=153.13  Aligned_cols=190  Identities=17%  Similarity=0.112  Sum_probs=126.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+........                                      .+.+|+.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------~~~~e~~   56 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------QLHIESK   56 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCC--------------------------------------HHHHHHH
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchh--------------------------------------HHHHHHH
Confidence            6899999999999997  69999999876531110                                      1334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+.    +.+.+.....+.......++||||+ |++|.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus        57 ~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dl  131 (296)
T 3uzp_A           57 IYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDV  131 (296)
T ss_dssp             HHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHHhh----cCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCC
Confidence            555553    2233333333444456679999999 889998765434445554444333  223478899999999999


Q ss_pred             CCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++. ..++.++|+|||++..+.......... .......++..++++++..-+..++..|++++...+.+++.
T Consensus       132 kp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  210 (296)
T 3uzp_A          132 KPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL  210 (296)
T ss_dssp             CGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHh
Confidence            999999951 137899999999998776542210000 00011245667788888776666777899999987776654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.57  E-value=7.8e-15  Score=156.66  Aligned_cols=188  Identities=18%  Similarity=0.214  Sum_probs=124.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  +....+.+|+.
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~e~~   80 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ----------------------------------DCRAEILHEIA   80 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE----------------------------------ECHHHHHHHHH
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  59999999876532111                                  00112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +++++.-..-+.+.....++||||++|++|.++.... ...++...+...+  +-..+..+|..|++|+|
T Consensus        81 ~l~~l~----~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~D  156 (327)
T 3lm5_A           81 VLELAK----SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLD  156 (327)
T ss_dssp             HHHHTT----TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHhcc----CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCc
Confidence            555442    3333322222224456679999999999998875322 1234444443333  22347889999999999


Q ss_pred             CCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.. +++.++|+|||++..++.....       .-..+++.++++++...+..++..|++++...+.+++.
T Consensus       157 ikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~  228 (327)
T 3lm5_A          157 LKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL-------REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLT  228 (327)
T ss_dssp             CCGGGEEESCBTTBCCEEECCGGGCEEC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CChHHEEEecCCCCCcEEEeeCccccccCCcccc-------ccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHh
Confidence            99999999741 2578999999999988654321       11346788889998887777778899999987776653

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.57  E-value=6.1e-15  Score=159.52  Aligned_cols=191  Identities=14%  Similarity=0.117  Sum_probs=125.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..  +     ...        ...+.+|+.
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------~~--~-----~~~--------~~~~~~E~~   78 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFT----------------SS--P-----GLS--------TEDLKREAS   78 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH----------------TS--S-----SCC--------HHHHHHHHH
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhcc----------------cc--c-----cch--------HHHHHHHHH
Confidence            6899999999999998  5999999987541100                00  0     000        123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-c--CCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-L--GVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~--g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+..+    .+..-+.+-.++ ......+|||||++|++|.+...... .  .++...+...+  +-..+..+|..|++|
T Consensus        79 ~l~~l----~hpnIv~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH  153 (351)
T 3c0i_A           79 ICHML----KHPHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIH  153 (351)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhC----CCCCCCcEEEEE-EeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCcee
Confidence            66655    232223333333 33456799999999999987543221 1  23433332222  223478899999999


Q ss_pred             cCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.. .++.++|+|||++..+......      .....+++.++++++..-+..+...|++++...+.+++
T Consensus       154 rDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  227 (351)
T 3c0i_A          154 RDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV------AGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILL  227 (351)
T ss_dssp             SCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCB------CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             ccCChHHeEEecCCCCCcEEEecCcceeEecCCCee------ecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHH
Confidence            9999999999751 1245999999999887653210      11124678888999887776777889999998877665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       228 ~  228 (351)
T 3c0i_A          228 S  228 (351)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.57  E-value=5.9e-15  Score=157.42  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-..                                      ..+.+|++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------~~~~~E~~   56 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA--------------------------------------PQLHLEYR   56 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS--------------------------------------CCHHHHHH
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEeccccch--------------------------------------HHHHHHHH
Confidence            6899999999999997  6999999987542110                                      01334555


Q ss_pred             HHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHa  452 (760)
                      .+.++.    ++++  +++++  .......++||||+ |++|.++.......++...+...+.  -..+..+|..|++|+
T Consensus        57 ~l~~l~----~h~~--i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHr  129 (330)
T 2izr_A           57 FYKQLG----SGDG--IPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYR  129 (330)
T ss_dssp             HHHHHC----SCTT--SCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHhh----CCCC--CCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            555552    2233  23333  23345679999999 9999997654334455554443332  234888999999999


Q ss_pred             CCCCCcEEEeccCCCc-----EEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       453 DpHPGNILV~~~~~g~-----l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      |+||.||+++.  ++.     ++|+|||++..+.......... --.....+++.++++++..-+..++..|++++.-.+
T Consensus       130 Dlkp~Nill~~--~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  207 (330)
T 2izr_A          130 DVKPENFLIGR--PGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMF  207 (330)
T ss_dssp             CCCGGGEEECC--GGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCHHHeeecc--CCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHH
Confidence            99999999985  555     9999999998764432100000 000112467788888888766667778999999887


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       208 ~ell~  212 (330)
T 2izr_A          208 MYFLR  212 (330)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=4.4e-15  Score=161.91  Aligned_cols=181  Identities=19%  Similarity=0.242  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|+||+|+.  +|+.||||+.......                                  ......+.+|++
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~~E~~   76 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQS----------------------------------ELFAKRAYRELR   76 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSS----------------------------------HHHHHHHHHHHH
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccC----------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  5999999987542211                                  111223456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+.++.    +..-+.+..++..-     .+..++||||+ |.+|.++...  ..++...+...+  +-..+..+|..|+
T Consensus        77 ~l~~l~----hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~~i  149 (367)
T 1cm8_A           77 LLKHMR----HENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIHAAGI  149 (367)
T ss_dssp             HHHHCC----BTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHhCC----CcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            666552    22333444444322     13459999999 7888887543  234443333322  2344788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~  528 (760)
                      +|+|+||+||+++.  ++.++|+|||++...+.....         ..++..++++++... ...+...|+++++-.+.+
T Consensus       150 vH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  218 (367)
T 1cm8_A          150 IHRDLKPGNLAVNE--DCELKILDFGLARQADSEMTG---------YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAE  218 (367)
T ss_dssp             ECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCCS---------SCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHH
T ss_pred             cccCcCHHHEEEcC--CCCEEEEeeecccccccccCc---------CcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHH
Confidence            99999999999986  889999999999887654211         234566777776654 456778899999988776


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       219 ll~  221 (367)
T 1cm8_A          219 MIT  221 (367)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.57  E-value=3.9e-15  Score=156.33  Aligned_cols=182  Identities=18%  Similarity=0.185  Sum_probs=124.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                           .        ...+.+|+.
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------~~~~~~e~~   72 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED---------------------------E--------IEDIQQEIT   72 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST---------------------------T--------HHHHHHHHH
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccccHH---------------------------H--------HHHHHHHHH
Confidence            5799999999999998  58999999987632111                           0        112344555


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++     +++++ .+-.++ ......++||||++|.+|.++...  ..++...+...+  +-..+..+|..|++|+|
T Consensus        73 ~l~~l-----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~d  144 (303)
T 3a7i_A           73 VLSQC-----DSPYVTKYYGSY-LKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSEKKIHRD  144 (303)
T ss_dssp             HHHHC-----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHhC-----CCCCEeEEEEEE-ecCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence            55443     22322 222222 234567999999999999987542  334444443333  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  +++++|+|||++..+......      .....++..++++++...+..++..|++++...+.+++.
T Consensus       145 l~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  214 (303)
T 3a7i_A          145 IKAANVLLSE--HGEVKLADFGVAGQLTDTQIK------RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAR  214 (303)
T ss_dssp             CSGGGEEECT--TSCEEECCCTTCEECBTTBCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CChheEEECC--CCCEEEeecccceecCccccc------cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHcc
Confidence            9999999985  789999999999887653211      011235667788888877767778899999887766653

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=152.99  Aligned_cols=190  Identities=18%  Similarity=0.138  Sum_probs=123.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..-...                       . ...       ....+.+|..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------~-~~~-------~~~~~~~e~~   63 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGG-----------------------G-GGG-------LPISTVREVA   63 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCT-----------------------T-SSC-------CCHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEecccccc-----------------------c-ccc-------cchhHHHHHH
Confidence            6899999999999997  69999999876421100                       0 000       0011234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCC----CeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st----~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .++++.. +.+..-+.+..++....+    ..+++|||++| +|.++..... .+++...+...+  +-..+..+|..|+
T Consensus        64 ~l~~l~~-~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  141 (308)
T 3g33_A           64 LLRRLEA-FEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCI  141 (308)
T ss_dssp             HHHHHHH-HCCTTBCCEEEEEEECCSSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhh-cCCCCeEEeeeeeeccCCCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            4444432 123333344444433222    36899999997 7777653322 224444443332  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++...+..++..|++++.-.+.++
T Consensus       142 vH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l  212 (308)
T 3g33_A          142 VHRDLKPENILVTS--GGTVKLADFGLARIYSYQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM  212 (308)
T ss_dssp             CCSCCCTTTEEECT--TSCEEECSCSCTTTSTTCCCS-------GGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHT
T ss_pred             ccCCCCHHHEEEcC--CCCEEEeeCccccccCCCccc-------CCccccccccCchHHcCCCCCchHHHHHHHHHHHHH
Confidence            99999999999985  789999999999877643321       113456778888888777778889999998776554


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       213 ~  213 (308)
T 3g33_A          213 F  213 (308)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.57  E-value=3.4e-15  Score=159.39  Aligned_cols=207  Identities=15%  Similarity=0.108  Sum_probs=128.6

Q ss_pred             CCChhhhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          286 GAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       286 G~~~~~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      |..+.++-..|. .+.||.|++|.||+|+.  +|+.||||+.++.....                 .             
T Consensus        18 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------~-------------   67 (345)
T 3hko_A           18 GGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQ-----------------I-------------   67 (345)
T ss_dssp             CBCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC-------------------------------
T ss_pred             CchhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcc-----------------c-------------
Confidence            445555556664 37899999999999998  58999999976521100                 0             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-----------------
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------------  425 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-----------------  425 (760)
                       -.+....+.+|++.+.++.    +..-+.+-.++ ......+|||||++|++|.++......                 
T Consensus        68 -~~~~~~~~~~E~~~l~~l~----hpniv~~~~~~-~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~  141 (345)
T 3hko_A           68 -NPKDVERIKTEVRLMKKLH----HPNIARLYEVY-EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICP  141 (345)
T ss_dssp             ---CHHHHHHHHHHHHHHCC----CTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCC
T ss_pred             -CHHHHHHHHHHHHHHHhCC----CCCcceeehhh-ccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccc
Confidence             0011223556777776652    22222333332 334567999999999999886531000                 


Q ss_pred             --------------------C--CCHHH---HHHHHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          426 --------------------G--VDRKR---LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       426 --------------------g--~d~~~---la~~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                                          .  .+...   ++.. +-..+..+|..|++|+|+||.||+++....+.++|+|||++..+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~q-i~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~  220 (345)
T 3hko_A          142 CPECNEEAINGSIHGFRESLDFVQREKLISNIMRQ-IFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEF  220 (345)
T ss_dssp             SHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHH-HHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEG
T ss_pred             cccccccccccccccccccccccccHHHHHHHHHH-HHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccc
Confidence                                0  01111   2222 22347889999999999999999998522348999999999876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCChHHHHHHHHHHHH
Q 004334          481 SPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       481 ~~~~r~~l~~l~~al~~~D~~~v~~~l~~l--G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..........  .....+++.++++++...  +..++..|++++.-.+.+++.
T Consensus       221 ~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~  271 (345)
T 3hko_A          221 YKLNNGEYYG--MTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLM  271 (345)
T ss_dssp             GGTTCC----------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHH
T ss_pred             cccCcccccc--ccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHH
Confidence            4422111110  112346777888888764  455667899999987766553

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.57  E-value=7.8e-15  Score=154.01  Aligned_cols=187  Identities=16%  Similarity=0.100  Sum_probs=125.8

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.       +|+.||||+.++.....                                   ....+
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   73 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT-----------------------------------EREAL   73 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH-----------------------------------HHHHH
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHH-----------------------------------HHHHH
Confidence            6899999999999985       36899999987742111                                   11234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc-----------------CCCHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------------GVDRKRLGR  434 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~-----------------g~d~~~la~  434 (760)
                      .+|++.+.++.    +++++.-..-+.......++||||++|++|.++......                 .++...+..
T Consensus        74 ~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (313)
T 1t46_A           74 MSELKVLSYLG----NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLS  149 (313)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHH
T ss_pred             HHHHHHHhhcc----cCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHH
Confidence            56666666652    233322222222345667999999999999987643321                 134444433


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          435 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       435 ~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      .+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+...+++++....+.
T Consensus       150 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  223 (313)
T 1t46_A          150 FSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPESIFNCV  223 (313)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCeecCCCccceEEEcC--CCCEEEcccccccccccccccee----ccCCCCcceeeChHHhcCCC
Confidence            33  223478899999999999999999986  88999999999988765422100    01112344577777776666


Q ss_pred             CCCCCChHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l  530 (760)
                      .++..|++++...+.+++
T Consensus       224 ~~~~~Di~slG~il~ell  241 (313)
T 1t46_A          224 YTFESDVWSYGIFLWELF  241 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHH
Confidence            777789999988776665

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=4.8e-15  Score=158.41  Aligned_cols=187  Identities=15%  Similarity=0.095  Sum_probs=123.5

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.       +|+.||||+.++....                                   +....+
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~~~~~~   95 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADS-----------------------------------SEREAL   95 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-----------------------------------------CHHH
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEecccccCH-----------------------------------HHHHHH
Confidence            6899999999999996       3578999998763111                                   011234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC----------------------CCH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----------------------VDR  429 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g----------------------~d~  429 (760)
                      .+|+..+.++.    +++++.-..-+.......++||||++|++|.++.......                      ++.
T Consensus        96 ~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  171 (344)
T 1rjb_A           96 MSELKMMTQLG----SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF  171 (344)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCH
T ss_pred             HHHHHHHHhhc----CCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCH
Confidence            56666666652    2333322222223456789999999999999876433211                      233


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004334          430 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  507 (760)
Q Consensus       430 ~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l  507 (760)
                      ..+...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ......+++.++++++
T Consensus       172 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~----~~~~~~~t~~y~aPE~  245 (344)
T 1rjb_A          172 EDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYV----VRGNARLPVKWMAPES  245 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSE----EETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcC--CCcEEeCCCccCcccccCccce----eccCccCccCccCHHH
Confidence            3333222  223478899999999999999999985  8899999999998775432110    0111223456778887


Q ss_pred             HHcCCCCCCCChHHHHHHHHHHH
Q 004334          508 VQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       508 ~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ...+..++..|++++...+.+++
T Consensus       246 ~~~~~~~~~~Di~slG~il~el~  268 (344)
T 1rjb_A          246 LFEGIYTIKSDVWSYGILLWEIF  268 (344)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             hccCCCChhHhHHHHHHHHHHHH
Confidence            77777777889999988776654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.57  E-value=1e-14  Score=158.77  Aligned_cols=183  Identities=17%  Similarity=0.095  Sum_probs=115.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+...+....                                     ..+.+|+.
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~~~~~E~~   68 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-------------------------------------ENVQREII   68 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC-------------------------------------HHHHHHHH
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc-------------------------------------HHHHHHHH
Confidence            6899999999999999  69999999876532110                                     12345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ...+..++||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        69 ~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dl  142 (361)
T 3uc3_A           69 NHRSL----RHPNIVRFKEVI-LTPTHLAIIMEYASGGELYERICN-AGRFSEDEARFFFQQLLSGVSYCHSMQICHRDL  142 (361)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCC
T ss_pred             HHHhC----CCCCCCcEEEEE-eeCCEEEEEEEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            55544    232223333333 334567999999999999886532 2234444333332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT-GDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~-~D~~al~~~~~~~l~  531 (760)
                      ||.||+++....++++|+|||++.........       ....+++.++++++...+..... .|+++++..+.+++.
T Consensus       143 kp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  213 (361)
T 3uc3_A          143 KLENTLLDGSPAPRLKICDFGYSKSSVLHSQP-------KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLV  213 (361)
T ss_dssp             CGGGEEECSSSSCCEEECCCCCC----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcCCCCceEEEeecCccccccccCCC-------CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHh
Confidence            99999998533446999999998754332221       11235667778887765444333 699999887766653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.57  E-value=3.7e-15  Score=155.79  Aligned_cols=185  Identities=18%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+||+|+. +|+.||||+.+......                                  +....+.+|+..
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~~~~~~E~~~   53 (288)
T 1ob3_A            8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE----------------------------------GIPSTTIREISI   53 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG----------------------------------CCCHHHHHHHHG
T ss_pred             hhcccCCCEEEEEEEcCCCCEEEEEEEecccccc----------------------------------ccchhHHHHHHH
Confidence            6899999999999999 69999999886532110                                  000122345444


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +.++    .+..-+.+-.++ ......++||||++| ++.++......+++...+...+  +-..+..+|..|++|+|+|
T Consensus        54 l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  127 (288)
T 1ob3_A           54 LKEL----KHSNIVKLYDVI-HTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK  127 (288)
T ss_dssp             GGGC----CCTTBCCEEEEE-ECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HHhc----CCCCEeeeeeEE-ccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            4433    222222332322 334667999999998 7777654433445544433332  2234788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+++.  ++.++|+|||++..+.......      ....++..++++++... ...++..|++++.-.+.+++.
T Consensus       128 p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  196 (288)
T 1ob3_A          128 PQNLLINR--EGELKIADFGLARAFGIPVRKY------THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN  196 (288)
T ss_dssp             GGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH
T ss_pred             HHHEEEcC--CCCEEEeECccccccCcccccc------ccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHh
Confidence            99999985  8899999999998765432211      11134566777777643 335667899999987766653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.57  E-value=4.8e-15  Score=156.12  Aligned_cols=187  Identities=14%  Similarity=0.071  Sum_probs=113.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.-...                                 .+....+.+|+.
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~E~~   84 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD---------------------------------AKARADCIKEID   84 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCC---------------------------------HHHHHHHHHHHH
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccC---------------------------------HHHHHHHHHHHH
Confidence            7899999999999998  69999999887521100                                 011123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++    .+..-+.+-..+ ......+++|||++|++|.++....   ...++...+...+  +-..+..+|..|++|
T Consensus        85 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H  159 (310)
T 2wqm_A           85 LLKQL----NHPNVIKYYASF-IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMH  159 (310)
T ss_dssp             HHHTC----CCTTBCCEEEEE-EETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHhC----CCCCEeeEEEEE-EcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeC
Confidence            65554    222222222222 2345679999999999999876421   2224444433332  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|++|.||+++.  ++.++|+|||++..++......      ....++..++++++...+..+...|++++...+.+++.
T Consensus       160 ~dl~p~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~  231 (310)
T 2wqm_A          160 RDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAA------HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA  231 (310)
T ss_dssp             CCCCGGGEEECT--TSCEEECCC------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHEEEcC--CCCEEEEeccceeeecCCCccc------cccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHh
Confidence            999999999985  8899999999998776543211      11234556677777766666667799999877766553

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.57  E-value=8.6e-15  Score=164.15  Aligned_cols=182  Identities=15%  Similarity=0.135  Sum_probs=122.1

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|++ .+..||||+.+++...                                     .+.+.+|++.
T Consensus       190 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-------------------------------------~~~~~~E~~~  232 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------PEAFLQEAQV  232 (452)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-------------------------------------HHHHHHHHHH
T ss_pred             eeecCCCCeEEEEEEECCCceEEEEEeccCCCC-------------------------------------HHHHHHHHHH
Confidence            6899999999999999 4678999998774211                                     0124567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+..-+.+-.++.  ....+|||||++|++|.++..... ..++...+...+  +...+..+|..|++|+|+
T Consensus       233 l~~l----~hp~iv~~~~~~~--~~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDl  306 (452)
T 1fmk_A          233 MKKL----RHEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL  306 (452)
T ss_dssp             HHHC----CCTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHhC----CCCCEeeEEEEEc--CCceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCC
Confidence            7665    2322333333332  256799999999999999765322 224444443333  233478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+.......     .........+++++....+..++..|++++...+.+++
T Consensus       307 kp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~  375 (452)
T 1fmk_A          307 RAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELT  375 (452)
T ss_dssp             SGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEECC--CCCEEECCCccceecCCCceec-----ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHH
Confidence            999999986  7899999999998776432111     11122345678888887777777889999988776654

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.56  E-value=5.7e-15  Score=153.43  Aligned_cols=183  Identities=14%  Similarity=0.080  Sum_probs=123.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+++...                                     ...+.+|+.
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------------------------------------~~~~~~E~~   61 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------VEEFLKEAA   61 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTH-------------------------------------HHHHHHHHH
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcCHHH-------------------------------------HHHHHHHHH
Confidence            6899999999999999  4899999998653211                                     112345665


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    +..-+.+-.+ .......++||||++|++|.++.... ...++...+...+  +-..+..+|..|++|+|
T Consensus        62 ~l~~l~----h~~i~~~~~~-~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~d  136 (288)
T 3kfa_A           62 VMKEIK----HPNLVQLLGV-CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD  136 (288)
T ss_dssp             HHHHCC----CTTBCCEEEE-ECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHhCC----CCCEeeEEEE-EccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCC
Confidence            565552    2222222222 23445679999999999999876432 2224444433322  23447889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.||+++.  ++.++|+|||++..++......     .....+++.+++++....+..++..|++++...+.+++
T Consensus       137 ikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll  206 (288)
T 3kfa_A          137 LAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA  206 (288)
T ss_dssp             CSGGGEEECG--GGCEEECCCCGGGTSCSSSSEE-----ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEcC--CCCEEEccCccceeccCCcccc-----ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHH
Confidence            9999999986  7899999999998776432110     01112345567777777666677789999988776654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.56  E-value=2.2e-14  Score=152.88  Aligned_cols=186  Identities=11%  Similarity=0.053  Sum_probs=124.2

Q ss_pred             cccccccccEEEEEEE--CC-eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G-~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|.||+|+.  +| +.||||+.+..-                                     .....+.+|+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~~~~~E~   67 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-------------------------------------KYREAARLEI   67 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-------------------------------------HHHHHHHHHH
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEcccc-------------------------------------cchhHHHHHH
Confidence            6899999999999998  34 899999986521                                     1112344566


Q ss_pred             HHHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      ..+.++.+..... ...+...+  .......+|||||++|..+..+.......++...+...+  +-..+..+|..|++|
T Consensus        68 ~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH  146 (355)
T 2eu9_A           68 NVLKKIKEKDKEN-KFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTH  146 (355)
T ss_dssp             HHHHHHHHHCTTS-CSCBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             HHHHHHhhcCCCC-ceeEEEeeeeeeeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            6666665432211 11222222  234567799999996655544433222334544443333  223478899999999


Q ss_pred             cCCCCCcEEEec-----------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          452 ADPHPGNIAVDD-----------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       452 aDpHPGNILV~~-----------------~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                      +|+||+||++..                 ..++.++|+|||++........         ...++..++++++..-+..+
T Consensus       147 ~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~  217 (355)
T 2eu9_A          147 TDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHT---------TIVATRHYRPPEVILELGWA  217 (355)
T ss_dssp             CCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCC---------SSCSCGGGCCHHHHTTCCCC
T ss_pred             CCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccccccc---------CCcCCCcccCCeeeecCCCC
Confidence            999999999932                 1368899999999987654321         12467778888888766667


Q ss_pred             CCCChHHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l~  531 (760)
                      +..|++++.-.+.+++.
T Consensus       218 ~~~Di~slG~il~el~~  234 (355)
T 2eu9_A          218 QPCDVWSIGCILFEYYR  234 (355)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHh
Confidence            77899999987776653

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.56  E-value=3.1e-15  Score=165.09  Aligned_cols=189  Identities=13%  Similarity=0.204  Sum_probs=126.8

Q ss_pred             hcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       293 F~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +..|. .+.||.|++|.||+|+.  +|+.||||+.+....                ...                 ....
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~----------------~~~-----------------~~~~   60 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC----------------VER-----------------NEVR   60 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TCHH
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc----------------ccH-----------------HHHH
Confidence            34454 37899999999999998  589999998754100                000                 0012


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      .+.+|++.+..+     +++++  ++++.  ......++||||++|++|.++.... ..++...+...+  +-..+..+|
T Consensus        61 ~~~~E~~il~~l-----~hp~I--v~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH  132 (384)
T 4fr4_A           61 NVFKELQIMQGL-----EHPFL--VNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN-VHFKEETVKLFICELVMALDYLQ  132 (384)
T ss_dssp             HHHHHHHHHHTC-----CCTTB--CCEEEEEECSSEEEEEECCCTTEEHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-----CCCCC--CcEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            234565555544     23332  23332  3345679999999999998865422 234443333222  234478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCChHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAV  522 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l---G~~~~~~D~~al  522 (760)
                      ..|++|+|+||+||+++.  +|.++|+|||++..++.....       ....+++.+++++++..   ...+...|++++
T Consensus       133 ~~givHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~-------~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSl  203 (384)
T 4fr4_A          133 NQRIIHRDMKPDNILLDE--HGHVHITDFNIAAMLPRETQI-------TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSL  203 (384)
T ss_dssp             HTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHH
T ss_pred             HCCceeccCcHHHeEECC--CCCEEEeccceeeeccCCCce-------eccCCCccccCCeeeccCCCCCCCccceeech
Confidence            999999999999999985  899999999999887654321       12346778888887752   224667899999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      +..+.+++.
T Consensus       204 G~il~ellt  212 (384)
T 4fr4_A          204 GVTAYELLR  212 (384)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988877764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.56  E-value=7.4e-15  Score=155.58  Aligned_cols=187  Identities=15%  Similarity=0.155  Sum_probs=111.4

Q ss_pred             cccccccccEEEEEEEC--Ce---eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--GE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G~---~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|++.  ++   .||||+.++.....                                  +-.+.+.+
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~   74 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS----------------------------------SDIEEFLR   74 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC------C----------------------------------HHHHHHHH
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH----------------------------------HHHHHHHH
Confidence            68999999999999982  33   89999986632111                                  00122445


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCC------eEEEEeecCCCchhhhhhhhhc-----CCCHHHHHHHH--HHHH
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTP------QILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA--VESY  440 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~------~vLVME~ieG~~L~d~~~l~~~-----g~d~~~la~~l--v~~~  440 (760)
                      |++.+.++    .+..-+.+-.++.. ...      .+++|||++|++|.++......     .++...+...+  +-..
T Consensus        75 E~~~l~~l----~h~~iv~~~~~~~~-~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a  149 (323)
T 3qup_A           75 EAACMKEF----DHPHVAKLVGVSLR-SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACG  149 (323)
T ss_dssp             HHHHHTTC----CCTTBCCCCEEEEC-C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC----CCCceehhhceeec-cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHH
Confidence            65555544    22222333333322 122      2899999999999987643321     24444433332  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      +..+|..|++|+|+||.||+++.  ++.++|+|||++..+.........    ......+.+++++...-+..++..|++
T Consensus       150 l~~LH~~~ivH~Dikp~NIli~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~  223 (323)
T 3qup_A          150 MEYLSSRNFIHRDLAARNCMLAE--DMTVCVADFGLSRKIYSGDYYRQG----CASKLPVKWLALESLADNLYTVHSDVW  223 (323)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHcCCcccCCCCcceEEEcC--CCCEEEeecccccccccccccccc----ccccCcccccCchhhcCCCCCCccchh
Confidence            78899999999999999999985  789999999999877554321111    112234567777777766667778999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      ++...+.+++
T Consensus       224 slG~il~ell  233 (323)
T 3qup_A          224 AFGVTMWEIM  233 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9998776654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.56  E-value=1.4e-15  Score=162.76  Aligned_cols=186  Identities=19%  Similarity=0.220  Sum_probs=121.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-..                                   +....+.+|+.
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~~~~~~~~E~~   57 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-----------------------------------DCPENIKKEIC   57 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------CHHHHHH
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEccccc-----------------------------------chHHHHHHHHH
Confidence            6899999999999998  5999999997652110                                   01112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+-. +....+..++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        58 ~l~~l----~hpnIv~~~~-~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dl  131 (323)
T 3tki_A           58 INKML----NHENVVKFYG-HRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDI  131 (323)
T ss_dssp             HHHHC----CCTTBCCEEE-EEECSSEEEEEEECCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhC----CCCCCCeEEE-EEecCCeEEEEEEcCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccccc
Confidence            55544    2222222222 223445679999999999998875422 224443333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++..+........    .....+++.++++++...+.. +...|++++...+.+++.
T Consensus       132 kp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~  203 (323)
T 3tki_A          132 KPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA  203 (323)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHEEEeC--CCCEEEEEeeccceeccCCcccc----cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHh
Confidence            999999985  78999999999987643321110    011245677788888765433 445799999887776654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.56  E-value=9.1e-15  Score=151.27  Aligned_cols=188  Identities=16%  Similarity=0.101  Sum_probs=124.1

Q ss_pred             hhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       292 iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      +...|. .+.||.|++|+||+|+.  +++.||+|+..+...+.                                    .
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~------------------------------------~   50 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED------------------------------------V   50 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC------------------------------------H
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch------------------------------------H
Confidence            334443 36899999999999999  47899999876532111                                    1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI  444 (760)
                      ..+.+|+..+.++    . +++  +++++.  ......++||||++|.+|.+..... ..++...+...+  +-..+..+
T Consensus        51 ~~~~~E~~~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~l  122 (277)
T 3f3z_A           51 DRFKQEIEIMKSL----D-HPN--IIRLYETFEDNTDIYLVMELCTGGELFERVVHK-RVFRESDAARIMKDVLSAVAYC  122 (277)
T ss_dssp             HHHHHHHHHHHTC----C-CTT--BCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC----C-CCC--EeeEEEEEecCCeEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            1234555555544    2 233  233332  3345679999999999998865332 224444333332  22347889


Q ss_pred             HhCCccccCCCCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  523 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~  523 (760)
                      |..|++|+|+||.||++.. ..++.++|+|||++..+.+....       ....+++.++++++.. +..++..|++++.
T Consensus       123 H~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~Di~slG  194 (277)
T 3f3z_A          123 HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM-------RTKVGTPYYVSPQVLE-GLYGPECDEWSAG  194 (277)
T ss_dssp             HHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTTHHHHHHH
T ss_pred             HHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch-------hccCCCCCccChHHhc-ccCCchhhehhHH
Confidence            9999999999999999932 13688999999999887654211       1123556677777664 4467888999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      ..+.+++.
T Consensus       195 ~~l~~l~~  202 (277)
T 3f3z_A          195 VMMYVLLC  202 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.56  E-value=3.2e-15  Score=156.07  Aligned_cols=185  Identities=16%  Similarity=0.084  Sum_probs=116.8

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+..+.-...                                       ...|...+
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~e~~~~   54 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKS---------------------------------------WFRETELY   54 (301)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEECGGGHHH---------------------------------------HHHHHHHH
T ss_pred             EeeccCCCcEEEEEEECCEEEEEEEeccccchh---------------------------------------hHHHHHHH
Confidence            689999999999999999999999976531111                                       11122112


Q ss_pred             HHHHHhcCCCCceeeceeeec---cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH--------
Q 004334          379 ELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL--------  445 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e---~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~--------  445 (760)
                      ...  .+.+..-+.+-..+..   .....++||||++|++|.++...  ..++...+...+  +...+..+|        
T Consensus        55 ~~~--~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~  130 (301)
T 3q4u_A           55 NTV--MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQG  130 (301)
T ss_dssp             HHT--CCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTC
T ss_pred             HHh--hccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            111  1222222222222211   12346899999999999997643  334444433332  233488899        


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC------CCCCCh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL------VPTGDT  519 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~------~~~~D~  519 (760)
                      ..|++|+|+||.||+++.  ++.++|+|||++..++........  -.....+++.++++++..-+..      ++..|+
T Consensus       131 ~~~ivH~Dlkp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Dv  206 (301)
T 3q4u_A          131 KPAIAHRDLKSKNILVKK--NGQCCIADLGLAVMHSQSTNQLDV--GNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDI  206 (301)
T ss_dssp             BCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEEEC--CCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHH
T ss_pred             CCCeecCCCChHhEEEcC--CCCEEEeeCCCeeecccccccccc--cccccccccceeChhhhcCcCCCCcccCCchhhH
Confidence            999999999999999985  789999999998766443211000  0000135677888888765422      235688


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++.-.+.+++
T Consensus       207 wslG~il~el~  217 (301)
T 3q4u_A          207 WAFGLVLWEVA  217 (301)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887776655

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.56  E-value=6.1e-15  Score=153.38  Aligned_cols=184  Identities=16%  Similarity=0.149  Sum_probs=125.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.....                                 .+....+.+|+.
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   66 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEK---------------------------------EGVEHQLRREIE   66 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH---------------------------------TTCHHHHHHHHH
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccccch---------------------------------HHHHHHHHHHHH
Confidence            6899999999999999  58999999876521000                                 001123445655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.+ .......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        67 ~l~~l----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  140 (284)
T 2vgo_A           67 IQSHL----RHPNILRMYNY-FHDRKRIYLMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHERKVIHRDI  140 (284)
T ss_dssp             HHHTC----CCTTBCCEEEE-EECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCC
T ss_pred             HHhcC----CCCCEeeEEEE-EEcCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            55544    22222222222 23345679999999999998865432 234444333332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.  ++.++|+|||++.........        ...++..++++++...+..++..|++++...+.+++.
T Consensus       141 ~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  207 (284)
T 2vgo_A          141 KPENLLMGY--KGELKIADFGWSVHAPSLRRR--------TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLV  207 (284)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECSSSCBC--------CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEcC--CCCEEEecccccccCcccccc--------cccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHH
Confidence            999999985  789999999998776543211        1246777888888877777788899999987766653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.56  E-value=2.6e-15  Score=156.56  Aligned_cols=186  Identities=15%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                                      ..+.+|.+
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------~~~~~e~~   57 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--------------------------------------PQLRDEYR   57 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS--------------------------------------CCHHHHHH
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeccCCcc--------------------------------------HHHHHHHH
Confidence            6899999999999997  6999999987542110                                      01233444


Q ss_pred             HHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHa  452 (760)
                      .+.++.    +++.  +|.++  .......++||||+ |.+|.++.......++...+...+.  -..+..+|..|++|+
T Consensus        58 ~~~~l~----~~~~--i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~  130 (298)
T 1csn_A           58 TYKLLA----GCTG--IPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYR  130 (298)
T ss_dssp             HHHHTT----TCTT--CCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             HHHHHh----cCCC--CCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecC
Confidence            444442    2222  23333  23455679999999 9999997654333355544443332  234788999999999


Q ss_pred             CCCCCcEEEeccCCC-----cEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGG-----RLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       453 DpHPGNILV~~~~~g-----~l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~  526 (760)
                      |+||.||+++.  ++     .++|+|||++..+.......... .......+++.+++++...-+..++..|++++...+
T Consensus       131 Dlkp~NIl~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  208 (298)
T 1csn_A          131 DIKPDNFLIGR--PNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVF  208 (298)
T ss_dssp             CCCGGGEEECC--SSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCHHHEEecc--CCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHH
Confidence            99999999975  44     39999999998775432110000 000112356777888887766667778999998877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       209 ~el~~  213 (298)
T 1csn_A          209 MYFLR  213 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            76653

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.56  E-value=5.7e-15  Score=152.94  Aligned_cols=182  Identities=16%  Similarity=0.174  Sum_probs=122.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+||+|+. +++.||||+.+++...                                     ...+.+|+..
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-------------------------------------~~~~~~E~~~   61 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS-------------------------------------PDAFLAEANL   61 (279)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSC-------------------------------------HHHHHHHHHH
T ss_pred             eeecCCCCeEEEEEEEcCCcEEEEEEecCCccc-------------------------------------HHHHHHHHHH
Confidence            6899999999999999 5789999988763211                                     0123456666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+..-+.+..++  .....+++|||++|++|.++..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        62 l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~di  135 (279)
T 1qpc_A           62 MKQL----QHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDL  135 (279)
T ss_dssp             HHHC----CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHhC----CCcCcceEEEEE--cCCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCC
Confidence            6555    222223333332  2355799999999999998764321 234444443332  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++.++|+|||++..+.......     .....++..+++++....+..++..|++++...+.+++
T Consensus       136 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  204 (279)
T 1qpc_A          136 RAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV  204 (279)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             CHhhEEEcC--CCCEEECCCcccccccCccccc-----ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHH
Confidence            999999985  7899999999998875432110     00112334567777777666667789999887776654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.56  E-value=4.8e-15  Score=159.83  Aligned_cols=182  Identities=16%  Similarity=0.157  Sum_probs=122.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                   ....+.+|+.
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------~~~~~~~E~~   83 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRNQIIRELQ   83 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHH-----------------------------------HHHHHHHHHG
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccccCHH-----------------------------------HHHHHHHHHH
Confidence            6899999999999999  59999999987753221                                   1122344544


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC-CccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH-GFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~-GffHaD  453 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.++.... ...+...+...+  +-..+..+|.. |++|+|
T Consensus        84 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~d  157 (360)
T 3eqc_A           84 VLHEC----NSPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREKHKIMHRD  157 (360)
T ss_dssp             GGGGC----CCTTBCCEEEEE-EETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             HHHHC----CCCCEEEEeEEE-EECCEEEEEEECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCC
Confidence            44433    222222222222 3345679999999999999876432 224433333322  22347788874 999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..+......        ...+++.++++++...+..++..|++++...+.+++.
T Consensus       158 lkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  225 (360)
T 3eqc_A          158 VKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV  225 (360)
T ss_dssp             CSGGGEEECT--TCCEEECCCCCCHHHHHHC------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHEEECC--CCCEEEEECCCCccccccccc--------CCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHh
Confidence            9999999986  789999999998765433221        1246677788888776666677899999988777654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.56  E-value=1.3e-14  Score=150.48  Aligned_cols=186  Identities=13%  Similarity=0.106  Sum_probs=124.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.....                                  +....+.+|+.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~e~~   57 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA----------------------------------RDFQKLEREAR   57 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCH----------------------------------HHHHHHHHHHH
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  59999999976531110                                  11123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+-.++ ...+..+++|||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        58 ~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di  131 (284)
T 3kk8_A           58 ICRKLQ----HPNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSNGIVHRNL  131 (284)
T ss_dssp             HHHHCC----CTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHHcC----CCCcCeEEEEE-EcCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCC
Confidence            666652    22222222222 3345569999999999997754322 223443333322  223478899999999999


Q ss_pred             CCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++... ++.++|+|||++...+.....       ....+++.++++++...+..++..|++++...+.+++.
T Consensus       132 kp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~  202 (284)
T 3kk8_A          132 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV  202 (284)
T ss_dssp             CGGGEEESSSSTTCCEEECCCTTCEECCSSCBC-------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEecCCCCCcEEEeeceeeEEcccCccc-------cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHH
Confidence            99999997521 245999999999877654321       11246777888888877766777899999887766553

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.56  E-value=3.3e-15  Score=156.32  Aligned_cols=189  Identities=18%  Similarity=0.173  Sum_probs=122.5

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|++      +|+.||||+.++.....                           .        ...+.
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------~--------~~~~~   71 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN---------------------------H--------IADLK   71 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----C---------------------------C--------HHHHH
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccccch---------------------------h--------HHHHH
Confidence            6899999999999994      58999999987632110                           0        11234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|+..+.++    .+..-+.+-.++... ....++||||++|++|.++.......++...+...+  +-..+..+|..|+
T Consensus        72 ~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  147 (302)
T 4e5w_A           72 KEIEILRNL----YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY  147 (302)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhC----CCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCc
Confidence            555555544    222223333333222 144689999999999999864444445554444333  2334888999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++.  ++.++|+|||++..+........   ......++..++++++..-+..++..|++++...+.++
T Consensus       148 ~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  222 (302)
T 4e5w_A          148 VHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYYT---VKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHEL  222 (302)
T ss_dssp             ECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCCEEE---CCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             ccCCCchheEEEcC--CCCEEECcccccccccCCCccee---ccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHH
Confidence            99999999999986  78999999999987765321000   00011234446677766655556677999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       223 ~~  224 (302)
T 4e5w_A          223 LT  224 (302)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=152.73  Aligned_cols=184  Identities=14%  Similarity=0.147  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-...                                     ..+.+|..
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------~~~~~e~~   72 (326)
T 2x7f_A           30 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-------------------------------------EEIKQEIN   72 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTT-------------------------------------HHHHHHHH
T ss_pred             EEeccCCCEEEEEEEECCCCCeEEEEEEecCcccH-------------------------------------HHHHHHHH
Confidence            6899999999999999  69999999976531110                                     12334555


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeecc-----CCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++.    ++++ +.+-..+...     ....++||||++|++|.++.... ...++...+...+  +-..+..+|..
T Consensus        73 ~l~~l~----~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  148 (326)
T 2x7f_A           73 MLKKYS----HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH  148 (326)
T ss_dssp             HHHHHC----CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcc----CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            555442    2222 2222222221     34679999999999999876432 2334444433332  23447889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCChHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAV  522 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-----lG~~~~~~D~~al  522 (760)
                      |++|+|+||+||+++.  ++.++|+|||++..++.....      .....++..++++++..     -+..++..|++++
T Consensus       149 ~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  220 (326)
T 2x7f_A          149 KVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGR------RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL  220 (326)
T ss_dssp             TCCCCCCSGGGEEECT--TCCEEECCCTTTC-------------------CCGGGCCHHHHC--------CCTTHHHHHH
T ss_pred             CccccCCcHHHEEEcC--CCCEEEeeCcCceecCcCccc------cccccCCccccChhhhccccccCcCCCccchHHHH
Confidence            9999999999999985  889999999999877543211      11123566777777764     3445677899999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      ...+.+++.
T Consensus       221 G~il~~l~~  229 (326)
T 2x7f_A          221 GITAIEMAE  229 (326)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            987776653

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.55  E-value=2.6e-14  Score=148.01  Aligned_cols=188  Identities=18%  Similarity=0.193  Sum_probs=124.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                     . .....        ...+.+|+.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------~-~~~~~--------~~~~~~E~~   60 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSS---------------------S-RRGVS--------REEIEREVN   60 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT---------------------C-SSSBC--------HHHHHHHHH
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhccccc---------------------c-ccchH--------HHHHHHHHH
Confidence            6899999999999999  59999999876632111                     0 00000        123455666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+-.++ ......++||||++|.+|.++... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        61 ~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  134 (283)
T 3bhy_A           61 ILREIR----HPNIITLHDIF-ENKTDVVLILELVSGGELFDFLAE-KESLTEDEATQFLKQILDGVHYLHSKRIAHFDL  134 (283)
T ss_dssp             HHHHCC----CTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhCC----CCCeeehhhee-cCCCeEEEEEeecCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCC
Confidence            666552    22222222222 345667999999999999987642 2234444433332  223478899999999999


Q ss_pred             CCCcEEEeccCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++    +++|+|||++..+......       ....+++.++++++...+..++..|++++...+.+++
T Consensus       135 ~p~Nil~~~--~~~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  205 (283)
T 3bhy_A          135 KPENIMLLD--KNVPNPRIKLIDFGIAHKIEAGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL  205 (283)
T ss_dssp             SGGGEEESC--SSSSSCCEEECCCTTCEECC---------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ChHHEEEec--CCCCCCceEEEecccceeccCCCcc-------cccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHH
Confidence            999999975  44    7999999999988654321       1124677788888887777777889999988776655


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       206 ~  206 (283)
T 3bhy_A          206 S  206 (283)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=1.2e-14  Score=159.25  Aligned_cols=190  Identities=14%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             cccccccccEEEEEEE---CC--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|++   ++  ..||||+.+......                                   ....+.+
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~  139 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG-----------------------------------EVSQFLT  139 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSH-----------------------------------HHHHHHH
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHH-----------------------------------HHHHHHH
Confidence            5799999999999997   23  468999875421110                                   0112344


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+-.++.+.....++||||++|++|.++........+...+...+  +...+..+|..|++|
T Consensus       140 E~~il~~l----~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH  215 (373)
T 3c1x_A          140 EGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVH  215 (373)
T ss_dssp             HHTTSTTC----CCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEec
Confidence            54444433    233333333333334456799999999999999875444444544444332  334588899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||.||+++.  ++.++|+|||++..+..........  ..-....+.+++++....+..++..|++++...+.+++.
T Consensus       216 rDlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt  291 (373)
T 3c1x_A          216 RDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT  291 (373)
T ss_dssp             SCCCGGGEEECT--TCCEEECCC-----------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CccchheEEECC--CCCEEEeeccccccccccccccccc--cCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999999985  7899999999998775543211110  011223456788888877777778899999987766653

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.55  E-value=1.1e-14  Score=150.50  Aligned_cols=179  Identities=16%  Similarity=0.136  Sum_probs=122.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|+||+|+.  +|+.||||+.+.... .+                                       .+|+.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~---------------------------------------~~e~~   56 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNE-KA---------------------------------------EREVK   56 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEEEEEECCSG-GG---------------------------------------HHHHH
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEEEEeccccH-HH---------------------------------------HHHHH
Confidence            6899999999999999  599999999876421 11                                       23333


Q ss_pred             HHHHHHHhcCCCCceeeceeeec---------------cCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE---------------YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VE  438 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e---------------~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~  438 (760)
                      .+.++    .+..-+.+..++..               .....++||||++|++|.++..... ..++...+...+  +-
T Consensus        57 ~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~  132 (284)
T 2a19_B           57 ALAKL----DHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQIT  132 (284)
T ss_dssp             HHHHC----CCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHH
T ss_pred             HHHhC----CCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence            34333    22222333333321               1233689999999999999764332 334444333322  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|+||+||++++  ++.++|+|||++..+......       ....+++.+++++...-+..++..|
T Consensus       133 ~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~D  203 (284)
T 2a19_B          133 KGVDYIHSKKLINRDLKPSNIFLVD--TKQVKIGDFGLVTSLKNDGKR-------TRSKGTLRYMSPEQISSQDYGKEVD  203 (284)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEESSCCSCC-------CCCCSCCTTSCHHHHHCSCCCTHHH
T ss_pred             HHHHHHHhCCeeeccCCHHHEEEcC--CCCEEECcchhheeccccccc-------cccCCcccccChhhhccCCCcchhh
Confidence            3478899999999999999999986  789999999999887654211       1123566778888887776777889


Q ss_pred             hHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFL  530 (760)
Q Consensus       519 ~~al~~~~~~~l  530 (760)
                      ++++...+.+++
T Consensus       204 i~slG~il~~l~  215 (284)
T 2a19_B          204 LYALGLILAELL  215 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999988776665

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.55  E-value=9.8e-15  Score=152.62  Aligned_cols=185  Identities=13%  Similarity=0.124  Sum_probs=112.4

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||+|++|.||+|+..+ .||||+.+......                                  .....+.+|+..+
T Consensus        30 ~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~~l   74 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP----------------------------------QQLQAFKNEVGVL   74 (289)
T ss_dssp             EEEEECSSEEEEEEESSS-EEEEEEESCSSCCH----------------------------------HHHHHHHHHHHHH
T ss_pred             eEecCCCCeEEEEEEEcC-ceEEEEEeccCCCH----------------------------------HHHHHHHHHHHHH
Confidence            689999999999999865 49999986532211                                  1112234555555


Q ss_pred             HHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++    . ++++  ..++. ......++||||++|.+|.+........++...+...+  +-..+..+|..|++|+|+|
T Consensus        75 ~~l----~-h~~i--v~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlk  147 (289)
T 3og7_A           75 RKT----R-HVNI--LLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLK  147 (289)
T ss_dssp             TTC----C-CTTB--CCEEEEECSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HhC----C-CCcE--EEEEeeccCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence            443    2 2222  23332 23456799999999999988764444445544443332  2234788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.||+++.  +++++|+|||++...+.......    .....+++.++++++..   .+..+...|++++...+.+++.
T Consensus       148 p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  220 (289)
T 3og7_A          148 SNNIFLHE--DNTVKIGDFGLATEKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT  220 (289)
T ss_dssp             GGGEEEET--TTEEEECCCC----------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHH
T ss_pred             cceEEECC--CCCEEEccceecccccccccccc----ccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHH
Confidence            99999986  78999999999987654322111    11123566777777765   3334446789998877766553

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.55  E-value=2.1e-14  Score=151.35  Aligned_cols=190  Identities=15%  Similarity=0.110  Sum_probs=117.0

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+.+..-...                                    ...+.+|+
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------~~~~~~E~   61 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI------------------------------------RSRVFREV   61 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCC------------------------------------HHHHHHHH
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchh------------------------------------HHHHHHHH
Confidence            36799999999999998  69999999976531110                                    11233454


Q ss_pred             HHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          376 ANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ..+.++   . ++++ +.+-.++ ......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        62 ~~l~~~---~-~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~  135 (316)
T 2ac3_A           62 EMLYQC---Q-GHRNVLELIEFF-EEEDRFYLVFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNKGIAHR  135 (316)
T ss_dssp             HHHHHT---C-CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHh---c-CCCCeeeEEEEE-eeCCEEEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCceeC
Confidence            444432   1 2333 2222222 3346679999999999999876432 223433333222  2344788999999999


Q ss_pred             CCCCCcEEEeccCCC---cEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCChHHHH
Q 004334          453 DPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVR  523 (760)
Q Consensus       453 DpHPGNILV~~~~~g---~l~LiDFG~v~~l~~~~r~~-l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~~al~  523 (760)
                      |+||.||+++.  ++   .++|+|||++..+....... ....-.....++..++++++...     +..+...|++++.
T Consensus       136 dlkp~Nil~~~--~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG  213 (316)
T 2ac3_A          136 DLKPENILCEH--PNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLG  213 (316)
T ss_dssp             CCCGGGEEESC--SSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHH
T ss_pred             CCCHHHEEEcc--CCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHH
Confidence            99999999985  34   49999999988765322111 00000111235667777777653     3456778999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      -.+.+++.
T Consensus       214 ~il~~l~~  221 (316)
T 2ac3_A          214 VILYILLS  221 (316)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.55  E-value=1.2e-14  Score=149.93  Aligned_cols=182  Identities=20%  Similarity=0.205  Sum_probs=118.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+........                                  ...+.+|..
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~----------------------------------~~~~~~e~~   62 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVD----------------------------------EQNALREVY   62 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHH----------------------------------HHHHHHHHH
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccHH----------------------------------HHHHHHHHH
Confidence            6899999999999999  5999999998764322100                                  111233433


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++    .+++++ .+-.+ .......++||||++|++|.++.....   ..++...+...+  +-..+..+|..|++
T Consensus        63 ~~~~l----~~h~~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~iv  137 (289)
T 1x8b_A           63 AHAVL----GQHSHVVRYFSA-WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLV  137 (289)
T ss_dssp             HHHHS----CSCTTBCCEEEE-EEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHh----CCCCCeeeeeee-eecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            33332    123332 22222 234567799999999999999764321   224444433332  22347889999999


Q ss_pred             ccCCCCCcEEEecc-----------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-C
Q 004334          451 HADPHPGNIAVDDV-----------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-V  512 (760)
Q Consensus       451 HaDpHPGNILV~~~-----------------~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~  512 (760)
                      |+|+||.||+++..                 ....++|+|||.+..++....          ..++..++++++..-+ .
T Consensus       138 H~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~gt~~y~aPE~~~~~~~  207 (289)
T 1x8b_A          138 HMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQV----------EEGDSRFLANEVLQENYT  207 (289)
T ss_dssp             CSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCC----------CCCCGGGCCHHHHTTCCT
T ss_pred             ecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccc----------cCCCccccChhHhcCCCC
Confidence            99999999999741                 234799999999988765432          1366777888877644 2


Q ss_pred             CCCCCChHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~  529 (760)
                      .++..|++++...+.++
T Consensus       208 ~~~~~Di~slG~il~~l  224 (289)
T 1x8b_A          208 HLPKADIFALALTVVCA  224 (289)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHH
Confidence            23467888887665443

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.55  E-value=1.8e-14  Score=157.23  Aligned_cols=185  Identities=16%  Similarity=0.088  Sum_probs=122.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-                                     ........|.+
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------------------------------------~~~~~~~~e~~  102 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-------------------------------------AFLNQAQIEVR  102 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSSH-------------------------------------HHHHHHHHHHH
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-------------------------------------HHHHHHHHHHH
Confidence            6899999999999998  58999999986521                                     01112234555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHH--hCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQIL--SHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~--~~Gf  449 (760)
                      .++.+... .+.....++.++.  ......+|||||++| +|.++..... .+++...+...+  +...+..+|  ..|+
T Consensus       103 ~l~~l~~~-~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~i  180 (382)
T 2vx3_A          103 LLELMNKH-DTEMKYYIVHLKRHFMFRNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSI  180 (382)
T ss_dssp             HHHHHHHC-SSGGGGGBCCEEEEEEETTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCE
T ss_pred             HHHHHHhc-ccccceeEEEeeeeeccCCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCE
Confidence            55555321 1111122333332  334667999999987 7877654332 234443332222  223366677  5799


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.|||+....++.++|+|||++..++....         -..++..++++++..-+..++..|++++.-.+.++
T Consensus       181 vHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el  251 (382)
T 2vx3_A          181 IHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIY---------QYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEM  251 (382)
T ss_dssp             ECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             EcCCCCcccEEEecCCCCcEEEEeccCceecccccc---------cccCCccccChHHHcCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999643467899999999988765421         12456778888888776677788999999887766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       252 lt  253 (382)
T 2vx3_A          252 HT  253 (382)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.55  E-value=1.6e-14  Score=154.07  Aligned_cols=185  Identities=17%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+........                                  .....+.+|+.
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~   76 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDK----------------------------------MVKKIAMREIK   76 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCH----------------------------------HHHHHHHHHHH
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCch----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  49999999876532111                                  11223445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    +..-+.+-.++ ......++||||++|..+.++... ..+++...+...+.  -..+..+|..|++|+|+
T Consensus        77 ~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dl  150 (331)
T 4aaa_A           77 LLKQLR----HENLVNLLEVC-KKKKRWYLVFEFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDI  150 (331)
T ss_dssp             HHHHCC----CTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhhCC----CCCEeeEEEEe-ecCCEEEEEEecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCc
Confidence            666552    22222222222 334567999999999998886432 22345444433332  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++..+......      .....++..++++++...+ ..++..|++++...+.+++.
T Consensus       151 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  220 (331)
T 4aaa_A          151 KPENILVSQ--SGVVKLCDFGFARTLAAPGEV------YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFM  220 (331)
T ss_dssp             CGGGEEECT--TSCEEECCCTTC------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHH
T ss_pred             ChheEEEcC--CCcEEEEeCCCceeecCCccc------cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHh
Confidence            999999985  789999999999877543221      1112356667777777543 44666799999987776653

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.55  E-value=2.3e-15  Score=165.17  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=120.0

Q ss_pred             ccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .|+ .+.||.|++|+||+|+.  +|+.||||+.+......-.                                + ...+
T Consensus        39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~--------------------------------~-~~~~   85 (373)
T 2r5t_A           39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK--------------------------------E-EKHI   85 (373)
T ss_dssp             GEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-----------------------------------------
T ss_pred             heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH--------------------------------H-HHHH
Confidence            443 36899999999999999  5899999998653211100                                0 0001


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  447 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~  447 (760)
                      ..|...   +.+.. ++++  |++++.  ......+|||||++|++|.++.... ..+....+...  .+-..+..+|..
T Consensus        86 ~~e~~~---ll~~~-~hp~--Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~  158 (373)
T 2r5t_A           86 MSERNV---LLKNV-KHPF--LVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHSL  158 (373)
T ss_dssp             -----C---CBCCC-CCTT--BCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH---HHHhC-CCCC--CCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            111111   00111 2333  333332  3345679999999999998865422 22333332222  233447889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      |++|+|+||+||+++.  +|.++|+|||++.........      .....+++.+++++++.....+...|++++...+.
T Consensus       159 givHrDlkp~NIll~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  230 (373)
T 2r5t_A          159 NIVYRDLKPENILLDS--QGHIVLTDFGLCKENIEHNST------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLY  230 (373)
T ss_dssp             TCCCCCCCGGGEEECT--TSCEEECCCCBCGGGBCCCCC------CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             CceecCCCHHHEEECC--CCCEEEeeCccccccccCCCc------cccccCCccccCHHHhCCCCCCchhhhHHHHHHHH
Confidence            9999999999999985  899999999998763221100      01124677888888887666677889999998877


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       231 ell~  234 (373)
T 2r5t_A          231 EMLY  234 (373)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            7653

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.55  E-value=2.8e-15  Score=170.05  Aligned_cols=186  Identities=18%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+.++.....                                 .+....+.+|+
T Consensus        21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~---------------------------------~~~~~~~~~Ei   67 (476)
T 2y94_A           21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS---------------------------------LDVVGKIRREI   67 (476)
T ss_dssp             EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTTHHHHHHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC---------------------------------HHHHHHHHHHH
Confidence            36899999999999998  59999999976521000                                 00112345566


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+    .+..-+.+-.++ ...+..+|||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|
T Consensus        68 ~~l~~l----~HpnIv~l~~~~-~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrD  141 (476)
T 2y94_A           68 QNLKLF----RHPHIIKLYQVI-STPSDIFMVMEYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHRHMVVHRD  141 (476)
T ss_dssp             HHHTTC----CCTTBCCEEEEE-ECSSEEEEEEECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHTTTEECSC
T ss_pred             HHHHhC----CCCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCCCccc
Confidence            655544    222223333332 334667999999999999987542 2224443333322  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++..+++...       .....+++.++++++...... ++..|+++++..+.+++.
T Consensus       142 Lkp~NIll~~--~~~vkL~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt  211 (476)
T 2y94_A          142 LKPENVLLDA--HMNAKIADFGLSNMMSDGEF-------LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC  211 (476)
T ss_dssp             CSGGGEEECT--TCCEEECCCSSCEECCTTCC-------BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHEEEec--CCCeEEEeccchhhcccccc-------ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhh
Confidence            9999999985  78999999999988765321       111246777888888765433 456799999988776653

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.55  E-value=1.2e-14  Score=161.85  Aligned_cols=191  Identities=13%  Similarity=0.092  Sum_probs=122.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|++
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~----------------------------------~~~~~~~~E~~   77 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDL----------------------------------IDCKRILREIT   77 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSH----------------------------------HHHHHHHHHHH
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCchhcCh----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  58999999986532211                                  01123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++.    +..-+.+-.++....    ...+|||||++| +|.++.... ..++...+...+  +-..++.+|..|++
T Consensus        78 ~l~~l~----h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~-~~l~~~~~~~i~~qil~aL~~LH~~giv  151 (432)
T 3n9x_A           78 ILNRLK----SDYIIRLYDLIIPDDLLKFDELYIVLEIADS-DLKKLFKTP-IFLTEEHIKTILYNLLLGENFIHESGII  151 (432)
T ss_dssp             HHHHCC----CTTBCCEEEECCCSCTTTCCCEEEEEECCSE-EHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHcC----CCCcceEEEEEecCCCCcCCeEEEEEecCCc-CHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            666652    322233333332221    457999999987 777765322 224444333332  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHH----------------HHHHHhhcCHHHHHHHHH-HcCCC
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFYGIYEKDADKVLQAMV-QMGVL  513 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~----------------l~~al~~~D~~~v~~~l~-~lG~~  513 (760)
                      |+|+||+|||++.  ++.++|+|||++..+..........                -...-..++..+++++++ ..+..
T Consensus       152 HrDlkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~  229 (432)
T 3n9x_A          152 HRDLKPANCLLNQ--DCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENY  229 (432)
T ss_dssp             CCCCCGGGEEECT--TCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCC
T ss_pred             CCCCCHHHeEECC--CCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCC
Confidence            9999999999985  8899999999999886543221110                011223456677888875 34446


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l~  531 (760)
                      +...|+++++-.+.+++.
T Consensus       230 ~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          230 TKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             CTHHHHHHHHHHHHHHHT
T ss_pred             CcccccchHHHHHHHHHh
Confidence            677899999988887763

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.55  E-value=1.5e-14  Score=151.26  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=117.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||+|+..+.-.+.                            .        ..+.+|+.
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----------------------------~--------~~~~~e~~   68 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE----------------------------L--------EDYIVEIE   68 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC----CC----------------------------H--------HHHHHHHH
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHH----------------------------H--------HHHHHHHH
Confidence            5799999999999999  48999999876531111                            1        12334555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.++.......++...+...+.  -..+..+|..|++|+|+
T Consensus        69 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  143 (302)
T 2j7t_A           69 ILATC----DHPYIVKLLGAY-YHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDL  143 (302)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhcC----CCCCEeeeeeee-eeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            55544    222222222222 334577999999999999987644334455554443332  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCChHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-----lG~~~~~~D~~al~~~~~~~  529 (760)
                      ||.||+++.  ++.++|+|||++.........      .....++..++++++..     -+..+...|++++...+.++
T Consensus       144 kp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l  215 (302)
T 2j7t_A          144 KAGNVLMTL--EGDIRLADFGVSAKNLKTLQK------RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM  215 (302)
T ss_dssp             SGGGEEECT--TSCEEECCCHHHHHHHHHHHC-----------CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEEECCCCccccccccc------cccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHH
Confidence            999999985  789999999987543222111      01123556667777663     34455677999998877665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       216 ~  216 (302)
T 2j7t_A          216 A  216 (302)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.55  E-value=5.6e-15  Score=174.29  Aligned_cols=187  Identities=17%  Similarity=0.093  Sum_probs=124.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+.....                ..         .+.        ..+..|..
T Consensus       347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~----------------~~---------~~~--------~~~~~E~~  393 (674)
T 3pfq_A          347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI----------------QD---------DDV--------ECTMVEKR  393 (674)
T ss_dssp             EESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHH----------------HT---------TTT--------HHHHHHHH
T ss_pred             EEEccCCCEEEEEEEECCCCcEEEEEEEeccccc----------------cH---------HHH--------HHHHHHHH
Confidence            6899999999999999  5899999997642100                00         000        11223333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..    ..+++.+.....+.+.....+|||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus       394 ~l~~----~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDL  468 (674)
T 3pfq_A          394 VLAL----PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDL  468 (674)
T ss_dssp             HHTC----TTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTSEECCCC
T ss_pred             HHHh----ccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccC
Confidence            3322    223444332222333445679999999999998865432 234433333222  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++.........      .....+++.+++++++..+..+...|++++...+++++.
T Consensus       469 Kp~NILl~~--~g~ikL~DFGla~~~~~~~~~------~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyellt  537 (674)
T 3pfq_A          469 KLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  537 (674)
T ss_dssp             CSTTEEECS--SSCEEECCCTTCEECCCTTCC------BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEEcC--CCcEEEeecceeeccccCCcc------cccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHc
Confidence            999999986  899999999999864322110      112346888999999887777888899999988877664

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=1.1e-14  Score=157.73  Aligned_cols=189  Identities=16%  Similarity=0.156  Sum_probs=123.4

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|+.     +|+.||||+.+......                .        ....        ..+.+
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~----------------~--------~~~~--------~~~~~  107 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ----------------K--------AKTT--------EHTRT  107 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE----------------E--------ESSG--------GGCCC
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh----------------h--------hhHH--------HHHHH
Confidence            6899999999999998     58999999976532100                0        0000        01123


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |...+.++.    +++++....-+.......+|||||++|++|.++.... ..++...+...+  +-..+..+|..|++|
T Consensus       108 E~~~l~~l~----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH  182 (355)
T 1vzo_A          108 ERQVLEHIR----QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLHKLGIIY  182 (355)
T ss_dssp             HHHHHHHHH----TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcc----CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            444444443    2333322222233445679999999999999876432 234444443332  334478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~~~~~~  529 (760)
                      +|+||.||+++.  +++++|+|||++..+........     .-..++..++++++...+  ..++..|++++...+.++
T Consensus       183 ~Dlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~el  255 (355)
T 1vzo_A          183 RDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYEL  255 (355)
T ss_dssp             CCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEECC--CCcEEEeeCCCCeecccCCCCcc-----cCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHH
Confidence            999999999985  88999999999988765432211     112467778888887643  235567999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       256 l~  257 (355)
T 1vzo_A          256 LT  257 (355)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.55  E-value=1.2e-14  Score=154.39  Aligned_cols=188  Identities=15%  Similarity=0.188  Sum_probs=125.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                     . .....        ...+.+|+.
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------~-~~~~~--------~~~~~~E~~   67 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA---------------------S-RRGVS--------REEIEREVS   67 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSS---------------------C-SSSBC--------HHHHHHHHH
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEecccccc---------------------c-ccchh--------HHHHHHHHH
Confidence            6899999999999999  59999999987642211                     0 00000        122445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ ......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        68 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~di  141 (321)
T 2a2a_A           68 ILRQV----LHHNVITLHDVY-ENRTDVVLILELVSGGELFDFLAQK-ESLSEEEATSFIKQILDGVNYLHTKKIAHFDL  141 (321)
T ss_dssp             HHHHC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHTC-SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCcceEEEEE-ecCCEEEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            66555    222222222222 3445679999999999999876422 223333333322  223478899999999999


Q ss_pred             CCCcEEEeccCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g----~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||+||+++.  ++    .++|+|||++..+......       .-..+++.++++++...+..++..|++++...+.+++
T Consensus       142 kp~NIl~~~--~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  212 (321)
T 2a2a_A          142 KPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL  212 (321)
T ss_dssp             SGGGEEESC--TTSSSCCEEECCCTTCEECCTTCCC-------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ChHHEEEec--CCCCcCCEEEccCccceecCccccc-------cccCCCCCccCcccccCCCCCCccccHHHHHHHHHHH
Confidence            999999985  44    7999999999887653210       1123677788888887776777889999988776665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       213 ~  213 (321)
T 2a2a_A          213 S  213 (321)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.55  E-value=2.4e-14  Score=159.59  Aligned_cols=183  Identities=16%  Similarity=0.165  Sum_probs=125.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-                                     .....+.+|.+
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-------------------------------------~~~~~~~~E~~  145 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-------------------------------------RFHRQAAEEIR  145 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSCH-------------------------------------HHHHHHHHHHH
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCcc-------------------------------------chHHHHHHHHH
Confidence            6899999999999998  58999999987531                                     11122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .++.++..- ......+..++..  .....++||||++| +|.++..... .+++...+...+  +-..+..+|..|++|
T Consensus       146 ~l~~l~~~~-~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH  223 (429)
T 3kvw_A          146 ILEHLRKQD-KDNTMNVIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIH  223 (429)
T ss_dssp             HHHHHHTTC-TTSCSCBCCEEEEEEETTEEEEEECCCCC-BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEEC
T ss_pred             HHHHHhhcc-ccCCcCEEEEEeecccCCeEEEEEeccCC-CHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            666664321 1222334444432  34567999999986 6666543322 234544433322  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~--l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+||.|||++.  ++.  ++|+|||++........         ...++..+++++++.-+..++..|++++.-.+.++
T Consensus       224 rDlKp~NILl~~--~~~~~vkL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  292 (429)
T 3kvw_A          224 CDLKPENILLKQ--QGRSGIKVIDFGSSCYEHQRVY---------TYIQSRFYRAPEVILGARYGMPIDMWSLGCILAEL  292 (429)
T ss_dssp             SCCSGGGEEESS--TTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHeEEcc--CCCcceEEeecccceecCCccc---------ccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHH
Confidence            999999999986  555  99999999977654321         12356778888888777777888999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       293 lt  294 (429)
T 3kvw_A          293 LT  294 (429)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.55  E-value=4.2e-14  Score=149.40  Aligned_cols=185  Identities=12%  Similarity=0.091  Sum_probs=125.0

Q ss_pred             cccccccccEEEEEEE---CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|.||+|+.   +|+.||||+.+..-                                     .....+.+|.
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~~~~~e~   62 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-------------------------------------RYCEAARSEI   62 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-------------------------------------HHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-------------------------------------chhHHHHHHH
Confidence            6899999999999987   58999999976521                                     1112344566


Q ss_pred             HHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +.+..+.+... .....+++++.  +.....++||||+ |.++.++..... ..++...+...+  +-..+..+|..|++
T Consensus        63 ~~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iv  140 (339)
T 1z57_A           63 QVLEHLNTTDP-NSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLT  140 (339)
T ss_dssp             HHHHHHHHHCT-TCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHhhhcCC-CCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            66666654321 11223344333  3345679999999 778877654322 234444433332  22347889999999


Q ss_pred             ccCCCCCcEEEeccC-----------------CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          451 HADPHPGNIAVDDVN-----------------GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       451 HaDpHPGNILV~~~~-----------------~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      |+|+||+||+++...                 ++.++|+|||++...+....         ...++..++++++...+..
T Consensus       141 H~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~  211 (339)
T 1z57_A          141 HTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHS---------TLVSTRHYRAPEVILALGW  211 (339)
T ss_dssp             CCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCC---------SSCSCGGGCCHHHHTTSCC
T ss_pred             CCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccc---------cccCCccccChHHhhCCCC
Confidence            999999999997522                 56799999999987654321         1245677888888876666


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l~  531 (760)
                      ++..|++++.-.+.+++.
T Consensus       212 ~~~~Di~slG~il~el~~  229 (339)
T 1z57_A          212 SQPCDVWSIGCILIEYYL  229 (339)
T ss_dssp             CTHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHh
Confidence            778899999887766653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.55  E-value=1.5e-14  Score=150.50  Aligned_cols=189  Identities=19%  Similarity=0.173  Sum_probs=117.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-                                     +....+.+|+.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------------------------------------~~~~~~~~E~~   54 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-------------------------------------EKLSTILSEVM   54 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-------------------------------------HHHHHHHHHHH
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEeccH-------------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999875420                                     00112334554


Q ss_pred             HHHHHHHhcCCCCceeeceeeec------------cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE------------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  442 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e------------~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~  442 (760)
                      .+.++    .+..-+.+-..+.+            .....++||||++|++|.++........+...+...+  +-..+.
T Consensus        55 ~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~  130 (303)
T 1zy4_A           55 LLASL----NHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALS  130 (303)
T ss_dssp             HHTTC----CCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHhc----CchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHH
Confidence            44443    22222222222211            1345699999999999999765333333434333222  234478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHH--------HHHHHHhhcCHHHHHHHHHHc-CCC
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL--------EAFYGIYEKDADKVLQAMVQM-GVL  513 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~--------~l~~al~~~D~~~v~~~l~~l-G~~  513 (760)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-.        .-......++..++++++... +..
T Consensus       131 ~LH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  208 (303)
T 1zy4_A          131 YIHSQGIIHRDLKPMNIFIDE--SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHY  208 (303)
T ss_dssp             HHHHTTCCCSCCCGGGEEECT--TSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCC
T ss_pred             HHHhCCeecccCCHHhEEEcC--CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCC
Confidence            899999999999999999985  889999999999877543211000        000011224455677777653 356


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      ++..|++++.-.+.+++
T Consensus       209 ~~~~Di~slG~il~~l~  225 (303)
T 1zy4_A          209 NEKIDMYSLGIIFFEMI  225 (303)
T ss_dssp             CTHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHH
Confidence            67789999988776655

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.55  E-value=3.2e-15  Score=159.04  Aligned_cols=188  Identities=19%  Similarity=0.127  Sum_probs=114.1

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+.++.-....                                       ..|.. +
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~---------------------------------------~~e~~-~   58 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNF---------------------------------------INEKN-I   58 (336)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEEEGGGHHHH---------------------------------------HHHHH-H
T ss_pred             eecccCCCeEEEEEEECCeEEEEEEeeccchhhH---------------------------------------HHHHH-H
Confidence            6899999999999999999999999865321110                                       00100 0


Q ss_pred             HHHHHhcCCCCceeeceeeec--c--CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC-----
Q 004334          379 ELFASNFKDMDYVKVPTIFWE--Y--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH-----  447 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e--~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~-----  447 (760)
                      ..+ ..+.+...+.+...+..  .  ....+|||||++|++|.++.....  .+.......+  +-..+..+|..     
T Consensus        59 ~~~-~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH~~~~~~~  135 (336)
T 3g2f_A           59 YRV-PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLHTELPRGD  135 (336)
T ss_dssp             HTS-TTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCCGG
T ss_pred             HHH-HhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence            000 01222222222211111  1  123489999999999999764332  2333322222  23447889988     


Q ss_pred             ----CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHH--HHHHHHHHHhhcCHHHHHHHHHHcC-------CCC
Q 004334          448 ----GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE--GLLEAFYGIYEKDADKVLQAMVQMG-------VLV  514 (760)
Q Consensus       448 ----GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~--~l~~l~~al~~~D~~~v~~~l~~lG-------~~~  514 (760)
                          |++|+|+||.|||++.  ++.++|+|||++..+......  .-.........++..++++++..-+       ..+
T Consensus       136 ~~~~~ivH~Dikp~Nill~~--~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  213 (336)
T 3g2f_A          136 HYKPAISHRDLNSRNVLVKN--DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESAL  213 (336)
T ss_dssp             GCBCCEECSSCSGGGEEECT--TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHH
T ss_pred             ccccceeecccccceEEEcC--CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccc
Confidence                9999999999999985  789999999999887543110  0000111112467778888877542       122


Q ss_pred             CCCChHHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l~  531 (760)
                      +..|++++.-.+.+++.
T Consensus       214 ~~~DiwslG~il~ell~  230 (336)
T 3g2f_A          214 KQVDMYALGLIYWEIFM  230 (336)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHh
Confidence            34688888877766653

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=155.52  Aligned_cols=185  Identities=16%  Similarity=0.182  Sum_probs=119.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.. +|+.||||+........                                  +....+.+|+..
T Consensus        15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~~   60 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QTLDSYRNEIAY   60 (343)
T ss_dssp             EEESCCSSEEEEEEECTTSCEEEEEEEECTTCCH----------------------------------HHHHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEeCCCCEEEEEEeeccccch----------------------------------HHHHHHHHHHHH
Confidence            6899999999999999 78999999976532111                                  111234567777


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.++.+.   .++  +++++.  ......+|||| +.|++|.++.... ..++...+...+  +-..+..+|..|++|+|
T Consensus        61 l~~l~~~---~~~--iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~~iiHrD  133 (343)
T 3dbq_A           61 LNKLQQH---SDK--IIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSD  133 (343)
T ss_dssp             HHHHTTT---CTT--BCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHhhhhc---CCc--eEEEeeeEeeCCEEEEEEe-CCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            7777431   122  233332  33456799999 4677888865432 234443333222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCChHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGDTTAV  522 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----------G~~~~~~D~~al  522 (760)
                      +||.|||++   ++.++|+|||++..+.+.......    ....+++.++++++..-           +..++..|++++
T Consensus       134 ikp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Diwsl  206 (343)
T 3dbq_A          134 LKPANFLIV---DGMLKLIDFGIANQMQPDTTSVVK----DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  206 (343)
T ss_dssp             CCGGGEEEE---TTEEEECCCSSSCCC----------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHH
T ss_pred             CCcceEEEE---CCcEEEeecccccccCcccccccC----CCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHH
Confidence            999999996   688999999999988655332211    12246777778877653           445566799999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      ...+.+++.
T Consensus       207 G~il~ell~  215 (343)
T 3dbq_A          207 GCILYYMTY  215 (343)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887766653

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=8.6e-15  Score=152.68  Aligned_cols=186  Identities=13%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             cccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      ..||.|++|+||+|+.    +|+.||||+.++.....                                   ....+.+|
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~E   60 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------DTEEMMRE   60 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------HHHHHHHH
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchh-----------------------------------HHHHHHHH
Confidence            4899999999999986    47899999987742111                                   11234456


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHa  452 (760)
                      ++.+.++    .+..-+.+-.++  .....++||||++|++|.++.......++...+...+.  -..+..+|..|++|+
T Consensus        61 ~~~l~~l----~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~  134 (287)
T 1u59_A           61 AQIMHQL----DNPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHR  134 (287)
T ss_dssp             HHHHHHC----CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHhC----CCCCEeEEEEEe--cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeC
Confidence            6666655    222223333333  23567999999999999987643333455554443332  234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||.||+++.  ++.++|+|||++..+........   ......++..++++++...+..++..|++++...+.+++
T Consensus       135 dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  207 (287)
T 1u59_A          135 DLAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL  207 (287)
T ss_dssp             CCSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             CCchheEEEcC--CCCEEECcccceeeeccCcceee---ccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHH
Confidence            99999999986  78999999999988754321100   000112345567777776665667789999987776654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.54  E-value=4.4e-15  Score=160.03  Aligned_cols=197  Identities=12%  Similarity=0.062  Sum_probs=130.7

Q ss_pred             cccccccccEEEEEEE-C---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-K---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      +.||.|++|.||+|+. .         |+.||||+.+..  +.+..++.+++.+.                         
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~E~~~l~~l~-------------------------  100 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFNEQNFFQRAA-------------------------  100 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHHHHHHHHHHC-------------------------
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHHHHHHHHHhc-------------------------
Confidence            6899999999999998 2         789999998764  34445555444331                         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHH--HHHHH
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLE  442 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~L~  442 (760)
                            ..|+-++...+.+.+...+|.++...   ....+|||||+ |++|.++.... ...++...+...+.  -..+.
T Consensus       101 ------h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~  173 (352)
T 2jii_A          101 ------KPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALE  173 (352)
T ss_dssp             ------CHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             ------ccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHH
Confidence                  11222222334445556666665432   35669999999 99999976532 23455554444332  23478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCC--cEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g--~l~LiDFG~v~~l~~~~r~~l-~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      .+|..|++|+|+||.||+++.  ++  +++|+|||++..+.+...... .........+++.++++++..-+..++..|+
T Consensus       174 ~LH~~~ivH~Dikp~NIl~~~--~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  251 (352)
T 2jii_A          174 FLHENEYVHGNVTAENIFVDP--EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDL  251 (352)
T ss_dssp             HHHHTTCBCSCCCGGGEEEET--TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHH
T ss_pred             HHHhCCccCCCCCHHHEEEcC--CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhH
Confidence            899999999999999999985  66  899999999988765421100 0000011246677888888776666777899


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      +++.-.+.+++.
T Consensus       252 ~slG~il~el~~  263 (352)
T 2jii_A          252 QSLGYCMLKWLY  263 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999987776653

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.54  E-value=9.4e-15  Score=161.41  Aligned_cols=190  Identities=12%  Similarity=0.065  Sum_probs=120.1

Q ss_pred             hhhcccCc--cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          291 DVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       291 ~iF~~fd~--~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      .++..|..  +.||.|++|.||+|+.  +|+.||||+.+..  ..                                   
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~-----------------------------------  100 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--PK-----------------------------------  100 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--HH-----------------------------------
T ss_pred             cccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--hh-----------------------------------
Confidence            44454543  5799999999999999  5999999987541  00                                   


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHH--HHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESY  440 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~  440 (760)
                          +.+|...+.+.   ..+...+.+-.++...   ....+|||||++|++|.++..... ..++...+...+.  -..
T Consensus       101 ----~~~E~~~~~~~---~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~a  173 (400)
T 1nxk_A          101 ----ARREVELHWRA---SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA  173 (400)
T ss_dssp             ----HHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHh---cCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence                11222222221   1222223344444321   234689999999999998764322 2345444433332  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      +..+|..|++|+|+||+|||++.. +++.++|+|||++.........       ....++..+++++++..+..+...|+
T Consensus       174 L~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di  246 (400)
T 1nxk_A          174 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPEKYDKSCDM  246 (400)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------------CTTCCGGGSCCCCSSSHHHH
T ss_pred             HHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCcc-------ccCCCCCCccCHhhcCCCCCCCcccH
Confidence            788999999999999999999842 1578999999999987654321       11224556777777665666777899


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++++..+.+++.
T Consensus       247 wslG~il~ell~  258 (400)
T 1nxk_A          247 WSLGVIMYILLC  258 (400)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999988777664

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.54  E-value=2.2e-14  Score=165.13  Aligned_cols=169  Identities=15%  Similarity=0.094  Sum_probs=110.5

Q ss_pred             cCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +..+.||.|++|+||+|+..|+.|++|...+.....-..+                            -....+.+.+|+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~----------------------------~~~~~~~~~~E~  390 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLD----------------------------ENIRKSRTAREA  390 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSCHHHH----------------------------HHHHHHHHHHHH
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhh----------------------------hHHHHHHHHHHH
Confidence            3456899999999999988999999998766322110000                            011234467888


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      +.+.++.     ++++..|..|.......+|||||++|++|.++...      ...++..++. .+..+|..|++|+|+|
T Consensus       391 ~il~~l~-----h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~------~~~i~~qi~~-aL~~LH~~gIiHrDiK  458 (540)
T 3en9_A          391 RYLALVK-----DFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED------NLDIAYKIGE-IVGKLHKNDVIHNDLT  458 (540)
T ss_dssp             HHHHHGG-----GGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT------CTHHHHHHHH-HHHHHHHTTEECTTCC
T ss_pred             HHHHhcC-----CCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH------HHHHHHHHHH-HHHHHHHCcCccCCCC
Confidence            8888873     35566678887777788999999999999987532      2244444443 4788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMV  508 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~-~l~~al~~~D~~~v~~~l~  508 (760)
                      |+|||++   + +++|+|||++..+++....... ..+.....+++.++++++.
T Consensus       459 p~NILl~---~-~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~  508 (540)
T 3en9_A          459 TSNFIFD---K-DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIW  508 (540)
T ss_dssp             TTSEEES---S-SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHEEEC---C-eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHH
Confidence            9999997   3 9999999999998775433211 1111222345555555554

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.54  E-value=1.4e-14  Score=155.27  Aligned_cols=187  Identities=10%  Similarity=0.035  Sum_probs=124.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||+|+........                                 .+....+.+|+
T Consensus        46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~~~~~~E~   92 (335)
T 2owb_A           46 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQREKMSMEI   92 (335)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHHHHHHHHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcC---------------------------------HHHHHHHHHHH
Confidence            36899999999999999  58999999876532110                                 01122344555


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+    .+..-+.+-.++ ......++||||++|.+|.++.... ..++...+...+  +-..+..+|..|++|+|
T Consensus        93 ~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~d  166 (335)
T 2owb_A           93 SIHRSL----AHQHVVGFHGFF-EDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRNRVIHRD  166 (335)
T ss_dssp             HHHHTC----CCTTBCCEEEEE-ECSSEEEEEECCCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHHhC----CCCCCCeEEEEE-ecCCeEEEEEecCCCCCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCCEecC
Confidence            555544    222222322222 3345679999999999998875432 234444433332  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  ++.++|+|||++..+......      .....++..++++++......+...|++++...+.+++.
T Consensus       167 lkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  236 (335)
T 2owb_A          167 LKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV  236 (335)
T ss_dssp             CCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHH
T ss_pred             CCchhEEEcC--CCCEEEeeccCceecccCccc------ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHH
Confidence            9999999985  789999999999877532211      011235556777777776666777899999887766653

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=156.72  Aligned_cols=186  Identities=16%  Similarity=0.110  Sum_probs=123.3

Q ss_pred             cccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +.||.|++|.||+|+..         ++.||||+.++...+.                                   ...
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~  119 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK-----------------------------------DLS  119 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHH-----------------------------------HHH
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHH-----------------------------------HHH
Confidence            68999999999999962         3689999987642211                                   112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLG  433 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la  433 (760)
                      .+.+|++.+.++.    ++++ +.+-.+ .......++||||++|++|.++.....               ..++...+.
T Consensus       120 ~~~~E~~~l~~l~----~hpnIv~~~~~-~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  194 (382)
T 3tt0_A          120 DLISEMEMMKMIG----KHKNIINLLGA-CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV  194 (382)
T ss_dssp             HHHHHHHHHHHHC----CCTTBCCEEEE-ECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHhc----CCchhhhheee-eccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHH
Confidence            3445666666552    2233 222222 233456799999999999999764332               124444443


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004334          434 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  511 (760)
Q Consensus       434 ~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG  511 (760)
                      ..+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-    .....+.+.++++++..-+
T Consensus       195 ~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~  268 (382)
T 3tt0_A          195 SCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPEALFDR  268 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECSCSCCCCSSCCCTTCC----CTTCCCGGGGSCHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCCcceEEEcC--CCcEEEcccCccccccccccccc----ccCCCCCcceeCHHHhcCC
Confidence            333  233478899999999999999999985  78999999999987654321000    0011233457778877766


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 004334          512 VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       512 ~~~~~~D~~al~~~~~~~l  530 (760)
                      ..++..|++++...+.+++
T Consensus       269 ~~~~~~DiwslG~il~ell  287 (382)
T 3tt0_A          269 IYTHQSDVWSFGVLLWEIF  287 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHH
Confidence            6677789999988776654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.54  E-value=3.1e-14  Score=149.94  Aligned_cols=136  Identities=11%  Similarity=0.051  Sum_probs=92.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                                 .+....+.+|+.
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~e~~   83 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP---------------------------------DDVLQETLSRTL   83 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC---------------------------------HHHHHHHHHHHH
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcccccC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999999  49999999988743211                                 111223445555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.+ .+..+..++||||++|.+|.++...   +.....+...+  +-..+..+|..|++|+|+
T Consensus        84 ~l~~l----~hp~iv~~~~~-~~~~~~~~lv~e~~~g~~L~~~l~~---~~~~~~~~~i~~ql~~aL~~lH~~givH~Di  155 (286)
T 3uqc_A           84 RLSRI----DKPGVARVLDV-VHTRAGGLVVAEWIRGGSLQEVADT---SPSPVGAIRAMQSLAAAADAAHRAGVALSID  155 (286)
T ss_dssp             HHHTC----CCTTBCCEEEE-EEETTEEEEEEECCCEEEHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhcC----CCCCcceeeEE-EEECCcEEEEEEecCCCCHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHCCCccCCC
Confidence            55443    22222222222 2344667999999999999997632   23333333332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecce
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMM  477 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v  477 (760)
                      ||+||+++.  +|.++|.++|.+
T Consensus       156 kp~NIll~~--~g~~kl~~~~~~  176 (286)
T 3uqc_A          156 HPSRVRVSI--DGDVVLAYPATM  176 (286)
T ss_dssp             SGGGEEEET--TSCEEECSCCCC
T ss_pred             CcccEEEcC--CCCEEEEecccc
Confidence            999999986  889998877655

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.54  E-value=1.4e-14  Score=164.49  Aligned_cols=191  Identities=16%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+........                                      .+..|.
T Consensus        12 ~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------~~~~E~   53 (483)
T 3sv0_A           12 GRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHP--------------------------------------QLLYES   53 (483)
T ss_dssp             CCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSC--------------------------------------CHHHHH
T ss_pred             EEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccH--------------------------------------HHHHHH
Confidence            36899999999999998  59999999865421110                                      122344


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaD  453 (760)
                      +.+..+    .+.+.+.....+.......+|||||+ |.+|.++.......++...+...+.  -..+..+|..|++|+|
T Consensus        54 ~il~~L----~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrD  128 (483)
T 3sv0_A           54 KIYRIL----QGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRD  128 (483)
T ss_dssp             HHHHHT----TTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHHh----cCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecc
Confidence            444443    23344444455555566779999999 8999998754344455555444333  2348889999999999


Q ss_pred             CCCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l-~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.|||+.. ..++.++|+|||++..+........... ......++..++++++..-...+...|++++...+.+++.
T Consensus       129 IKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~ellt  208 (483)
T 3sv0_A          129 IKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLR  208 (483)
T ss_dssp             CCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence            9999999941 1378999999999987765321100000 0001245667788888776666677899999988777664

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.54  E-value=1.3e-14  Score=166.40  Aligned_cols=182  Identities=15%  Similarity=0.129  Sum_probs=126.8

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|++ .+..||||+.+++...                                     .+.+.+|++.
T Consensus       273 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-------------------------------------~~~~~~E~~~  315 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------PEAFLQEAQV  315 (535)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECTTSSC-------------------------------------HHHHHHHHHH
T ss_pred             eecccCCCeEEEEEEECCCceEEEEEeCCCCCC-------------------------------------HHHHHHHHHH
Confidence            6799999999999999 4688999998774211                                     0124567776


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .+...+.+-.++.  ....+|||||++|++|.++..... ..++...+...+.  ...+..+|..|++|+|+
T Consensus       316 l~~l----~hpniv~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDl  389 (535)
T 2h8h_A          316 MKKL----RHEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL  389 (535)
T ss_dssp             HHHC----CCTTBCCEEEEEC--SSSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHhC----CCCCEeeEEEEEe--eccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCC
Confidence            6665    2333333333332  256799999999999999765322 2244444443332  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+.......     .........+++++.+..+..+...|++++...+.+++
T Consensus       390 kp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~  458 (535)
T 2h8h_A          390 RAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELT  458 (535)
T ss_dssp             SGGGEEECG--GGCEEECCTTSTTTCCCHHHHT-----TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             CHhhEEEcC--CCcEEEcccccceecCCCceec-----ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHH
Confidence            999999986  7899999999998876532110     11122345678888887777777889999987766554

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.54  E-value=8.8e-15  Score=153.84  Aligned_cols=187  Identities=16%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.       +|+.||||+.+.+....                                   ....+
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   77 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-----------------------------------EHRAL   77 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH-----------------------------------HHHHH
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcH-----------------------------------HHHHH
Confidence            6899999999999985       36899999987642211                                   11234


Q ss_pred             HHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC---------------CCHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---------------VDRKRLGRY  435 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g---------------~d~~~la~~  435 (760)
                      .+|++.+.++.    ++++ +.+-..+.......+++|||++|++|.++.......               ++...+...
T Consensus        78 ~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (316)
T 2xir_A           78 MSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICY  153 (316)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHH
T ss_pred             HHHHHHHHhcc----cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHH
Confidence            55666666652    2232 233333333334579999999999999876432211               333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          436 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       436 l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      +  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....++..++++++...+..
T Consensus       154 ~~qi~~al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~  227 (316)
T 2xir_A          154 SFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPETIFDRVY  227 (316)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSEE----ETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCcccccCccceEEECC--CCCEEECCCccccccccCcccee----ccCCCcceeecCchhhccccc
Confidence            2  223478899999999999999999986  78999999999987654321000    011223456777877776666


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      +...|++++...+.+++
T Consensus       228 ~~~~Di~slG~il~~l~  244 (316)
T 2xir_A          228 TIQSDVWSFGVLLWEIF  244 (316)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHH
Confidence            77789999987776654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=168.51  Aligned_cols=185  Identities=14%  Similarity=0.129  Sum_probs=123.8

Q ss_pred             ccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|+||+||+|.+    +|..||||+.+.+....                           .        ...+.+|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~---------------------------~--------~~~~~~E~  387 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA---------------------------D--------TEEMMREA  387 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSST---------------------------T--------HHHHHHHH
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChH---------------------------H--------HHHHHHHH
Confidence            699999999999987    36789999987742211                           0        11234566


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.+.++    .+..-+.+-.++.  ....+|||||++|++|.++.......++...+...+  +...+..+|..|++|+|
T Consensus       388 ~il~~l----~hpniv~l~~~~~--~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrD  461 (613)
T 2ozo_A          388 QIMHQL----DNPYIVRLIGVCQ--AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRN  461 (613)
T ss_dssp             HHHTTC----CCTTBCCEEEEEE--SSSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHhC----CCCCEeeEEEEec--cCCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCc
Confidence            555544    2333344434432  356799999999999998764433345555444433  23448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.|||++.  ++.++|+|||++..+.......-.   .........+++++++..+..+...|++++...+.+++
T Consensus       462 lkp~NILl~~--~~~vkL~DFGla~~~~~~~~~~~~---~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ell  533 (613)
T 2ozo_A          462 LAARNVLLVN--RHYAKISDFGLSKALGADDSYYTA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL  533 (613)
T ss_dssp             CSGGGEEEEE--TTEEEECCCSTTTTCC-----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcC--CCcEEEeeccCcccccCCCceeee---ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHH
Confidence            9999999986  789999999999887654321110   11112234677888887777778889999998777665

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.54  E-value=2.8e-15  Score=159.09  Aligned_cols=187  Identities=14%  Similarity=0.126  Sum_probs=123.7

Q ss_pred             ccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .+.||.|++|.||+|+. +|+.||||+.++.....                           ..        ..+.+|++
T Consensus        35 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~---------------------------~~--------~~~~~e~~   79 (326)
T 3uim_A           35 KNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG---------------------------GE--------LQFQTEVE   79 (326)
T ss_dssp             TTEEECCSSSEEEEECCSSSCCEEEEECCC--------------------------------CC--------CHHHHHHH
T ss_pred             ceeEecCCCcEEEEEEecCCCEEEEEEeccccCch---------------------------HH--------HHHHHHHH
Confidence            36899999999999998 69999999977632110                           00        01234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---CCCHHHHHHHH--HHHHHHHHHhC---C
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---GVDRKRLGRYA--VESYLEQILSH---G  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---g~d~~~la~~l--v~~~L~qI~~~---G  448 (760)
                      .+.++    .+..-+.+-.++ ...+..++||||++|++|.++......   .++...+...+  +...+..+|..   |
T Consensus        80 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~  154 (326)
T 3uim_A           80 MISMA----VHRNLLRLRGFC-MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK  154 (326)
T ss_dssp             GGGTC----CCTTBCCCCEEE-CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred             HHHhc----cCCCccceEEEE-ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            33332    222222222222 345667999999999999987643221   13333333222  23447889999   9


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.||+++.  ++.++|+|||++..++......     .....+++.++++++...+..++..|++++...+.+
T Consensus       155 ivH~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~  227 (326)
T 3uim_A          155 IIHRDVKAANILLDE--EFEAVVGDFGLAKLMDYKDTHV-----TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLE  227 (326)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCSSCEECCSSSSCE-----ECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHH
T ss_pred             eEeCCCchhhEEECC--CCCEEeccCccccccCcccccc-----cccccCCcCccCHHHhccCCCCccccchhHHHHHHH
Confidence            999999999999985  7899999999998775432110     011236777888888877777778899999988776


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       228 l~~  230 (326)
T 3uim_A          228 LIT  230 (326)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.54  E-value=9.5e-15  Score=165.86  Aligned_cols=183  Identities=14%  Similarity=0.083  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.+++...                                     ...+.+|+.
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~-------------------------------------~~~~~~E~~  268 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------VEEFLKEAA  268 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC-------------------------------------HHHHHHHHH
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc-------------------------------------hHHHHHHHH
Confidence            6899999999999999  4899999997763211                                     012345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+..-+.+-.++ ......+|||||++|++|.++.... ...++...+...+  +...+..+|..|++|+|
T Consensus       269 ~l~~l----~hpniv~l~~~~-~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrD  343 (495)
T 1opk_A          269 VMKEI----KHPNLVQLLGVC-TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRN  343 (495)
T ss_dssp             HHHHC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHhc----CCCCEeeEEEEE-ecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            66665    222223333322 3345679999999999999976432 2234444443332  33448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.|||++.  ++.++|+|||++..+.......     .........+++++.+..+..+...|++++...+.+++
T Consensus       344 lkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~  413 (495)
T 1opk_A          344 LAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA  413 (495)
T ss_dssp             CSGGGEEECG--GGCEEECCTTCEECCTTCCEEC-----CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             CChhhEEECC--CCcEEEeecccceeccCCceee-----cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHH
Confidence            9999999986  7899999999998875432110     00112345677888877776677789999988776655

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.54  E-value=1.7e-14  Score=150.82  Aligned_cols=187  Identities=10%  Similarity=0.035  Sum_probs=123.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||+|+........                                 .+....+.+|+
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~~~~~~e~   66 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQREKMSMEI   66 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHHHHHHHHHH
T ss_pred             EEEEeecCCEEEEEEEECCCCceEEEEEechhhccC---------------------------------HHHHHHHHHHH
Confidence            36899999999999999  48999999876532110                                 01112344555


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+    .+..-+.+-..+ ......+++|||++|.+|.++.... ..++...+...+  +-..+..+|..|++|+|
T Consensus        67 ~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~d  140 (294)
T 2rku_A           67 SIHRSL----AHQHVVGFHGFF-EDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRNRVIHRD  140 (294)
T ss_dssp             HHHHTC----CCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHhC----CCCCEeeeeeee-ccCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            555544    222222222222 3345579999999999998865432 234444433332  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.  +++++|+|||++..+......      .....++..++++++......+...|++++...+.+++.
T Consensus       141 l~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~  210 (294)
T 2rku_A          141 LKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV  210 (294)
T ss_dssp             CCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHH
T ss_pred             CChHhEEEcC--CCCEEEEeccCceecccCccc------cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHh
Confidence            9999999985  789999999999877532211      011234556677777766666677899999887766553

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.54  E-value=1.5e-14  Score=159.07  Aligned_cols=185  Identities=16%  Similarity=0.192  Sum_probs=121.2

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|.. +|+.||||+.......                                  .+....+.+|+..
T Consensus        62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~~Ei~~  107 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD----------------------------------NQTLDSYRNEIAY  107 (390)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECTTCC----------------------------------HHHHHHHHHHHHH
T ss_pred             EEEccCCCeEEEEEEcCCCCEEEEEEEeccccc----------------------------------HHHHHHHHHHHHH
Confidence            6899999999999998 6999999997653211                                  0112234567777


Q ss_pred             HHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.++...   +++  |.+++  .......+|||| +.|++|.++.... ..++.......+  +-..+..+|..|++|+|
T Consensus       108 l~~l~~~---~~~--iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrD  180 (390)
T 2zmd_A          108 LNKLQQH---SDK--IIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSD  180 (390)
T ss_dssp             HHHHTTT---CTT--BCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             HHHcccC---CCe--EEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecC
Confidence            7777431   222  23333  334456799999 5677888875432 234433332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCChHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGDTTAV  522 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----------G~~~~~~D~~al  522 (760)
                      +||.|||++   ++.++|+|||++..+.+......    .....+++.+++++++..           +..++..|++++
T Consensus       181 lkp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSl  253 (390)
T 2zmd_A          181 LKPANFLIV---DGMLKLIDFGIANQMQPDTTSVV----KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  253 (390)
T ss_dssp             CCGGGEEES---SSCEEECCCSSSCCC-------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHH
T ss_pred             CCHHHEEEE---CCeEEEEecCccccccCCCcccc----CCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHH
Confidence            999999995   58999999999998865432211    112347788888888764           234556799999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      ...+.+++.
T Consensus       254 Gvil~ell~  262 (390)
T 2zmd_A          254 GCILYYMTY  262 (390)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776653

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.54  E-value=8.3e-15  Score=151.25  Aligned_cols=184  Identities=18%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                                 .+....+.+|+.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~e~~   63 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRS---------------------------------LDVVGKIKREIQ   63 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCHHHHHHHHH
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEeccccccc---------------------------------hhHHHHHHHHHH
Confidence            6899999999999998  59999999976521000                                 001123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+-.+ .......++||||++|.+|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        64 ~l~~l----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  137 (276)
T 2h6d_A           64 NLKLF----RHPHIIKLYQV-ISTPTDFFMVMEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRHMVVHRDL  137 (276)
T ss_dssp             HHHTC----CCTTBCCEEEE-EECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred             HHhcC----CCCCEeEEEEE-EecCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCC
Confidence            55544    22222222222 23346679999999999999876432 223443333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.  ++.++|+|||++..++.....       ....++..+++++....... ++..|++++...+.+++
T Consensus       138 ~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~  205 (276)
T 2h6d_A          138 KPENVLLDA--HMNAKIADFGLSNMMSDGEFL-------RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALL  205 (276)
T ss_dssp             CGGGEEECT--TSCEEECCCCGGGCCCC--------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEECC--CCCEEEeecccccccCCCcce-------ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHH
Confidence            999999985  789999999999887654321       11124555666665543322 34578888887766554

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.54  E-value=2.2e-14  Score=156.13  Aligned_cols=182  Identities=16%  Similarity=0.196  Sum_probs=113.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|+.
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~   76 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THAKRAYRELV   76 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCCh----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  59999999876532111                                  11122345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC-----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s-----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+..+    .+..-+.+..++....     ...++||||++| .+.+...   ..++...+...+  +-..+..+|..|+
T Consensus        77 ~l~~l----~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~i  148 (371)
T 2xrw_A           77 LMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGI  148 (371)
T ss_dssp             HHHHC----CCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhc----CCCCccceEEeeccccccccccceEEEEEcCCC-CHHHHHh---hccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            55544    2333334444443222     256999999997 4554432   224444333322  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  ++.++|+|||++...+.....       .-..++..++++++..-+..++..|+++++-.+.++
T Consensus       149 vH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  219 (371)
T 2xrw_A          149 IHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  219 (371)
T ss_dssp             CCSCCCGGGEEECT--TSCEEECCCCC-----------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred             ecccCCHHHEEEcC--CCCEEEEEeeccccccccccc-------CCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHH
Confidence            99999999999985  889999999999877543211       112345567778877666667788999999887766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       220 ~~  221 (371)
T 2xrw_A          220 IK  221 (371)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=158.54  Aligned_cols=188  Identities=15%  Similarity=0.087  Sum_probs=121.1

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|++       +|+.||||+.+......                                   ....+
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~  121 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ-----------------------------------DELDF  121 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHH-----------------------------------HHHHH
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChh-----------------------------------hHHHH
Confidence            5799999999999995       36789999876532211                                   11123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh------cCCCHHHHHHHH--HHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~------~g~d~~~la~~l--v~~~L~q  443 (760)
                      .+|+..+.++    .+..-+.+-.++ ......++||||++|++|.++.....      ..+....+...+  +-..+..
T Consensus       122 ~~E~~~l~~l----~hpnIv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  196 (367)
T 3l9p_A          122 LMEALIISKF----NHQNIVRCIGVS-LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY  196 (367)
T ss_dssp             HHHHHHHHHC----CCTTBCCEEEEE-CSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCCeEEEEE-ecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHH
Confidence            4566555554    222223333322 33456799999999999998765332      123333333322  2334788


Q ss_pred             HHhCCccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      +|..|++|+|+||.|||++.. .+..++|+|||++..+.......    ......+++.++++++..-+..++..|++++
T Consensus       197 LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Dvwsl  272 (367)
T 3l9p_A          197 LEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR----KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSF  272 (367)
T ss_dssp             HHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCT----TCCGGGSCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccc----cCCCcCCcccEECHHHhcCCCCCcHHHHHHH
Confidence            999999999999999999841 13359999999987553221000    0011234566788888777777778899999


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      .-.+.+++
T Consensus       273 G~il~ell  280 (367)
T 3l9p_A          273 GVLLWEIF  280 (367)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98776665

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.54  E-value=3e-14  Score=147.31  Aligned_cols=187  Identities=16%  Similarity=0.134  Sum_probs=123.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +....+.+|+.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~e~~   57 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEKQMLVSEVN   57 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCH----------------------------------HHHHHHHHHHH
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  59999999987632110                                  11223456666


Q ss_pred             HHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhh---cCCCHHHHHHHH--HHHHHHHHHhCC--
Q 004334          377 NAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQILSHG--  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~L~qI~~~G--  448 (760)
                      .+.++    .+..-+.+-..+. +.....++||||++|++|.++.....   ..++...+...+  +...+..+|..|  
T Consensus        58 ~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~  133 (279)
T 2w5a_A           58 LLREL----KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG  133 (279)
T ss_dssp             HHHHC----CCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHhc----CCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCC
Confidence            66655    2222222222222 22456799999999999998764322   124444443333  223478899999  


Q ss_pred             ---ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          449 ---FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       449 ---ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                         ++|+|++|.||+++.  ++.++|+|||++..+.......      ....++..+++++....+..++..|++++...
T Consensus       134 ~~~ivH~dl~p~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  205 (279)
T 2w5a_A          134 GHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSFA------KTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL  205 (279)
T ss_dssp             ----CCCCCSGGGEEECS--SSCEEECCCCHHHHC---CHHH------HHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHH
T ss_pred             CCeeEEeccchhhEEEcC--CCCEEEecCchheeeccccccc------cccCCCccccChHHhccCCCCchhhHHHHHHH
Confidence               999999999999985  7899999999998876543211      11235667778888776666667899999887


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       206 l~~l~~  211 (279)
T 2w5a_A          206 LYELCA  211 (279)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.53  E-value=8.7e-15  Score=155.72  Aligned_cols=199  Identities=17%  Similarity=0.147  Sum_probs=128.7

Q ss_pred             Chhhhhc--ccC-ccccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCcccc
Q 004334          288 PLDDVFE--RFD-VEPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (760)
Q Consensus       288 ~~~~iF~--~fd-~~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~  358 (760)
                      .+.++|.  .|. .+.||.|++|.||+|++      +|+.||||+.+..-..                            
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~----------------------------   66 (327)
T 3lxl_A           15 QDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPD----------------------------   66 (327)
T ss_dssp             --CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHH----------------------------
T ss_pred             ChhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHH----------------------------
Confidence            3445554  232 36899999999999994      4899999998763211                            


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH-
Q 004334          359 DWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  436 (760)
Q Consensus       359 ~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l-  436 (760)
                              ..+.+.+|++.+.++    .+..-+.+-.++. +.....++||||++|++|.++.......++...+...+ 
T Consensus        67 --------~~~~~~~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~  134 (327)
T 3lxl_A           67 --------QQRDFQREIQILKAL----HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSS  134 (327)
T ss_dssp             --------HHHHHHHHHHHHHTC----CCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhc----CCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHH
Confidence                    112344566666554    2222222222222 22344689999999999999765433345555444433 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004334          437 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  515 (760)
Q Consensus       437 -v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~  515 (760)
                       +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++........   .....++..++++++..-+..++
T Consensus       135 qi~~al~~lH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~  209 (327)
T 3lxl_A          135 QICKGMEYLGSRRCVHRDLAARNILVES--EAHVKIADFGLAKLLPLDKDYYVV---REPGQSPIFWYAPESLSDNIFSR  209 (327)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCGGGCEECCTTCSEEEC---SSCCCSCGGGSCHHHHHHCEEEH
T ss_pred             HHHHHHHHHHhCCccCCCCChhhEEECC--CCCEEEcccccceecccCCcccee---eccCCccccccCHHHhccCCCCh
Confidence             233478899999999999999999986  889999999999877543211000   00112344466777766665667


Q ss_pred             CCChHHHHHHHHHHHH
Q 004334          516 TGDTTAVRRTAQFFLN  531 (760)
Q Consensus       516 ~~D~~al~~~~~~~l~  531 (760)
                      ..|++++...+.+++.
T Consensus       210 ~~Di~slG~il~~ll~  225 (327)
T 3lxl_A          210 QSDVWSFGVVLYELFT  225 (327)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHh
Confidence            7899999988777664

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.53  E-value=8.3e-15  Score=160.01  Aligned_cols=192  Identities=17%  Similarity=0.131  Sum_probs=125.6

Q ss_pred             cccccc--cccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasa--SiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|  ++|.||+|+.  +|+.||||+.+.....                                  .+....+.+|
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------------------------~~~~~~~~~E   76 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS----------------------------------NEMVTFLQGE   76 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------HHHHHHHHHH
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC----------------------------------hHHHHHHHHH
Confidence            689999  9999999999  5999999998653211                                  1122334567


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      +..+.++    .+..-+.+-.++ ......++||||++|++|.++.... ..+++...+...+  +-..+..+|..|++|
T Consensus        77 ~~~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH  151 (389)
T 3gni_B           77 LHVSKLF----NHPNIVPYRATF-IADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVH  151 (389)
T ss_dssp             HHHHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHhC----CCCCCCcEeEEE-EECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            6666655    222223333333 3455679999999999999976432 1334544443332  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCChHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~-~l~~l~~al~~~D~~~v~~~l~~l--G~~~~~~D~~al~~~~~~  528 (760)
                      +|+||.|||++.  ++.++|+|||.+..+...... ....-......++..+++++++..  ...++..|++++.-.+.+
T Consensus       152 rDlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~e  229 (389)
T 3gni_B          152 RSVKASHILISV--DGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACE  229 (389)
T ss_dssp             CCCSGGGEEECT--TCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcC--CCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHH
Confidence            999999999985  889999999987654322100 000000001134556778887765  345667899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       230 l~~  232 (389)
T 3gni_B          230 LAN  232 (389)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.53  E-value=2.9e-14  Score=150.34  Aligned_cols=188  Identities=14%  Similarity=0.128  Sum_probs=114.8

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|++     +++.||||+.++.....                                  +....+.+
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~   85 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQ----------------------------------REIEEFLS   85 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCH----------------------------------HHHHHHHH
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEeccccch----------------------------------hHHHHHHH
Confidence            5799999999999987     24689999876532111                                  01122445


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCC----CeEEEEeecCCCchhhhhhhh-----hcCCCHHHHHHHH--HHHHHH
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLD-----ELGVDRKRLGRYA--VESYLE  442 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st----~~vLVME~ieG~~L~d~~~l~-----~~g~d~~~la~~l--v~~~L~  442 (760)
                      |+..+.++    .+..-+.+..++.+...    ..+++|||++|++|.++....     ...++...+...+  +-..+.
T Consensus        86 e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~  161 (313)
T 3brb_A           86 EAACMKDF----SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME  161 (313)
T ss_dssp             HHHHHHTC----CCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC----CCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHH
Confidence            66655554    23333334443332221    349999999999999876322     1224444443333  223478


Q ss_pred             HHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          443 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       443 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .......+.+++++....+..++..|++++
T Consensus       162 ~LH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  235 (313)
T 3brb_A          162 YLSNRNFLHRDLAARNCMLRD--DMTVCVADFGLSKKIYSGDYYRQ----GRIAKMPVKWIAIESLADRVYTSKSDVWAF  235 (313)
T ss_dssp             HHHTTTCCCCCCSGGGEEECT--TSCEEECSCSCC--------------------CCGGGSCHHHHHSSCCCHHHHHHHH
T ss_pred             HHHhCCcccCCCCcceEEEcC--CCcEEEeecCcceecccccccCc----ccccCCCccccCchhhcCCCccchhhhHHH
Confidence            899999999999999999985  78999999999987755432111    112234566778888777766777899999


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      ...+.+++
T Consensus       236 G~il~el~  243 (313)
T 3brb_A          236 GVTMWEIA  243 (313)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.53  E-value=1.5e-14  Score=163.09  Aligned_cols=182  Identities=18%  Similarity=0.184  Sum_probs=117.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+........                                  .....+.+|..
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~----------------------------------~~~~~~~~E~~  113 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------THAKRAYRELV  113 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSH----------------------------------HHHHHHHHHHH
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccCh----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999876532111                                  11122345655


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+..+    .+..-+.+-.++...     ....+|||||++|..+..+ .   ..++...+...+  +-..++.+|..|+
T Consensus       114 ~l~~l----~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~-~---~~l~~~~~~~~~~qil~aL~~lH~~~i  185 (464)
T 3ttj_A          114 LMKCV----NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI-Q---MELDHERMSYLLYQMLCGIKHLHSAGI  185 (464)
T ss_dssp             HHHHC----CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHH-T---SCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhC----CCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHH-h---hcCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            55554    233334444444321     1345999999998633322 1   123433332222  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+|||++.  ++.++|+|||++........       ..-..++..+++++++.-...++..|+++++-.+.++
T Consensus       186 iHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  256 (464)
T 3ttj_A          186 IHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFM-------MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  256 (464)
T ss_dssp             CCCCCCGGGEEECT--TSCEEECCCCCC-----CCC-------C----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred             ccCCCChHhEEEeC--CCCEEEEEEEeeeecCCCcc-------cCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999986  88999999999987654321       0112356677888887666667788999999888777


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       257 l~  258 (464)
T 3ttj_A          257 VR  258 (464)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.53  E-value=9.2e-15  Score=155.80  Aligned_cols=184  Identities=14%  Similarity=0.174  Sum_probs=118.5

Q ss_pred             cccccccccEEEEEEE--CCee----EEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~----VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|++  +|+.    ||+|+........                           ....        +.
T Consensus        19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~---------------------------~~~~--------~~   63 (325)
T 3kex_A           19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQ---------------------------SFQA--------VT   63 (325)
T ss_dssp             EEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCS---------------------------CBCS--------CC
T ss_pred             eeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHH---------------------------HHHH--------HH
Confidence            6899999999999998  4654    7788764421110                           0000        12


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~Gf  449 (760)
                      +|+..+.++    .+ ++  |++++.-+ ....++||||++|++|.+........++...+...  .+-..+..+|..|+
T Consensus        64 ~e~~~l~~l----~h-~~--iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  136 (325)
T 3kex_A           64 DHMLAIGSL----DH-AH--IVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGM  136 (325)
T ss_dssp             HHHHHHHTC----CC-TT--BCCEEEEECBSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcC----CC-CC--cCeEEEEEcCCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            233333322    22 22  23333222 45678999999999998876433223333333222  23345888999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  +++++|+|||++..++........    ....+...+++++....+..++..|++++...+.++
T Consensus       137 vH~Dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  210 (325)
T 3kex_A          137 VHRNLAARNVLLKS--PSQVQVADFGVADLLPPDDKQLLY----SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWEL  210 (325)
T ss_dssp             CCSCCSSTTEEESS--SSCEEECSCSGGGGSCCCTTCCC---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCccchheEEECC--CCeEEECCCCcccccCcccccccc----cCCCCcccccChHHhccCCCChhhHhHHhHHHHHHH
Confidence            99999999999975  789999999999987654322111    112345567888888777777788999999877665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       211 ~  211 (325)
T 3kex_A          211 M  211 (325)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.53  E-value=1.3e-14  Score=167.90  Aligned_cols=180  Identities=17%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             ccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       300 PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -..+++.|+++.++.  .|+.|+||+...........+                          .-...-.+.+.+|+..
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~E~~~  294 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTA--------------------------EESQRNKYELHNEIKF  294 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCH--------------------------HHHHHHHHHHHHHHHH
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchh--------------------------hhhHHHHHHHHHHHHH
Confidence            466777788777776  699999999865432110000                          0001112345677777


Q ss_pred             HHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpH  455 (760)
                      ++++.    +  +..||+++.  +.....+||||||+|++|.++... ....+..+++..++. .|..+|.+|++|||+|
T Consensus       295 l~~~~----~--~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~-~~~l~~~~I~~QIl~-AL~ylH~~GIIHRDIK  366 (569)
T 4azs_A          295 LTQPP----A--GFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAA-GEEIDREKILGSLLR-SLAALEKQGFWHDDVR  366 (569)
T ss_dssp             HHSCC----T--TCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHT-TCCCCHHHHHHHHHH-HHHHHHHTTCEESCCC
T ss_pred             HHhcC----C--CCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHh-CCCCCHHHHHHHHHH-HHHHHHHCCceeccCc
Confidence            76552    2  235677665  345667999999999999997643 234566677666554 5899999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      |+|||+++  +|+++|+|||+++.+.......      ....+++.+++++++. |......|.+++
T Consensus       367 PeNILL~~--dg~vKL~DFGlAr~~~~~~~~~------~t~vGTp~YmAPE~l~-g~~~~~~d~~s~  424 (569)
T 4azs_A          367 PWNVMVDA--RQHARLIDFGSIVTTPQDCSWP------TNLVQSFFVFVNELFA-ENKSWNGFWRSA  424 (569)
T ss_dssp             GGGEEECT--TSCEEECCCTTEESCC---CCS------HHHHHHHHHHHHHHC--------------
T ss_pred             hHhEEECC--CCCEEEeecccCeeCCCCCccc------cCceechhhccHHHhC-CCCCCccccccc
Confidence            99999986  8999999999999886542211      1123577888888865 333344455443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.53  E-value=1.2e-14  Score=152.59  Aligned_cols=184  Identities=14%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.       +|+.||||+.+++....                                   ....+
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   73 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPS-----------------------------------ELRDL   73 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHH-----------------------------------HHHHH
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHH-----------------------------------HHHHH
Confidence            6899999999999986       24899999987642211                                   11223


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhc-----------------------C
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDEL-----------------------G  426 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~-----------------------g  426 (760)
                      .+|++.+.++    . +++  +++++  .......++||||++|++|.++......                       .
T Consensus        74 ~~E~~~l~~l----~-hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (314)
T 2ivs_A           74 LSEFNVLKQV----N-HPH--VIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERA  146 (314)
T ss_dssp             HHHHHHHTTC----C-CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CE
T ss_pred             HHHHHHHhhC----C-CCc--eeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccC
Confidence            4555555544    2 233  23333  2345567999999999999987643211                       1


Q ss_pred             CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004334          427 VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  504 (760)
Q Consensus       427 ~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~  504 (760)
                      ++...+...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-    .....+++.+++
T Consensus       147 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~a  220 (314)
T 2ivs_A          147 LTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAE--GRKMKISDFGLSRDVYEEDSYVK----RSQGRIPVKWMA  220 (314)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEET--TTEEEECCCTTCEECTTTSCEEC----SSCCCSCGGGCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcC--CCCEEEcccccccccccccccee----ccCCCCcccccC
Confidence            2333333322  223478899999999999999999986  78999999999987754321000    001123455677


Q ss_pred             HHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          505 QAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       505 ~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++....+..++..|++++.-.+.+++
T Consensus       221 PE~~~~~~~~~~~Di~slG~il~el~  246 (314)
T 2ivs_A          221 IESLFDHIYTTQSDVWSFGVLLWEIV  246 (314)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCCcCchhhHHHHHHHHHHHH
Confidence            77766666667789999987776654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.53  E-value=2.1e-14  Score=151.82  Aligned_cols=185  Identities=15%  Similarity=0.078  Sum_probs=121.3

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+..       ++.||||+.+......                                   ....+
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~   75 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR-----------------------------------ERIEF   75 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH-----------------------------------HHHHH
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHH-----------------------------------HHHHH
Confidence            68999999999999863       6889999876532110                                   01123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh---------cCCCHHHHHHHH--HH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA--VE  438 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~---------~g~d~~~la~~l--v~  438 (760)
                      .+|+..+.++    .+ ++  +++++.  ......++||||++|++|.++.....         ...+...+...+  +-
T Consensus        76 ~~E~~~l~~l----~h-~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~  148 (322)
T 1p4o_A           76 LNEASVMKEF----NC-HH--VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIA  148 (322)
T ss_dssp             HHHHHHGGGC----CC-TT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----CC-CC--EeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHH
Confidence            4455544443    22 22  333332  33456799999999999998764321         122333333322  23


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          439 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       439 ~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.++++++...+..++..|
T Consensus       149 ~~l~~lH~~~i~H~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  222 (322)
T 1p4o_A          149 DGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFTTYSD  222 (322)
T ss_dssp             HHHHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHCCCccCCCccceEEEcC--CCeEEECcCcccccccccccccc----ccCCCCCCCccChhhhccCCCCchhh
Confidence            3478899999999999999999985  78999999999987654321100    01112345577777777666677789


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++...+.+++.
T Consensus       223 i~slG~il~el~~  235 (322)
T 1p4o_A          223 VWSFGVVLWEIAT  235 (322)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999887766653

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.53  E-value=8.8e-15  Score=151.99  Aligned_cols=188  Identities=18%  Similarity=0.187  Sum_probs=114.2

Q ss_pred             cccccccccEEEEEEE---CC--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|+||+|++   +|  ..||||+.++.....                                 .+....+.+
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~~~~~   70 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PEAMDDFIR   70 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CHHHHHHHH
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC---------------------------------HHHHHHHHH
Confidence            6899999999999986   23  379999877632110                                 011223456


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffH  451 (760)
                      |++.+.++    .+..-+.+..++  .....+++|||++|++|.+........++...+...+.  -..+..+|..|++|
T Consensus        71 e~~~l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H  144 (291)
T 1u46_A           71 EVNAMHSL----DHRNLIRLYGVV--LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH  144 (291)
T ss_dssp             HHHHHHHC----CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHhC----CCCCcccEEEEE--ccCCceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            66666655    222223333332  23457999999999999987654333345444433332  23478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++|+|||++..+.........   .....++..+++++.......++..|++++...+.+++
T Consensus       145 ~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  218 (291)
T 1u46_A          145 RDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMF  218 (291)
T ss_dssp             SCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred             CCCchheEEEcC--CCCEEEccccccccccccccchhh---hccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHH
Confidence            999999999986  789999999999887553211000   01112344566777766555566789999887776654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.53  E-value=3.5e-14  Score=148.26  Aligned_cols=186  Identities=16%  Similarity=0.157  Sum_probs=118.4

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+........                           .        ...+.+|+
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------~--------~~~~~~E~   71 (285)
T 3is5_A           27 KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQV---------------------------P--------MEQIEAEI   71 (285)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------C--------HHHHHHHH
T ss_pred             cceeccCCCeEEEEEEEccCCceEEEEEeeccccch---------------------------h--------HHHHHHHH
Confidence            36899999999999998  58999999876532110                           0        11234555


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +.+.++    .+..-+.+-.++ ......++||||++|++|.+.....   ...++...+...+  +-..+..+|..|++
T Consensus        72 ~~l~~l----~hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~iv  146 (285)
T 3is5_A           72 EVLKSL----DHPNIIKIFEVF-EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVV  146 (285)
T ss_dssp             HHHHTC----CCTTBCCEEEEE-ECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhC----CCchHHhHHHhe-ecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            555544    222222222222 3345679999999999998865321   1234444433332  22347889999999


Q ss_pred             ccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      |+|+||.||++++. .++.++|+|||++..+......       ....++..++++++.. +..+...|++++...+.++
T Consensus       147 H~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~l  218 (285)
T 3is5_A          147 HKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS-------TNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFL  218 (285)
T ss_dssp             CCCCSGGGEEESSSSTTCCEEECCCCCCCC-----------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccC-------cCcccccCcCChHHhc-cCCCcccCeehHHHHHHHH
Confidence            99999999999641 2578999999999877553221       1123566677777765 3445667899988877666


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       219 l~  220 (285)
T 3is5_A          219 LT  220 (285)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.53  E-value=2.1e-14  Score=168.25  Aligned_cols=186  Identities=14%  Similarity=0.079  Sum_probs=123.9

Q ss_pred             cccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|.||+|.+    .|+.||||+.+.+....                                  +....+.+|
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~----------------------------------~~~~~~~~E  420 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------ALKDELLAE  420 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCG----------------------------------GGHHHHHHH
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCH----------------------------------HHHHHHHHH
Confidence            4799999999999976    36899999987642211                                  011234566


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ++.+.++.    +..-|.+-.++.  ....+|||||++|++|.++.... ..++...+...+  +...+..+|..|++|+
T Consensus       421 ~~il~~l~----hpnIv~l~~~~~--~~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~iiHr  493 (635)
T 4fl3_A          421 ANVMQQLD----NPYIVRMIGICE--AESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESNFVHR  493 (635)
T ss_dssp             HHHHHHCC----CTTBCCEEEEEE--SSSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHhCC----CCCEeeEEEEEe--cCCEEEEEEccCCCCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeCC
Confidence            66666652    323333333332  34578999999999999876422 234444433332  2334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||.|||++.  ++.++|+|||++..+.........   .........+++++++..+..+...|++++...+.+++
T Consensus       494 DLkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~---~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ell  566 (635)
T 4fl3_A          494 DLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAF  566 (635)
T ss_dssp             CCSGGGEEEEE--TTEEEECCTTHHHHTTC----------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCChHhEEEeC--CCCEEEEEcCCccccccCcccccc---ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999986  789999999999887654321110   11112345678888887777777889999998776655

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=6.5e-15  Score=158.51  Aligned_cols=192  Identities=17%  Similarity=0.175  Sum_probs=118.4

Q ss_pred             cccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ..|. .+.||.|++|.||+|+.  +|+.||||+.+.......                               .+.....
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~-------------------------------~~~~~~~   58 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEA-------------------------------KDGINRT   58 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------CTH
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchh-------------------------------hhhhhHH
Confidence            3443 36899999999999999  599999999765321110                               0011123


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHH---HHHHHHHHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~---~la~~lv~~~L~qI~~~  447 (760)
                      +.+|+..+.++    .+..-+.+-.++ ......++||||++| ++.+........++..   .++..++ ..+..+|..
T Consensus        59 ~~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~-~~l~~lH~~  131 (346)
T 1ua2_A           59 ALREIKLLQEL----SHPNIIGLLDAF-GHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTL-QGLEYLHQH  131 (346)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEE-CCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHH-HHHHHHHHT
T ss_pred             HHHHHHHHhhC----CCCCCCeEEEEE-eeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHH-HHHHHHHHC
Confidence            44566666554    222222222222 345678999999998 6766543322223322   2333333 458889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  526 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~  526 (760)
                      |++|+|+||+||+++.  ++.++|+|||++..+......      .....+++.++++++... ...+...|++++...+
T Consensus       132 ~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il  203 (346)
T 1ua2_A          132 WILHRDLKPNNLLLDE--NGVLKLADFGLAKSFGSPNRA------YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCIL  203 (346)
T ss_dssp             TCCCCCCCGGGEEECT--TCCEEECCCGGGSTTTSCCCC------CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred             CEECCCCCHHHEEEcC--CCCEEEEecccceeccCCccc------CCcccccccccCchHhhCCCCCCchhhhHhHHHHH
Confidence            9999999999999985  889999999999877543211      001134556777777643 2345567999999877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       204 ~ell~  208 (346)
T 1ua2_A          204 AELLL  208 (346)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.52  E-value=8.1e-15  Score=158.58  Aligned_cols=181  Identities=15%  Similarity=0.124  Sum_probs=115.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+........                                        .+|..
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----------------------------------------~~E~~   67 (342)
T 2qr7_A           28 EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDP----------------------------------------TEEIE   67 (342)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCC----------------------------------------HHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCCh----------------------------------------HHHHH
Confidence            6899999999999999  59999999986532110                                        12333


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++.    ++++ +.+-.++ +.....++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|
T Consensus        68 ~l~~~~----~hp~iv~~~~~~-~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~givHrD  141 (342)
T 2qr7_A           68 ILLRYG----QHPNIITLKDVY-DDGKYVYVVTELMKGGELLDKILRQ-KFFSEREASAVLFTITKTVEYLHAQGVVHRD  141 (342)
T ss_dssp             HHHHHT----TSTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHHhc----CCCCcCeEEEEE-EcCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCcEecc
Confidence            333321    2333 2333333 3445679999999999998865322 224444333332  22347889999999999


Q ss_pred             CCCCcEEEeccCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~--g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||++.+..+  +.++|+|||++..+......      .....+++.++++++..-...++..|++++...+.+++.
T Consensus       142 lkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  215 (342)
T 2qr7_A          142 LKPSNILYVDESGNPESIRICDFGFAKQLRAENGL------LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLT  215 (342)
T ss_dssp             CCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC------BCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc------eeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhc
Confidence            9999999964211  35999999999877543210      001124555666666554334456788998887776654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.52  E-value=1.1e-14  Score=154.63  Aligned_cols=187  Identities=16%  Similarity=0.093  Sum_probs=124.5

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|+.      +|+.||||+.+......                                   ....+.
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~   81 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQ-----------------------------------HRSGWK   81 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHH-----------------------------------HHHHHH
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChH-----------------------------------HHHHHH
Confidence            6899999999998865      48999999987642111                                   112345


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +|++.+.++.    +..-+.+-.++... ....++||||++|++|.++...  .+++...+...+  +-..+..+|..|+
T Consensus        82 ~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~i~~~l~~~l~~LH~~~i  155 (318)
T 3lxp_A           82 QEIDILRTLY----HEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPR--HSIGLAQLLLFAQQICEGMAYLHAQHY  155 (318)
T ss_dssp             HHHHHHHHCC----CTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGG--SCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhCC----CcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            5666666552    32233333333332 2446899999999999987643  234544443333  2334788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++.  ++.++|+|||++..++........   .....++..+++++.......++..|++++...+.++
T Consensus       156 vH~Dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  230 (318)
T 3lxp_A          156 IHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYYRV---REDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL  230 (318)
T ss_dssp             ECSCCSGGGEEECT--TCCEEECCGGGCEECCTTCSEEEC------CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             cCCCCchheEEEcC--CCCEEECCcccccccccccccccc---ccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999985  789999999999887653211000   0111234456677776665556677999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       231 l~  232 (318)
T 3lxp_A          231 LT  232 (318)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.52  E-value=2.2e-14  Score=148.92  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....-                                  ....+.++..
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~----------------------------------~~~~~~~~~~   58 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQE----------------------------------QKRLLMDLDI   58 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHH----------------------------------HHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHH----------------------------------HHHHHHHHHH
Confidence            6899999999999999  699999999876422110                                  0001111111


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhC-Ccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSH-GFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~-Gff  450 (760)
                      .    .+...+..-+.+-.++ ......++||||++| ++.++...   ....++...+...+  +-..+..+|.. |++
T Consensus        59 ~----~~~~~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~  132 (290)
T 3fme_A           59 S----MRTVDCPFTVTFYGAL-FREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI  132 (290)
T ss_dssp             H----HTTCCCTTBCCEEEEE-ECSSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             H----HHhCCCCeEEEEeeee-eccCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCee
Confidence            1    1122222222222222 345678999999997 66654321   12234444433332  22347889998 999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCChHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDTTAVRRTA  526 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~----lG~~~~~~D~~al~~~~  526 (760)
                      |+|+||.||+++.  ++.++|+|||++..+.......       ...+++.++++++..    .+..++..|++++...+
T Consensus       133 H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il  203 (290)
T 3fme_A          133 HRDVKPSNVLINA--LGQVKMCDFGISGYLVDDVAKD-------IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITM  203 (290)
T ss_dssp             CCCCSGGGCEECT--TCCEEBCCC----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEECC--CCCEEEeecCCccccccccccc-------ccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHH
Confidence            9999999999985  7899999999998876543321       123566677888763    23344567889988777


Q ss_pred             HHHH
Q 004334          527 QFFL  530 (760)
Q Consensus       527 ~~~l  530 (760)
                      .+++
T Consensus       204 ~~l~  207 (290)
T 3fme_A          204 IELA  207 (290)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.52  E-value=4.3e-14  Score=151.09  Aligned_cols=94  Identities=13%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH-hCCccccCCCCCcEEEeccCCC----------
Q 004334          401 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL-SHGFFHADPHPGNIAVDDVNGG----------  467 (760)
Q Consensus       401 st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~-~~GffHaDpHPGNILV~~~~~g----------  467 (760)
                      ....+|||||++|+++.+...  ...++...+...+  +-..+..+| ..|++|+|+||+|||++.  ++          
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~--~~~~~~~~~~~~  209 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMR--TKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKK--TSLKKLHYTLNG  209 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGT--TTCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEE--CSCSEEEEEETT
T ss_pred             cCeEEEEEEecCCCccHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEec--cCCcceeeeccC
Confidence            456799999999986544321  1223433333332  223478899 999999999999999986  44          


Q ss_pred             ----------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004334          468 ----------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       468 ----------~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~  509 (760)
                                .++|+|||++..+....           ..+.+.++++++..
T Consensus       210 ~~~~~~~~~~~vkL~DFG~a~~~~~~~-----------~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          210 KSSTIPSCGLQVSIIDYTLSRLERDGI-----------VVFCDVSMDEDLFT  250 (336)
T ss_dssp             EEEEEECTTEEEEECCCTTCBEEETTE-----------EECCCCTTCSGGGC
T ss_pred             ccccccCCCceEEEeeccccEecCCCc-----------EEEeecccChhhhc
Confidence                      89999999998876431           23455566666553

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.52  E-value=2.3e-14  Score=156.45  Aligned_cols=181  Identities=19%  Similarity=0.190  Sum_probs=106.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|++|.||+|+.  +|+.||||+........                                  .....+.+|++
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~~   80 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI----------------------------------IHAKRTYRELR   80 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999876532111                                  11122345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+..+    .+..-+.+-.++..     .....+++|||+ |.+|.++...  ..++...+...+  +-..+..+|..|+
T Consensus        81 ~l~~l----~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~gi  153 (367)
T 2fst_X           81 LLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSADI  153 (367)
T ss_dssp             HHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhC----CCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            66554    23333334444322     124569999999 6788876543  234443333322  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~  528 (760)
                      +|+|+||+||+++.  ++.++|+|||++........         -..++..++++++... ...+...|+++++-.+.+
T Consensus       154 vH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  222 (367)
T 2fst_X          154 IHRDLKPSNLAVNE--DCELKILDFGLARHTADEMT---------GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAE  222 (367)
T ss_dssp             CCCCCCGGGEEECT--TCCEEECC------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHH
T ss_pred             eeCCCCHhhEEECC--CCCEEEeeccccccccccCC---------CcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHH
Confidence            99999999999985  88999999999987654321         1234556677777654 455677899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       223 ll~  225 (367)
T 2fst_X          223 LLT  225 (367)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.52  E-value=2.1e-15  Score=163.14  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|+||+|+.  +|+.||||+........                                 .+....+.+|+
T Consensus        14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~~~~~E~   60 (336)
T 3h4j_B           14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK---------------------------------SDMHMRVEREI   60 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCSHHHHHHH
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccc---------------------------------hhHHHHHHHHH
Confidence            36899999999999998  69999999875421000                                 00011234555


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+..+    .+..-+.+-.++ ...+..++||||++ +++.+.... ...++...+...+  +-..+..+|..|++|+|
T Consensus        61 ~~l~~l----~hpnIv~l~~~~-~~~~~~~lv~E~~~-g~l~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givH~D  133 (336)
T 3h4j_B           61 SYLKLL----RHPHIIKLYDVI-TTPTDIVMVIEYAG-GELFDYIVE-KKRMTEDEGRRFFQQIICAIEYCHRHKIVHRD  133 (336)
T ss_dssp             HHHTTC----CCTTBCCEEEEE-ECSSEEEEEECCCC-EEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHhC----CCCCCCeEEEEE-EeCCEEEEEEECCC-CcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecC
Confidence            555444    222222222222 34456799999994 566654322 2234443333322  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      +||+||+++.  ++.++|+|||++..+.+....       ....+++.++++++..-... ++..|+++++..+.+++.
T Consensus       134 lkp~NIll~~--~~~~kl~DFG~s~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~  203 (336)
T 3h4j_B          134 LKPENLLLDD--NLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLV  203 (336)
T ss_dssp             CSTTTEEECT--TCCEEECCSSCTBTTTTSBTT-------CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhEEEcC--CCCEEEEEeccceeccCCccc-------ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHh
Confidence            9999999985  789999999999877654211       11235666777776543322 456799999887776654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.52  E-value=1.6e-14  Score=154.18  Aligned_cols=185  Identities=13%  Similarity=0.114  Sum_probs=119.1

Q ss_pred             cccccccccEEEEEEE--CCee----EEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~----VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|++  +|+.    ||+|..+.....                                   +....+.
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~   65 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP-----------------------------------KANKEIL   65 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC------------------------------------------CHHHHH
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCH-----------------------------------HHHHHHH
Confidence            6899999999999998  4554    577765542110                                   1112345


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|+..+.++.    +..-+.+-.++  .....+++|||++|++|.++.......++...+...+  +-..+..+|..|++
T Consensus        66 ~E~~~l~~l~----h~~iv~~~~~~--~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~iv  139 (327)
T 3poz_A           66 DEAYVMASVD----NPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLV  139 (327)
T ss_dssp             HHHHHHHHCC----BTTBCCEEEEE--ESSSEEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCC----CCCEeEEEEEE--ecCCeEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCee
Confidence            6666666652    22222332322  2345789999999999998765444445544443332  23448889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  ++.++|+|||++..++........    ....+...+++++...-+..++..|++++...+.+++
T Consensus       140 H~Dikp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell  213 (327)
T 3poz_A          140 HRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM  213 (327)
T ss_dssp             CSCCCGGGEEEEE--TTEEEECCTTHHHHHTTTCC-----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCChheEEECC--CCCEEEccCcceeEccCCcccccc----cCCCccccccChHHhccCCCCchhhhhhhHHHHHHHH
Confidence            9999999999986  889999999999877554322111    1123355677888777777777889999998776654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.52  E-value=2e-14  Score=149.85  Aligned_cols=190  Identities=12%  Similarity=0.045  Sum_probs=123.2

Q ss_pred             cccccccccEEEEEEE--C---CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~---G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|+.  +   +..||||+........                                   ..+.+.+
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~~~~~~~   71 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQ-----------------------------------QVEAFLR   71 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHH-----------------------------------HHHHHHH
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHH-----------------------------------HHHHHHH
Confidence            6799999999999997  2   3479999876421111                                   1122345


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+-.++.......+++|||++|++|.++........+...+...+  +-..+..+|..|++|
T Consensus        72 E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H  147 (298)
T 3pls_A           72 EGLLMRGL----NHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVH  147 (298)
T ss_dssp             HHHHHHTC----CCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            55555544    233333333333333334489999999999998765434445544444332  234488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||+||+++.  ++.++|+|||++..+.+........  .....+.+.+++++.......++..|++++...+.+++.
T Consensus       148 ~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  223 (298)
T 3pls_A          148 RDLAARNCMLDE--SFTVKVADFGLARDILDREYYSVQQ--HRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT  223 (298)
T ss_dssp             SCCSGGGEEECT--TCCEEECCTTSSCTTTTGGGGCSCC--SSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEcC--CCcEEeCcCCCcccccCCccccccc--CcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhh
Confidence            999999999985  7899999999998765432110000  001123445677777766666677899999887776654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.52  E-value=2.7e-14  Score=159.61  Aligned_cols=191  Identities=16%  Similarity=0.112  Sum_probs=112.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+........                                  .....+.+|++
T Consensus        59 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~----------------------------------~~~~~~~~E~~  104 (458)
T 3rp9_A           59 HLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDL----------------------------------IDCKRILREIA  104 (458)
T ss_dssp             CC-------CEEEEEECC--CEEEEEEECSTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             eEeeecCCeEEEEEEECCCCcEEEEEEechhhcCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  59999999876532211                                  01123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeee----ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~----e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++    .+..-+.+-.++.    +.....++||||++| .|.++.... ..++...+...+  +-..++.+|..|++
T Consensus       105 ~l~~l----~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~ii  178 (458)
T 3rp9_A          105 ILNRL----NHDHVVKVLDIVIPKDVEKFDELYVVLEIADS-DFKKLFRTP-VYLTELHIKTLLYNLLVGVKYVHSAGIL  178 (458)
T ss_dssp             HHHHC----CCTTBCCEEEECCCSCTTTCCCEEEEECCCSE-EHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHhC----CCCCCCceEEEEecCCcccCceEEEEEecccc-chhhhcccC-CCCCHHHHHHHHHHHHHHHHHHHhCCcC
Confidence            66665    2222233333331    112457999999865 566654321 224433333322  22348889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHH-------------HHHH--------HHHHHhhcCHHHHHHHHH-
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-------------GLLE--------AFYGIYEKDADKVLQAMV-  508 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~-------------~l~~--------l~~al~~~D~~~v~~~l~-  508 (760)
                      |+|+||+|||++.  ++.++|+|||++..++.....             .+..        -...-..++..+++++++ 
T Consensus       179 HrDlKp~NILl~~--~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~  256 (458)
T 3rp9_A          179 HRDLKPANCLVNQ--DCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELIL  256 (458)
T ss_dssp             CCCCCGGGEEECT--TCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHT
T ss_pred             CCCCChhhEEECC--CCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhh
Confidence            9999999999986  889999999999877532100             0000        001112346678888876 


Q ss_pred             HcCCCCCCCChHHHHHHHHHHHH
Q 004334          509 QMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       509 ~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ..+..+...|+++++-.+.+++.
T Consensus       257 ~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          257 LQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             TCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcHhHHHHHHHHHHHHHH
Confidence            33446677899999998888774

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=153.53  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=123.1

Q ss_pred             cccccccccEEEEEEE------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|+||+|+.      +|+.||||+.++...+.                                    ...+.
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~------------------------------------~~~~~   90 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH------------------------------------LRDFE   90 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHH------------------------------------HHHHH
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHH------------------------------------HHHHH
Confidence            6899999999999984      58999999987632111                                    12244


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  449 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~Gf  449 (760)
                      +|+..+.++    .+..-+.+..++... ....++||||++|++|.++.......++...+...+.  -..+..+|..|+
T Consensus        91 ~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  166 (326)
T 2w1i_A           91 REIEILKSL----QHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY  166 (326)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhC----CCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            565555544    222222332222221 1256999999999999997654433455554444332  234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||+||+++.  +++++|+|||++..++.......   ......++..+++++....+..++..|++++...+.++
T Consensus       167 vH~dikp~NIli~~--~~~~kL~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  241 (326)
T 2w1i_A          167 IHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEYYK---VKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  241 (326)
T ss_dssp             ECSCCCGGGEEEEE--TTEEEECCCTTCEECCSSCSEEE---CSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             eccCCCcceEEEcC--CCcEEEecCcchhhccccccccc---cccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHH
Confidence            99999999999986  78999999999988754321000   00001223345666666655556678999999888777


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       242 ~t  243 (326)
T 2w1i_A          242 FT  243 (326)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.51  E-value=4.8e-14  Score=151.43  Aligned_cols=181  Identities=14%  Similarity=0.102  Sum_probs=106.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                                         .+|..
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----------------------------------------~~e~~   73 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA-----------------------------------------RQEVD   73 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH-----------------------------------------HHHHH
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH-----------------------------------------HHHHH
Confidence            5799999999999999  5999999997652100                                         01111


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~L~qI~~~Gff  450 (760)
                      ..   .....+...+.+..++....   ...++||||++|++|.++..... ..++...+...+.  -..+..+|..|++
T Consensus        74 ~~---~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~iv  150 (336)
T 3fhr_A           74 HH---WQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIA  150 (336)
T ss_dssp             HH---HHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HH---HHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            11   11222333344444443322   23689999999999998764332 2345444443332  2347889999999


Q ss_pred             ccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      |+|+||.||+++.. .++.++|+|||++..........        ..+++.++++++...+..++..|++++...+.++
T Consensus       151 H~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l  222 (336)
T 3fhr_A          151 HRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQT--------PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL  222 (336)
T ss_dssp             CSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHEEEEecCCCceEEEeccccceecccccccc--------CCCCcCccChhhhCCCCCCchhhHHHHHHHHHHH
Confidence            99999999999742 24569999999998776543221        2346677888877555555567888888777665


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       223 ~~  224 (336)
T 3fhr_A          223 LC  224 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=155.15  Aligned_cols=184  Identities=13%  Similarity=0.070  Sum_probs=113.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.......                        ..           .+.+|++
T Consensus         8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~------------------------~~-----------~~~~E~~   52 (324)
T 3mtl_A            8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGA------------------------PC-----------TAIREVS   52 (324)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC------------------------------CC-----------CCCCCHH
T ss_pred             EEEcCCCCEEEEEEEECCCCcEEEEEEEeccccccc------------------------ch-----------hHHHHHH
Confidence            6899999999999999  589999999865321110                        00           0112333


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.+ .......++||||++| ++.++.......++...+...+  +-..+..+|..|++|+|+
T Consensus        53 ~l~~l----~h~~iv~~~~~-~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Di  126 (324)
T 3mtl_A           53 LLKDL----KHANIVTLHDI-IHTEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDL  126 (324)
T ss_dssp             HHSCC----CCTTBCCEEEE-EECSSCEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSC
T ss_pred             HHHhc----CCCCCCeeeeE-EeeCCEEEEEeccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCc
Confidence            33322    22222222222 2345667999999997 6666543333334444433322  234478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+||+++.  ++.++|+|||++...+......      ....++..++++++..- ...+...|++++...+.+++.
T Consensus       127 kp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  196 (324)
T 3mtl_A          127 KPQNLLINE--RGELKLADFGLARAKSIPTKTY------DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMAT  196 (324)
T ss_dssp             CGGGEEECT--TCCEEECSSSEEECC------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEECC--CCCEEEccCcccccccCCcccc------ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999985  7899999999998765432211      11134666777777643 334667799999987776653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.51  E-value=4.2e-14  Score=147.16  Aligned_cols=185  Identities=16%  Similarity=0.131  Sum_probs=120.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|+||+|+.  +|+.||||+.+..-..                                    ....+.+|+.
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~------------------------------------~~~~~~~e~~   71 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSR------------------------------------YSQPLHEEIA   71 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---------------------------------------HHHHHHHH
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchH------------------------------------HHHHHHHHHH
Confidence            4799999999999998  6899999987653111                                    0112344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHH--HHHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY--AVESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~--lv~~~L~qI~~~GffHa  452 (760)
                      .+..+    .+..-+.+-.++ ......++||||++|++|.++......  ..+...+...  .+...+..+|..|++|+
T Consensus        72 ~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~  146 (295)
T 2clq_A           72 LHKHL----KHKNIVQYLGSF-SENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHR  146 (295)
T ss_dssp             HHHTC----CCTTBCCEEEEE-EETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHhC----CCCCEeeEeeEE-EeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEcc
Confidence            44443    222223332322 334567999999999999987653321  2233333222  23345788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~--~~~~~D~~al~~~~~~~l  530 (760)
                      |++|.||+++. .++.++|+|||++..+......      .....++..++++++...+.  .+...|++++...+.+++
T Consensus       147 dl~p~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~  219 (295)
T 2clq_A          147 DIKGDNVLINT-YSGVLKISDFGTSKRLAGINPC------TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMA  219 (295)
T ss_dssp             CCSGGGEEEET-TTCCEEECCTTTCEESCC-----------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CCChhhEEEEC-CCCCEEEeecccccccCCCCCc------ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999984 3689999999999887643211      11224566777777776542  455679999988776665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       220 ~  220 (295)
T 2clq_A          220 T  220 (295)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.51  E-value=2.4e-14  Score=161.21  Aligned_cols=187  Identities=17%  Similarity=0.128  Sum_probs=123.6

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+........                         ..+.        ..+.+|+
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-------------------------~~~~--------~~~~~E~   77 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-------------------------KTDK--------ESLLREV   77 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB-------------------------SSCH--------HHHHHHH
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc-------------------------chHH--------HHHHHHH
Confidence            36899999999999999  69999999975421100                         0011        1234555


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+-.++ +.....++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|
T Consensus        78 ~~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~D  151 (484)
T 3nyv_A           78 QLLKQL----DHPNIMKLYEFF-EDKGYFYLVGEVYTGGELFDEIIS-RKRFSEVDAARIIRQVLSGITYMHKNKIVHRD  151 (484)
T ss_dssp             HHHTTC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHT-CSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHhC----CCCCCCcEEEEE-EeCCEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence            555444    222222232322 334567999999999999876532 2234444433332  22347889999999999


Q ss_pred             CCCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++. ..++.++|+|||++..++.....       .-..+++.++++++..- ..++..|++++...+.+++.
T Consensus       152 lkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~  222 (484)
T 3nyv_A          152 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKM-------KDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLS  222 (484)
T ss_dssp             CCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSH-------HHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEecCCCCCcEEEEeeeeeEEccccccc-------ccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHH
Confidence            9999999953 13678999999999877654321       11235667778887754 45777899999988776654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.51  E-value=5.4e-15  Score=157.59  Aligned_cols=184  Identities=15%  Similarity=0.029  Sum_probs=117.2

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+..|+.||||+.+..-...                                     .....|+..+
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~-------------------------------------~~~~~E~~~l   72 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQS-------------------------------------WQNEYEVYSL   72 (322)
T ss_dssp             EEEECSTTCEEEEEEETTEEEEEEEECGGGHHH-------------------------------------HHHHHHHHTS
T ss_pred             heecccCceEEEEEEECCCEEEEEEeecCchHH-------------------------------------HHHHHHHHHH
Confidence            689999999999999999999999976521110                                     0011233322


Q ss_pred             HHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC------
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH------  447 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~------  447 (760)
                      .+    +.+..-+.+-.++..-.   ...++||||++|++|.++....  .++...+....  +...+..+|..      
T Consensus        73 ~~----l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~~l~~  146 (322)
T 3soc_A           73 PG----MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKD  146 (322)
T ss_dssp             TT----CCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTCCEEEETT
T ss_pred             hc----CCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            22    22333333333333222   2259999999999999976432  34444333332  23347888988      


Q ss_pred             ----CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----CCCCCC
Q 004334          448 ----GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----LVPTGD  518 (760)
Q Consensus       448 ----GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-----~~~~~D  518 (760)
                          |++|+|+||.||+++.  ++.++|+|||++..+.......-    .....+++.++++++..-+.     .+...|
T Consensus       147 ~~~~~ivH~Dlkp~Nill~~--~~~~kL~DFg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  220 (322)
T 3soc_A          147 GHKPAISHRDIKSKNVLLKN--NLTACIADFGLALKFEAGKSAGD----THGQVGTRRYMAPEVLEGAINFQRDAFLRID  220 (322)
T ss_dssp             EEECEEECSCCSGGGEEECT--TCCEEECCCTTCEEECTTSCCCC----CTTCCCCGGGCCHHHHTTCCCCCHHHHHHHH
T ss_pred             ccCCCEEeCCCChHhEEECC--CCeEEEccCCcccccccccCccc----cccCccCccccCHhhcccccccCcCCCccch
Confidence                9999999999999985  78999999999987654321100    01123567777888775422     122348


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++.-.+.+++.
T Consensus       221 iwslG~il~el~t  233 (322)
T 3soc_A          221 MYAMGLVLWELAS  233 (322)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHh
Confidence            8888877766653

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.51  E-value=1.4e-14  Score=150.72  Aligned_cols=186  Identities=15%  Similarity=0.110  Sum_probs=121.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|++  +|+.||||+.+......-....                             +..+.+.+|+.
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~-----------------------------~~~~~~~~E~~   75 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMI-----------------------------EKFQEFQREVF   75 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHH-----------------------------CCSHHHHHHHH
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHH-----------------------------HHHHHHHHHHH
Confidence            6899999999999999  6999999998664322100000                             00022345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC--cccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG--FFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~G--ffHa  452 (760)
                      .+.++    . ++  .+++++..+.+..++||||++|++|.+........++...+...+.  -..+..+|.+|  ++|+
T Consensus        76 ~l~~l----~-h~--~i~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~  148 (287)
T 4f0f_A           76 IMSNL----N-HP--NIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHR  148 (287)
T ss_dssp             HHTTC----C-CT--TBCCEEEEETTTTEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCS
T ss_pred             HHHhC----C-CC--CchhhheeecCCCeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecC
Confidence            55544    2 22  3455565556677999999999999876543333455444433332  23478899999  9999


Q ss_pred             CCCCCcEEEeccCCCc-----EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCChHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDTTAVRRT  525 (760)
Q Consensus       453 DpHPGNILV~~~~~g~-----l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~--lG~~~~~~D~~al~~~  525 (760)
                      |+||.||+++.  ++.     ++|+|||++........         -..+++.+++++...  .+..++..|++++...
T Consensus       149 dikp~Nil~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~  217 (287)
T 4f0f_A          149 DLRSPNIFLQS--LDENAPVCAKVADFGLSQQSVHSVS---------GLLGNFQWMAPETIGAEEESYTEKADTYSFAMI  217 (287)
T ss_dssp             CCSGGGEEESC--CCTTCSCCEEECCCTTCBCCSSCEE---------CCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHH
T ss_pred             CCCcceEEEec--cCCCCceeEEeCCCCcccccccccc---------ccCCCccccCchhhccCCCCcCchhhHHHHHHH
Confidence            99999999975  444     99999999986655321         123555666676652  2223445789998887


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       218 l~~l~~  223 (287)
T 4f0f_A          218 LYTILT  223 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            766653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.51  E-value=6.7e-14  Score=147.59  Aligned_cols=191  Identities=13%  Similarity=0.089  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.-..                                    ....+.+|+.
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------------------------------------~~~~~~~E~~   78 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQ------------------------------------DREEAQREAD   78 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHH------------------------------------HHHHHHHHHH
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHH------------------------------------HHHHHHHHHH
Confidence            6899999999999998  6999999987552111                                    1112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeec---cCCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAV--ESYLEQILSHG  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e---~st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~lv--~~~L~qI~~~G  448 (760)
                      .+.++    .+..-+.+-..+..   .....++||||++|++|.++....   ...++...+...+.  -..+..+|..|
T Consensus        79 ~l~~l----~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~  154 (317)
T 2buj_A           79 MHRLF----NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG  154 (317)
T ss_dssp             HHHTC----CCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhc----CCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            55444    23222333333321   223568999999999999865431   22344444433332  23478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChh---hHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCChHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN---IREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAV  522 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~---~r~~l~~l~~al~~~D~~~v~~~l~~lG~---~~~~~D~~al  522 (760)
                      ++|+|+||.||+++.  ++.++|+|||++......   ........-.....+++.++++++.....   .++..|++++
T Consensus       155 ivH~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~sl  232 (317)
T 2buj_A          155 YAHRDLKPTNILLGD--EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSL  232 (317)
T ss_dssp             EECCCCCGGGEEECT--TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHH
T ss_pred             cccCCCCHHHEEEcC--CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHH
Confidence            999999999999985  789999999998876532   11111111112234566677777654221   3566799999


Q ss_pred             HHHHHHHHH
Q 004334          523 RRTAQFFLN  531 (760)
Q Consensus       523 ~~~~~~~l~  531 (760)
                      ...+.+++.
T Consensus       233 G~il~el~~  241 (317)
T 2buj_A          233 GCVLYAMMF  241 (317)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887776653

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.51  E-value=4.8e-14  Score=150.94  Aligned_cols=188  Identities=14%  Similarity=0.110  Sum_probs=118.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.-..                                   .....+.+|++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~E~~   61 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKP-----------------------------------LFALRTLREIK   61 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCSSH-----------------------------------HHHHHHHHHHH
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeecccccc-----------------------------------hHHHHHHHHHH
Confidence            6899999999999999  5999999998763211                                   11122345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeec----cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e----~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++    .+..-+.+-.++..    .....+++|||++| +|.++...  ..++...+...+  +-..+..+|..|++
T Consensus        62 ~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~iv  134 (353)
T 2b9h_A           62 ILKHF----KHENIITIFNIQRPDSFENFNEVYIIQELMQT-DLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHGSNVI  134 (353)
T ss_dssp             HHHHC----CCTTBCCEEEECCCSCSTTCCCEEEEECCCSE-EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHhC----cCCCcCCeeeeecccccCccceEEEEEeccCc-cHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            66554    22222222222211    12557999999986 67765432  234444433332  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHH----HHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA----FYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  525 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l----~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~  525 (760)
                      |+|+||+||+++.  ++.++|+|||++..++..........    -..-..++..++++++... +..++..|++++.-.
T Consensus       135 H~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~i  212 (353)
T 2b9h_A          135 HRDLKPSNLLINS--NCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCI  212 (353)
T ss_dssp             CSCCCGGGEEECT--TCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHH
T ss_pred             cCCCCHHHeEEcC--CCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHH
Confidence            9999999999985  88999999999998875432211100    0001235667788887654 445666799999887


Q ss_pred             HHHHH
Q 004334          526 AQFFL  530 (760)
Q Consensus       526 ~~~~l  530 (760)
                      +.+++
T Consensus       213 l~~l~  217 (353)
T 2b9h_A          213 LAELF  217 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76665

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.51  E-value=2.1e-14  Score=152.73  Aligned_cols=182  Identities=12%  Similarity=0.133  Sum_probs=110.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                           ..        ..+.+|+.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~--------~~~~~E~~   55 (317)
T 2pmi_A           11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---------------------------TP--------STAIREIS   55 (317)
T ss_dssp             --------CEEEEEECSSSCCEEEEEEEECCSTTC---------------------------SC--------HHHHHHHH
T ss_pred             eEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---------------------------cH--------HHHHHHHH
Confidence            6899999999999998  59999999876532111                           00        11234544


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhh-----cCCCHHHHHHH--HHHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-----LGVDRKRLGRY--AVESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~-----~g~d~~~la~~--lv~~~L~qI~~~  447 (760)
                      .+.++    .+ ++  |++++.  ......+|||||++| +|.++.....     .+++...+...  .+-..+..+|..
T Consensus        56 ~l~~l----~h-p~--iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~  127 (317)
T 2pmi_A           56 LMKEL----KH-EN--IVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN  127 (317)
T ss_dssp             HHTTC----CB-TT--BCCEEEEECCTTEEEEEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhc----CC-CC--cceEEEEEEECCeEEEEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44433    22 22  233333  334567999999997 7777654322     12343333222  223447889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  526 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~  526 (760)
                      |++|+|+||+||+++.  +|.++|+|||++..+......      .....++..++++++... ...++..|+++++-.+
T Consensus       128 ~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il  199 (317)
T 2pmi_A          128 KILHRDLKPQNLLINK--RGQLKLGDFGLARAFGIPVNT------FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCIL  199 (317)
T ss_dssp             TEECCCCCGGGEEECT--TCCEEECCCSSCEETTSCCCC------CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHH
T ss_pred             CeeeCCCChHHeEEcC--CCCEEECcCccceecCCCccc------CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999985  889999999999876532110      001124566777777653 3456678999999877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       200 ~el~~  204 (317)
T 2pmi_A          200 AEMIT  204 (317)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76653

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.51  E-value=2.8e-14  Score=151.80  Aligned_cols=185  Identities=15%  Similarity=0.128  Sum_probs=123.0

Q ss_pred             cccccccccEEEEEEE--CC-----eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KG-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G-----~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.  +|     ..||||+.++....                                   +....+
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~~~~~~   96 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHA-----------------------------------DEKEAL   96 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCH-----------------------------------HHHHHH
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhcccccCh-----------------------------------HHHHHH
Confidence            6899999999999998  23     47999998763211                                   111234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhh-------------cCCCHHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRLGRYA  436 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~-------------~g~d~~~la~~l  436 (760)
                      .+|++.+.++.    ++++  |++++  .......++||||++|++|.++.....             ..++...+...+
T Consensus        97 ~~E~~~l~~l~----~h~~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (333)
T 2i1m_A           97 MSELKIMSHLG----QHEN--IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFS  170 (333)
T ss_dssp             HHHHHHHHHHC----CCTT--BCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHhhc----CCCC--eeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHH
Confidence            56666666652    2333  23333  234567899999999999998764321             123333333322


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004334          437 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  514 (760)
Q Consensus       437 --v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~  514 (760)
                        +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ..+...+...+++++...-+..+
T Consensus       171 ~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~  244 (333)
T 2i1m_A          171 SQVAQGMAFLASKNCIHRDVAARNVLLTN--GHVAKIGDFGLARDIMNDSNYI----VKGNARLPVKWMAPESIFDCVYT  244 (333)
T ss_dssp             HHHHHHHHHHHHTTEECSCCSGGGCEEEG--GGEEEBCCCGGGCCGGGCTTSE----ECSSCEECGGGSCHHHHHHCCCC
T ss_pred             HHHHHHHHHHhcCCcccCCcccceEEECC--CCeEEECcccccccccccccee----ecCCCCCCccccCHHHhccCCCC
Confidence              233478899999999999999999986  7899999999998765432110    00111234567778877766667


Q ss_pred             CCCChHHHHHHHHHHH
Q 004334          515 PTGDTTAVRRTAQFFL  530 (760)
Q Consensus       515 ~~~D~~al~~~~~~~l  530 (760)
                      +..|++++...+.+++
T Consensus       245 ~~~Di~slG~il~el~  260 (333)
T 2i1m_A          245 VQSDVWSYGILLWEIF  260 (333)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7789999987776654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.51  E-value=1e-13  Score=147.15  Aligned_cols=191  Identities=12%  Similarity=0.079  Sum_probs=120.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....-.                       ..     -.+....+.+|+.
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~-----------------------~~-----~~~~~~~~~~E~~   67 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGS-----------------------AR-----EADPALNVETEIE   67 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC-------------------------------------------CHHHHHH
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcc-----------------------cc-----cchhhhhHHHHHH
Confidence            6899999999999998  5899999998763211000                       00     0001112445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+..++.  ....++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        68 ~l~~l----~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dl  140 (322)
T 2ycf_A           68 ILKKL----NHPCIIKIKNFFD--AEDYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHENGIIHRDL  140 (322)
T ss_dssp             HHHHC----CCTTBCCEEEEEE--SSSEEEEEECCTTEETHHHHST-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCCceEeeEEc--CCceEEEEecCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCC
Confidence            66655    2322333333332  3447999999999999886532 2234444333222  223478899999999999


Q ss_pred             CCCcEEEeccC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~-~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++... ++.++|+|||++..+......       ....++..++++++..   .+..+...|++++...+.+++
T Consensus       141 kp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~  213 (322)
T 2ycf_A          141 KPENVLLSSQEEDCLIKITDFGHSKILGETSLM-------RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL  213 (322)
T ss_dssp             SGGGEEESSSSSSCCEEECCCTTCEECCCCHHH-------HHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEecCCCCCeEEEccCccceeccccccc-------ccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHH
Confidence            99999997511 235999999999988764321       1123566677777653   234456779999998776665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       214 ~  214 (322)
T 2ycf_A          214 S  214 (322)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=158.80  Aligned_cols=187  Identities=17%  Similarity=0.116  Sum_probs=119.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           .        ...+.+|+.
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------~~~~~~E~~   59 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------P--------VDVQMREFE   59 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------C--------HHHHHHHHH
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------h--------HHHHHHHHH
Confidence            5799999999999999  49999999976421100                           0        012235666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++    .+..-+.+-.++.+.. ...+|||||++|++|.++......  +++...+...+  +-..+..+|..|++|
T Consensus        60 ~l~~l----~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH  135 (396)
T 4eut_A           60 VLKKL----NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVH  135 (396)
T ss_dssp             HHHHC----CCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhc----CCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEE
Confidence            66555    2322233333333222 256999999999999987643222  24544443333  234478899999999


Q ss_pred             cCCCCCcEEEecc--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--------CCCCCCCChHH
Q 004334          452 ADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--------GVLVPTGDTTA  521 (760)
Q Consensus       452 aDpHPGNILV~~~--~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l--------G~~~~~~D~~a  521 (760)
                      +|+||+||++...  .++.++|+|||++..+......       .-..++..++++++...        +..+...|+++
T Consensus       136 ~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwS  208 (396)
T 4eut_A          136 RNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF-------VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS  208 (396)
T ss_dssp             CCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGS-------SCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred             CCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcc-------ccccCCccccCHHHhhccccccccccCCCcHHHHHH
Confidence            9999999998321  2457999999999887664321       01234556666666543        22234568888


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      +.-.+.+++.
T Consensus       209 lG~il~el~t  218 (396)
T 4eut_A          209 IGVTFYHAAT  218 (396)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877666543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.51  E-value=7.4e-14  Score=147.63  Aligned_cols=187  Identities=20%  Similarity=0.170  Sum_probs=122.5

Q ss_pred             cccccccccEEEEEEE---CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||.|++|.||+|+.   +|+.||||+.++.....                       .   ...        .+.+|.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-----------------------~---~~~--------~~~~e~   62 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------G---MPL--------STIREV   62 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------S---CBC--------THHHHH
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-----------------------c---CCc--------hhhHHH
Confidence            6899999999999998   48999999876532110                       0   000        112344


Q ss_pred             HHHHHHHHhcCCCCceeeceeee----ccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~----e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~L~qI~~~G  448 (760)
                      ..+..+.. +.+..-+.+..++.    +.....++||||++| +|.++.... ..+++...+...+.  -..+..+|..|
T Consensus        63 ~~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g  140 (326)
T 1blx_A           63 AVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR  140 (326)
T ss_dssp             HHHHHHHH-TCCTTBCCEEEEEEEEECSSEEEEEEEEECCSC-BHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhc-cCCCCeEeeeeeeeecccCCCceEEEEEecCCC-CHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44444432 22222233333332    133457999999997 777765322 22345444433332  23478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||+||+++.  ++.++|+|||++..++....       .....++..++++++..-+..++..|++++...+.+
T Consensus       141 i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  211 (326)
T 1blx_A          141 VVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE  211 (326)
T ss_dssp             CCCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGG-------GCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred             ceeccCCHHHeEEcC--CCCEEEecCcccccccCCCC-------ccccccccceeCHHHHhcCCCCcchhHHHHHHHHHH
Confidence            999999999999985  88999999999988765431       111235666778888776667777899999887766


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       212 l~  213 (326)
T 1blx_A          212 MF  213 (326)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=156.31  Aligned_cols=199  Identities=16%  Similarity=0.141  Sum_probs=119.7

Q ss_pred             cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||+|++|.||+|+.     ++..||||+....-. ....+..+++.+..                        ..+.+
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~-~~~~e~~~~~~~~~------------------------~~~~~   97 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENG-PLFSELKFYQRVAK------------------------KDCIK   97 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC-C-HHHHHHHHHHHHCC------------------------HHHHH
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecCCc-chHHHHHHHHHHhh------------------------hHHHH
Confidence            6899999999999998     368999999876532 22233332222110                        01222


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeecc------CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~------st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      |...+..    +.+ +  .+++++..+      ....++||||+ |.+|.++..... .++...+...+  +-..+..+|
T Consensus        98 e~~~~~~----l~h-~--ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH  168 (345)
T 2v62_A           98 KWIERKQ----LDY-L--GIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH  168 (345)
T ss_dssp             HHHHHHT----CSC-C--CCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcc----ccc-c--CcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            3333322    222 2  234444321      34569999999 999998764332 34444443333  223478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l-~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      ..|++|+|+||.||+++....+.++|+|||++..+.+...... .........++..++++++..-+..++..|++++.-
T Consensus       169 ~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  248 (345)
T 2v62_A          169 ENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGY  248 (345)
T ss_dssp             HTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHH
T ss_pred             hCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHH
Confidence            9999999999999999862234999999999988765321100 000001224677788888887776677889999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       249 il~ell~  255 (345)
T 2v62_A          249 CMLRWLC  255 (345)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.50  E-value=1.4e-14  Score=151.06  Aligned_cols=188  Identities=16%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+........                                   ....+.+|+.
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~e~~   65 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT-----------------------------------SMDELLKEIQ   65 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC---------------------------------------------------
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcch-----------------------------------hHHHHHHHHH
Confidence            6899999999999998  69999999875421100                                   0011223333


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhh-------hcCCCHHHHHHHH--HHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD-------ELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~-------~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      .+.++    . +++  +++++.  ......++||||++|++|.++....       ...++...+...+  +-..+..+|
T Consensus        66 ~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH  138 (303)
T 2vwi_A           66 AMSQC----H-HPN--IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH  138 (303)
T ss_dssp             CCCCC----C-CTT--BCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhc----C-CCC--EeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            22222    2 222  333332  3346789999999999999876421       1223444333332  223478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  524 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~  524 (760)
                      ..|++|+|++|.||+++.  ++.++|+|||++..+.......-. -......++..++++++... ...++..|++++..
T Consensus       139 ~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  215 (303)
T 2vwi_A          139 KNGQIHRDVKAGNILLGE--DGSVQIADFGVSAFLATGGDITRN-KVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGI  215 (303)
T ss_dssp             HTTCCCCCCSGGGEEECT--TCCEEECCCHHHHHCC----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHH
T ss_pred             hCCCCCCCCChhhEEEcC--CCCEEEEeccchheeccCCCccch-hhhcccCCCccccCHHHhccccCCCchhhHHHHHH
Confidence            999999999999999985  889999999999877543211000 01111234556667776653 34566789999988


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       216 il~~l~~  222 (303)
T 2vwi_A          216 TAIELAT  222 (303)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766653

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.50  E-value=9.4e-14  Score=149.48  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=117.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+........                                  .....+.+|+
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~   74 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFAKRAYREL   74 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSH----------------------------------HHHHHHHHHH
T ss_pred             eeeEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------HHHHHHHHHH
Confidence            36899999999999998  59999999876532111                                  1122344566


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccC-----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~s-----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      ..+.++    .+..-+.+..++....     ...++||||++| +|.++..   ..++...+...+  +-..+..+|..|
T Consensus        75 ~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~LH~~~  146 (353)
T 3coi_A           75 LLLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMG---LKFSEEKIQYLVYQMLKGLKYIHSAG  146 (353)
T ss_dssp             HHHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECCSE-EGGGTTT---SCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhc----CCCCcccHhheEecccccccceeEEEEeccccC-CHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            666554    2323333334433221     134999999996 6665432   224444433332  223478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~  527 (760)
                      ++|+|+||+||+++.  ++.++|+|||++...+....         -..++..++++++... ...+...|++++...+.
T Consensus       147 ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~  215 (353)
T 3coi_A          147 VVHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMA  215 (353)
T ss_dssp             CCCSSCCGGGEEECT--TCCEEECSTTCTTC-----------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHH
T ss_pred             cccCCCCHHHEeECC--CCcEEEeecccccCCCCCcc---------ccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHH
Confidence            999999999999985  78999999999987654321         1234556677776654 45567789999998877


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       216 el~~  219 (353)
T 3coi_A          216 EMLT  219 (353)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.50  E-value=4.3e-14  Score=150.96  Aligned_cols=185  Identities=15%  Similarity=0.111  Sum_probs=120.7

Q ss_pred             cccccccccEEEEEEE---------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +.||.|++|+||+|+.         +|+.||||+.++...+.                                   ...
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~   85 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK-----------------------------------DLS   85 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHH-----------------------------------HHH
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHH-----------------------------------HHH
Confidence            6899999999999986         25789999987642111                                   112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhc---------------CCCHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL---------------GVDRKRL  432 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~---------------g~d~~~l  432 (760)
                      .+.+|+..+.++.    ++++  |++++.  ......++||||++|++|.++......               .++...+
T Consensus        86 ~~~~E~~~l~~l~----~hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T 2pvf_A           86 DLVSEMEMMKMIG----KHKN--IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL  159 (334)
T ss_dssp             HHHHHHHHHHHHC----CCTT--BCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHH
T ss_pred             HHHHHHHHHHHhh----cCCC--EeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHH
Confidence            2445666666552    2333  233332  334567999999999999997643221               1333333


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004334          433 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  510 (760)
Q Consensus       433 a~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l  510 (760)
                      ...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+.+.++++++..-
T Consensus       160 ~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  233 (334)
T 2pvf_A          160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPEALFD  233 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECTTTSSEEC----CSCCCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC--CCCEEEccccccccccccccccc----cCCCCcccceeChHHhcC
Confidence            3322  223478899999999999999999985  88999999999987754321000    000123345677777666


Q ss_pred             CCCCCCCChHHHHHHHHHHH
Q 004334          511 GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       511 G~~~~~~D~~al~~~~~~~l  530 (760)
                      +..++..|++++...+.+++
T Consensus       234 ~~~~~~~Di~slG~il~ell  253 (334)
T 2pvf_A          234 RVYTHQSDVWSFGVLMWEIF  253 (334)
T ss_dssp             CEECHHHHHHHHHHHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHHH
Confidence            66667789999987766554

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.50  E-value=2.5e-14  Score=149.42  Aligned_cols=186  Identities=14%  Similarity=0.084  Sum_probs=119.6

Q ss_pred             cccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|.||+|..    .|+.||||+.++.....                                  .....+.+|
T Consensus        23 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~e   68 (291)
T 1xbb_A           23 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------ALKDELLAE   68 (291)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C----------------------------------HHHHHHHHH
T ss_pred             CccccccCeeeEeeeecCCCceeeEEEEeecccccCH----------------------------------HHHHHHHHH
Confidence            4899999999999965    37899999987631110                                  112234456


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      ++.+..+    .+..-+.+-.++  .....++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+
T Consensus        69 ~~~l~~l----~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~  141 (291)
T 1xbb_A           69 ANVMQQL----DNPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESNFVHR  141 (291)
T ss_dssp             HHHHHTC----CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             HHHHHhC----CCCCEEEEEEEE--CCCCcEEEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHhCCeEcC
Confidence            5555544    222223333333  345679999999999999876432 224444433332  2334788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||.||+++.  ++.++|+|||++..+.........   .....+...+++++....+..++..|++++...+.+++
T Consensus       142 dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  214 (291)
T 1xbb_A          142 DLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAF  214 (291)
T ss_dssp             CCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEeC--CCcEEEccCCcceeeccCCCcccc---cccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHH
Confidence            99999999986  789999999999887543211000   00112334566777766555566789999987776654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.50  E-value=3.8e-14  Score=160.79  Aligned_cols=197  Identities=16%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+........-               +..        +-.....+....+.+|+
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~---------------~~~--------~~~~~~~~~~~~~~~E~   97 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKG---------------RYS--------DDNKNIEKFHEEIYNEI   97 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC---------------------------------------CTHHHHHHHH
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccc---------------ccc--------ccchhhHHHHHHHHHHH
Confidence            36899999999999999  589999999876321100               000        00000112233455676


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      ..+.++    .+..-+.+-.++ +.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|
T Consensus        98 ~~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~D  171 (504)
T 3q5i_A           98 SLLKSL----DHPNIIKLFDVF-EDKKYFYLVTEFYEGGELFEQIIN-RHKFDECDAANIMKQILSGICYLHKHNIVHRD  171 (504)
T ss_dssp             HHHHTC----CCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHHhC----CCCCCCeEEEEE-EcCCEEEEEEecCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCC
Confidence            666655    222222333332 344567999999999999876532 2334444433332  22347889999999999


Q ss_pred             CCCCcEEEeccCC-CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNG-GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~-g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.||+++.... ..++|+|||++..++.....       ....+++.+++++++. +..++..|++++...+.+++.
T Consensus       172 lkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~  242 (504)
T 3q5i_A          172 IKPENILLENKNSLLNIKIVDFGLSSFFSKDYKL-------RDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLC  242 (504)
T ss_dssp             CSGGGEEESSTTCCSSEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHH
T ss_pred             CcHHHEEEecCCCCccEEEEECCCCEEcCCCCcc-------ccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHh
Confidence            9999999985111 26999999999887654211       1123677788888876 456777899999988776654

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.50  E-value=3.1e-14  Score=152.12  Aligned_cols=192  Identities=14%  Similarity=0.135  Sum_probs=117.5

Q ss_pred             hcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       293 F~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +..|. .+.||.|++|.||+|+.  +|+.||||+.+......                                  +...
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~   78 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE----------------------------------GVPG   78 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------------------------------------
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc----------------------------------ccch
Confidence            34453 36899999999999998  69999999986532111                                  0111


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.+|+..+.++    .+..-+.+-.++ ......+|||||++| +|.++.... ..++...+...+  +-..+..+|..
T Consensus        79 ~~~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~L~~~~~~~-~~~~~~~~~~i~~ql~~~l~~LH~~  151 (329)
T 3gbz_A           79 TAIREVSLLKEL----QHRNIIELKSVI-HHNHRLHLIFEYAEN-DLKKYMDKN-PDVSMRVIKSFLYQLINGVNFCHSR  151 (329)
T ss_dssp             -CHHHHHHGGGC----CCTTBCCEEEEE-EETTEEEEEEECCSE-EHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHc----CCCCcceEEEEE-ecCCEEEEEEecCCC-CHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            223455444443    232223333333 345667999999997 777765322 224444333322  22347889999


Q ss_pred             CccccCCCCCcEEEecc---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHH
Q 004334          448 GFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVR  523 (760)
Q Consensus       448 GffHaDpHPGNILV~~~---~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~  523 (760)
                      |++|+|+||.||+++..   .++.++|+|||++..++......      ....++..++++++..-+ ..++..|++++.
T Consensus       152 ~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  225 (329)
T 3gbz_A          152 RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQF------THEIITLWYRPPEILLGSRHYSTSVDIWSIA  225 (329)
T ss_dssp             TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------------CCTTCCHHHHTTCCCCCTHHHHHHHH
T ss_pred             CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccccc------CCCcCCccccCHHHhcCCCCCCcHHHHHHHH
Confidence            99999999999999631   24569999999998775432211      111235567777776543 356778999999


Q ss_pred             HHHHHHHH
Q 004334          524 RTAQFFLN  531 (760)
Q Consensus       524 ~~~~~~l~  531 (760)
                      ..+.+++.
T Consensus       226 ~il~ell~  233 (329)
T 3gbz_A          226 CIWAEMLM  233 (329)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=146.24  Aligned_cols=189  Identities=13%  Similarity=0.057  Sum_probs=109.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.-.                                    +....+.+|..
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------------------------------~~~~~~~~e~~   77 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEE------------------------------------EKNRAIIQEVC   77 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSH------------------------------------HHHHHHHHHHH
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCch------------------------------------HHHHHHHHHHH
Confidence            6899999999999998  699999998755311                                    11123445666


Q ss_pred             HHHHHHHhcCCCCc-eeeceeee-------ccCCCeEEEEeecCCCchhhhhhh-h-hcCCCHHHHHHHH--HHHHHHHH
Q 004334          377 NAELFASNFKDMDY-VKVPTIFW-------EYTTPQILTMEYVPGIKINRIQSL-D-ELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~-------e~st~~vLVME~ieG~~L~d~~~l-~-~~g~d~~~la~~l--v~~~L~qI  444 (760)
                      .+.++.    ++++ +.+-.++.       ......+++|||++| +|.++... . ...++...+...+  +-..+..+
T Consensus        78 ~l~~l~----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~g-~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~L  152 (337)
T 3ll6_A           78 FMKKLS----GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKG-QLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHM  152 (337)
T ss_dssp             HHHHHT----TSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCSE-EHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc----cCCChhhccccccccccccccCCceEEEEEEecCC-CHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            666653    2222 22222221       112336999999986 66664432 1 2224444443332  22348889


Q ss_pred             HhCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHH------HHHhhcCHHHHHHHHHH---cCCC
Q 004334          445 LSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF------YGIYEKDADKVLQAMVQ---MGVL  513 (760)
Q Consensus       445 ~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~------~al~~~D~~~v~~~l~~---lG~~  513 (760)
                      |..|  ++|+|+||.||+++.  ++.++|+|||++..++..........-      .....+++.++++++..   -...
T Consensus       153 H~~~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  230 (337)
T 3ll6_A          153 HRQKPPIIHRDLKVENLLLSN--QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPI  230 (337)
T ss_dssp             HTSSSCCBCCCCCGGGCEECT--TSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCS
T ss_pred             HhCCCCEEEccCCcccEEECC--CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCC
Confidence            9999  999999999999985  789999999999887654322111000      00123567788888874   3334


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      ++..|++++...+.+++
T Consensus       231 ~~~~Dv~slG~il~el~  247 (337)
T 3ll6_A          231 GEKQDIWALGCILYLLC  247 (337)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             ChHHhHHHHHHHHHHHH
Confidence            55679999988776654

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.50  E-value=3.2e-14  Score=151.41  Aligned_cols=185  Identities=16%  Similarity=0.114  Sum_probs=118.4

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+..+.-..                                       .+.+|+..+
T Consensus        48 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~---------------------------------------~~~~e~~~~   88 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREER---------------------------------------SWFREAEIY   88 (342)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEECGGGHH---------------------------------------HHHHHHHHH
T ss_pred             eeecCCCCcEEEEEEEcCccEEEEEeCchhHH---------------------------------------HHHHHHHHH
Confidence            68999999999999999999999997652111                                       112233333


Q ss_pred             HHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH--------
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL--------  445 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~--------  445 (760)
                      ....  +.+..-+.+-.++....   ...++||||++|++|.++...  ...+...+...+  +...+..+|        
T Consensus        89 ~~~~--l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~  164 (342)
T 1b6c_B           89 QTVM--LRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQG  164 (342)
T ss_dssp             HHSC--CCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTC
T ss_pred             HHhh--cCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            2211  22222233333332222   267999999999999997643  334444443333  223478899        


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC------CCCCh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV------PTGDT  519 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~------~~~D~  519 (760)
                      ..|++|+|+||.||+++.  +++++|+|||++..+.......-  .......++..++++++...+...      +..|+
T Consensus       165 ~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di  240 (342)
T 1b6c_B          165 KPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTID--IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI  240 (342)
T ss_dssp             BCEEECSCCSGGGEEECT--TSCEEECCCTTCEEEETTTTEEE--ECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHH
T ss_pred             cCCeeeCCCCHHHEEECC--CCCEEEEECCCceeccccccccc--cccccCCcCcccCCHhhhcccccccccccCCcccH
Confidence            899999999999999985  78999999999987654321000  000112356677888877654221      34688


Q ss_pred             HHHHHHHHHHH
Q 004334          520 TAVRRTAQFFL  530 (760)
Q Consensus       520 ~al~~~~~~~l  530 (760)
                      +++...+.+++
T Consensus       241 ~slG~il~el~  251 (342)
T 1b6c_B          241 YAMGLVFWEIA  251 (342)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887776655

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.50  E-value=3.1e-14  Score=149.65  Aligned_cols=183  Identities=18%  Similarity=0.150  Sum_probs=118.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                    ...+.+|+.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~~~~~e~~   58 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR------------------------------------DSSLENEIA   58 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC------------------------------------------HHHHHHH
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEecccccc------------------------------------hHHHHHHHH
Confidence            6899999999999998  59999999977531100                                    012345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.+ .......++||||++|++|.+..... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        59 ~l~~l----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~di  132 (304)
T 2jam_A           59 VLKKI----KHENIVTLEDI-YESTTHYYLVMQLVSGGELFDRILER-GVYTEKDASLVIQQVLSAVKYLHENGIVHRDL  132 (304)
T ss_dssp             HHHHC----CCTTBCCEEEE-EECSSEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSC
T ss_pred             HHHhC----CCCCeeehhhh-cccCCEEEEEEEcCCCccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCC
Confidence            55554    22222222222 23456679999999999998865322 234444333322  223478899999999999


Q ss_pred             CCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||++.. ..++.++|+|||++.........        ...+++.++++++...+..++..|++++...+.+++.
T Consensus       133 kp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  202 (304)
T 2jam_A          133 KPENLLYLTPEENSKIMITDFGLSKMEQNGIMS--------TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLC  202 (304)
T ss_dssp             CGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTH--------HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEecCCCCCCEEEccCCcceecCCCccc--------cccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHH
Confidence            999999932 13688999999998766543211        1234555666666554445556788888877666543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.50  E-value=1.2e-13  Score=150.38  Aligned_cols=180  Identities=19%  Similarity=0.224  Sum_probs=116.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|+.
T Consensus        48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~~~~~E~~   93 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFAKRAYRELL   93 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------hHHHHHHHHHH
Confidence            6799999999999998  59999999886532111                                  11223445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCC-----CeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st-----~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+..+    .+..-+.+..++.....     ..++||||++| .|.+..   ...++...+...+  +-..+..+|..|+
T Consensus        94 ~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~i  165 (371)
T 4exu_A           94 LLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIM---GMEFSEEKIQYLVYQMLKGLKYIHSAGV  165 (371)
T ss_dssp             HHHHC----CCTTBCCCSEEECSCSSSTTCCCCEEEEECCCE-EHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhc----CCCCchhhhhheeccCCcccceeEEEEEccccc-cHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            56554    23333344444432221     23999999996 555543   2224444443332  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~  528 (760)
                      +|+|+||.||+++.  ++.++|+|||++...+....         -..+++.++++++..- ...++..|++++...+.+
T Consensus       166 vH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  234 (371)
T 4exu_A          166 VHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAE  234 (371)
T ss_dssp             CCSCCCGGGEEECT--TCCEEECSTTCC-----------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHH
T ss_pred             cCCCcCHHHeEECC--CCCEEEEecCcccccccCcC---------CcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHH
Confidence            99999999999985  88999999999987654321         1234666778887754 456777899999988776


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       235 l~~  237 (371)
T 4exu_A          235 MLT  237 (371)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.49  E-value=8.4e-15  Score=150.99  Aligned_cols=186  Identities=19%  Similarity=0.201  Sum_probs=117.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                                   ....+.+|+.
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~e~~   57 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------CPENIKKEIC   57 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTT-----------------------------------HHHHHHHHHH
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeeccchh-----------------------------------hhHHHHHHHH
Confidence            6899999999999998  59999999976521110                                   1122344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+..-+.+-.++ ......++||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        58 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  131 (276)
T 2yex_A           58 INKML----NHENVVKFYGHR-REGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDI  131 (276)
T ss_dssp             HHHTC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhc----CCCCceeeeeEE-EcCCEEEEEEEecCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCC
Confidence            44433    222222222222 3345679999999999998875322 224444333332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.  ++.++|+|||++..+........    .....++..++++++...+.. +...|++++...+.+++.
T Consensus       132 ~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  203 (276)
T 2yex_A          132 KPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA  203 (276)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHEEEcc--CCCEEEeeCCCccccCCCcchhc----ccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHh
Confidence            999999985  78999999999987643221100    001224555666666543322 345688888877666543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.49  E-value=5.8e-14  Score=152.13  Aligned_cols=186  Identities=15%  Similarity=0.131  Sum_probs=123.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.-..                                   .....+.+|++
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~E~~   77 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQ-----------------------------------TYCQRTLREIK   77 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCH-----------------------------------HHHHHHHHHHH
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCc-----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  6999999998763211                                   11123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++.    +..-+.+..++....    ...++||||++| +|.++...  ..++...+...+  +-..+..+|..|++
T Consensus        78 ~l~~l~----h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~-~L~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH~~~iv  150 (364)
T 3qyz_A           78 ILLRFR----HENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLLKT--QHLSNDHICYFLYQILRGLKYIHSANVL  150 (364)
T ss_dssp             HHHHCC----CTTBCCCCEEECCSSTTTCCCEEEEEECCSE-EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHhcC----CCCCccceeEEecCCccccceEEEEEcccCc-CHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            666552    322333333332211    357999999997 67665432  234444443332  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~  529 (760)
                      |+|+||+||+++.  ++.++|+|||++...+......-   ...-..+++.++++++..-+ ..++..|++++...+.++
T Consensus       151 H~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el  225 (364)
T 3qyz_A          151 HRDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTG---FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM  225 (364)
T ss_dssp             CCCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCC---TTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHH
T ss_pred             cCCCChHhEEECC--CCCEEEEeCcceEecCCCCCccc---cccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHH
Confidence            9999999999985  88999999999988765422100   00112356677788865443 356778999999887766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       226 l~  227 (364)
T 3qyz_A          226 LS  227 (364)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.49  E-value=2.6e-14  Score=161.27  Aligned_cols=190  Identities=18%  Similarity=0.194  Sum_probs=124.3

Q ss_pred             cccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ..|. .+.||.|++|.||+|+.  +|+.||||+..+.....                          .+        ...
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------~~--------~~~   67 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KD--------TST   67 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC--------------------------SC--------HHH
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc--------------------------hH--------HHH
Confidence            3443 36899999999999998  59999999875411000                          01        123


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  448 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~G  448 (760)
                      +.+|+..+.++    .+..-+.+-.++ ......++||||++|++|.+..... ..++...+...+.  -..+..+|..|
T Consensus        68 ~~~E~~~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~  141 (486)
T 3mwu_A           68 ILREVELLKKL----DHPNIMKLFEIL-EDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKHN  141 (486)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCcCeEEEEE-EcCCEEEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            45566666655    222223333333 3456679999999999998765322 2344444333322  23478899999


Q ss_pred             ccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~  527 (760)
                      ++|+|+||.||+++.. .++.++|+|||++..+......       .-..+++.++++++.. |..++..|++++...+.
T Consensus       142 ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~  213 (486)
T 3mwu_A          142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM-------KDRIGTAYYIAPEVLR-GTYDEKCDVWSAGVILY  213 (486)
T ss_dssp             CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-----------CCTTGGGGCCGGGGG-SCCCHHHHHHHHHHHHH
T ss_pred             eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCcc-------CCCcCCCCCCCHHHhC-CCCCchhhHHHHHHHHH
Confidence            9999999999999631 2568999999999877654321       1123566777777765 44566779999998777


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       214 ~ll~  217 (486)
T 3mwu_A          214 ILLS  217 (486)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.49  E-value=3.8e-14  Score=150.76  Aligned_cols=188  Identities=15%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|++|.||+|+.       +|+.||||+.+......                                   ....+
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   80 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ-----------------------------------DELDF   80 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSSCCHH-----------------------------------HHHHH
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchh-----------------------------------hHHHH
Confidence            6899999999999994       46789999876432111                                   11123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh------cCCCHHHHHHHH--HHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~------~g~d~~~la~~l--v~~~L~q  443 (760)
                      .+|+..+.++    .+..-+.+-.+ .......++||||++|++|.++.....      ..++...+...+  +-..+..
T Consensus        81 ~~E~~~l~~l----~h~~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  155 (327)
T 2yfx_A           81 LMEALIISKF----NHQNIVRCIGV-SLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY  155 (327)
T ss_dssp             HHHHHHHHHC----CCTTBCCEEEE-ECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC----CCCCCCeEEEE-EcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            4566655554    22222222222 233456799999999999999765332      123333333322  2234788


Q ss_pred             HHhCCccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHH
Q 004334          444 ILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  522 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al  522 (760)
                      +|..|++|+|++|.||+++.. ++..++|+|||++..+.......    ......++..++++++...+..++..|++++
T Consensus       156 LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  231 (327)
T 2yfx_A          156 LEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR----KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSF  231 (327)
T ss_dssp             HHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccc----cCCCcCCCcceeCHhHhcCCCCCchhhHHHH
Confidence            999999999999999999841 13469999999987553322110    0111234556778887776767778899999


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      ...+.+++
T Consensus       232 G~il~ell  239 (327)
T 2yfx_A          232 GVLLWEIF  239 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.49  E-value=4.9e-14  Score=150.79  Aligned_cols=185  Identities=13%  Similarity=0.108  Sum_probs=115.2

Q ss_pred             cccccccccEEEEEEE--CCee----EEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~----VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|++|.||+|+.  +|+.    |++|..+......                           .        ...+.
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~---------------------------~--------~~~~~   65 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK---------------------------A--------NKEIL   65 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCC---------------------------C--------HHHHH
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHH---------------------------H--------HHHHH
Confidence            6899999999999998  5665    4666654421111                           0        11234


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|+..+.++    .+..-+.+-.++  .....+++|||++|++|.++.......++...+...+  +-..+..+|..|++
T Consensus        66 ~E~~~l~~l----~hp~iv~~~~~~--~~~~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~iv  139 (327)
T 3lzb_A           66 DEAYVMASV----DNPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLV  139 (327)
T ss_dssp             HHHHHHTTC----CBTTBCCCCEEE--ESSSEEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhC----CCCCeeEEEEEE--ecCCceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            455555444    222222333333  2345789999999999998765444445554444333  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  ++.++|+|||++..+.........    ....+...+++++...-+..++..|++++...+.+++
T Consensus       140 H~Dikp~NIl~~~--~~~~kL~DfG~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell  213 (327)
T 3lzb_A          140 HRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM  213 (327)
T ss_dssp             CSCCCGGGEEEEE--TTEEEECCTTC--------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHEEEcC--CCCEEEccCcceeEccCccccccc----cCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            9999999999986  889999999999887654332211    1123345677788777666677789999988776655

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.49  E-value=3.4e-14  Score=160.82  Aligned_cols=185  Identities=17%  Similarity=0.161  Sum_probs=118.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                          ..        ...+.+|+.
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------------------~~--------~~~~~~E~~   88 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST--------------------------SS--------NSKLLEEVA   88 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-------------------------------CT--------THHHHHHHH
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc--------------------------hH--------HHHHHHHHH
Confidence            6899999999999999  58999999986521100                          00        112345555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++ +.....++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        89 ~l~~l----~hpniv~~~~~~-~~~~~~~lv~e~~~~g~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dl  162 (494)
T 3lij_A           89 VLKLL----DHPNIMKLYDFF-EDKRNYYLVMECYKGGELFDEIIH-RMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDL  162 (494)
T ss_dssp             HHTTC----CCTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhC----CCCCCCeEEEEE-EeCCEEEEEEecCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccC
Confidence            55443    222223333333 344567999999999999875432 2234443333322  223478899999999999


Q ss_pred             CCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++.. .++.++|+|||++..+......       .-..+++.+++++++. +..++..|++++...+.+++.
T Consensus       163 kp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~  232 (494)
T 3lij_A          163 KPENLLLESKEKDALIKIVDFGLSAVFENQKKM-------KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLA  232 (494)
T ss_dssp             SGGGEEESCSSTTCCEEECCCTTCEECBTTBCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEEeCCCCCCcEEEEECCCCeECCCCccc-------cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHh
Confidence            9999999742 2356999999999877643211       1123667778888775 446777899999987776654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.49  E-value=3.4e-14  Score=152.87  Aligned_cols=189  Identities=16%  Similarity=0.064  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                    ..........        .+.+|+.
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~--------------------~~~~~~~~~~--------~~~~E~~   81 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLE--------------------DCWIEDPKLG--------KVTLEIA   81 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCT--------------------TSEEEETTTE--------EEEHHHH
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhhccc--------------------ccccchHHHH--------HHHHHHH
Confidence            6899999999999998  69999999987642110                    0000000000        1123444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCC-chhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~-~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+..-+.+-.+ .......++||||+.++ +|.++.... ..++...+...+  +-..+..+|..|++|+|
T Consensus        82 ~l~~l----~h~~Iv~~~~~-~~~~~~~~lv~e~~~~g~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~D  155 (335)
T 3dls_A           82 ILSRV----EHANIIKVLDI-FENQGFFQLVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLRLKDIIHRD  155 (335)
T ss_dssp             HHTTC----CCTTBCCEEEE-EECSSEEEEEEECCTTSCBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             HHHhC----CCCCEeeEEEE-EeeCCEEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEEec
Confidence            44433    22222222222 23455678999998655 888765322 224444333322  23347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l  530 (760)
                      +||.||+++.  ++.++|+|||++..+......       ....+++.++++++..-... ++..|++++...+.+++
T Consensus       156 lkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~  224 (335)
T 3dls_A          156 IKDENIVIAE--DFTIKLIDFGSAAYLERGKLF-------YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLV  224 (335)
T ss_dssp             CSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHH
T ss_pred             cCHHHEEEcC--CCcEEEeecccceECCCCCce-------eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHH
Confidence            9999999986  789999999999887654211       11236777888887765443 55679999988777665

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.49  E-value=1.1e-13  Score=149.18  Aligned_cols=194  Identities=15%  Similarity=0.162  Sum_probs=118.6

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|++|.||+|+. +|+.||||+.++.....-                        ...... -......+.+|++.
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~------------------------~~~~~~-~~~~~~~~~~E~~~   82 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGR------------------------TVNILS-DSFLCKRVLREIRL   82 (362)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEEECEECCTTS------------------------CEEGGG-SHHHHHHHHHHHHH
T ss_pred             EEeccCCCEEEEEEECCCCCeEEEEeccccCCccc------------------------hhhhhh-hhhHHHHHHHHHHH
Confidence            6899999999999998 799999998865322110                        000000 01222345677777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccC----CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~s----t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      +.++.    +..-+.+..++....    ...++||||++| ++.+........++...+...+  +-..+..+|..|++|
T Consensus        83 l~~l~----h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH  157 (362)
T 3pg1_A           83 LNHFH----HPNILGLRDIFVHFEEPAMHKLYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVH  157 (362)
T ss_dssp             HHHCC----CTTBCCCSEEEEECCTTTCCEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHhCC----CcCccceeeeEEeccCCCcceEEEEEccCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEe
Confidence            77662    333344444443222    246999999997 5555443333334544443332  223478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++|+|||++..........       ...++..++++++..- +..++..|++++...+.+++
T Consensus       158 ~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~  228 (362)
T 3pg1_A          158 RDLHPGNILLAD--NNDITICDFNLAREDTADANKT-------HYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF  228 (362)
T ss_dssp             CCCCGGGEEECT--TCCEEECCTTC----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHH
T ss_pred             cCCChHHEEEcC--CCCEEEEecCcccccccccccc-------eecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHH
Confidence            999999999985  7899999999997654432211       1234556677776654 45567789999998877665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       229 ~  229 (362)
T 3pg1_A          229 N  229 (362)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.49  E-value=3.8e-14  Score=152.24  Aligned_cols=196  Identities=15%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             hcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       293 F~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +..|. .+.||.|++|.||+|+.  +|+.||||+........                          ..        ..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--------------------------~~--------~~   61 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--------------------------GF--------PI   61 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS--------------------------SS--------CH
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc--------------------------cc--------hH
Confidence            34443 36899999999999999  59999999875532111                          00        01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeecc-------CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEY-------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESY  440 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~-------st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~  440 (760)
                      .+.+|++.+.++    .+...+.+-.++...       .+..++||||++| ++.+........++...+...+  +-..
T Consensus        62 ~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~  136 (351)
T 3mi9_A           62 TALREIKILQLL----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNG  136 (351)
T ss_dssp             HHHHHHHHHHHC----CCTTBCCEEEEEEEC--------CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----cCCCcccHhheeeccccccccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            223455555554    233333333333322       3356999999998 4444332222234444433332  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCh
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDT  519 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~  519 (760)
                      +..+|..|++|+|+||+||+++.  ++.++|+|||++..++........  -.....+++.++++++..- ...++..|+
T Consensus       137 l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di  212 (351)
T 3mi9_A          137 LYYIHRNKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPN--RYTNRVVTLWYRPPELLLGERDYGPPIDL  212 (351)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCCCSSSSCC--CCCSSCSCGGGCCHHHHTTCCSCCTHHHH
T ss_pred             HHHHHHCCeeCCCCCHHHEEEcC--CCCEEEccchhccccccccccccc--ccCCcccccCccCchhhcCCCCCCcHhHH
Confidence            78899999999999999999985  789999999999876522110000  0001134666778887643 334677899


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++++..+.+++.
T Consensus       213 wslG~il~ell~  224 (351)
T 3mi9_A          213 WGAGCIMAEMWT  224 (351)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999987776653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.48  E-value=9.4e-14  Score=142.23  Aligned_cols=182  Identities=11%  Similarity=0.049  Sum_probs=119.3

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+.+......                                  +..+.+.+|+..+
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~~~~E~~~l   61 (271)
T 3kmu_A           16 TKLNENHSGELWKGRWQGNDIVVKVLKVRDWST----------------------------------RKSRDFNEECPRL   61 (271)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEECCTTCCH----------------------------------HHHHHHHHHGGGG
T ss_pred             HHhcCCCcceEEEEEECCeeEEEEEecccccCH----------------------------------HHHHHHHHHHHHH
Confidence            689999999999999999999999987632111                                  0111234444443


Q ss_pred             HHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhhhc-CCCHHHHHHHHH--HHHHHHHHhCC--cccc
Q 004334          379 ELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAV--ESYLEQILSHG--FFHA  452 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~~~-g~d~~~la~~lv--~~~L~qI~~~G--ffHa  452 (760)
                      .++    .+..-+.+-.++..- ....+++|||++|++|.++...... .++...+...+.  -..+..+|..|  ++|+
T Consensus        62 ~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~  137 (271)
T 3kmu_A           62 RIF----SHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRH  137 (271)
T ss_dssp             CCC----SCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTC
T ss_pred             Hhc----CCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence            333    222223333322221 1456999999999999997653322 245444443332  23478899999  9999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC---CCChHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP---TGDTTAVRRTAQFF  529 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~---~~D~~al~~~~~~~  529 (760)
                      |+||.||+++.  ++.+++.|||+........           ..+++.++++++........   ..|++++.-.+.++
T Consensus       138 dikp~Nil~~~--~~~~~l~~~~~~~~~~~~~-----------~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el  204 (271)
T 3kmu_A          138 ALNSRSVMIDE--DMTARISMADVKFSFQSPG-----------RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWEL  204 (271)
T ss_dssp             CCSGGGEEECT--TSCEEEEGGGSCCTTSCTT-----------CBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEcC--CcceeEEeccceeeecccC-----------ccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHH
Confidence            99999999985  7888888888765544322           13466778888876543333   47999998877666


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       205 ~~  206 (271)
T 3kmu_A          205 VT  206 (271)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.48  E-value=1.8e-14  Score=154.08  Aligned_cols=199  Identities=13%  Similarity=0.066  Sum_probs=122.2

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+.+|+.||||+.+........              ... ...........    ....+.+|+..+
T Consensus        37 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~--------------~~~-~~~~~~~~~~~----~~~~~~~E~~~l   97 (348)
T 2pml_X           37 RTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKR--------------DFT-KSNNDKISIKS----KYDDFKNELQII   97 (348)
T ss_dssp             EEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCE--------------EEC-CCSSSSCCEEE----HHHHHHHHHHHH
T ss_pred             EEEcCCCCeEEEEEEcCCceEEEEEeecccccchh--------------hhc-cccchhhhHHh----HHHHHHHHHHHH
Confidence            68999999999999999999999987653111000              000 00000000000    012345566666


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhh------hhhh-hcCCCHHHHHHHH--HHHHHHHHHh-CC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI------QSLD-ELGVDRKRLGRYA--VESYLEQILS-HG  448 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~------~~l~-~~g~d~~~la~~l--v~~~L~qI~~-~G  448 (760)
                      .++    .+..-+.+-.++ ......++||||++|++|.++      .... ...++...+...+  +-..+..+|. .|
T Consensus        98 ~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~  172 (348)
T 2pml_X           98 TDI----KNEYCLTCEGII-TNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN  172 (348)
T ss_dssp             TTC----CCTTBCCCSEEE-ESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HhC----CCCCcceEEEEE-eeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            554    222223333333 334667999999999999986      3211 2234444333322  2234788998 99


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCC-CCChHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVP-TGDTTAVRRTA  526 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~-~~D~~al~~~~  526 (760)
                      ++|+|+||.||+++.  ++.++|+|||++..+.....        ....++..++++++...+ .... ..|++++...+
T Consensus       173 i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il  242 (348)
T 2pml_X          173 ICHRDVKPSNILMDK--NGRVKLSDFGESEYMVDKKI--------KGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICL  242 (348)
T ss_dssp             EECCCCCGGGEEECT--TSCEEECCCTTCEECBTTEE--------CSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHH
T ss_pred             EeecCCChHhEEEcC--CCcEEEeccccccccccccc--------cCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHH
Confidence            999999999999985  88999999999987654311        112355666777766544 2223 67888888777


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       243 ~~l~~  247 (348)
T 2pml_X          243 YVMFY  247 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66553

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.48  E-value=1.1e-13  Score=149.05  Aligned_cols=186  Identities=12%  Similarity=0.060  Sum_probs=121.5

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+.+...                                     ...+.+|..
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------------------------------------~~~~~~e~~   67 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-------------------------------------TEAAEDEIK   67 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH-------------------------------------HHHHHHHHH
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEecCCccc-------------------------------------hhhhhHHHH
Confidence            6899999999999998  6999999998753110                                     011223444


Q ss_pred             HHHHHHHhc-------CCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhh-hhcCCCHHHHHHHH--HHHHHHH
Q 004334          377 NAELFASNF-------KDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       377 nl~~f~~~~-------~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~L~q  443 (760)
                      .+.++.+..       .+..-+.+-..+...   ....+++|||+ |.+|.++... ...+++...+...+  +-..+..
T Consensus        68 ~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  146 (373)
T 1q8y_A           68 LLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY  146 (373)
T ss_dssp             HHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Confidence            444443210       011112222222211   12569999999 8888886543 22335544443332  2234788


Q ss_pred             HHhC-CccccCCCCCcEEEecc----CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004334          444 ILSH-GFFHADPHPGNIAVDDV----NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  518 (760)
Q Consensus       444 I~~~-GffHaDpHPGNILV~~~----~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D  518 (760)
                      +|.. |++|+|+||.||+++..    ..+.++|+|||++..++.....         ..++..++++++..-+..++..|
T Consensus       147 lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~D  217 (373)
T 1q8y_A          147 MHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTN---------SIQTREYRSPEVLLGAPWGCGAD  217 (373)
T ss_dssp             HHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCS---------CCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             HHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCC---------CCCCccccCcHHHhCCCCCchHh
Confidence            9998 99999999999999631    2347999999999887654221         24577788888887776778889


Q ss_pred             hHHHHHHHHHHHH
Q 004334          519 TTAVRRTAQFFLN  531 (760)
Q Consensus       519 ~~al~~~~~~~l~  531 (760)
                      ++++...+.+++.
T Consensus       218 i~slG~il~el~~  230 (373)
T 1q8y_A          218 IWSTACLIFELIT  230 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988877664

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.48  E-value=1.9e-13  Score=160.79  Aligned_cols=184  Identities=17%  Similarity=0.180  Sum_probs=124.7

Q ss_pred             cccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|++|.||+|++.     +..||||+.+....+                                   +....+.+
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~  440 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSD-----------------------------------SVREKFLQ  440 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCH-----------------------------------HHHHHHHH
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCH-----------------------------------HHHHHHHH
Confidence            57999999999999982     467999987653211                                   11223456


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .+..-+.+-.++  ..+..++||||++|++|.++.......++...+...+  +...+..+|..|++|
T Consensus       441 E~~~l~~l----~HpnIv~l~~~~--~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH  514 (656)
T 2j0j_A          441 EALTMRQF----DHPHIVKLIGVI--TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVH  514 (656)
T ss_dssp             HHHHHHHC----CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCCCeEEEEE--ecCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            66666655    222223333332  2356799999999999999775444445555443332  334488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.|||++.  ++.++|+|||++..+........     ....+.+.++++++...+..++..|++++...+.+++
T Consensus       515 rDikp~NILl~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell  586 (656)
T 2j0j_A          515 RDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYKA-----SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL  586 (656)
T ss_dssp             SCCSGGGEEEEE--TTEEEECCCCCCCSCCC---------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccchHhEEEeC--CCCEEEEecCCCeecCCCcceec-----cCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHH
Confidence            999999999986  88999999999998865432111     1123455788888887777777789999987776654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.48  E-value=1.8e-13  Score=144.47  Aligned_cols=184  Identities=16%  Similarity=0.184  Sum_probs=117.2

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|+. +|+.||||+.+......                                  +....+.+|+..
T Consensus        34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~E~~~   79 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QTLDSYRNEIAY   79 (313)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECSSCCH----------------------------------HHHHHHHHHHHH
T ss_pred             EEecCCCCEEEEEEEcCCCcEEEEEEeccccccc----------------------------------cchHHHHHHHHH
Confidence            5899999999999999 69999999986532111                                  111234567777


Q ss_pred             HHHHHHhcCCCCceeeceee--eccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          378 AELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy--~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.++....   ++  +.+++  .......+++|| +.|++|.++.... ..++...+...+  +-..+..+|..|++|+|
T Consensus        80 l~~l~~~~---~~--iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~d  152 (313)
T 3cek_A           80 LNKLQQHS---DK--IIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSD  152 (313)
T ss_dssp             HHHHGGGC---TT--BCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHhccccC---Cc--eEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecC
Confidence            77775422   22  22232  233456799999 6677888875432 234433332222  22347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCChHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGDTTAV  522 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----------G~~~~~~D~~al  522 (760)
                      +||.||+++   ++.++|+|||++..+.........    ....+++.++++++...           +..+...|++++
T Consensus       153 lkp~NIl~~---~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~sl  225 (313)
T 3cek_A          153 LKPANFLIV---DGMLKLIDFGIANQMQPDTTSVVK----DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  225 (313)
T ss_dssp             CCGGGEEEE---TTEEEECCCSSSCC------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHH
T ss_pred             CCcccEEEE---CCeEEEeeccccccccCccccccc----cCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHH
Confidence            999999996   589999999999887654332111    12246777888887753           244556788988


Q ss_pred             HHHHHHHH
Q 004334          523 RRTAQFFL  530 (760)
Q Consensus       523 ~~~~~~~l  530 (760)
                      ...+.+++
T Consensus       226 G~il~el~  233 (313)
T 3cek_A          226 GCILYYMT  233 (313)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=3.5e-14  Score=167.26  Aligned_cols=176  Identities=21%  Similarity=0.195  Sum_probs=114.3

Q ss_pred             cccccccccEEEEEEE---CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l---~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      ..||.|++|.||+|++   +|+.||||+..+....                                   +....+.+|+
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~~~~~~~E~  130 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDA-----------------------------------EAQAMAMAER  130 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCH-----------------------------------HHHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCH-----------------------------------HHHHHHHHHH
Confidence            6899999999999998   4899999987653111                                   1111233454


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCC----eEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTP----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~----~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      +.+.++    .|..-+.+-.++......    .+|||||++|.+|.++...   .++...+...+  +-..+..+|.+|+
T Consensus       131 ~~l~~l----~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~gi  203 (681)
T 2pzi_A          131 QFLAEV----VHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSIGL  203 (681)
T ss_dssp             GGGGGC----CCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHhc----CCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            444433    232223333333222111    5999999999999886432   34444443333  2234888999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++.   +.++|+|||++..++..          ....+++.++++++...+. +...|++++...+.++
T Consensus       204 iHrDlkp~NIll~~---~~~kl~DFG~a~~~~~~----------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l  269 (681)
T 2pzi_A          204 VYNDLKPENIMLTE---EQLKLIDLGAVSRINSF----------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAAL  269 (681)
T ss_dssp             ECCCCSGGGEEECS---SCEEECCCTTCEETTCC----------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHH
T ss_pred             eecccChHHeEEeC---CcEEEEecccchhcccC----------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHH
Confidence            99999999999974   58999999999887654          1123566677777666554 5567888888777665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       270 ~  270 (681)
T 2pzi_A          270 T  270 (681)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.47  E-value=2.2e-13  Score=144.70  Aligned_cols=184  Identities=15%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+........                                   ..+..|..
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~-----------------------------------~~~~~e~~   72 (327)
T 3aln_A           28 GEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQ-----------------------------------KQLLMDLD   72 (327)
T ss_dssp             CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHH-----------------------------------HHHHHHHH
T ss_pred             heeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHH-----------------------------------HHHHHHHH
Confidence            6799999999999999  5999999998764321100                                   01111211


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhh----hhcCCCHHHHHHHH--HHHHHHHHHhC-Cc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYA--VESYLEQILSH-GF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l----~~~g~d~~~la~~l--v~~~L~qI~~~-Gf  449 (760)
                      .   +.+...+..-+.+-.++ ......++||||++| .+.++...    ....++...+...+  +-..+..+|.. |+
T Consensus        73 ~---~~~~~~h~niv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~i  147 (327)
T 3aln_A           73 V---VMRSSDCPYIVQFYGAL-FREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKI  147 (327)
T ss_dssp             H---HHSSCCCTTBCCEEEEE-ECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             H---HHHcCCCCcEeeeeeEE-EeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCE
Confidence            1   11222222222333322 334567999999998 66654431    12233433333322  22347788998 99


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCChHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDTTAVRRT  525 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~----lG~~~~~~D~~al~~~  525 (760)
                      +|+|++|.||+++.  ++.++|+|||++..+.......       ...++..++++++..    .+..++..|++++...
T Consensus       148 vH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~i  218 (327)
T 3aln_A          148 IHRDIKPSNILLDR--SGNIKLCDFGISGQLVDSIAKT-------RDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGIT  218 (327)
T ss_dssp             CCSCCCGGGEEEET--TTEEEECCCSSSCC-------------------------------------CCSHHHHHHHHHH
T ss_pred             eECCCCHHHEEEcC--CCCEEEccCCCceecccccccc-------cCCCCccccCceeeccccCcCCCCchhhHHHHHHH
Confidence            99999999999985  8899999999998876543211       123566788888773    3335667799999887


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       219 l~~l~~  224 (327)
T 3aln_A          219 LYELAT  224 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.47  E-value=9.2e-14  Score=147.81  Aligned_cols=184  Identities=15%  Similarity=0.102  Sum_probs=117.1

Q ss_pred             cccccccccEEEEEEE--CCeeE--EEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~V--AVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|++|.||+|+.  +|+.+  |||+.+......                                   ....+.+|
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------~~~~~~~E   75 (327)
T 1fvr_A           31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------DHRDFAGE   75 (327)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------CHHHHH
T ss_pred             eeeecCCCceEEEEEEccCCcccceeeeeeccccchH-----------------------------------HHHHHHHH
Confidence            6899999999999998  57754  888876421110                                   01123345


Q ss_pred             HHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHHHHH--
Q 004334          375 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGRYAV--  437 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~~lv--  437 (760)
                      ...+.++    .+++++.-..-+.......++||||++|++|.++.....               ..++...+...+.  
T Consensus        76 ~~~l~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  151 (327)
T 1fvr_A           76 LEVLCKL----GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV  151 (327)
T ss_dssp             HHHHTTC----CCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHH
T ss_pred             HHHHHhc----cCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHH
Confidence            4444433    233332222122234456799999999999998764321               1344444433332  


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004334          438 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  517 (760)
Q Consensus       438 ~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~  517 (760)
                      -..+..+|..|++|+|+||.||+++.  ++.++|+|||++..........       .......+++++....+..++..
T Consensus       152 ~~aL~~LH~~~ivH~dlkp~NIl~~~--~~~~kL~Dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~  222 (327)
T 1fvr_A          152 ARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLNYSVYTTNS  222 (327)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHCEECHHH
T ss_pred             HHHHHHHHhCCccCCCCccceEEEcC--CCeEEEcccCcCcccccccccc-------CCCCCccccChhhhccccCCchh
Confidence            23478899999999999999999986  7899999999997654332211       11234456667766655556778


Q ss_pred             ChHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFL  530 (760)
Q Consensus       518 D~~al~~~~~~~l  530 (760)
                      |++++...+.+++
T Consensus       223 Di~slG~il~ell  235 (327)
T 1fvr_A          223 DVWSYGVLLWEIV  235 (327)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHH
Confidence            9999988776654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=145.18  Aligned_cols=184  Identities=18%  Similarity=0.231  Sum_probs=101.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                  +..+.+.++..
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~~~~~~~~   76 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKE----------------------------------ENKRILMDLDV   76 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHH----------------------------------HHHHHHHHHHH
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccch----------------------------------HHHHHHHHHHH
Confidence            6899999999999999  59999999987642211                                  00001111111


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+    +...+..-+.+-.++ ......++||||+ |..+..+.......++...+...+  +-..+..+|. +|++|+|
T Consensus        77 ~~----~~~~h~~i~~~~~~~-~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~d  150 (318)
T 2dyl_A           77 VL----KSHDCPYIVQCFGTF-ITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRD  150 (318)
T ss_dssp             HH----HTTTCTTBCCEEEEE-ECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HH----HhcCCCceeeEEEEE-ecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCC
Confidence            11    122222222222222 3345679999999 555555443323334444433332  2234788898 5999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCChHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-----lG~~~~~~D~~al~~~~~~  528 (760)
                      +||.||+++.  ++.++|+|||++..+.......       ...++..++++++..     .+..++..|++++...+.+
T Consensus       151 lkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~  221 (318)
T 2dyl_A          151 VKPSNILLDE--RGQIKLCDFGISGRLVDDKAKD-------RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE  221 (318)
T ss_dssp             CCGGGEEECT--TSCEEECCCTTC---------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHH
T ss_pred             CCHHHEEECC--CCCEEEEECCCchhccCCcccc-------ccCCCccccChhhcccccccccCCccccchhhHHHHHHH
Confidence            9999999985  7899999999998775533211       123455666777763     3344566799999887766


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       222 l~~  224 (318)
T 2dyl_A          222 LAT  224 (318)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=145.18  Aligned_cols=186  Identities=15%  Similarity=0.073  Sum_probs=109.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+....-.+                                    ..+.+.+|.+
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~------------------------------------~~~~~~~e~~   60 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQ------------------------------------SVKHALREIK   60 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEECCSHH------------------------------------HHHHHHHHHH
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecCChH------------------------------------HHHHHHHHHH
Confidence            6899999999999999  4999999987653111                                    0112334555


Q ss_pred             HHHHHHHhcCCCCceeeceeee-------------ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFW-------------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~-------------e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L  441 (760)
                      .+.++    .+..-+.+-.++.             ......++||||++| +|.++...  .......+...+  +-..+
T Consensus        61 ~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~~~~qi~~~l  133 (320)
T 2i6l_A           61 IIRRL----DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVLEQ--GPLLEEHARLFMYQLLRGL  133 (320)
T ss_dssp             HHHTC----CCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCSE-EHHHHHTT--CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhc----CCCCeeEEEEeccccccccccccccccccCceeEEeeccCC-CHHHHhhc--CCccHHHHHHHHHHHHHHH
Confidence            54444    2222233333221             112456899999996 78776532  234433333222  23347


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  520 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~  520 (760)
                      ..+|..|++|+|+||.||+++. .++.++|+|||++..+++.....-   ......++..+++++.... +..++..|++
T Consensus       134 ~~lH~~~i~H~dlkp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~  209 (320)
T 2i6l_A          134 KYIHSANVLHRDLKPANLFINT-EDLVLKIGDFGLARIMDPHYSHKG---HLSEGLVTKWYRSPRLLLSPNNYTKAIDMW  209 (320)
T ss_dssp             HHHHHTTCBCCCCSGGGEEEET-TTTEEEECCCTTCBCC-----------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHH
T ss_pred             HHHHhCCEecCCCCHHHEEEcC-CCCeEEEccCccccccCCCccccc---ccccccccccccCcHHhcCcccCCchhhhH
Confidence            8899999999999999999974 367999999999988754321100   0011123444666665543 4455667999


Q ss_pred             HHHHHHHHHHH
Q 004334          521 AVRRTAQFFLN  531 (760)
Q Consensus       521 al~~~~~~~l~  531 (760)
                      ++...+.+++.
T Consensus       210 slG~il~el~~  220 (320)
T 2i6l_A          210 AAGCIFAEMLT  220 (320)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            99887766653

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.46  E-value=9.4e-14  Score=151.69  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             eEEEEeecCCCchhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          404 QILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       404 ~vLVME~ieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                      .++||||++| +|.+....   ....++...+...+  +-..+..+|..|++|+|+||.||+++. .++.++|+|||++.
T Consensus       113 ~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~-~~~~~kl~Dfg~a~  190 (383)
T 3eb0_A          113 LNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNS-KDNTLKLCDFGSAK  190 (383)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEET-TTTEEEECCCTTCE
T ss_pred             EEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcC-CCCcEEEEECCCCc
Confidence            5799999997 66554321   12223333332222  233478899999999999999999973 37899999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHH
Q 004334          479 SISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       479 ~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      .+.+.....       ...++..++++++... ...+...|++++.-.+.+++.
T Consensus       191 ~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          191 KLIPSEPSV-------AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             ECCTTSCCC-------CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCc-------CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh
Confidence            775543210       1123555677776643 235667899999987776653

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.46  E-value=1.2e-13  Score=154.12  Aligned_cols=185  Identities=16%  Similarity=0.102  Sum_probs=115.2

Q ss_pred             ccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      .+.||.|++|.||.+.. +|+.||||+..++..+                                       .+.+|.+
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~---------------------------------------~~~~E~~   60 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCD---------------------------------------IALMEIK   60 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHH---------------------------------------HHHHHHH
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHH---------------------------------------HHHHHHH
Confidence            46899999999976655 8999999987653211                                       1233444


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCCCchhhhhhhhhcCC---------CHHHHHHHHHHHHHHHHH
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGV---------DRKRLGRYAVESYLEQIL  445 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG~~L~d~~~l~~~g~---------d~~~la~~lv~~~L~qI~  445 (760)
                      .+.++.    ++++|  ++++.  ......+|||||++| +|.++........         ....++..++ ..+..+|
T Consensus        61 ~l~~l~----~HpnI--v~~~~~~~~~~~~~lv~E~~~g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~-~aL~~LH  132 (434)
T 2rio_A           61 LLTESD----DHPNV--IRYYCSETTDRFLYIALELCNL-NLQDLVESKNVSDENLKLQKEYNPISLLRQIA-SGVAHLH  132 (434)
T ss_dssp             HHHHHT----TSTTB--CCEEEEEECSSEEEEEECCCSE-EHHHHHHTC------------CCHHHHHHHHH-HHHHHHH
T ss_pred             HHHhcc----CCCCc--CeEEEEEecCCeEEEEEecCCC-CHHHHHhccCCCchhhhhccchhHHHHHHHHH-HHHHHHH
Confidence            444331    23332  23332  334556999999986 8888764322111         1122444333 3478899


Q ss_pred             hCCccccCCCCCcEEEecc-----------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----
Q 004334          446 SHGFFHADPHPGNIAVDDV-----------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----  510 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~-----------~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l----  510 (760)
                      ..|++|+|+||.||+++..           .++.++|+|||++..++........  ......+++.++++++..-    
T Consensus       133 ~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~  210 (434)
T 2rio_A          133 SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRT--NLNNPSGTSGWRAPELLEESNNL  210 (434)
T ss_dssp             HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC----------------CCTTSCHHHHSCCCTT
T ss_pred             HCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCcccee--eecCCCCCCCccCHHHhcccccc
Confidence            9999999999999999741           2358999999999988764321110  1112346777888888854    


Q ss_pred             ---CCCCCCCChHHHHHHHHHHHH
Q 004334          511 ---GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       511 ---G~~~~~~D~~al~~~~~~~l~  531 (760)
                         +..++..|+++++-.+.+++.
T Consensus       211 ~~~~~~~~~~DiwSlG~il~ellt  234 (434)
T 2rio_A          211 QTKRRLTRSIDIFSMGCVFYYILS  234 (434)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccCcchhhhhHhHHHHHHHHHh
Confidence               445667899999987776653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.45  E-value=4.1e-13  Score=141.18  Aligned_cols=148  Identities=13%  Similarity=0.128  Sum_probs=97.9

Q ss_pred             hhhcccCc--cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          291 DVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       291 ~iF~~fd~--~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      +++..|..  +.||.|++|.||+|+.  +|+.||||+.+..  ..                                   
T Consensus        14 ~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~-----------------------------------   56 (299)
T 3m2w_A           14 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--PK-----------------------------------   56 (299)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--HH-----------------------------------
T ss_pred             ccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc--HH-----------------------------------
Confidence            44454433  5799999999999998  6999999987541  01                                   


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHH--HHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESY  440 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~  440 (760)
                          ..+|...+.+.   ..+..-+.+-.++...   ....++||||++|++|.++..... ..++...+...+.  -..
T Consensus        57 ----~~~e~~~~~~~---~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~  129 (299)
T 3m2w_A           57 ----ARREVELHWRA---SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA  129 (299)
T ss_dssp             ----HHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHh---ccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence                12233222222   1222223333333321   344699999999999998764332 2345444433332  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccC-CCcEEEEeecceeccCh
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISP  482 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFG~v~~l~~  482 (760)
                      +..+|..|++|+|+||.||+++... ++.++|+|||++..+..
T Consensus       130 l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A          130 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             HHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            7889999999999999999998422 57899999999987764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.45  E-value=9.2e-14  Score=152.88  Aligned_cols=198  Identities=14%  Similarity=0.137  Sum_probs=114.9

Q ss_pred             CChhhhhcccCccccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHH
Q 004334          287 APLDDVFERFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (760)
Q Consensus       287 ~~~~~iF~~fd~~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~  362 (760)
                      ..+.+.|. +....||.|++|.||+|+.    +|+.||||+....-..                                
T Consensus        16 ~~~~~~y~-~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~--------------------------------   62 (405)
T 3rgf_A           16 ERVEDLFE-YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS--------------------------------   62 (405)
T ss_dssp             CCHHHHEE-CSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC--------------------------------
T ss_pred             hhhhhhhh-hcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC--------------------------------
Confidence            45666664 4456899999999999996    3789999987542100                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec-cCCCeEEEEeecCCCchhhhhhhhh--------cCCCHHHHH
Q 004334          363 IYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDE--------LGVDRKRLG  433 (760)
Q Consensus       363 i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-~st~~vLVME~ieG~~L~d~~~l~~--------~g~d~~~la  433 (760)
                            ..+.+|+..+.++    .+..-+.+-.++.. .....+|||||++| .+.++.....        ..++...+.
T Consensus        63 ------~~~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~  131 (405)
T 3rgf_A           63 ------MSACREIALLREL----KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVK  131 (405)
T ss_dssp             ------HHHHHHHHHHHHC----CCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHH
T ss_pred             ------HHHHHHHHHHHhc----CCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHH
Confidence                  1123455555554    23333444444432 34567999999987 4555432211        013333332


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEec--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004334          434 RYA--VESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  509 (760)
Q Consensus       434 ~~l--v~~~L~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~  509 (760)
                      ..+  +-..+..+|..|++|+|+||+|||+..  ..++.++|+|||++..+........   ...-..+++.+++++++.
T Consensus       132 ~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~  208 (405)
T 3rgf_A          132 SLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLA---DLDPVVVTFWYRAPELLL  208 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC-------------------CCCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccc---cCCCceecCcccCchhhc
Confidence            222  223478899999999999999999942  1368999999999988764322110   011123566778888775


Q ss_pred             c-CCCCCCCChHHHHHHHHHHHH
Q 004334          510 M-GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       510 l-G~~~~~~D~~al~~~~~~~l~  531 (760)
                      - +..+...|++++.-.+.+++.
T Consensus       209 ~~~~~~~~~DiwSlG~il~ell~  231 (405)
T 3rgf_A          209 GARHYTKAIDIWAIGCIFAELLT  231 (405)
T ss_dssp             TCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhhhHHHHHHHHHHHh
Confidence            4 335667899999988777664

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.44  E-value=8.7e-14  Score=145.07  Aligned_cols=184  Identities=13%  Similarity=0.021  Sum_probs=118.4

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ..||.|++|.||+|..  ++..||+|+........                                  +-...+.+|+.
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~----------------------------------~~~~~~~~e~~   77 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK----------------------------------SERQRFKEEAE   77 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHHHHHHHHH
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCH----------------------------------HHHHHHHHHHH
Confidence            4699999999999998  58899999876521110                                  11123445555


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC--c
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG--F  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G--f  449 (760)
                      .+.++    .+..-+.+-.++...   ....++||||++|++|.++.... ...+...+...+  +-..+..+|..|  +
T Consensus        78 ~l~~l----~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~~~i  152 (290)
T 1t4h_A           78 MLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTRTPPI  152 (290)
T ss_dssp             HHTTC----CCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHhC----CCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            55444    222223333333222   12369999999999999876432 234444333322  233478899999  9


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.||+++. .++.++|+|||++..........        ..+++.++++++.. +..++..|++++...+.++
T Consensus       153 ~H~dikp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l  222 (290)
T 1t4h_A          153 IHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAKA--------VIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEM  222 (290)
T ss_dssp             CCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBEE--------SCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHEEEEC-CCCCEEEeeCCCccccccccccc--------ccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHH
Confidence            99999999999973 37899999999987655432211        12445556666554 4456778999998877666


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       223 ~~  224 (290)
T 1t4h_A          223 AT  224 (290)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.44  E-value=9.1e-14  Score=154.30  Aligned_cols=191  Identities=12%  Similarity=0.093  Sum_probs=114.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+..+.....                    ...   .     -.+....+.+|+.
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~--------------------~~~---~-----~~~~~~~~~~E~~  192 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAI--------------------GSA---R-----EADPALNVETEIE  192 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTT--------------------C----------------CCHHHHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcc--------------------ccc---c-----cchhHHHHHHHHH
Confidence            6899999999999998  58999999976532110                    000   0     0001112456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+-.++  .....++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|+
T Consensus       193 ~l~~l----~hpniv~l~~~~--~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDl  265 (419)
T 3i6u_A          193 ILKKL----NHPCIIKIKNFF--DAEDYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHENGIIHRDL  265 (419)
T ss_dssp             HHHHC----CCTTBCCCCEEE--ESSEEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHHhC----CCCCEeeEEEEE--ecCceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCC
Confidence            66665    232233333333  23456999999999999876532 2234433333222  223478899999999999


Q ss_pred             CCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++.. .++.++|+|||++..++.....       ....+++.++++++..   .+..++..|++++...+.+++
T Consensus       266 kp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~ll  338 (419)
T 3i6u_A          266 KPENVLLSSQEEDCLIKITDFGHSKILGETSLM-------RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL  338 (419)
T ss_dssp             CGGGEEESSSSSSCCEEECCSSTTTSCC------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHH
T ss_pred             ChHhEEEecCCCcceEEEeecccceecCCCccc-------cccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHH
Confidence            9999999741 1346999999999988654321       1122455566666542   123344568888887776665


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       339 t  339 (419)
T 3i6u_A          339 S  339 (419)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.43  E-value=3.4e-13  Score=144.75  Aligned_cols=189  Identities=16%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             cccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ..|. .+.||.|++|.||+|+.  +|+.||||+...+....                          .           .
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------~-----------~   65 (360)
T 3e3p_A           23 DRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFR--------------------------N-----------R   65 (360)
T ss_dssp             TTEEEC----------CEEEEETTTCCEEEEEEEECCTTCC--------------------------C-----------H
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcccc--------------------------H-----------H
Confidence            3443 36899999999999999  59999999875431110                          0           0


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCC------CeEEEEeecCCCchhhhhhh--hhcCCCHHHHHHHH--HHHH
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYA--VESY  440 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st------~~vLVME~ieG~~L~d~~~l--~~~g~d~~~la~~l--v~~~  440 (760)
                      ..+|.+.+..+    .+..-+.+-.++.....      ..++||||++|.....+...  .....+...+...+  +...
T Consensus        66 ~~~~~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  141 (360)
T 3e3p_A           66 ELQIMQDLAVL----HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRS  141 (360)
T ss_dssp             HHHHHHHHHHH----CCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Confidence            11222223322    23223333333322211      16899999998644333221  12223333332222  2234


Q ss_pred             HHHHH--hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCC
Q 004334          441 LEQIL--SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTG  517 (760)
Q Consensus       441 L~qI~--~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~  517 (760)
                      +..+|  ..|++|+|+||.||+++. .++.++|+|||++..++.....       ....++..++++++..- ...++..
T Consensus       142 l~~lH~~~~~ivH~Dlkp~NIll~~-~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~  213 (360)
T 3e3p_A          142 IGCLHLPSVNVCHRDIKPHNVLVNE-ADGTLKLCDFGSAKKLSPSEPN-------VAYICSRYYRAPELIFGNQHYTTAV  213 (360)
T ss_dssp             HHHHTSTTTCCBCSCCCGGGEEEET-TTTEEEECCCTTCBCCCTTSCC-------CSTTSCGGGCCHHHHTTCSSCCTHH
T ss_pred             HHHHhCCCCCeecCcCCHHHEEEeC-CCCcEEEeeCCCceecCCCCCc-------ccccCCcceeCHHHHcCCCCCCcHH
Confidence            67788  999999999999999984 3789999999999887654321       11235667788887643 3356778


Q ss_pred             ChHHHHHHHHHHHH
Q 004334          518 DTTAVRRTAQFFLN  531 (760)
Q Consensus       518 D~~al~~~~~~~l~  531 (760)
                      |++++...+.+++.
T Consensus       214 Di~slG~il~ell~  227 (360)
T 3e3p_A          214 DIWSVGCIFAEMML  227 (360)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999988776653

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.43  E-value=2.2e-13  Score=142.03  Aligned_cols=185  Identities=17%  Similarity=0.159  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                          .+.        ..+.+|++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~--------------------------~~~--------~~~~~e~~   73 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KDT--------STILREVE   73 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS--------------------------SCH--------HHHHHHHH
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch--------------------------HHH--------HHHHHHHH
Confidence            6899999999999999  59999999976532110                          011        12344555


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-+.+..++ ......+++|||++|.+|.+.... ...++...+...+.  -..+..+|..|++|+|+
T Consensus        74 ~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl  147 (287)
T 2wei_A           74 LLKKL----DHPNIMKLFEIL-EDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGITYMHKHNIVHRDL  147 (287)
T ss_dssp             HHHTC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHHhc----cCCCccEEEEEE-eCCCeEEEEEEccCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCC
Confidence            55544    222222333322 334567999999999999876432 22344444433322  23478899999999999


Q ss_pred             CCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|.||+++.. .++.++|+|||++..+.......-       ..++..++++++.. |..++..|++++...+.+++.
T Consensus       148 ~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~  217 (287)
T 2wei_A          148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------RIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLS  217 (287)
T ss_dssp             CGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSC-------HHHHHTTCCHHHHT-TCCCTHHHHHHHHHHHHHHHH
T ss_pred             ChhhEEEecCCCcccEEEeccCcceeecCCCcccc-------ccCcccccChHHhc-CCCCCchhhHhHHHHHHHHHh
Confidence            9999999752 134799999999887654321100       01233445555554 345667799999877766543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=143.79  Aligned_cols=190  Identities=15%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+.+......                 .               .+....+.+|+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-----------------~---------------~~~~~~~~~E~   57 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRR-----------------I---------------PNGEANVKKEI   57 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHH-----------------S---------------TTHHHHHHHHH
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccc-----------------c---------------chhHHHHHHHH
Confidence            37899999999999999  58999999876521000                 0               01112345566


Q ss_pred             HHHHHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhh-hhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~-l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      ..+.++    .+..-+.+-.++. +.....++||||++|. +.++.. .....++...+...+  +-..+..+|..|++|
T Consensus        58 ~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H  132 (305)
T 2wtk_C           58 QLLRRL----RHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVH  132 (305)
T ss_dssp             HHHTTC----CCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHhc----CCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeee
Confidence            555544    2333333334332 2234679999999987 444332 223334444433332  233478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCChHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~--~~~~~D~~al~~~~~~~  529 (760)
                      +|+||.||+++.  ++.++|+|||++..+.+......    .....++..++++++.....  .+...|++++...+.++
T Consensus       133 ~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l  206 (305)
T 2wtk_C          133 KDIKPGNLLLTT--GGTLKISALGVAEALHPFAADDT----CRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNI  206 (305)
T ss_dssp             SCCSGGGEEECT--TCCEEECCCTTCEECCTTCSSCE----ECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHH
T ss_pred             cCCCcccEEEcC--CCcEEeeccccccccCccccccc----cccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHH
Confidence            999999999985  78999999999987754211100    01123566777787765322  13457888888776665


Q ss_pred             H
Q 004334          530 L  530 (760)
Q Consensus       530 l  530 (760)
                      +
T Consensus       207 ~  207 (305)
T 2wtk_C          207 T  207 (305)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.43  E-value=2.2e-13  Score=151.20  Aligned_cols=181  Identities=19%  Similarity=0.194  Sum_probs=114.2

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|++  +|+.||||+...+....                                        .+|+
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------~~E~   98 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK----------------------------------------NREL   98 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSC----------------------------------------CHHH
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhH----------------------------------------HHHH
Confidence            36899999999999999  59999999876531100                                        1233


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccC---C--CeEEEEeecCCCchhhhhh-h--hhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYT---T--PQILTMEYVPGIKINRIQS-L--DELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~s---t--~~vLVME~ieG~~L~d~~~-l--~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      +.+.++    .+..-+.+..++....   .  ..+|||||++|. +.++.. .  ....++...+...+  +-..+..+|
T Consensus        99 ~il~~l----~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  173 (420)
T 1j1b_A           99 QIMRKL----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH  173 (420)
T ss_dssp             HHHHTC----CCTTBCCEEEEEEEEETTTTEEEEEEEEECCCEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHc----CCCCccceeeEEeccCCCCcceeEEeehhccccc-HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            333333    2333334433332211   1  146899999984 433321 1  12223333332222  223478899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  524 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~  524 (760)
                      ..|++|+|+||.|||++. +++.++|+|||++..+......       .-..++..+++++++.- ...+...|++++.-
T Consensus       174 ~~~ivHrDlkp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~  245 (420)
T 1j1b_A          174 SFGICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPN-------VSYICSRYYRAPELIFGATDYTSSIDVWSAGC  245 (420)
T ss_dssp             TTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred             HCCccccCCChhhEEEeC-CCCeEEeccchhhhhcccCCCc-------eeeeeCCCcCCHHHHcCCCCCCchhhhHHHHH
Confidence            999999999999999985 3467899999999887543221       01234666778887643 24566789999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       246 il~ell~  252 (420)
T 1j1b_A          246 VLAELLL  252 (420)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8777654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.42  E-value=1.8e-13  Score=145.62  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=121.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.......              ..        ..        ...+.+|+.
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~--------------~~--------~~--------~~~~~~E~~   98 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWG--------------EL--------PN--------GTRVPMEVV   98 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEE--------------EC--------TT--------CCEEEHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhh--------------hh--------hh--------hhHHHHHHH
Confidence            6899999999999998  6999999998663211100              00        00        001223555


Q ss_pred             HHHHHHHhcCCCCceeeceeee--ccCCCeEEEEeecCC-CchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~ieG-~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++..   .+++  +++++.  ......+++|||+++ .+|.++.... ..++...+...+  +-..+..+|..|++|
T Consensus        99 ~l~~l~~---~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~ivH  172 (320)
T 3a99_A           99 LLKKVSS---GFSG--VIRLLDWFERPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCHNCGVLH  172 (320)
T ss_dssp             HHHHHCS---SSCS--BCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhhcc---CCCC--ceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCcEe
Confidence            5555532   1222  233332  334567999999986 8888865422 234443333222  234478899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l  530 (760)
                      +|++|.||+++. +++.++|+|||++..+......        -..++..++++++...+.. ++..|++++...+.+++
T Consensus       173 ~Dlkp~NIll~~-~~~~~kL~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~  243 (320)
T 3a99_A          173 RDIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMV  243 (320)
T ss_dssp             CCCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEeC-CCCCEEEeeCcccccccccccc--------CCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHH
Confidence            999999999983 3789999999999887654211        1235667778887765443 45569999888776655


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       244 ~  244 (320)
T 3a99_A          244 C  244 (320)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.5e-13  Score=144.84  Aligned_cols=191  Identities=13%  Similarity=0.026  Sum_probs=120.1

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .+.||.|++|.||+|+.  +|+.||||+.+........                            ..  .-...+.+|.
T Consensus        36 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~----------------------------~~--~~~~~~~~e~   85 (312)
T 2iwi_A           36 GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWS----------------------------PL--SDSVTCPLEV   85 (312)
T ss_dssp             EEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------------------------------------CCCCHHH
T ss_pred             eeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccc----------------------------cc--hhhHHHHHHH
Confidence            36899999999999998  6899999998653211100                            00  0001123456


Q ss_pred             HHHHHHHHhcCCCCceeeceeee--ccCCCeEEEEee-cCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEY-VPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~--e~st~~vLVME~-ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      ..+.++.....+.   .+++++.  ......+++||| ++|.+|.++.... ..++...+...+  +-..+..+|..|++
T Consensus        86 ~~l~~l~~~~~h~---~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~  161 (312)
T 2iwi_A           86 ALLWKVGAGGGHP---GVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHSRGVV  161 (312)
T ss_dssp             HHHHHHHSSCCCS---SBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             HHHHhhcccCCCC---CeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            6666664332232   2333333  234567999999 8999999876432 224444333322  22347889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~-~~~D~~al~~~~~~~  529 (760)
                      |+|+||.||+++. .++.++|+|||++..+......        ...++..++++++...+... ...|++++...+.++
T Consensus       162 H~dlkp~Nil~~~-~~~~~kl~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l  232 (312)
T 2iwi_A          162 HRDIKDENILIDL-RRGCAKLIDFGSGALLHDEPYT--------DFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDM  232 (312)
T ss_dssp             CCCCSGGGEEEET-TTTEEEECCCSSCEECCSSCBC--------CCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred             ecCCChhhEEEeC-CCCeEEEEEcchhhhcccCccc--------ccCCcccccCceeeecCCCCCccchHHHHHHHHHHH
Confidence            9999999999983 3789999999999887654211        12355666777766544432 357888888777665


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       233 ~~  234 (312)
T 2iwi_A          233 VC  234 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.41  E-value=2.2e-13  Score=152.21  Aligned_cols=185  Identities=14%  Similarity=0.097  Sum_probs=111.7

Q ss_pred             cccccccccEE-EEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQV-HRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQV-hrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|+| |++..+|+.||||+..+.......                                       +|.+.
T Consensus        30 ~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~---------------------------------------~E~~~   70 (432)
T 3p23_A           30 DVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFAD---------------------------------------REVQL   70 (432)
T ss_dssp             EEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECH---------------------------------------HHHHH
T ss_pred             CeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHH---------------------------------------HHHHH
Confidence            68999999995 444458999999998775333222                                       23333


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcC---CCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---VDRKRLGRYAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g---~d~~~la~~lv~~~L~qI~~~GffHaDp  454 (760)
                      +.++    .++++|.-..-+.......+|||||++| +|.++.......   .....++..++ ..+..+|..|++|+|+
T Consensus        71 l~~l----~~HpnIv~l~~~~~~~~~~~lv~E~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~-~aL~~LH~~~ivHrDl  144 (432)
T 3p23_A           71 LRES----DEHPNVIRYFCTEKDRQFQYIAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTT-SGLAHLHSLNIVHRDL  144 (432)
T ss_dssp             HHHS----CCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHSSSCCCCSSCHHHHHHHHH-HHHHHHHHTTCCCCCC
T ss_pred             HHhc----cCCCCcCeEEEEEecCCEEEEEEECCCC-CHHHHHHhcCCCccchhHHHHHHHHH-HHHHHHHHCcCEeCCC
Confidence            3222    1233322111122334556999999987 777765433221   23344444444 4588899999999999


Q ss_pred             CCCcEEEecc---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCChHHHHHHHHH
Q 004334          455 HPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       455 HPGNILV~~~---~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l---G~~~~~~D~~al~~~~~~  528 (760)
                      ||+||+++..   ...+++|+|||++..+....... ..  .....+++.+++++++.-   +..+...|+++++-.+.+
T Consensus       145 Kp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~-~~--~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~e  221 (432)
T 3p23_A          145 KPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSF-SR--RSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYY  221 (432)
T ss_dssp             STTSEEECCCBTTTBCCEEECCTTEEECC---------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHH
T ss_pred             CHHHEEEecCCCCCceeEEEecccceeeccCCCcce-ee--ccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHH
Confidence            9999999531   12368899999999886542211 00  112346777788887652   233446799999887766


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       222 llt  224 (432)
T 3p23_A          222 VIS  224 (432)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.37  E-value=7.6e-13  Score=145.57  Aligned_cols=181  Identities=19%  Similarity=0.193  Sum_probs=114.0

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|++|.||+|++ .+..||||.....-...                                        .+|.+.
T Consensus        46 ~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~----------------------------------------~~E~~i   85 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK----------------------------------------NRELQI   85 (394)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC----------------------------------------CHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH----------------------------------------HHHHHH
Confidence            6899999999999999 56668888765421100                                        123333


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCC-----CeEEEEeecCCCchhhhhhhh--hcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st-----~~vLVME~ieG~~L~d~~~l~--~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      +..+    .+..-+.+-.++.....     -.++||||++|..+..+....  ...++...+...+  +-..+..+|..|
T Consensus        86 l~~l----~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~  161 (394)
T 4e7w_A           86 MRIV----KHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG  161 (394)
T ss_dssp             HHTC----CCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhC----CCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            3333    23333334333322211     157999999986554433221  1223333322222  223478899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~  527 (760)
                      ++|+|+||.||+++. .++.++|+|||++..+.......       -..++..+++++++.- ...+...|++++.-.+.
T Consensus       162 ivHrDlkp~Nill~~-~~~~~kL~DFG~a~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~  233 (394)
T 4e7w_A          162 ICHRDIKPQNLLLDP-PSGVLKLIDFGSAKILIAGEPNV-------SYICSRYYRAPELIFGATNYTTNIDIWSTGCVMA  233 (394)
T ss_dssp             EECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCCC-------SSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHEEEcC-CCCcEEEeeCCCcccccCCCCCc-------ccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999983 37899999999998775432210       1234666788887643 23566789999998877


Q ss_pred             HHHH
Q 004334          528 FFLN  531 (760)
Q Consensus       528 ~~l~  531 (760)
                      +++.
T Consensus       234 ell~  237 (394)
T 4e7w_A          234 ELMQ  237 (394)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.35  E-value=2e-13  Score=143.92  Aligned_cols=188  Identities=14%  Similarity=0.138  Sum_probs=110.0

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+..+ .||||+.+......                    .      ...        .+.+|+..+
T Consensus        39 ~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~--------------------~------~~~--------~~~~e~~~l   83 (319)
T 2y4i_B           39 ELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNE--------------------D------QLK--------AFKREVMAY   83 (319)
T ss_dssp             CBCCCSSSSEEEEEEESS-SEEEEECCCCSCCC--------------------C------CCC--------CCCTTGGGG
T ss_pred             eEeccCCceEEEEEEEcC-eEEEEEeecCCCCH--------------------H------HHH--------HHHHHHHHH
Confidence            689999999999999865 49999876532110                    0      000        011222222


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHP  456 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpHP  456 (760)
                      .+    +.+..-+.+-.++ ......+++|||++|.+|.++.......++...+...+  +-..+..+|..|++|+|+||
T Consensus        84 ~~----l~h~~iv~~~~~~-~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp  158 (319)
T 2y4i_B           84 RQ----TRHENVVLFMGAC-MSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKS  158 (319)
T ss_dssp             TT----CCCTTBCCCCEEE-ECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCS
T ss_pred             hc----CCCCCEeEEEEEE-ecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCh
Confidence            22    2222223333332 33456799999999999998765433234444333332  23347889999999999999


Q ss_pred             CcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---------CCCCCCCChHHHHHHHH
Q 004334          457 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---------GVLVPTGDTTAVRRTAQ  527 (760)
Q Consensus       457 GNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l---------G~~~~~~D~~al~~~~~  527 (760)
                      .||+++   ++.++|+|||++..........- ........++..++++++...         +..++..|++++...+.
T Consensus       159 ~NIl~~---~~~~~l~Dfg~~~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~  234 (319)
T 2y4i_B          159 KNVFYD---NGKVVITDFGLFSISGVLQAGRR-EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWY  234 (319)
T ss_dssp             TTEEEC-----CCEECCCSCCC-----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHH
T ss_pred             hhEEEe---CCCEEEeecCCcccccccccccc-ccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHH
Confidence            999996   57999999999776532211100 000011124456677777653         22345578898887776


Q ss_pred             HHH
Q 004334          528 FFL  530 (760)
Q Consensus       528 ~~l  530 (760)
                      +++
T Consensus       235 el~  237 (319)
T 2y4i_B          235 ELH  237 (319)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.35  E-value=3e-13  Score=158.98  Aligned_cols=191  Identities=17%  Similarity=0.146  Sum_probs=124.4

Q ss_pred             hcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       293 F~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +..|. .+.||.|++|.||+|+.  +|+.||||+.++.....                                   ...
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~-----------------------------------~~~   57 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPK-----------------------------------NRE   57 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHH-----------------------------------HHH
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHH-----------------------------------HHH
Confidence            34454 36899999999999998  59999999877642211                                   112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeec-----cCCCeEEEEeecCCCchhhhhhhhhc--CCCHH---HHHHHHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDEL--GVDRK---RLGRYAVES  439 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-----~st~~vLVME~ieG~~L~d~~~l~~~--g~d~~---~la~~lv~~  439 (760)
                      .+.+|++.+.++.    +..-+.+..++..     .....++||||++|++|.++......  +++..   .++.. +-.
T Consensus        58 ~~~~Ei~iL~~L~----HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~Q-Ll~  132 (676)
T 3qa8_A           58 RWCLEIQIMKKLN----HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD-ISS  132 (676)
T ss_dssp             HHHHHHHHHHHCC----BTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHhCC----CCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHH-HHH
Confidence            3455666666652    2222223222211     14456999999999999987643221  23322   33333 234


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeccCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          440 YLEQILSHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       440 ~L~qI~~~GffHaDpHPGNILV~~~~~g---~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      .+..+|..|++|+|+||+||+++.  ++   .++|+|||++..++.....       ....++..++++++...+..++.
T Consensus       133 aL~yLHs~gIVHrDLKP~NILl~~--~g~~~~vKL~DFG~a~~~~~~~~~-------~~~~gt~~Y~APE~l~~~~~s~k  203 (676)
T 3qa8_A          133 ALRYLHENRIIHRDLKPENIVLQP--GPQRLIHKIIDLGYAKELDQGELC-------TEFVGTLQYLAPELLEQKKYTVT  203 (676)
T ss_dssp             HHHHHHHTTBCCCCCCSTTEEEEC--CSSSCEEEECSCCCCCBTTSCCCC-------CCCCSCCTTCSSCSSCCSCCSTT
T ss_pred             HHHHHHHCCCccCCCCHHHeEeec--CCCceeEEEccccccccccccccc-------ccccCCcccCChHHhccCCCCch
Confidence            488899999999999999999985  33   3899999999887654211       11234556666666665666778


Q ss_pred             CChHHHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFLNS  532 (760)
Q Consensus       517 ~D~~al~~~~~~~l~~  532 (760)
                      .|+++++..+.+++..
T Consensus       204 sDIwSLGviLyeLltG  219 (676)
T 3qa8_A          204 VDYWSFGTLAFECITG  219 (676)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHHHC
Confidence            8999999888777643

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.33  E-value=2.9e-13  Score=149.92  Aligned_cols=116  Identities=9%  Similarity=0.039  Sum_probs=74.8

Q ss_pred             CeEEEEeecCCCchhhhhhhh-h-----cCCCHHHHHH--HHHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEee
Q 004334          403 PQILTMEYVPGIKINRIQSLD-E-----LGVDRKRLGR--YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF  474 (760)
Q Consensus       403 ~~vLVME~ieG~~L~d~~~l~-~-----~g~d~~~la~--~lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDF  474 (760)
                      ..+++|++. +.+|.++...- .     ..++......  ..+-..+..+|..|++|+|+||.|||++.  ++.++|+||
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~--~~~~kL~DF  255 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGF  255 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCG
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEec--CCeEEEEec
Confidence            346777765 56777765311 0     0011111111  12233478899999999999999999986  788999999


Q ss_pred             cceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----------CCCCCCCChHHHHHHHHHHHH
Q 004334          475 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----------GVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       475 G~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l----------G~~~~~~D~~al~~~~~~~l~  531 (760)
                      |++...+...         ....+ +.+++++++..          ...++..|++++.-.+.+++.
T Consensus       256 G~a~~~~~~~---------~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ellt  312 (413)
T 3dzo_A          256 EHLVRDGASA---------VSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC  312 (413)
T ss_dssp             GGCEETTEEE---------CCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHH
T ss_pred             cceeecCCcc---------ccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHH
Confidence            9998776541         11234 66777777732          223446799999987776654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.24  E-value=5.1e-11  Score=121.09  Aligned_cols=143  Identities=20%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             ChhhhhcccCccccc-cccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIA-AASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIa-saSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      .+.+.+..++.+|++ .|+.++||+... +|+.++||+.++....                                   
T Consensus        14 ~l~~~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~-----------------------------------   58 (264)
T 1nd4_A           14 AWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALN-----------------------------------   58 (264)
T ss_dssp             GGTTTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTS-----------------------------------
T ss_pred             HHHHhcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccch-----------------------------------
Confidence            344555566667886 667799999987 5889999997663111                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccC--CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQ  443 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s--t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~q  443 (760)
                          .+..|++.++.+++.     .+.+|+++....  +..+++|||++|.++. +..     .+...++..+. .++.+
T Consensus        59 ----~~~~E~~~l~~l~~~-----~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-~~~-----~~~~~~~~~l~-~~l~~  122 (264)
T 1nd4_A           59 ----ELQDEAARLSWLATT-----GVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-SSH-----LAPAEKVSIMA-DAMRR  122 (264)
T ss_dssp             ----CHHHHHHHHHHHHTT-----TCCBCCEEEEEECSSCEEEEEECCSSEETT-TSC-----CCHHHHHHHHH-HHHHH
T ss_pred             ----hhhHHHHHHHHHHhC-----CCCCCeEEEeccCCCCCEEEEEecCCcccC-cCc-----CCHhHHHHHHH-HHHHH
Confidence                134566666666432     467888876433  3569999999999885 110     11112222111 11222


Q ss_pred             HHh----------------------------------------------------------CCccccCCCCCcEEEeccC
Q 004334          444 ILS----------------------------------------------------------HGFFHADPHPGNIAVDDVN  465 (760)
Q Consensus       444 I~~----------------------------------------------------------~GffHaDpHPGNILV~~~~  465 (760)
                      +|.                                                          .+++|+|+||+||++++  
T Consensus       123 lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~--  200 (264)
T 1nd4_A          123 LHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVEN--  200 (264)
T ss_dssp             HTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEET--
T ss_pred             HhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEEC--
Confidence            222                                                          23999999999999974  


Q ss_pred             CCcEEEEeecceeccChh
Q 004334          466 GGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       466 ~g~l~LiDFG~v~~l~~~  483 (760)
                      ++.+.++|||.++.-++.
T Consensus       201 ~~~~~liD~~~a~~g~~~  218 (264)
T 1nd4_A          201 GRFSGFIDCGRLGVADRY  218 (264)
T ss_dssp             TEEEEECCCTTCEEEETH
T ss_pred             CcEEEEEcchhcccCChH
Confidence            333459999999876654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.08  E-value=1.2e-09  Score=112.16  Aligned_cols=136  Identities=18%  Similarity=0.113  Sum_probs=91.4

Q ss_pred             ccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAE  379 (760)
Q Consensus       300 PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~  379 (760)
                      ..+.+|.++||++...|+.+++|+.+++....                                    ...+.+|++.++
T Consensus        21 ~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~------------------------------------~~~~~~E~~~l~   64 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVGENENLYLKMTDSRYKGT------------------------------------TYDVEREKDMML   64 (263)
T ss_dssp             CCSCCSSSEEEEEECSSCEEEEEEECGGGTTS------------------------------------TTCHHHHHHHHH
T ss_pred             eccCCCCCeEEEEECCCCcEEEEeCCcccCCC------------------------------------HHHHHHHHHHHH
Confidence            46778889999999888999999987632110                                    001456777777


Q ss_pred             HHHHhcCCCCceeeceeeecc--CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh-----------
Q 004334          380 LFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-----------  446 (760)
Q Consensus       380 ~f~~~~~~~~~V~VP~vy~e~--st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~-----------  446 (760)
                      .+.+      .+.+|+++...  .+..+++|||++|.++.+...   ...++..++..+. ..+..+|.           
T Consensus        65 ~l~~------~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~---~~~~~~~~~~~l~-~~l~~LH~~~~~~~~~~~~  134 (263)
T 3tm0_A           65 WLEG------KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE---DEQSPEKIIELYA-ECIRLFHSIDISDCPYTNS  134 (263)
T ss_dssp             HHTT------TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCC---TTTCHHHHHHHHH-HHHHHHHHSCCTTCSCBCC
T ss_pred             HHhc------CCCCCeEEEEEecCCceEEEEEecCCeehhhccC---CcccHHHHHHHHH-HHHHHHhCCCcccCCCcch
Confidence            7643      26788888533  345689999999999876421   0122333333332 23455554           


Q ss_pred             ------------------------------------------------CCccccCCCCCcEEEeccCCCcEEEEeeccee
Q 004334          447 ------------------------------------------------HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  478 (760)
Q Consensus       447 ------------------------------------------------~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~  478 (760)
                                                                      .+++|+|+||+||++++  ++.+.+|||+.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~--~~~~~lIDwe~a~  212 (263)
T 3tm0_A          135 LDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD--GKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEET--TEEEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEEC--CcEEEEEEchhcc
Confidence                                                            45899999999999973  3345699999988


Q ss_pred             ccChh
Q 004334          479 SISPN  483 (760)
Q Consensus       479 ~l~~~  483 (760)
                      .-++.
T Consensus       213 ~gd~~  217 (263)
T 3tm0_A          213 RADKW  217 (263)
T ss_dssp             EEEHH
T ss_pred             cCCHH
Confidence            76553

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.94  E-value=3.3e-09  Score=114.53  Aligned_cols=165  Identities=14%  Similarity=0.160  Sum_probs=101.2

Q ss_pred             CCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEec--CCchhhHHHHHHHHHHHHHHHh
Q 004334          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQ  347 (760)
Q Consensus       270 pp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqr--Pgi~~~i~~DL~iL~~la~~l~  347 (760)
                      ++++.+.+.+.+.+.++.. .   ...+.++++.|..+.||+.+..+..+++|+..  |+....                
T Consensus        19 ~~ld~~~l~~~l~~~~~~~-~---~~~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~----------------   78 (359)
T 3dxp_A           19 QRFDTEALEAWMRQHVEGF-A---GPLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLP----------------   78 (359)
T ss_dssp             -CCCHHHHHHHHHHHSTTC-C---CCCEEEECCC-CCSCEEEEECSSCEEEEECCCC-----------------------
T ss_pred             cCCCHHHHHHHHHHhCCCC-C---CCceEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCC----------------
Confidence            4567777888887776421 1   12345789999999999999877889999876  542100                


Q ss_pred             hhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCC-----eEEEEeecCCCchhhhhhh
Q 004334          348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKINRIQSL  422 (760)
Q Consensus       348 ~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~-----~vLVME~ieG~~L~d~~~l  422 (760)
                                         -...+.+|++.++.+++     ..+.+|+++......     .+++|||++|..+.+... 
T Consensus        79 -------------------~~~~~~~E~~~l~~L~~-----~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~-  133 (359)
T 3dxp_A           79 -------------------SAHAIEREYRVMDALAG-----TDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSL-  133 (359)
T ss_dssp             ----------------------CHHHHHHHHHHHTT-----SSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTC-
T ss_pred             -------------------cHHHHHHHHHHHHHhhc-----CCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCcc-
Confidence                               01124567777777643     346789998754433     789999999998853110 


Q ss_pred             hhcC-CCHHHHHHHHHHHHHHHHHh-------------------------------------------------------
Q 004334          423 DELG-VDRKRLGRYAVESYLEQILS-------------------------------------------------------  446 (760)
Q Consensus       423 ~~~g-~d~~~la~~lv~~~L~qI~~-------------------------------------------------------  446 (760)
                      .... .++..+...+. ..+..+|.                                                       
T Consensus       134 ~~l~~~~~~~~~~~l~-~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  212 (359)
T 3dxp_A          134 PGMSPAERTAIYDEMN-RVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQED  212 (359)
T ss_dssp             TTCCHHHHHHHHHHHH-HHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTT
T ss_pred             ccCCHHHHHHHHHHHH-HHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCcc
Confidence            0000 00111112111 11223332                                                       


Q ss_pred             ---CCccccCCCCCcEEEeccCCC-c-EEEEeecceeccCh
Q 004334          447 ---HGFFHADPHPGNIAVDDVNGG-R-LIFYDFGMMGSISP  482 (760)
Q Consensus       447 ---~GffHaDpHPGNILV~~~~~g-~-l~LiDFG~v~~l~~  482 (760)
                         .+++|+|+||+||++++  ++ + +.++||++++.-++
T Consensus       213 ~~~~~lvHgD~~~~Nil~~~--~~~~v~~viDwe~a~~g~p  251 (359)
T 3dxp_A          213 ADLTSIVHGDYRLDNLMFHP--TEPRVLAVLDWELSTLGHP  251 (359)
T ss_dssp             SSCCEEECSSCSGGGEEECS--SSSCEEEECCCTTCEEECH
T ss_pred             CCCceEEeCCCCCCcEEEeC--CCCcEEEEECccccccCCH
Confidence               46999999999999985  33 3 68999999886554

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.91  E-value=1.3e-08  Score=104.99  Aligned_cols=173  Identities=14%  Similarity=0.125  Sum_probs=98.8

Q ss_pred             ccCcccccccccc-EEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFDVEPIAAASLG-QVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd~~PIasaSiG-QVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .+.-+++..|.-+ .||+-..  .|..++||+..++...                                       .+
T Consensus        26 g~~~~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~---------------------------------------~~   66 (272)
T 4gkh_A           26 GYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVAN---------------------------------------DV   66 (272)
T ss_dssp             TCEEEEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHH---------------------------------------HH
T ss_pred             CCeEEEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHh---------------------------------------HH
Confidence            3444566666554 7999877  4678999998875222                                       13


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH------------
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV------------  437 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv------------  437 (760)
                      ..|++.++.++.      .+.||+|+..  .....+++|||++|.++.+......  .....+...+.            
T Consensus        67 ~~E~~~l~~l~~------~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~~--~~~~~~~~~l~~~L~~Lh~~~~~  138 (272)
T 4gkh_A           67 TDEMVRLNWLTA------FMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYP--DSGENIVDALAVFLRRLHSIPVC  138 (272)
T ss_dssp             HHHHHHHHHHTT------TSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHCG--GGHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHhcc------CCCcCeEEEEEEECCeEEEEEEeeCCccccccccCCH--HHHHHHHHHHHHHHHHhcCCCcc
Confidence            445666655532      3678998753  3456799999999998766421100  01111111100            


Q ss_pred             --------------------------------------HHHHHHHHh-------CCccccCCCCCcEEEeccCCCcEEEE
Q 004334          438 --------------------------------------ESYLEQILS-------HGFFHADPHPGNIAVDDVNGGRLIFY  472 (760)
Q Consensus       438 --------------------------------------~~~L~qI~~-------~GffHaDpHPGNILV~~~~~g~l~Li  472 (760)
                                                            ......+..       ..++|+|+||+||++++  ++.+.+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~--~~~~~vi  216 (272)
T 4gkh_A          139 NCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDE--GKLIGCI  216 (272)
T ss_dssp             GCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEET--TEEEEEC
T ss_pred             cCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEEC--CeEEEEE
Confidence                                                  011111111       13799999999999984  5556799


Q ss_pred             eecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          473 DFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       473 DFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      ||+.++.-++..  .+..++......+.+.....+...|..  ..|..
T Consensus       217 Dwe~a~~gdp~~--Dla~~~~~~~~~~~~~~~~fl~~Yg~~--~~d~~  260 (272)
T 4gkh_A          217 DVGRVGIADRYQ--DLAILWNCLGEFSPSLQKRLFQKYGID--NPDMN  260 (272)
T ss_dssp             CCTTCEEEETHH--HHHHHHHHHTTTCHHHHHHHHHHHTCS--SCCHH
T ss_pred             ECcccccCCHHH--HHHHHHHHhhhcCHHHHHHHHHHcCCC--CCCHH
Confidence            999998766542  233332223334444444444445643  33544

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.68  E-value=7.3e-08  Score=101.69  Aligned_cols=98  Identities=8%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhC
Q 004334          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID  350 (760)
Q Consensus       271 p~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~  350 (760)
                      .++.+.+++.+.+.+..     +.....++++.|....||+..   +.+++|+.+++                       
T Consensus         3 ~~~~~~l~~~l~~~~p~-----~~~~~i~~~~~G~~n~v~~v~---~~~vlR~~~~~-----------------------   51 (304)
T 3sg8_A            3 TYTFDQVEKAIEQLYPD-----FTINTIEISGEGNDCIAYEIN---RDFIFKFPKHS-----------------------   51 (304)
T ss_dssp             CCCHHHHHHHHHHHCTT-----CCCCCCCEEEECSSEEEEEST---TSEEEEEESSH-----------------------
T ss_pred             cCCHHHHHHHHHHhCCC-----ccceeeEecCCCCcceEEEEC---CEEEEEecCCc-----------------------
Confidence            35667777888776642     111234678999999998864   67999986552                       


Q ss_pred             CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCC-----CeEEEEeecCCCchhh
Q 004334          351 PKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINR  418 (760)
Q Consensus       351 p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st-----~~vLVME~ieG~~L~d  418 (760)
                                     .....+..|++.++.+..    ...+.+|+++.....     ..++||||++|.++.+
T Consensus        52 ---------------~~~~~~~~E~~~l~~l~~----~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~  105 (304)
T 3sg8_A           52 ---------------RGSTNLFNEVNILKRIHN----KLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTP  105 (304)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHTT----SSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCH
T ss_pred             ---------------chHHHHHHHHHHHHHHHh----cCCCCCCceEeecCCCCCCCcceEEEcccCCeECCc
Confidence                           011234567777776643    245778988865332     2488999999998875

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.67  E-value=4.4e-07  Score=99.37  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=63.3

Q ss_pred             CCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHh
Q 004334          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (760)
Q Consensus       270 pp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~  347 (760)
                      -+++.+.+.+.+. .+|.-...  ..++.+++|.|..++||+++.  .|+.|+||...|..+-. ..+            
T Consensus        10 ~~l~~~~v~~~l~-~~~~~~~~--~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~-~~~------------   73 (397)
T 2olc_A           10 ETLNESSAVALAV-KLGLFPSK--STLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-GES------------   73 (397)
T ss_dssp             CCCCHHHHHHHHH-HTTC-------CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC--------------------
T ss_pred             ccCCHHHHHHHHH-hcCcCCCC--CceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhccc-CCC------------
Confidence            3455555655555 44421111  124557999999999999976  47899999988753200 000            


Q ss_pred             hhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCc
Q 004334          348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  415 (760)
Q Consensus       348 ~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~  415 (760)
                        .+      ..        ...+..|++.+..+.+.    ....+|++|.......++||||++|..
T Consensus        74 --~~------~~--------~~r~~~E~~~L~~l~~~----~~~~vP~~~~~d~~~~~lvmE~l~g~~  121 (397)
T 2olc_A           74 --WP------LT--------IDRARIESSALIRQGEH----VPHLVPRVFYSDTEMAVTVMEDLSHLK  121 (397)
T ss_dssp             --CC------CC--------TTHHHHHHHHHHHHHTT----CGGGSCCEEEEETTTTEEEECCCTTSE
T ss_pred             --Cc------Cc--------HHHHHHHHHHHHHhhhh----CCCCcCeEEEEcCCccEEEEEeCCCcc
Confidence              00      00        01234566666666542    235689888655556799999999853

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.49  E-value=3.5e-07  Score=97.13  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      .++++.|...+||+.   |+.++||+.++.                                      .....+..|++.
T Consensus        24 v~~l~~G~~n~v~~v---g~~~VlR~~~~~--------------------------------------~~~~~~~~E~~~   62 (306)
T 3tdw_A           24 VESLGEGFRNYAILV---NGDWVFRFPKSQ--------------------------------------QGADELNKEIQL   62 (306)
T ss_dssp             EEEEEECSSEEEEEE---TTTEEEEEESSH--------------------------------------HHHHHHHHHHHH
T ss_pred             eeecCCCcceeEEEE---CCEEEEEecCCc--------------------------------------hHHHHHHHHHHH
Confidence            367888888899887   788999984331                                      112235677888


Q ss_pred             HHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhh
Q 004334          378 AELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINR  418 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d  418 (760)
                      +..+++.    ..+.+|+++...   .+..+++|||++|.++.+
T Consensus        63 L~~L~~~----~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           63 LPLLVGC----VKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             HHHHTTT----CSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             HHHHHhc----CCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            8777543    236788877532   344789999999998875

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=98.46  E-value=3.6e-07  Score=95.73  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCC
Q 004334          275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (760)
Q Consensus       275 ~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~  353 (760)
                      +.+.+.+.+.+|.++..      -+++|.|..++||+.++ +|+.|+||+..++....                      
T Consensus         3 ~~v~a~~~~l~G~~v~~------v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~----------------------   54 (288)
T 3f7w_A            3 NSVAARVTELTGREVAA------VAERGHSHRWHLYRVELADGTPLFVKALPDDAPAL----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHCCCEEE------EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC----------------------
T ss_pred             HHHHHHHHHhcCCCeEE------EEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch----------------------
Confidence            45677788888976543      36899999999999999 79999999876532110                      


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhh
Q 004334          354 DGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR  418 (760)
Q Consensus       354 ~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d  418 (760)
                                    ...+..|++.++.+++    ...|.+|+++..  +..+++|||+++.....
T Consensus        55 --------------~~~~~~Ea~~L~~L~~----~~~vpvP~v~~~--~~~~lv~e~l~~~~~~~   99 (288)
T 3f7w_A           55 --------------DGLFRAEALGLDWLGR----SFGSPVPQVAGW--DDRTLAMEWVDERPPTP   99 (288)
T ss_dssp             --------------TTHHHHHHHHHHHHTC----STTCCSCCEEEE--ETTEEEEECCCCCCCCH
T ss_pred             --------------hhHHHHHHHHHHHHHh----hCCCCcceEEec--cCceEEEEeecccCCCh
Confidence                          0123457777776643    335889999864  45689999999876543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.42  E-value=1.6e-06  Score=91.61  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      ..+++|+|+||+||++++  ++.+.++||+.++.-++
T Consensus       221 ~~~l~HgD~~~~Nil~~~--~~~~~lIDfe~a~~g~~  255 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGE--NEQIWVIDLDTVSFDLP  255 (346)
T ss_dssp             SCCEECSSCSTTSEEECG--GGCEEECCCTTCEECCT
T ss_pred             cCceecCCCCcccEEEeC--CCcEEEEehhhcccCCh
Confidence            468999999999999975  57899999999876554

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=98.36  E-value=1.7e-06  Score=92.69  Aligned_cols=98  Identities=17%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCC
Q 004334          273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK  352 (760)
Q Consensus       273 p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~  352 (760)
                      .++.+.+.+.+.+|.+.    .-.+.+|++.|.+.++|+...+++.++||+..++-.                       
T Consensus        20 ~~~~l~~~L~~~lg~~~----~i~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~-----------------------   72 (312)
T 3jr1_A           20 MWKSISQVLAEQFGAYY----FIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYR-----------------------   72 (312)
T ss_dssp             HHHHHHHHHHHHHSSCC----CCCEEEEECCSSSSEEEEEESSSCEEEEEEEEGGGH-----------------------
T ss_pred             cHHHHHHHHHHHhCCCc----ceeeeEEeCCccceeeeEEEECCCeEEEEeCCcccH-----------------------
Confidence            45677788888888541    112347999999999999998888999998766311                       


Q ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchh
Q 004334          353 SDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       353 ~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~  417 (760)
                                      ..+..|++.++.+++.    ..+.||+++..  ..+..+++|||++|.+++
T Consensus        73 ----------------~~~~~E~~~L~~L~~~----~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~  119 (312)
T 3jr1_A           73 ----------------SMFRAEADQLALLAKT----NSINVPLVYGIGNSQGHSFLLLEALNKSKNK  119 (312)
T ss_dssp             ----------------HHHHHHHHHHHHHHHT----TSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred             ----------------HHHHHHHHHHHHHHhh----CCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence                            1234567777777542    24789998853  335679999999998764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.30  E-value=1.8e-06  Score=92.74  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             ccc-ccccccEEEEEEEC--------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPI-AAASLGQVHRARLK--------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PI-asaSiGQVhrA~l~--------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +++ +.|....+|+....        |+.+++|+..|+-...                 ...                ..
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~-----------------~~~----------------~~   72 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVP-----------------VFP----------------TY   72 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCC-----------------SSS----------------CC
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccc-----------------cCc----------------hh
Confidence            578 88999999998875        7899999876642000                 000                00


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeeccC-----CCeEEEEeecCCCchhh
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINR  418 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s-----t~~vLVME~ieG~~L~d  418 (760)
                      .+..|++.++.+++.    ..+.+|+++....     +..+++|||++|.++.+
T Consensus        73 ~~~~E~~~l~~L~~~----~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A           73 RLDHQFEVIRLVGEL----TDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             CHHHHHHHHHHHHHH----CCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCB
T ss_pred             HHHHHHHHHHHHhhc----CCCCCCcEEEEccCCCccCCceEEEEecCCCChhh
Confidence            134566677776654    2378999886432     23589999999987653

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=98.21  E-value=5.3e-06  Score=87.64  Aligned_cols=160  Identities=9%  Similarity=0.081  Sum_probs=90.5

Q ss_pred             CCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCCc-hhhHHHHHHHHHHHHHHHhh
Q 004334          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGL-KDLFDIDLKNLRVIAEYLQK  348 (760)
Q Consensus       270 pp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi-~~~i~~DL~iL~~la~~l~~  348 (760)
                      ++++.+++.+++++ +|.  .++   .+-+|++.|...+||+...++..+++|+.+++. .+.                 
T Consensus         5 ~~~~~~~l~~~l~~-~~~--~~~---~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~~-----------------   61 (322)
T 2ppq_A            5 TDITEDELRNFLTQ-YDV--GSL---TSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKND-----------------   61 (322)
T ss_dssp             CCCCHHHHHHHHTT-BCC--CCE---EEEEEECC---EEEEEEEESSCCEEEEEECC---CCH-----------------
T ss_pred             ccCCHHHHHHHHHh-CCC--Ccc---eEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHHH-----------------
Confidence            45677777777764 553  111   134688889999999999865589999987731 111                 


Q ss_pred             hCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeecc--------CCCeEEEEeecCCCchhhh-
Q 004334          349 IDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY--------TTPQILTMEYVPGIKINRI-  419 (760)
Q Consensus       349 ~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~--------st~~vLVME~ieG~~L~d~-  419 (760)
                                            +..|...++.+++.     .+.+|+++...        .+..+++|||++|.++... 
T Consensus        62 ----------------------l~~e~~~l~~L~~~-----g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~  114 (322)
T 2ppq_A           62 ----------------------LPFFLGLMQHLAAK-----GLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRKPE  114 (322)
T ss_dssp             ----------------------HHHHHHHHHHHHHT-----TCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBCCSSCC
T ss_pred             ----------------------HHHHHHHHHHHHHC-----CCCCCcccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCC
Confidence                                  22344445555442     35678877532        2446899999999875421 


Q ss_pred             ----h-------hhhhc--CC--------CHHHHHH-----------------HHHHHHHHHHH-------hCCccccCC
Q 004334          420 ----Q-------SLDEL--GV--------DRKRLGR-----------------YAVESYLEQIL-------SHGFFHADP  454 (760)
Q Consensus       420 ----~-------~l~~~--g~--------d~~~la~-----------------~lv~~~L~qI~-------~~GffHaDp  454 (760)
                          .       .+...  ++        .......                 ..+...+..+.       ..+++|+|+
T Consensus       115 ~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl  194 (322)
T 2ppq_A          115 AKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADL  194 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCC
Confidence                0       01000  00        0000000                 00111222222       357999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccC
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSIS  481 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~  481 (760)
                      ||+||++++  ++.+.+|||+.++.-+
T Consensus       195 ~~~Nil~~~--~~~~~lIDf~~a~~g~  219 (322)
T 2ppq_A          195 FQDNVFFLG--DELSGLIDFYFACNDL  219 (322)
T ss_dssp             CGGGEEEET--TEEEEECCCTTCEEEE
T ss_pred             CccCEEEeC--CceEEEecchhccCch
Confidence            999999984  4344799999887643

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=98.14  E-value=1.2e-05  Score=86.66  Aligned_cols=54  Identities=9%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEECCeeEEEEEecCC
Q 004334          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPG  327 (760)
Q Consensus       270 pp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l~G~~VAVKVqrPg  327 (760)
                      |+++.+++.+.+.+.+|....    .+...+.|.|+...||+...++..+++|+.++.
T Consensus         4 p~l~~~~l~~~l~~~ygl~~~----~~~~l~~G~g~~N~vy~v~~~~g~~vLK~~~~~   57 (339)
T 3i1a_A            4 QPIQAQQLIELLKVHYGIDIH----TAQFIQGGADTNAFAYQADSESKSYFIKLKYGY   57 (339)
T ss_dssp             CSSCTTHHHHHHHHHHCCCCS----EEEEETTTSCSSCEEEEEECSSCEEEEEEEECS
T ss_pred             CCCCHHHHHHHHHHHcCCCcc----eeEEeeccCccccceEEEEeCCCCEEEEEecCc
Confidence            677888899999888887543    234456677779999999984339999998774

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=98.08  E-value=1.1e-05  Score=89.31  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                      ...++|+|+||+|||+++  ++ +.+|||+.+..=++.
T Consensus       231 ~~~liHGDl~~~Nil~~~--~~-~~lID~e~a~~G~p~  265 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQ--DS-TQVIDPEFSFYGPMG  265 (420)
T ss_dssp             CCEEECSCCSGGGEEECS--SC-EEECCCTTCEEECHH
T ss_pred             CCeEEecCCCCCcEEEeC--CC-CEEEeCcccccCchH
Confidence            567999999999999974  44 999999999877654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=98.04  E-value=3e-05  Score=82.03  Aligned_cols=100  Identities=17%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHhCCChhhhhcccCccccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHh
Q 004334          269 VPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (760)
Q Consensus       269 vpp~p~~~v~~iie~elG~~~~~iF~~fd~~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~  347 (760)
                      .+.++.+.+...+ +.+|.....     ..+|++ |....||+... +|+.+++|+.+|+....                
T Consensus         8 ~~~l~~~~i~~~l-~~~g~~~~~-----~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~----------------   64 (328)
T 1zyl_A            8 FQTLHPDTIMDAL-FEHGIRVDS-----GLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTA----------------   64 (328)
T ss_dssp             CCCCCHHHHHHHH-HHTTCCCCS-----CCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCH----------------
T ss_pred             CCCCCHHHHHHHH-HHcCCCCCc-----eEEeec-CcccceEEEEcCCCCEEEEEEcCCCCCCH----------------
Confidence            4556677788887 456654321     235777 88899999887 57889999988752110                


Q ss_pred             hhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeec-------cCCCeEEEEeecCCCchh
Q 004334          348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       348 ~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e-------~st~~vLVME~ieG~~L~  417 (760)
                                           ..+..|...++.+++.     .+.+|+++..       ..+..+++|||++|.++.
T Consensus        65 ---------------------~~~~~E~~~~~~L~~~-----g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~  115 (328)
T 1zyl_A           65 ---------------------DQILEEHQFALQLVND-----EVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFE  115 (328)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHT-----TCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECC
T ss_pred             ---------------------HHHHHHHHHHHHHHHc-----CCeecceeecCCcEEEEECCEEEEEEEecCCCCCC
Confidence                                 0123355555555442     3567777653       123347899999997654

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.96  E-value=2.6e-05  Score=83.00  Aligned_cols=37  Identities=22%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             CCccccCCCCCcEEEeccC--CCcEEEEeecceeccChh
Q 004334          447 HGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~--~g~l~LiDFG~v~~l~~~  483 (760)
                      .+++|+|+||+||++++..  .+.+.+|||+.+..=++.
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~~  221 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRA  221 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECTT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCCH
Confidence            4799999999999997511  157999999998876553

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.88  E-value=3.2e-05  Score=81.28  Aligned_cols=136  Identities=16%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             ccccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      -+|++.|...++|+.    +.+++|+..++....+                                     ....|+.+
T Consensus        23 i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~~-------------------------------------~r~~E~~~   61 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----GDLCLRIPGKGTEEYI-------------------------------------NRANEAVA   61 (301)
T ss_dssp             CEEEESCSSEEEEEE----TTEEEEEECC----CC-------------------------------------CHHHHHHH
T ss_pred             eeEcCCcccccccee----eeEEEECCCCCcccee-------------------------------------CHHHHHHH
Confidence            478999999999999    6799999877421110                                     01346666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeec-CCCchhhhh----------------hhhhcCC------CHH-HHH
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV-PGIKINRIQ----------------SLDELGV------DRK-RLG  433 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~i-eG~~L~d~~----------------~l~~~g~------d~~-~la  433 (760)
                      ++.+.+.     .+. |+++.......+++|||+ +|.++....                .+...+.      +.. .+.
T Consensus        62 l~~l~~~-----g~~-P~~~~~~~~~~~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~  135 (301)
T 3dxq_A           62 AREAAKA-----GVS-PEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMID  135 (301)
T ss_dssp             HHHHHHT-----TSS-CCEEEECTTTCCEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHH
T ss_pred             HHHHHHc-----CCC-CceEEEECCCCEEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence            6666542     244 888876666679999999 888775311                0111110      100 000


Q ss_pred             --------------------HHHHHHHHHHHH----hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChh
Q 004334          434 --------------------RYAVESYLEQIL----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  483 (760)
Q Consensus       434 --------------------~~lv~~~L~qI~----~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~  483 (760)
                                          ...+..+...+.    ...++|+|+||+||+..   ++++.+|||..++.-++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~HgDl~~~Nil~~---~~~~~lID~e~a~~g~~~  206 (301)
T 3dxq_A          136 DYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCENFLDT---GERMWIVDWEYSGMNDPL  206 (301)
T ss_dssp             HHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEEECSCCCGGGEEEC---SSCEEECCCTTCEEECTH
T ss_pred             HHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCEEEC---CCCEEEEecccccCCCHH
Confidence                                000111111111    13489999999999943   678999999988866553

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.79  E-value=0.00013  Score=81.25  Aligned_cols=95  Identities=18%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhCCChhhhh-cccCccccccccccEEEEEEEC---------CeeEEEEEecC-CchhhHHHHHHHHHHHHH
Q 004334          276 TAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRP-GLKDLFDIDLKNLRVIAE  344 (760)
Q Consensus       276 ~v~~iie~elG~~~~~iF-~~fd~~PIasaSiGQVhrA~l~---------G~~VAVKVqrP-gi~~~i~~DL~iL~~la~  344 (760)
                      .+.+++.+-++..|..+= ..++-++++.|-...||+....         ++.|++|+-++ +..+.             
T Consensus        55 ~a~~l~~~~l~~~w~~~~~~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~-------------  121 (429)
T 1nw1_A           55 RAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESH-------------  121 (429)
T ss_dssp             HHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHH-------------
T ss_pred             HHHHHHHHhccCCcCCCCccceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHH-------------
Confidence            345555555655555331 1234578999999999999973         47899998754 22111             


Q ss_pred             HHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchh
Q 004334          345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       345 ~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~  417 (760)
                                                +..|+..+..+.+.     .+ .|+++....  ..++|||++|.++.
T Consensus       122 --------------------------li~E~~~l~~L~~~-----g~-~P~l~~~~~--~g~v~e~l~G~~l~  160 (429)
T 1nw1_A          122 --------------------------LVAESVIFTLLSER-----HL-GPKLYGIFS--GGRLEEYIPSRPLS  160 (429)
T ss_dssp             --------------------------HHHHHHHHHHHHHT-----TS-SSCEEEEET--TEEEECCCCEEECC
T ss_pred             --------------------------HHHHHHHHHHHHhC-----CC-CCcEEEEeC--CCEEEEEeCCcccC
Confidence                                      11355555555442     13 477776443  35999999997664

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.76  E-value=0.00011  Score=79.61  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             cCccccccccccEEEEEEECC----------eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARLKG----------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l~G----------~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++.+|++.|....+|+....+          +.+++|+-.++....+                          +      
T Consensus        36 ~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~--------------------------~------   83 (369)
T 3c5i_A           36 LRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELY--------------------------N------   83 (369)
T ss_dssp             EEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTS--------------------------C------
T ss_pred             eEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcccee--------------------------c------
Confidence            345789999999999999843          7899998776432110                          0      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCch
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  416 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L  416 (760)
                           ...|++.++.+.+.     .+ +|+++...  ..+++|||++|.++
T Consensus        84 -----~~~E~~~l~~L~~~-----g~-~P~~~~~~--~~~~v~e~i~G~~l  121 (369)
T 3c5i_A           84 -----TISEFEVYKTMSKY-----KI-APQLLNTF--NGGRIEEWLYGDPL  121 (369)
T ss_dssp             -----HHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEEC
T ss_pred             -----HHHHHHHHHHHHhc-----CC-CCceEEec--CCcEEEEEecCCcC
Confidence                 13456666666542     24 78887544  35899999999765

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.54  E-value=0.00032  Score=77.16  Aligned_cols=163  Identities=20%  Similarity=0.282  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhCCChhhh-hcccCccccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHH
Q 004334          275 ETAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAE  344 (760)
Q Consensus       275 ~~v~~iie~elG~~~~~i-F~~fd~~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~  344 (760)
                      +.+..++.+-++..|..+ -..++-+++..|--.++|+....         ++.+++|+-.+....              
T Consensus        31 ~~~~~~~~~~l~~~W~~~~~~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~--------------   96 (379)
T 3feg_A           31 RRAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQG--------------   96 (379)
T ss_dssp             HHHHHHHHHHHCGGGGGCCGGGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CC--------------
T ss_pred             HHHHHHHHHHccCcCCCCCcCceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccch--------------
Confidence            344555666666566654 24566788999999999999872         478999984331100              


Q ss_pred             HHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhh--h-
Q 004334          345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ--S-  421 (760)
Q Consensus       345 ~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~--~-  421 (760)
                                             ...+.+|+++++.+.+.     .+ .|+++....+  -++|||++|..+..-.  . 
T Consensus        97 -----------------------~~~~~rE~~vl~~L~~~-----gv-~P~ll~~~~~--g~v~e~i~G~~l~~~~l~~p  145 (379)
T 3feg_A           97 -----------------------VDSLVLESVMFAILAER-----SL-GPQLYGVFPE--GRLEQYIPSRPLKTQELREP  145 (379)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHT-----TS-SCCEEEEETT--EEEEECCSEEECCGGGGGCH
T ss_pred             -----------------------HHHHHHHHHHHHHHHhc-----CC-CCeEEEEcCC--ccEEEEecCccCChhHhCCH
Confidence                                   01234677778777652     23 4888865443  4999999998775310  0 


Q ss_pred             ------------hhhc----CC--C--HHHHHHHH---------------------HH---HHHHHHH-----hCCcccc
Q 004334          422 ------------LDEL----GV--D--RKRLGRYA---------------------VE---SYLEQIL-----SHGFFHA  452 (760)
Q Consensus       422 ------------l~~~----g~--d--~~~la~~l---------------------v~---~~L~qI~-----~~GffHa  452 (760)
                                  +...    +-  .  ..++....                     +.   ..++..+     ...+.|+
T Consensus       146 ~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~  225 (379)
T 3feg_A          146 VLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHN  225 (379)
T ss_dssp             HHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCCEEEECS
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcC
Confidence                        0111    10  0  01111100                     00   0112222     1358999


Q ss_pred             CCCCCcEEEecc--CCCcEEEEeecceeccCh
Q 004334          453 DPHPGNIAVDDV--NGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       453 DpHPGNILV~~~--~~g~l~LiDFG~v~~l~~  482 (760)
                      |+|++||++++.  +++.+.+|||-.++.-++
T Consensus       226 D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~  257 (379)
T 3feg_A          226 DIQEGNILLLSEPENADSLMLVDFEYSSYNYR  257 (379)
T ss_dssp             CCCGGGEEEESCC---CCEEECCCTTCEEEEH
T ss_pred             CCCCCeEEEcCCCCccCcEEEEecccCCcCCh
Confidence            999999999852  126899999999987654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.05  E-value=0.0023  Score=72.08  Aligned_cols=77  Identities=9%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             cCccccccccccEEEEEEECC--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARLKG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l~G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      ++-++|+.|-...+|+....+  ..+++|+-.++....+.                                     ...
T Consensus       111 ~~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~id-------------------------------------R~~  153 (458)
T 2qg7_A          111 LEFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIIN-------------------------------------RER  153 (458)
T ss_dssp             EEEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSC-------------------------------------HHH
T ss_pred             eEEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcC-------------------------------------HHH
Confidence            345789999999999999854  89999997664322211                                     024


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchh
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~  417 (760)
                      |+..+..+.+     ..+ .|+++....  ..++|||++|.++.
T Consensus       154 E~~vl~~L~~-----~gl-~P~ll~~~~--~G~v~e~I~G~~l~  189 (458)
T 2qg7_A          154 EKKISCILYN-----KNI-AKKIYVFFT--NGRIEEFMDGYALS  189 (458)
T ss_dssp             HHHHHHHHTT-----SSS-BCCEEEEET--TEEEEECCCSEECC
T ss_pred             HHHHHHHHHh-----cCC-CCCEEEEeC--CeEEEEeeCCccCC
Confidence            5556665543     123 578876543  34699999997664

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.69  E-value=0.011  Score=65.78  Aligned_cols=98  Identities=12%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhCCChhhhh-cccCccccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHH
Q 004334          274 SETAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIA  343 (760)
Q Consensus       274 ~~~v~~iie~elG~~~~~iF-~~fd~~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la  343 (760)
                      .+.+..++...+.. |..+- ..++-+++..|-...+|+....         ++.+++|+..++....+.          
T Consensus        51 ~~~l~~l~~~~~p~-w~~~~~~~~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~id----------  119 (424)
T 3mes_A           51 TEIIIGICRKNIPG-WKEINESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYD----------  119 (424)
T ss_dssp             HHHHHHHHHHHSTT-CTTCCGGGEEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCC----------
T ss_pred             HHHHHHHHHHHcCc-cccCCCCceEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcC----------
Confidence            34455555554432 32210 1345578989999999999985         688999996654321110          


Q ss_pred             HHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchh
Q 004334          344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       344 ~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~  417 (760)
                                                 ..+|.++++.+.+.     .+ .|+++...  ..+++|||++|..++
T Consensus       120 ---------------------------R~~E~~~l~~L~~~-----gi-~P~l~~~~--~~~~I~efI~G~~l~  158 (424)
T 3mes_A          120 ---------------------------SKVELDVFRYLSNI-----NI-APNIIADF--PEGRIEEFIDGEPLT  158 (424)
T ss_dssp             ---------------------------HHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEECC
T ss_pred             ---------------------------HHHHHHHHHHHHhc-----CC-CCCEEEEc--CCCEEEEEeCCccCC
Confidence                                       13466666666542     23 68888533  358999999997754

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=90.65  E-value=1.3  Score=47.56  Aligned_cols=155  Identities=13%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             ccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Q 004334          302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELF  381 (760)
Q Consensus       302 asaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f  381 (760)
                      ..| .++||.+..++..|+||-. +    .+..++ +-..++..+.--.|.......+-    +|+.+.    ..++..+
T Consensus        78 ~~G-stgvff~~td~~~~VVK~s-~----~l~~E~-l~s~LA~~LGlpiP~~Riv~~~~----~E~~e~----~~~L~~~  142 (342)
T 1cja_A           78 EKG-TEGLFFVETESGVFIVKRS-T----NIESET-FCSLLCMRLGLHAPKVRVVSSNS----EEGTNM----LECLAAI  142 (342)
T ss_dssp             CST-TSCEEEEEESSCEEEEECC-T----THHHHH-HHHHHHHHHTCCCCCEEEEESSS----HHHHHH----HHHHHHH
T ss_pred             cCC-CCCeEEEEeCCCEEEEeCc-H----HHHHHH-HHHHHHHHhCCCCCCeeEEeeCc----HHHHHH----HHHHHHh
Confidence            344 4788888888999999943 2    333332 22344555543334321111110    122111    1122222


Q ss_pred             HHhcCCCCceeeceeeeccC-CCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHHHHHH-HHHHHhC--Cc--c-ccC
Q 004334          382 ASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY-LEQILSH--GF--F-HAD  453 (760)
Q Consensus       382 ~~~~~~~~~V~VP~vy~e~s-t~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~lv~~~-L~qI~~~--Gf--f-HaD  453 (760)
                      .    ..     +..+.... ....++|||++|.++.+...... .-+..+. ...+-+.+ +..++..  .+  . +.-
T Consensus       143 ~----~~-----~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~~-~k~LG~Ii~FDi~InN~DR~Pl~W~n~  212 (342)
T 1cja_A          143 D----KS-----FRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKST-MQQLGSLMALDVIVNNSDRLPIAWTNE  212 (342)
T ss_dssp             C----SS-----SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHH-HHHHHHHHHHHHHHTCCSSSCSSSCSC
T ss_pred             h----hh-----hHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHHH-HHhhchhheehhhhcCCccCcccccCC
Confidence            1    10     22222222 34569999999998876432100 0012222 22221222 3333321  12  1 112


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccCh
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISP  482 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~  482 (760)
                      =.|+|||+.+ +++++.+||.+++..-+.
T Consensus       213 GN~~NIL~~~-~n~~~~~IDhn~af~~~s  240 (342)
T 1cja_A          213 GNLDNIMLSE-RGATVVPIDSKIIPLDAS  240 (342)
T ss_dssp             CCGGGEEEES-BTTCEEECSCCCCCCCSS
T ss_pred             CChhheEEeC-CCCeEEEEcCCccccCCc
Confidence            4789999986 345799999999965443

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=80.55  E-value=0.63  Score=50.77  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=32.3

Q ss_pred             HHHHhCCChhhhh-cccCccccccccccEEEEEEE-C--------CeeEEEEEecCCchhhHHH
Q 004334          281 VEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARL-K--------GEEVVVKVQRPGLKDLFDI  334 (760)
Q Consensus       281 ie~elG~~~~~iF-~~fd~~PIasaSiGQVhrA~l-~--------G~~VAVKVqrPgi~~~i~~  334 (760)
                      +.+-|+..|.++= ++++-+++..|--=.+|+... +        ++.|++++--|+....+..
T Consensus        39 c~~~l~g~W~~v~~~~l~v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g~~~~~~~~r  102 (401)
T 3g15_A           39 CKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCN  102 (401)
T ss_dssp             HHHHSCGGGTTCCGGGCEEEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC--------
T ss_pred             HHHhCCccccCCCcCCEEEEEeCCccccceEEEEECCCCcccccCCCeEEEEeCCCCccchhhh
Confidence            4455565554432 356668898888889999987 2        3579999988876544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	760
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-06
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-05
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-04
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-04
d1zyla1	325	d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId:	2e-04
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-04
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-04
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-04
d1nd4a_	255	d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferas	4e-04
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-04
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	0.001
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	0.001
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	0.002
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	0.002
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	0.003
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	0.004

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 50/201 (24%)

Query: 285 LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           +G   D  F +FD+E I   S   V++       V V       + L   + +  +  AE
Sbjct: 2   VGMSNDGRFLKFDIE-IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAE 60

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ 404
            L+ +   +       V  YD               + S  K    +             
Sbjct: 61  MLKGLQHPN------IVRFYD--------------SWESTVKGKKCI------------- 87

Query: 405 ILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL---------SHGFFHADPH 455
           +L  E +         +L       K +    + S+  QIL         +    H D  
Sbjct: 88  VLVTELMTS------GTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK 141

Query: 456 PGNIAVDDVNGGRLIFYDFGM 476
             NI +     G +   D G+
Sbjct: 142 CDNIFITGPT-GSVKIGDLGL 161

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 56/204 (27%)

Query: 290 DDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           D V + +D+ E +   + G VHR   +  G     K     +    + D + +R   + +
Sbjct: 22  DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTM 77

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQIL 406
             +           V ++D                                +E     ++
Sbjct: 78  SVLR------HPTLVNLHD-------------------------------AFEDDNEMVM 100

Query: 407 TMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-------HGFFHADPHPGNI 459
             E++ G ++      +++  +  ++       Y+ Q+         + + H D  P NI
Sbjct: 101 IYEFMSGGEL-----FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENI 155

Query: 460 AVDDVNGGRLIFYDFGMMGSISPN 483
                    L   DFG+   + P 
Sbjct: 156 MFTTKRSNELKLIDFGLTAHLDPK 179

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 46/198 (23%)

Query: 291 DVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
            V++ +D+ E + + + G VHR   K  G   V K     +   + +D   ++     + 
Sbjct: 26  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKF----INTPYPLDKYTVKNEISIMN 81

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 407
           ++           + ++D                                +E     +L 
Sbjct: 82  QLH------HPKLINLHD-------------------------------AFEDKYEMVLI 104

Query: 408 MEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVN 465
           +E++ G ++    + ++  +    +  Y  +    L+ +  H   H D  P NI  +   
Sbjct: 105 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKK 164

Query: 466 GGRLIFYDFGMMGSISPN 483
              +   DFG+   ++P+
Sbjct: 165 ASSVKIIDFGLATKLNPD 182

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 30/208 (14%), Positives = 55/208 (26%), Gaps = 59/208 (28%)

Query: 293 FERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDID-----LKNLRVIAE 344
           +E ++  E +       V R   K   +E  VK+        F  +      +      +
Sbjct: 2   YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 61

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ 404
            L+K+         + + + D                                 E  T  
Sbjct: 62  ILRKVS-----GHPNIIQLKDTY-------------------------------ETNTFF 85

Query: 405 ILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPG 457
            L  + +          L +   ++  L        +  +L            H D  P 
Sbjct: 86  FLVFDLMKK------GELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPE 139

Query: 458 NIAVDDVNGGRLIFYDFGMMGSISPNIR 485
           NI +DD    +L   DFG    + P  +
Sbjct: 140 NILLDDDMNIKLT--DFGFSCQLDPGEK 165

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 45/232 (19%), Positives = 69/232 (29%), Gaps = 66/232 (28%)

Query: 290 DDVFERF-DVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           DD  + F D+  I   S G V+ AR     E V +K      K   +   +++     +L
Sbjct: 11  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-NEKWQDIIKEVRFL 69

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQIL 406
           QK+         + +                                    +       L
Sbjct: 70  QKLR------HPNTIQYRG-------------------------------CYLREHTAWL 92

Query: 407 TMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPGNI 459
            MEY  G       + D L V +K L    + +     L       SH   H D   GNI
Sbjct: 93  VMEYCLG------SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNI 146

Query: 460 AVDDVNGGRLIFYDFGMMGSISPNIR----------EGLLEAFYGIYEKDAD 501
            + +   G +   DFG    ++P             E +L    G Y+   D
Sbjct: 147 LLSE--PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 196

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 29/209 (13%), Positives = 62/209 (29%), Gaps = 48/209 (22%)

Query: 293 FERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
            +   + + I     G V     +G +V VK     +K+  D   +     A  + ++  
Sbjct: 6   MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC----IKN--DATAQAFLAEASVMTQLR- 58

Query: 352 KSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV 411
                  + V +                                +  E      +  EY+
Sbjct: 59  -----HSNLVQLLG------------------------------VIVEEKGGLYIVTEYM 83

Query: 412 PGIKI-NRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGR 468
               + + ++S     +    L +++++    +E +  + F H D    N+ V +     
Sbjct: 84  AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSE--DNV 141

Query: 469 LIFYDFGMMGSISPNIREGLLEAFYGIYE 497
               DFG+    S     G L   +   E
Sbjct: 142 AKVSDFGLTKEASSTQDTGKLPVKWTAPE 170

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 18/191 (9%)

Query: 308 QVHRARLK-GEEVVVKVQRPGLKDLFDID--------LKNLRVIAEYLQKIDPKSDGAKR 358
           +V++ + +     VVK  RP       I         L N  V        + ++    +
Sbjct: 37  RVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQ 96

Query: 359 DWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR 418
            +             EA N +   +  + +  +        +     + +          
Sbjct: 97  GFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKL 156

Query: 419 IQSLDELGVDRKRLGRYAVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGRLIF 471
            +    +    K     A +  +  +        +    H D H GNI   D  G   + 
Sbjct: 157 FEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRD--GPMFVD 214

Query: 472 YDFGMMGSISP 482
            D    G    
Sbjct: 215 LDDARNGPAVQ 225

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 29/222 (13%), Positives = 61/222 (27%), Gaps = 56/222 (25%)

Query: 294 ERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID 350
           E F   + +   S   V  AR      E  +K+       + +  +  +    + + ++D
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKR-HIIKENKVPYVTRERDVMSRLD 66

Query: 351 PKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 410
                    +V +Y                                 ++        + Y
Sbjct: 67  ------HPFFVKLYF-------------------------------TFQDDEKLYFGLSY 89

Query: 411 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPGNIAVDD 463
                      L +               Y  +I+         G  H D  P NI +++
Sbjct: 90  AKN------GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNE 143

Query: 464 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 505
                +   DFG    +SP  ++    +F G  +  + ++L 
Sbjct: 144 --DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT 183

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 37/200 (18%)

Query: 288 PLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           P  D   +++    I   + G+V +AR +  G++V +K     +++  +          +
Sbjct: 4   PFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL--MENEKEGFPITALREIK 61

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ 404
            LQ +         + V + + C +                           +       
Sbjct: 62  ILQLLK------HENVVNLIEICRTKASP-----------------------YNRCKGSI 92

Query: 405 ILTMEYVP-GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 463
            L  ++    +       L +  +   +     + + L  I  +   H D    N+ +  
Sbjct: 93  YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLIT- 151

Query: 464 VNGGRLIFYDFGMMGSISPN 483
              G L   DFG+  + S  
Sbjct: 152 -RDGVLKLADFGLARAFSLA 170

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 59/201 (29%)

Query: 294 ERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID 350
           + F+    + A + G V +   K  G  +  K+      ++       +    + L + +
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECN 62

Query: 351 PKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 410
                     V  Y                                 +       + ME+
Sbjct: 63  ------SPYIVGFYG-------------------------------AFYSDGEISICMEH 85

Query: 411 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS--------HGFFHADPHPGNIAVD 462
           + G       SLD++     R+    +      ++         H   H D  P NI V+
Sbjct: 86  MDG------GSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN 139

Query: 463 DVNGGRLIFYDFGMMGSISPN 483
               G +   DFG+ G +  +
Sbjct: 140 S--RGEIKLCDFGVSGQLIDS 158

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/246 (13%), Positives = 65/246 (26%), Gaps = 29/246 (11%)

Query: 286 GAP--LDDVFERFDVEPIAA-ASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           G+P    +    +D        S   V R   +    + VK    G  +    +   L  
Sbjct: 1   GSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSW 60

Query: 342 IAEY---LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFW 398
           +A        +      A RDW+ + +     L           S   D    ++ T+  
Sbjct: 61  LATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADA-MRRLHTLDP 119

Query: 399 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSH-------GFFH 451
                       +   +      L +     +     A      ++ +           H
Sbjct: 120 ATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTH 179

Query: 452 ADPHPGNIAVDDVNGGRLIF----------YDFGMM-GSISPNIREGLLEAF---YGIYE 497
            D    NI V++      I            D  +    I+  +     + F   YGI  
Sbjct: 180 GDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAA 239

Query: 498 KDADKV 503
            D+ ++
Sbjct: 240 PDSQRI 245

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 54/200 (27%)

Query: 288 PLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY 345
           PL+  ++      + +   G V+          V +K         +       RV  E 
Sbjct: 1   PLESQYQV--GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEV 58

Query: 346 --LQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTP 403
             L+K+     G     + + D                               ++E    
Sbjct: 59  VLLKKVSSGFSGV----IRLLD-------------------------------WFERPDS 83

Query: 404 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHP 456
            +L +E    +     Q L +   +R  L      S+  Q+L       + G  H D   
Sbjct: 84  FVLILERPEPV-----QDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKD 138

Query: 457 GNIAVDDVNGGRLIFYDFGM 476
            NI +D  N G L   DFG 
Sbjct: 139 ENILIDL-NRGELKLIDFGS 157

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 28/203 (13%), Positives = 59/203 (29%), Gaps = 57/203 (28%)

Query: 291 DVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           +++E++ + E +     G VHR       +  + K  +         D   ++     L 
Sbjct: 2   ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-----GTDQVLVKKEISILN 56

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 407
                     R+ + +++                                +E     ++ 
Sbjct: 57  IAR------HRNILHLHE-------------------------------SFESMEELVMI 79

Query: 408 MEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPGNIA 460
            E++ G+ I      + +      L    + SY+ Q+        SH   H D  P NI 
Sbjct: 80  FEFISGLDI-----FERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENII 134

Query: 461 VDDVNGGRLIFYDFGMMGSISPN 483
                   +   +FG    + P 
Sbjct: 135 YQTRRSSTIKIIEFGQARQLKPG 157

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 39/218 (17%)

Query: 283 EELGAPLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNL 339
           +E+     +V   +   +P+ + + G V  A     G +V +K      +   ++  K  
Sbjct: 7   QEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQS--ELFAKRA 64

Query: 340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE 399
                 L+ +         + + + D                   F   + +   T F+ 
Sbjct: 65  YRELRLLKHMR------HENVIGLLD------------------VFTPDETLDDFTDFY- 99

Query: 400 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI 459
                 L M ++    + ++   ++LG DR +   Y +   L  I + G  H D  PGN+
Sbjct: 100 ------LVMPFMGTD-LGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNL 152

Query: 460 AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 497
           AV++     L   DFG+       +   ++  +Y   E
Sbjct: 153 AVNE--DCELKILDFGLARQADSEMTGYVVTRWYRAPE 188

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 61/197 (30%)

Query: 290 DDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           +D +E   +  +   + G+V++A+ K        KV    +    + +L++  V  + L 
Sbjct: 11  EDFWEI--IGELGDGAFGKVYKAQNKETSVLAAAKV----IDTKSEEELEDYMVEIDILA 64

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 407
             D  +       V + D                                + Y     + 
Sbjct: 65  SCDHPNI------VKLLD-------------------------------AFYYENNLWIL 87

Query: 408 MEYVPGIKINRIQSLDELGVDRKR-LGRYAVESYLEQIL-------SHGFFHADPHPGNI 459
           +E+  G       ++D + ++ +R L    ++   +Q L        +   H D   GNI
Sbjct: 88  IEFCAG------GAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNI 141

Query: 460 AVDDVNGGRLIFYDFGM 476
                   +L   DFG+
Sbjct: 142 LFTLDGDIKLA--DFGV 156

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 0.002
 Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 39/218 (17%)

Query: 283 EELGAPLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNL 339
           +EL   + +V ER+    P+ + + G V  A     G  V VK      +    I  K  
Sbjct: 7   QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRT 64

Query: 340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWE 399
                 L+ +         + + +                         D         E
Sbjct: 65  YRELRLLKHMK------HENVIGLL------------------------DVFTPARSLEE 94

Query: 400 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI 459
           +    +  + ++ G  +N I    +L  D  +   Y +   L+ I S    H D  P N+
Sbjct: 95  FN--DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNL 152

Query: 460 AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 497
           AV++     L   DFG+       +   +   +Y   E
Sbjct: 153 AVNED--CELKILDFGLARHTDDEMTGYVATRWYRAPE 188

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 44/207 (21%)

Query: 284 ELGAPLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLR 340
           E+G     V +R+   +PI + + G V  A        V +K      ++      K   
Sbjct: 7   EVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN--QTHAKRAY 64

Query: 341 VIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEY 400
                ++ ++       ++ +++ +                            P    E 
Sbjct: 65  RELVLMKCVN------HKNIISLLNVF-------------------------TPQKTLEE 93

Query: 401 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGN 458
                L ME +       IQ      +D +R+     +    ++ + S G  H D  P N
Sbjct: 94  FQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSN 149

Query: 459 IAVDDVNGGRLIFYDFGMMGSISPNIR 485
           I V       L   DFG+  +   +  
Sbjct: 150 IVVKS--DCTLKILDFGLARTAGTSFM 174

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.004
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 41/196 (20%)

Query: 291 DVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           DV  R+     I   + G V  A        V +K   P     +    +      + L 
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTY---CQRTLREIKILL 61

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 407
           +          + + I D   +                + M  V +              
Sbjct: 62  RFR------HENIIGINDIIRA-------------PTIEQMKDVYL-------------- 88

Query: 408 MEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGG 467
           + ++ G  + ++     L  D      Y +   L+ I S    H D  P N+ ++     
Sbjct: 89  VTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNT--TC 146

Query: 468 RLIFYDFGMMGSISPN 483
            L   DFG+     P+
Sbjct: 147 DLKICDFGLARVADPD 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	760
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.79
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.78
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.77
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.77
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.77
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.77
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.76
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.76
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.76
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.76
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.76
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.76
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.75
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.75
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.75
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.75
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.74
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.74
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.74
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.74
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.73
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.73
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.72
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.72
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.72
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.72
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.72
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.72
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.71
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.7
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.7
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.69
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.69
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.68
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.67
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.67
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.67
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.66
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.66
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.66
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.66
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.66
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.65
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.64
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.64
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.64
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.62
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.62
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.62
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.62
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.61
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.61
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.59
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.58
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.57
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.57
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.57
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.52
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.51
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.34
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.8
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.32
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	98.27
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.26
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.45
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.96

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.79  E-value=6.2e-20  Score=197.91  Aligned_cols=194  Identities=18%  Similarity=0.268  Sum_probs=137.6

Q ss_pred             hhhhcccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          290 DDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       290 ~~iF~~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      ..+|+.|+. +.||+|+||.||+|+.  +|+.||||+.+.....    |                               
T Consensus        25 ~~~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~----~-------------------------------   69 (352)
T d1koba_          25 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL----D-------------------------------   69 (352)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH----H-------------------------------
T ss_pred             CCcccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchh----H-------------------------------
Confidence            356666653 7899999999999998  6999999987652110    0                               


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI  444 (760)
                       ...+.+|+..+.++    .|..-|.+-.++ +.....+||||||+|++|.+........++...+...+  +-..+..+
T Consensus        70 -~~~~~~Ei~il~~l----~HpnIv~~~~~~-~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~yl  143 (352)
T d1koba_          70 -KYTVKNEISIMNQL----HHPKLINLHDAF-EDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHM  143 (352)
T ss_dssp             -HHHHHHHHHHHTTC----CSTTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----CCCCCCcEEEEE-EECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             12344566666554    233333333333 34566799999999999987654333345655544433  23448889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      |..|++|+|+||+|||++...+++++|+|||++..+++....       ....+++.+++++++.-...++..|+++++-
T Consensus       144 H~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGv  216 (352)
T d1koba_         144 HEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-------KVTTATAEFAAPEIVDREPVGFYTDMWAIGV  216 (352)
T ss_dssp             HHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHH
T ss_pred             HHCCeeecccccccccccccCCCeEEEeecccceecCCCCce-------eeccCcccccCHHHHcCCCCCCccchHHHHH
Confidence            999999999999999998545789999999999998765321       1235678888999887776777889999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+++++.
T Consensus       217 ilyellt  223 (352)
T d1koba_         217 LGYVLLS  223 (352)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=191.26  Aligned_cols=182  Identities=19%  Similarity=0.204  Sum_probs=130.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+..-...                                    .+.+.+|++
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~------------------------------------~~~~~~E~~   69 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------KELIINEIL   69 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC------------------------------------HHHHHHHHH
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecccChH------------------------------------HHHHHHHHH
Confidence            5799999999999998  59999999875421100                                    112456766


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .|..-|.+-.++ ......+|||||++|++|.++..  ..+++...+...+  +-..+..+|..|++|+|+
T Consensus        70 il~~l----~HpnIv~~~~~~-~~~~~~~ivmEy~~gg~L~~~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDi  142 (293)
T d1yhwa1          70 VMREN----KNPNIVNYLDSY-LVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDI  142 (293)
T ss_dssp             HHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhC----CCCCEeeEeEEE-EECCEEEEEEEecCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            66654    232223333332 34566799999999999998753  2345544443333  223488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|||++.  +|+++|+|||++..+++....      .....+++.+++++++.-+..++..|+++++-.+++++.
T Consensus       143 Kp~NILl~~--~~~vkl~DFG~a~~~~~~~~~------~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemlt  211 (293)
T d1yhwa1         143 KSDNILLGM--DGSVKLTDFGFCAQITPEQSK------RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE  211 (293)
T ss_dssp             SGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHH
T ss_pred             cHHHeEECC--CCcEeeccchhheeecccccc------ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhh
Confidence            999999985  789999999999988654321      112347889999999987777888999999988877764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.2e-20  Score=188.72  Aligned_cols=184  Identities=20%  Similarity=0.187  Sum_probs=131.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                                 ......+.+|++
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~~~~~~~E~~   58 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGVEHQLRREVE   58 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCHHHHHHHHH
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHHccC---------------------------------hHHHHHHHHHHH
Confidence            6899999999999999  58999999876521000                                 011223456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-.++ ...+..+|||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        59 il~~l----~hpnIv~~~~~~-~~~~~~~ivmEy~~~g~L~~~l~~-~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDi  132 (263)
T d2j4za1          59 IQSHL----RHPNILRLYGYF-HDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSKRVIHRDI  132 (263)
T ss_dssp             HHHTC----CCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHhc----CCCCCCeEEEEE-EECCEEEEEEeecCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeee
Confidence            66554    232233333333 334567899999999999887542 2234544443332  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  +|.++|+|||++...+.....        ...+++.+++++++.-...++..|+++++-.+++++.
T Consensus       133 Kp~Nill~~--~~~~kl~DFG~a~~~~~~~~~--------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~  199 (263)
T d2j4za1         133 KPENLLLGS--AGELKIADFGWSVHAPSSRRT--------TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV  199 (263)
T ss_dssp             CGGGEEECT--TSCEEECCCCSCSCCCCCCCE--------ETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             ccccceecC--CCCEeecccceeeecCCCccc--------ccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhc
Confidence            999999985  789999999999887654321        2357889999999987777888999999988877664

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.77  E-value=2.8e-19  Score=192.62  Aligned_cols=193  Identities=17%  Similarity=0.241  Sum_probs=137.4

Q ss_pred             hhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      .+.+.|+ .+.||.|+||+||+|+.  +|+.||||+....-..                                    -
T Consensus        23 ~il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~------------------------------------~   66 (350)
T d1koaa2          23 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES------------------------------------D   66 (350)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHH------------------------------------H
T ss_pred             CCccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchh------------------------------------h
Confidence            3444554 36899999999999998  5999999987542110                                    0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      .+.+.+|++.+.++.    +..-|.+-.++ +.....+|||||++|++|.+........++...+...+  +-..+..+|
T Consensus        67 ~~~~~~E~~il~~l~----HpnIv~~~~~~-~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH  141 (350)
T d1koaa2          67 KETVRKEIQTMSVLR----HPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH  141 (350)
T ss_dssp             HHHHHHHHHHHHHTC----CTTBCCEEEEE-EETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC----CCCCCcEEEEE-EECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            123456777777662    33334444444 34567899999999999988764333345554444332  233488899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      ..|++|+|+||+|||+....++.++|+|||++..+++....       ....+++.+++++++.-...+...|+++++-.
T Consensus       142 ~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-------~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvi  214 (350)
T d1koaa2         142 ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVL  214 (350)
T ss_dssp             HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE-------EEECSCTTTCCHHHHHTCCBCHHHHHHHHHHH
T ss_pred             hcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc-------ceecCcccccCHHHHcCCCCChhHhhhhhhHH
Confidence            99999999999999997534689999999999988765321       12356888999999887666777899999988


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       215 lyell~  220 (350)
T d1koaa2         215 SYILLS  220 (350)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877664

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=1.2e-18  Score=170.87  Aligned_cols=151  Identities=15%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      ++||+|++|+||+|++ +|++||||+.+++.....               .....   ....-.....+.......|..+
T Consensus         6 ~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~e~~~   67 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK---------------KVKEK---RDYGDLHFSVLAIRSARNEFRA   67 (191)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC---------------------CCCC----------CHHHHHHHHHHHHHHH
T ss_pred             CEeeeCcceEEEEEECCCCCEEEEEEEecccchhh---------------hhhhh---hhhccHHHHHHHHHHHHHHHHH
Confidence            5899999999999998 799999999998743210               00000   0000001112223334567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  457 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~~~L~qI~~~GffHaDpHPG  457 (760)
                      +.++.       .+.+|..|.  ....+|+|||++|.++.++..     .....++..++. .+.++|.+|++|+|+||+
T Consensus        68 l~~l~-------~~~v~~~~~--~~~~~lvme~~~~~~~~~l~~-----~~~~~i~~ql~~-~l~~lH~~giiHrDiKP~  132 (191)
T d1zara2          68 LQKLQ-------GLAVPKVYA--WEGNAVLMELIDAKELYRVRV-----ENPDEVLDMILE-EVAKFYHRGIVHGDLSQY  132 (191)
T ss_dssp             HHHTT-------TSSSCCEEE--EETTEEEEECCCCEEGGGCCC-----SCHHHHHHHHHH-HHHHHHHTTEECSCCSTT
T ss_pred             HHHcc-------CCCcceEEE--ecCCEEEEEeeccccccchhh-----HHHHHHHHHHHH-HHHHHhhCCEEEccCChh
Confidence            77663       245677663  245689999999987765321     234455555544 588999999999999999


Q ss_pred             cEEEeccCCCcEEEEeecceeccChhhH
Q 004334          458 NIAVDDVNGGRLIFYDFGMMGSISPNIR  485 (760)
Q Consensus       458 NILV~~~~~g~l~LiDFG~v~~l~~~~r  485 (760)
                      |||+++   +.++|+|||++...+....
T Consensus       133 NILv~~---~~~~liDFG~a~~~~~~~~  157 (191)
T d1zara2         133 NVLVSE---EGIWIIDFPQSVEVGEEGW  157 (191)
T ss_dssp             SEEEET---TEEEECCCTTCEETTSTTH
T ss_pred             heeeeC---CCEEEEECCCcccCCCCCc
Confidence            999983   5699999999988875443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.5e-19  Score=181.70  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=121.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|+||+||+|++ +|+.||||+.+.+....                                     +.+.+|++.
T Consensus        11 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~-------------------------------------~~~~~E~~~   53 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------EDFIEEAEV   53 (263)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECCSSSSCH-------------------------------------HHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcH-------------------------------------HHHHHHHHH
Confidence            5799999999999999 68999999976532110                                     124567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +.++    .|.+-|.+-.++ ......+|||||++|++|.++........+........  +...+..+|..|++|+|+|
T Consensus        54 l~~l----~HpnIv~~~g~~-~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlK  128 (263)
T d1sm2a_          54 MMKL----SHPKLVQLYGVC-LEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA  128 (263)
T ss_dssp             HHHC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCS
T ss_pred             HHhc----CCCCccccccee-ccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccc
Confidence            7666    233233333333 33567899999999999999764443334444333222  2334888999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++|+|||++..+........     ....+...+++++++..+..++.+|++++.-.+.+++
T Consensus       129 p~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~  196 (263)
T d1sm2a_         129 ARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF  196 (263)
T ss_dssp             GGGEEECG--GGCEEECSCC-----------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhheeecC--CCCeEecccchheeccCCCceee-----cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHH
Confidence            99999986  78999999999988765433211     1123566788899888877788889999998777665

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=7e-19  Score=185.11  Aligned_cols=189  Identities=14%  Similarity=0.162  Sum_probs=118.9

Q ss_pred             cccccccccEEEEEEE--CCe---eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~---~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|+||+||+|++  +|+   .||||..+++..+.                                   ..+.+.+
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~~   76 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEK-----------------------------------QRRDFLS   76 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHH-----------------------------------HHHHHHH
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHH-----------------------------------HHHHHHH
Confidence            6899999999999998  343   58888876643221                                   1123456


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |++.+.++    .|.+-|.+-.++ ......++||||++|++|.++.......++...+...+  +...+..+|.+|++|
T Consensus        77 E~~~l~~l----~HpnIv~l~g~~-~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiH  151 (299)
T d1jpaa_          77 EASIMGQF----DHPNVIHLEGVV-TKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVH  151 (299)
T ss_dssp             HHHHHTTC----CCTTBCCEEEEE-CSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCCccEEEEE-eeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            76666554    233333333333 33467799999999999998765444345544443332  334488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.|||++.  ++.++|+|||++..+.+........... -..+.+.++++++...+..++..|+++++-.+.+++
T Consensus       152 rDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~~~~~-~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~  227 (299)
T d1jpaa_         152 RDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSAL-GGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM  227 (299)
T ss_dssp             SCCCGGGEEECT--TCCEEECCC------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CccccceEEECC--CCcEEECCcccceEccCCCCcceeeecc-cccCCccccCHHHHhcCCCCcccccccchHHHHHHH
Confidence            999999999985  8899999999998886543322111111 123567788999988888888889999998876665

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.2e-19  Score=189.69  Aligned_cols=192  Identities=16%  Similarity=0.262  Sum_probs=136.3

Q ss_pred             hhhcccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       291 ~iF~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      ++|+.|. .+.||.|+||+||+|+.  +|+.||||+.+..-.+                                     
T Consensus         2 ~~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~-------------------------------------   44 (321)
T d1tkia_           2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-------------------------------------   44 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-------------------------------------
T ss_pred             CCccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc-------------------------------------
Confidence            4566554 37899999999999998  5999999998653111                                     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  445 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~  445 (760)
                      ...+.+|.+.+.++    .|..-|.+-.++ +..+..+||||||+|++|.+........++...+...+  +-..++.+|
T Consensus        45 ~~~~~~Ei~il~~l----~HpnIv~~~~~~-~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH  119 (321)
T d1tkia_          45 QVLVKKEISILNIA----RHRNILHLHESF-ESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH  119 (321)
T ss_dssp             HHHHHHHHHHHHHS----CCTTBCCEEEEE-EETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCCCeEEEEE-EECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            01234566666554    233334444444 34567899999999999998764433345655554433  234488899


Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                      .+|++|+|+||.|||++..+.++++++|||++..+......       ....+.+.+++++...-...++..|+++++-.
T Consensus       120 ~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~-------~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvi  192 (321)
T d1tkia_         120 SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTL  192 (321)
T ss_dssp             HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHHHHHHHH
T ss_pred             HcCCCcccccccceeecCCCceEEEEcccchhhccccCCcc-------cccccccccccchhccCCCCCchhhcccHHHH
Confidence            99999999999999998534568999999999887654321       12345677888888776666778899999988


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +++++.
T Consensus       193 ly~ll~  198 (321)
T d1tkia_         193 VYVLLS  198 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877653

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.2e-19  Score=187.08  Aligned_cols=188  Identities=16%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+....                ..                 .+....+.+|++
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~----------------~~-----------------~~~~~~~~~E~~   60 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRHI----------------IK-----------------ENKVPYVTRERD   60 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH----------------HH-----------------TTCHHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHc----------------cC-----------------HHHHHHHHHHHH
Confidence            6899999999999998  599999998754100                00                 001123456776


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-.++ +.....+|||||++|++|.++.... ..++...+....  +-..++.+|..|++|+|+
T Consensus        61 il~~l----~HpnIv~l~~~~-~~~~~~~ivmEy~~gg~L~~~~~~~-~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDi  134 (288)
T d1uu3a_          61 VMSRL----DHPFFVKLYFTF-QDDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHGKGIIHRDL  134 (288)
T ss_dssp             HHHHC----CSTTBCCEEEEE-ECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHHc----CCCCeeEEEEEE-EECCEEEEEEEccCCCCHHHhhhcc-CCCCHHHHHHHHHHHHHHHHhhccccEEcCcC
Confidence            66655    222223332222 2345669999999999998865422 234444333222  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||+++  +|.++|+|||++..++........    ....+++.+++++++.-...+..+|+++++-.+++++.
T Consensus       135 Kp~NIll~~--~~~vkl~DFG~a~~~~~~~~~~~~----~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~  205 (288)
T d1uu3a_         135 KPENILLNE--DMHIQITDFGTAKVLSPESKQARA----NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA  205 (288)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECC--------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCC--CceEEecccccceecccCCccccc----ccccCCccccCceeeccCCCCcccceehhhHHHHHHhh
Confidence            999999986  889999999999998765443222    12357899999999987777778899999988877664

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=8.8e-19  Score=185.48  Aligned_cols=191  Identities=18%  Similarity=0.194  Sum_probs=134.3

Q ss_pred             ChhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHH
Q 004334          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (760)
Q Consensus       288 ~~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~  365 (760)
                      ++++.|..+  +.||.|+||.||+|+.  +|+.||||+.+......                                 .
T Consensus        12 dp~~~y~~l--~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~---------------------------------~   56 (309)
T d1u5ra_          12 DPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------N   56 (309)
T ss_dssp             CHHHHEEEE--EEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH---------------------------------H
T ss_pred             CcHHhcEee--EEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC---------------------------------H
Confidence            456666544  5799999999999998  69999999976532111                                 1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004334          366 ECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  443 (760)
Q Consensus       366 E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~q  443 (760)
                      +..+.+.+|++.+.++    .|..-|.+-.++ ......+|||||++|+.+..+.. ....++...+...+  +-..+..
T Consensus        57 ~~~~~~~~Ei~il~~l----~HpnIv~~~~~~-~~~~~~~iv~E~~~~g~l~~~~~-~~~~l~e~~~~~i~~qi~~aL~y  130 (309)
T d1u5ra_          57 EKWQDIIKEVRFLQKL----RHPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAVTHGALQGLAY  130 (309)
T ss_dssp             HHHHHHHHHHHHHTTC----CCTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC----CCCCEeeEEEEE-EECCEEEEEEEecCCCchHHHHH-hCCCCCHHHHHHHHHHHHHHHHH
Confidence            1123345676666654    333334444443 23456799999999998876543 23345544443332  2344888


Q ss_pred             HHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCChH
Q 004334          444 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTT  520 (760)
Q Consensus       444 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~---lG~~~~~~D~~  520 (760)
                      +|..|++|+|+||.|||++.  ++.++|+|||++........          ..+++.+++++++.   .+..+...|++
T Consensus       131 LH~~~iiHrDiKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~----------~~GT~~Y~APE~~~~~~~~~y~~~~Diw  198 (309)
T d1u5ra_         131 LHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVW  198 (309)
T ss_dssp             HHHTTCBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBCC----------CCSCGGGCCHHHHTTTTSCCBCTHHHHH
T ss_pred             HHhCCEeccCCCcceEEECC--CCCEEEeecccccccCCCCc----------cccCccccCHHHHhccCCCCcCchhhhh
Confidence            99999999999999999986  89999999999988766432          35789999999884   23456678999


Q ss_pred             HHHHHHHHHHH
Q 004334          521 AVRRTAQFFLN  531 (760)
Q Consensus       521 al~~~~~~~l~  531 (760)
                      +++-.+.+++.
T Consensus       199 SlGvilyel~~  209 (309)
T d1u5ra_         199 SLGITCIELAE  209 (309)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99988877654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.1e-19  Score=189.57  Aligned_cols=182  Identities=16%  Similarity=0.168  Sum_probs=128.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                   ....+.+|++
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-----------------------------------~~~~~~~Ei~   56 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRNQIIRELQ   56 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTT-----------------------------------HHHHHHHHGG
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHH-----------------------------------HHHHHHHHHH
Confidence            5799999999999998  69999999987643221                                   1122345655


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~-~GffHaD  453 (760)
                      .+.++    .|..-|.+-.++ ...+..+|||||++|++|.++... ...++...+....  +-..+..+|+ +|++|||
T Consensus        57 il~~l----~HpnIv~l~~~~-~~~~~~~iVmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRD  130 (322)
T d1s9ja_          57 VLHEC----NSPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREKHKIMHRD  130 (322)
T ss_dssp             GGGGC----CCTTBCCEEEEE-ECSSEEEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             HHHhC----CCCCCCcEEEEE-EECCEEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccc
Confidence            55443    233233333333 334567999999999999987642 2234444333322  2234778896 6999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+|||++.  +|.++|+|||++..+.+....        -..++..+++++++.-+..++..|+++++-.+.+++.
T Consensus       131 iKP~NILl~~--~~~vkl~DFGla~~~~~~~~~--------~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~  198 (322)
T d1s9ja_         131 VKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV  198 (322)
T ss_dssp             CSGGGEEECT--TCCEEECCCCCCHHHHHHTC-----------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHH
T ss_pred             cCHHHeeECC--CCCEEEeeCCCccccCCCccc--------cccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999986  899999999999877544322        1357788899999988788889999999998887764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.3e-19  Score=185.29  Aligned_cols=192  Identities=15%  Similarity=0.148  Sum_probs=131.3

Q ss_pred             hhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       289 ~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      +++.|+-  .+.||+|++|.||+|+.  +|+.||||+.+..-.+.                            .      
T Consensus        10 p~d~Y~i--~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------~------   53 (288)
T d2jfla1          10 PEDFWEI--IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE----------------------------L------   53 (288)
T ss_dssp             GGGTEEE--EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGG----------------------------G------
T ss_pred             cccCeEE--eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHH----------------------------H------
Confidence            4554432  24799999999999998  59999999976532111                            0      


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI  444 (760)
                        +.+.+|++.+.++    .|..-|.+-.++ ......+|||||++|++|.++.......++...+...+  +-..+..+
T Consensus        54 --~~~~~E~~il~~l----~HpnIv~l~~~~-~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~yl  126 (288)
T d2jfla1          54 --EDYMVEIDILASC----DHPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYL  126 (288)
T ss_dssp             --GGTHHHHHHHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhC----CCCCCCeEEEEE-eeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence              1234566666654    233333343333 33566799999999999998754333345554443332  22347889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCh
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDT  519 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-----G~~~~~~D~  519 (760)
                      |.+|++|+|+||+|||++.  +|.++|+|||++..+......      ..-..+++.+++++++..     ...++..|+
T Consensus       127 H~~~ivHrDiKp~NIll~~--~~~~Kl~DFG~a~~~~~~~~~------~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~Di  198 (288)
T d2jfla1         127 HDNKIIHRDLKAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRPYDYKADV  198 (288)
T ss_dssp             HHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECHHHHHH------HTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHH
T ss_pred             HHCCEEEeecChhheeECC--CCCEEEEechhhhccCCCccc------ccccccccccCCHHHHhhcccCCCCCChhhhH
Confidence            9999999999999999986  889999999999877554221      122357888999998742     233566799


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++++-.+.+++.
T Consensus       199 wSlGvilyemlt  210 (288)
T d2jfla1         199 WSLGITLIEMAE  210 (288)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999988777654

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.3e-19  Score=189.27  Aligned_cols=183  Identities=16%  Similarity=0.142  Sum_probs=129.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                 .+..+.+.+|+.
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~---------------------------------~~~~~~~~~E~~   56 (316)
T d1fota_          10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR---------------------------------LKQVEHTNDERL   56 (316)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCHHHHHHHHH
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEchHHccC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  59999999976421000                                 000123455666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHH--HHHHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR--YAVESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~--~lv~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-.++ ......++||||++|+.+.++..... ......+..  ..+...+..+|..|++|+|+
T Consensus        57 il~~l----~HpnIv~~~~~~-~~~~~~~ivmE~~~gg~l~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~~iiHrDi  130 (316)
T d1fota_          57 MLSIV----THPFIIRMWGTF-QDAQQIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLHSKDIIYRDL  130 (316)
T ss_dssp             HHHSC----CBTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHTTTEECCCC
T ss_pred             HHHhc----cCcChhheeeeE-eeCCeeeeEeeecCCccccccccccc-cccccHHHHHHHHHHHhhhhhccCcEEcccc
Confidence            55544    232223333333 34466799999999999888654322 233332221  12334578899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|||++.  +|.++|+|||++..+.....         ...+++.+++++++.-...++..|+++++-.+++++.
T Consensus       131 Kp~NILl~~--~g~vkL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemlt  196 (316)
T d1fota_         131 KPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA  196 (316)
T ss_dssp             CGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CchheeEcC--CCCEEEecCccceEeccccc---------cccCcccccCHHHHcCCCCCchhhccccchhHHHHHh
Confidence            999999985  89999999999998865432         2458889999999877667888999999988877664

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.9e-18  Score=179.07  Aligned_cols=190  Identities=21%  Similarity=0.170  Sum_probs=126.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                 .+....+.+|++
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~~~~~~~E~~   59 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD---------------------------------PSFYLRFRREAQ   59 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC---------------------------------HHHHHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC---------------------------------HHHHHHHHHHHH
Confidence            6899999999999998  69999999987743221                                 112233556777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      .+.++    .+..-|.+-.++....   ...+|||||++|++|.+..... ..++...+...+  +-..+..+|+.|++|
T Consensus        60 ~l~~~----~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~-~~l~~~~~~~i~~qi~~al~~lH~~~iiH  134 (277)
T d1o6ya_          60 NAAAL----NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQNGIIH  134 (277)
T ss_dssp             HHHTC----CCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhc----CCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhccc-CCCCHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            66654    2333333444443222   2358999999999998865322 234544433332  223488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +|+||+|||++.  ++.++++|||....+.........   .....+++.++++++..-+..++..|+++++-.+++++.
T Consensus       135 rDiKP~NIll~~--~~~~~l~d~~~~~~~~~~~~~~~~---~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyellt  209 (277)
T d1o6ya_         135 RDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT  209 (277)
T ss_dssp             CCCSGGGEEEET--TSCEEECCCTTCEECC-------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcccccCc--cccceeehhhhhhhhccccccccc---cccccCcccccCHHHHcCCCCCcceecccchHHHHHHHh
Confidence            999999999986  889999999998877554322111   122346888999999887777788899999988877764

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-19  Score=188.56  Aligned_cols=186  Identities=19%  Similarity=0.209  Sum_probs=126.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|.||+|+.  +|+.||||+.+..-..                                   +..+.+.+|++
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~-----------------------------------~~~~~~~~Ei~   55 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-----------------------------------DCPENIKKEIC   55 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------CHHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc-----------------------------------hHHHHHHHHHH
Confidence            6899999999999998  5999999987542100                                   01122456766


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-..+ ...+..+|||||++|++|.++... ...++...+....  +-..++.+|..|++|+|+
T Consensus        56 ~l~~l----~HpnIv~~~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDi  129 (271)
T d1nvra_          56 INKML----NHENVVKFYGHR-REGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDI  129 (271)
T ss_dssp             HHHTC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHhC----CCCCEeeEeeee-ccCceeEEEEeccCCCcHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcc
Confidence            66554    232233333333 334567899999999999987532 2234444333322  223478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  ++.++|+|||++..++.......    ..-..+++.+++++++..... +...|+++++-.+.+++.
T Consensus       130 Kp~NILl~~--~~~~KL~DFG~a~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~  201 (271)
T d1nvra_         130 KPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA  201 (271)
T ss_dssp             CGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHEEECC--CCCEEEccchhheeeccCCcccc----ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHh
Confidence            999999985  78999999999988754432211    111347889999998876543 456799999988877764

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.9e-19  Score=182.36  Aligned_cols=185  Identities=13%  Similarity=0.107  Sum_probs=123.8

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|+||.||+|++++ .||||+.+......                                  +-.+.+.+|+..+
T Consensus        14 ~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~----------------------------------~~~~~~~~E~~~l   58 (276)
T d1uwha_          14 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP----------------------------------QQLQAFKNEVGVL   58 (276)
T ss_dssp             SEEEECSSCEEEEEESSS-EEEEEECCCSSCCT----------------------------------THHHHHHHHHHHH
T ss_pred             EEEeeCCCcEEEEEEECC-EEEEEEEEcccCCH----------------------------------HHHHHHHHHHHHH
Confidence            679999999999999866 49999987532111                                  0012345677666


Q ss_pred             HHHHHhcCCCCceeeceeee-ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~-e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      .++     ++++|.  +.+. ......+|||||++|++|.++.......++...+....  +...+..+|..|++|+|+|
T Consensus        59 ~~l-----~HpnIv--~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlK  131 (276)
T d1uwha_          59 RKT-----RHVNIL--LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK  131 (276)
T ss_dssp             TTC-----CCTTBC--CEEEEECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HhC-----CCCCEe--eeeEEEeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccC
Confidence            655     233332  2222 23355799999999999998765444445555444332  3345888999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCChHHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG---~~~~~~D~~al~~~~~~~l~  531 (760)
                      |.|||++.  ++.++|+|||++..++.......    ..-..+++.+++++++...   ..+...|+++++-.+.+++.
T Consensus       132 p~NiLl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~t  204 (276)
T d1uwha_         132 SNNIFLHE--DLTVKIGDFGLATVKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT  204 (276)
T ss_dssp             GGGEEEET--TSSEEECCCCCSCC----------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHEEEcC--CCCEEEccccceeeccccCCccc----ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHH
Confidence            99999986  88999999999988765433221    1224578889999998643   23556799999988877764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.6e-19  Score=183.39  Aligned_cols=183  Identities=14%  Similarity=0.083  Sum_probs=128.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|++  +|+.||||+.+.+..+                                     .+.+.+|++
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~-------------------------------------~~~~~~E~~   65 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------VEEFLKEAA   65 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSC-------------------------------------HHHHHHHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCccch-------------------------------------HHHHHHHHH
Confidence            5799999999999999  5999999987653211                                     012456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .|..-|.+-.++ ......+|||||++|+++.++.... ...++...+...  .+...++.+|..|++|+|
T Consensus        66 il~~l----~HpnIv~~~~~~-~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrD  140 (287)
T d1opja_          66 VMKEI----KHPNLVQLLGVC-TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRD  140 (287)
T ss_dssp             HHHHC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHhC----CCCCEecCCccE-eeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCc
Confidence            77665    232223333332 3345679999999999998875432 223444333332  233458899999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.|||++.  ++.++|+|||++..++.......     ....+...+++++.+.-+..++..|+++++-.+.+++
T Consensus       141 lKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~~~~-----~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell  210 (287)
T d1opja_         141 LAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA  210 (287)
T ss_dssp             CSGGGEEECG--GGCEEECCCCCTTTCCSSSSEEE-----TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred             cccCeEEECC--CCcEEEccccceeecCCCCceee-----ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHH
Confidence            9999999986  78999999999988765432111     1123566788888887777788899999998777665

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.3e-18  Score=183.77  Aligned_cols=185  Identities=16%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+......+.                                   ....+.+|++
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------~~~~~~~Ei~   59 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-----------------------------------KEGSMENEIA   59 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC---------------------------------------------CHHHH
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-----------------------------------HHHHHHHHHH
Confidence            5799999999999998  59999999976531110                                   0122345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-.++ +..+..+|||||++|++|.++... ...++...+...+  +-..+..+|..|++|+|+
T Consensus        60 il~~l----~HpnIv~l~~~~-~~~~~~~lvmE~~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDi  133 (307)
T d1a06a_          60 VLHKI----KHPNIVALDDIY-ESGGHLYLIMQLVSGGELFDRIVE-KGFYTERDASRLIFQVLDAVKYLHDLGIVHRDL  133 (307)
T ss_dssp             HHHTC----CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHHhC----CCCCCCcEEEEE-EECCEEEEEEeccCCCcHHHhhhc-ccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEe
Confidence            66554    232223333333 344567999999999999987632 2234444433332  223478899999999999


Q ss_pred             CCCcEEEec-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~-~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||++.. .+++.++|+|||++...++....       .-..+++.+++++++.-+..++..|+++++-.+++++.
T Consensus       134 Kp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~-------~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~  204 (307)
T d1a06a_         134 KPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL-------STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC  204 (307)
T ss_dssp             CGGGEEESSSSTTCCEEECCC-------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             cccceeecccCCCceEEEeccceeEEccCCCee-------eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHh
Confidence            999999963 23689999999999877654321       11246788999999887777888999999988877653

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.74  E-value=6.8e-18  Score=175.79  Aligned_cols=196  Identities=14%  Similarity=0.128  Sum_probs=132.2

Q ss_pred             cccC-ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       294 ~~fd-~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      +.|+ .+.||.|++|+||+|+.  +|+.||||+.+..-....                          . ..-..+....
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~--------------------------~-~~~~~~~~~~   55 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF--------------------------S-AEEVQELREA   55 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC--------------------------C-HHHHHHHHHH
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccch--------------------------h-HHHHHHHHHH
Confidence            3444 36899999999999998  699999998765321110                          0 0112333445


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          371 LYQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      +.+|+..+.++..    +++ +.+-.++ +.....+|||||++|++|.++... ...++...+....  +-..++.+|..
T Consensus        56 ~~~E~~~l~~l~~----hpnIv~~~~~~-~~~~~~~ivmE~~~~g~L~~~l~~-~~~l~e~~~~~~~~qi~~al~~lH~~  129 (277)
T d1phka_          56 TLKEVDILRKVSG----HPNIIQLKDTY-ETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLEVICALHKL  129 (277)
T ss_dssp             HHHHHHHHHHHTT----CTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC----CCCeEEEEeec-ccCcceEEEEEcCCCchHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            6678888888742    233 3333333 334556999999999999997643 3345544444333  33448889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCCCCChHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVPTGDTTA  521 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG------~~~~~~D~~a  521 (760)
                      |++|+|+||+||+++.  ++.++|+|||++..+++.....       ...++..+++++.....      ..++..|+++
T Consensus       130 ~ivHrDlkp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~~PE~~~~~~~~~~~~~~~~~Diws  200 (277)
T d1phka_         130 NIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKLR-------EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWS  200 (277)
T ss_dssp             TEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCBC-------CCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHH
T ss_pred             CCcccccccceEEEcC--CCCeEEccchheeEccCCCcee-------eeeccCCCCCHHHhhccccccCCCCCchheEcc
Confidence            9999999999999985  8899999999999887643221       12345556666655421      2345679999


Q ss_pred             HHHHHHHHHH
Q 004334          522 VRRTAQFFLN  531 (760)
Q Consensus       522 l~~~~~~~l~  531 (760)
                      ++-.+.+++.
T Consensus       201 lGvilyeml~  210 (277)
T d1phka_         201 TGVIMYTLLA  210 (277)
T ss_dssp             HHHHHHHHHH
T ss_pred             cchhhhhhcc
Confidence            9988777654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=180.48  Aligned_cols=187  Identities=16%  Similarity=0.134  Sum_probs=119.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+.+-...                                  ...+.+.+|++
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~~~~~E~~   55 (269)
T d2java1          10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEKQMLVSEVN   55 (269)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCH----------------------------------HHHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCH----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  59999999876632111                                  11123456666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-CCCeEEEEeecCCCchhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCC--
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHG--  448 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-st~~vLVME~ieG~~L~d~~~l~---~~g~d~~~la~~l--v~~~L~qI~~~G--  448 (760)
                      .+.++    .|..-|.+-.++.+. ....+|||||++|++|.++....   ...++...+...+  +...++.+|..|  
T Consensus        56 il~~l----~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~  131 (269)
T d2java1          56 LLREL----KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG  131 (269)
T ss_dssp             HTTSC----CCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHC----CCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            65544    233233333333322 34468999999999999875321   2234444443332  223478889866  


Q ss_pred             ---ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHH
Q 004334          449 ---FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  525 (760)
Q Consensus       449 ---ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~  525 (760)
                         ++|+|+||.|||++.  +|.++|+|||++..+++....      .....+++.+++++++..+..++..|+++++-.
T Consensus       132 ~~~IiHrDiKp~NIll~~--~~~vkl~DFG~a~~~~~~~~~------~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvi  203 (269)
T d2java1         132 GHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSF------AKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL  203 (269)
T ss_dssp             --------CCGGGEEECT--TSCEEECCHHHHHHC-----------------CCCSCCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCEEeCcCchhhcCcCC--CCcEEEeeccceeecccCCCc------cccCCCCcccCCHHHHcCCCCChHHHHHhhCHH
Confidence               999999999999986  789999999999988754321      112346788999999877767788899999988


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +++++.
T Consensus       204 lyel~t  209 (269)
T d2java1         204 LYELCA  209 (269)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            777653

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.5e-18  Score=186.75  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=130.3

Q ss_pred             ccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .|+. +.||.|++|+||+|+.  +|+.||||+.......    +            .                 .....+
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~----~------------~-----------------~~~~~~   88 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVV----K------------L-----------------KQIEHT   88 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH----H------------T-----------------TCHHHH
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHcc----C------------H-----------------HHHHHH
Confidence            4443 6899999999999998  5999999987541100    0            0                 001123


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+|.+.+..+    .+..-|.+-.++ ......++||||++|+.+.+.... ...++...+...+  +-..+..+|.+|+
T Consensus        89 ~~E~~il~~l----~hpnIv~~~~~~-~~~~~~~~v~e~~~~g~l~~~l~~-~~~l~e~~~~~i~~qi~~aL~yLH~~~i  162 (350)
T d1rdqe_          89 LNEKRILQAV----NFPFLVKLEFSF-KDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDL  162 (350)
T ss_dssp             HHHHHHHTTC----CCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHc----CCCcEeeccccc-ccccccccccccccccchhhhHhh-cCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            4566555544    222223333333 344567999999999999886532 2234544433332  2234788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.|||++.  +|.++|+|||++..++....         ...+++.+++++++.-...++..|+++++-.++++
T Consensus       163 iHRDIKP~NILl~~--~g~ikL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyem  231 (350)
T d1rdqe_         163 IYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEM  231 (350)
T ss_dssp             ECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             ecCcCCHHHcccCC--CCCEEeeeceeeeecccccc---------cccCccccCCHHHHcCCCCCccccccchhHHHHHH
Confidence            99999999999985  78999999999998875432         24578899999998876677788999999888776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       232 lt  233 (350)
T d1rdqe_         232 AA  233 (350)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-18  Score=181.10  Aligned_cols=185  Identities=14%  Similarity=0.119  Sum_probs=130.3

Q ss_pred             ccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       300 PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      .||.|+||.||+|++    ++..||||+.+++..+.                                   ..+.+.+|+
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------------~~~~~~~E~   60 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------DTEEMMREA   60 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------HHHHHHHHH
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHH-----------------------------------HHHHHHHHH
Confidence            599999999999987    25689999987643221                                   112345677


Q ss_pred             HHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          376 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      +.+.++    .+..-|.+-.++  .+...+|||||++|++|.++.......++...+...+  +...+..+|..|++|+|
T Consensus        61 ~il~~l----~HpnIv~l~g~~--~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrD  134 (285)
T d1u59a_          61 QIMHQL----DNPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRD  134 (285)
T ss_dssp             HHHHHC----CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHhC----CCCCEeeEeeee--ccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCc
Confidence            777665    233333333333  2356799999999999998754333445555444433  33448889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +||.||+++.  ++.++|+|||++..+........   ......+.+.+++++++..+..++..|+++++-.+.+++
T Consensus       135 lKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~l  206 (285)
T d1u59a_         135 LAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL  206 (285)
T ss_dssp             CSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             Cchhheeecc--CCceeeccchhhhcccccccccc---cccccccCccccChHHHhCCCCCccchhhcchHHHHHHH
Confidence            9999999986  88999999999988765422110   011123567788899888887788889999998776654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-18  Score=181.54  Aligned_cols=190  Identities=14%  Similarity=0.088  Sum_probs=129.8

Q ss_pred             ccCccccccccccEEEEEEE----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          295 RFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       295 ~fd~~PIasaSiGQVhrA~l----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      .++++.||.|+||+||+|++    .++.||||+.+....+                                  .+..+.
T Consensus         9 ~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~----------------------------------~~~~~~   54 (277)
T d1xbba_           9 TLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND----------------------------------PALKDE   54 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC---------------------------------------CHHHHH
T ss_pred             eecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCC----------------------------------HHHHHH
Confidence            34556899999999999987    2578999997653111                                  012234


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  448 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~G  448 (760)
                      +.+|++.+.++    .|..-|.+-.++  .....+|||||++|++|.++.... ..++...+...+  +...+..+|+.|
T Consensus        55 ~~~E~~il~~l----~HpnIv~~~g~~--~~~~~~lvmE~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~gl~ylH~~~  127 (277)
T d1xbba_          55 LLAEANVMQQL----DNPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESN  127 (277)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCCceEEEEe--ccCCEEEEEEcCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHhhHHhCC
Confidence            56777777665    233334443333  235679999999999999876432 234544444333  334588899999


Q ss_pred             ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 004334          449 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       449 ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~  528 (760)
                      ++|+|+||.|||++.  ++.++++|||++..+.........   .....+.+.+++++++..+..++..|+++++-.+.+
T Consensus       128 iiHrDlKp~Nill~~--~~~~kl~DFGla~~~~~~~~~~~~---~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~e  202 (277)
T d1xbba_         128 FVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE  202 (277)
T ss_dssp             EECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             cccCCCcchhhcccc--cCcccccchhhhhhcccccccccc---ccccCCCceecCchhhcCCCCCchhhhccchhhhhH
Confidence            999999999999986  899999999999877543221100   011245678889998887777788899999988776


Q ss_pred             HH
Q 004334          529 FL  530 (760)
Q Consensus       529 ~l  530 (760)
                      ++
T Consensus       203 ll  204 (277)
T d1xbba_         203 AF  204 (277)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.2e-18  Score=178.73  Aligned_cols=182  Identities=16%  Similarity=0.169  Sum_probs=127.6

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||.|+||.||+|++ +|+.||||+.+.+-..                                     .+.+.+|+..
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~-------------------------------------~~~~~~E~~~   61 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS-------------------------------------PDAFLAEANL   61 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSC-------------------------------------HHHHHHHHHH
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEccCcCC-------------------------------------HHHHHHHHHH
Confidence            5799999999999999 5789999987653111                                     0124567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~-~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.+++    +..-|.+-.++  .....+|||||++|++|.++.... ...++...+....  +...+..+|..|++|+|+
T Consensus        62 l~~l~----HpnIv~~~g~~--~~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDi  135 (272)
T d1qpca_          62 MKQLQ----HQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDL  135 (272)
T ss_dssp             HHHCC----CTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHhCC----CCCEeEEEeee--ccCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCcc
Confidence            76652    32233333322  234569999999999998854322 2234444333332  333488899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+++.....     .....+...+++++++..+..++..|+++++-.+.+++
T Consensus       136 Kp~NIll~~--~~~~Kl~DFGla~~~~~~~~~~-----~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ell  204 (272)
T d1qpca_         136 RAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV  204 (272)
T ss_dssp             SGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             chhheeeec--ccceeeccccceEEccCCcccc-----ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHH
Confidence            999999985  8899999999999876532111     01124566788899888777778889999998877665

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-17  Score=174.47  Aligned_cols=187  Identities=13%  Similarity=0.152  Sum_probs=123.8

Q ss_pred             cccccccccEEEEEEEC--C----eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G----~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|+||.||+|+++  +    ..||||+.+++..+.                                   ....+.
T Consensus        13 ~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~-----------------------------------~~~~~~   57 (283)
T d1mqba_          13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK-----------------------------------QRVDFL   57 (283)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHH-----------------------------------HHHHHH
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChH-----------------------------------HHHHHH
Confidence            67999999999999983  2    479999987643221                                   112345


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|++.+.++    .|.+-|.+-.++ ......+++|||++|..+.+........++...+...+  +...++.+|..|++
T Consensus        58 ~E~~il~~l----~H~nIv~~~g~~-~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~ii  132 (283)
T d1mqba_          58 GEAGIMGQF----SHHNIIRLEGVI-SKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYV  132 (283)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEE-CSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhc----CCCCEeeeeEEE-ecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccc
Confidence            677666655    233333333333 33456799999999999988654443445554443333  33458899999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||+|||++.  ++.++|+|||+++.+.........   .....+++.+++++.+..+..++..|+++++-.+.+++
T Consensus       133 HrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~  207 (283)
T d1mqba_         133 HRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEATYT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  207 (283)
T ss_dssp             CSCCCGGGEEECT--TCCEEECCCCC--------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCccccceEEECC--CCeEEEcccchhhcccCCCccceE---eccCCCCccccCHHHHccCCCCCcccccccHHHHHHHH
Confidence            9999999999985  889999999999887664332221   11234677889999998888888899999998877664

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=5.9e-18  Score=183.00  Aligned_cols=186  Identities=16%  Similarity=0.161  Sum_probs=125.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+..+.-.   ..                              .+....+.+|..
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~---~~------------------------------~~~~~~~~~e~~   56 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI---KM------------------------------KQGETLALNERI   56 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH---HH------------------------------HTCHHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHc---ch------------------------------hhHHHHHHHHHH
Confidence            6899999999999998  599999998754100   00                              000111223333


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaD  453 (760)
                      .+..++ .+ ++++| .+-.++ +.....+|||||++|++|.++.... .......+....  +-..+..+|..|++|+|
T Consensus        57 ~~~~l~-~~-~hpnIv~l~~~~-~~~~~~~ivmE~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrD  132 (364)
T d1omwa3          57 MLSLVS-TG-DCPFIVCMSYAF-HTPDKLSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHNRFVVYRD  132 (364)
T ss_dssp             HHHHHS-SS-CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHHh-cC-CCCcEEEEEEEE-EECCEEEEEEEecCCCcHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHCCcccee
Confidence            333332 22 23332 232322 3445679999999999999875432 223333332222  33458889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~-~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.|||++.  +|.++|+|||++..++....        ....+++.+++++++.-+. .++.+|+++++-.+++++.
T Consensus       133 lKP~NILl~~--~g~iKl~DFGla~~~~~~~~--------~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemlt  201 (364)
T d1omwa3         133 LKPANILLDE--HGHVRISDLGLACDFSKKKP--------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR  201 (364)
T ss_dssp             CSGGGEEECS--SSCEEECCCTTCEECSSSCC--------CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             eccceeEEcC--CCcEEEeeeceeeecCCCcc--------cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHh
Confidence            9999999985  89999999999998876432        1235889999999986553 5677899999988887764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=174.89  Aligned_cols=182  Identities=15%  Similarity=0.131  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|+||+||+|++ +++.||||+.+.+-..                                     .+.+.+|+..
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~-------------------------------------~~~~~~E~~~   65 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------PEAFLQEAQV   65 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-------------------------------------HHHHHHHHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECcccCC-------------------------------------HHHHHHHHHH
Confidence            6899999999999999 5788999997653110                                     0234567777


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      +.+++    +.+-|.+-..+  ...+.++||||++|+++.++..... ..++...+....  +...+..+|..|++|+|+
T Consensus        66 l~~l~----h~nIv~~~g~~--~~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~Dl  139 (285)
T d1fmka3          66 MKKLR----HEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL  139 (285)
T ss_dssp             HHHCC----CTTBCCEEEEE--CSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHhcc----cCCEeEEEEEE--ecCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence            77652    22233333322  3456799999999999888654332 234544443333  334588899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.|||++.  ++.++|+|||++..+.+.....     .....+.+.+++++.+.-+..++..|++++.-.+.+++
T Consensus       140 Kp~NIll~~--~~~~kl~DfGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~  208 (285)
T d1fmka3         140 RAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELT  208 (285)
T ss_dssp             SGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEECC--CCcEEEcccchhhhccCCCcee-----eccccccccccChHHHhCCCCCcHHhhhcchHHHHHHH
Confidence            999999986  7899999999998775443221     11234677888899888888888899999998877665

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.9e-18  Score=174.42  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=130.4

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|+||.||+|++ ++++||||+.+.+-..                                     .+.+.+|...
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~-------------------------------------~~~~~~Ev~~   52 (258)
T d1k2pa_          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------EDEFIEEAKV   52 (258)
T ss_dssp             CCCCEETTEEEEEEEETTTEEEEEEEEESSSSC-------------------------------------HHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCEEEEEEECcCcCC-------------------------------------HHHHHHHHHH
Confidence            5899999999999999 6889999998763111                                     0123456666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      +.++    .|.+-+.+-.++ ......++||||++|+++.++........+...+....  +...+..+|..|++|+|+|
T Consensus        53 ~~~l----~HpnIv~~~g~~-~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk  127 (258)
T d1k2pa_          53 MMNL----SHEKLVQLYGVC-TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA  127 (258)
T ss_dssp             HHTC----CCTTBCCEEEEE-CCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCS
T ss_pred             HHhc----CCCceeeEEEEE-eeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence            6655    233334443433 33466799999999999988765554455544443332  3345888999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++|+|||++..+.+......     ....++..+++++++..+..++.+|++++.-.+.+++
T Consensus       128 ~~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~  195 (258)
T d1k2pa_         128 ARNCLVND--QGVVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY  195 (258)
T ss_dssp             GGGEEECT--TCCEEECCCSSCCBCSSSSCCCC-----CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEcC--CCcEEECcchhheeccCCCceee-----cccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHH
Confidence            99999985  78999999999987765433211     0123566788899888887788899999998776654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.7e-18  Score=183.97  Aligned_cols=185  Identities=15%  Similarity=0.135  Sum_probs=128.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+....                ..                 .+....+.+|..
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~----------------~~-----------------~~~~~~~~~E~~   57 (337)
T d1o6la_          11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVI----------------IA-----------------KDEVAHTVTESR   57 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH----------------HH-----------------TTCHHHHHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEchhhc----------------cC-----------------HHHHHHHHHHHH
Confidence            6899999999999998  699999999754100                00                 001123445666


Q ss_pred             HHHHHHHhcCCCCce-eeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V-~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++     ++++| .+-.++ +.....++||||++|+.|.++.... ..++...+...  -+-..+..+|..|++|||
T Consensus        58 il~~l-----~hp~Iv~l~~~~-~~~~~~~iv~ey~~gg~L~~~~~~~-~~~~e~~~~~~~~qil~al~ylH~~~iiHRD  130 (337)
T d1o6la_          58 VLQNT-----RHPFLTALKYAF-QTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRDVVYRD  130 (337)
T ss_dssp             HHHSC-----CCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred             HHHhC-----CCCCEEEEEeee-ccccccccceeccCCCchhhhhhcc-cCCcHHHHHHHHHHHhhhhhhhhhcCccccc
Confidence            65544     23332 222223 3345679999999999998865432 23333322222  122457889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||.|||++.  +|.++|+|||++..+......      .....+++.+++++++.-...++.+|+++++-.+++++.
T Consensus       131 lKP~NILl~~--~g~vkl~DFG~a~~~~~~~~~------~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~  200 (337)
T d1o6la_         131 IKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  200 (337)
T ss_dssp             CCGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             cCHHHeEecC--CCCEEEeecccccccccCCcc------cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHH
Confidence            9999999986  899999999999877543211      112357899999999887777888999999988877764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-18  Score=179.88  Aligned_cols=193  Identities=14%  Similarity=0.063  Sum_probs=128.8

Q ss_pred             hhhhhcccCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHH
Q 004334          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (760)
Q Consensus       289 ~~~iF~~fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E  366 (760)
                      .+.-|-.|++ .||.|+||.||+|++  +|+.||||+....-..                                  +.
T Consensus         6 ~~gry~~~~~-~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~----------------------------------~~   50 (270)
T d1t4ha_           6 NDGRFLKFDI-EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT----------------------------------KS   50 (270)
T ss_dssp             TTSCEEEEEE-EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------HH
T ss_pred             CCCCEEEeee-EEecCcCcEEEEEEECCCCeEEEEEEEchhhCC----------------------------------HH
Confidence            3344444543 599999999999999  5899999986542100                                  01


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004334          367 CASVLYQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       367 ~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L  441 (760)
                      ..+.+.+|++.+.++    .|..-|.+-.++....   ...+|||||++|++|.++.... ..++...+....  +-..+
T Consensus        51 ~~~~~~~E~~il~~l----~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~gl  125 (270)
T d1t4ha_          51 ERQRFKEEAEMLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGL  125 (270)
T ss_dssp             HHHHHHHHHHHHTTC----CCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC----CCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhcc-ccccHHHHHHHHHHHHHHH
Confidence            122355677666554    3333334434333221   2358999999999999876422 234433332222  23347


Q ss_pred             HHHHhCC--ccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCh
Q 004334          442 EQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  519 (760)
Q Consensus       442 ~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~  519 (760)
                      ..+|..|  ++|+|+||+|||+++ +++.++|+|||++.........        -..+++.++++++..-. .++..|+
T Consensus       126 ~yLH~~~~~IiHrDiKp~NILl~~-~~~~~Kl~DFGla~~~~~~~~~--------~~~GT~~Y~aPE~~~~~-~~~~~DI  195 (270)
T d1t4ha_         126 QFLHTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAK--------AVIGTPEFMAPEMYEEK-YDESVDV  195 (270)
T ss_dssp             HHHHTSSSCCCCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBE--------ESCSSCCCCCGGGGGTC-CCTHHHH
T ss_pred             HHHHHCCCCEEeCCcChhhceeeC-CCCCEEEeecCcceeccCCccC--------CcccCccccCHHHhCCC-CCCcCch
Confidence            7899998  999999999999964 4689999999999766544321        12467888899887644 6778899


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++++-.+.+++.
T Consensus       196 wSlGvilyel~~  207 (270)
T d1t4ha_         196 YAFGMCMLEMAT  207 (270)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999988877664

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.8e-18  Score=175.71  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=117.6

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||+||+|+.       +|+.||||+.+.+....                                   ..+.+
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------------~~~~~   63 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-----------------------------------EHRAL   63 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHH-----------------------------------HHHHH
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcH-----------------------------------HHHHH
Confidence            6899999999999997       25789999876532111                                   01122


Q ss_pred             HHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc---------------CCCHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------GVDRKRLGRY  435 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~---------------g~d~~~la~~  435 (760)
                      .+|...+.++    .+++. +..-..+.+-....+++|||++|++|.++......               .++...+...
T Consensus        64 ~~e~~~l~~~----~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  139 (299)
T d1ywna1          64 MSELKILIHI----GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICY  139 (299)
T ss_dssp             HHHHHHHHHH----CCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHH
T ss_pred             HHHHHHHHhh----cCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHH
Confidence            3344444443    23333 23333333333457999999999999997643221               1333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004334          436 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  513 (760)
Q Consensus       436 l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~  513 (760)
                      +  +...+..+|.+|++|+|+||.|||++.  ++.++|+|||+++.+........    .....+++.+++++++.-+..
T Consensus       140 ~~qi~~gl~ylH~~~ivHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~l~~~~~  213 (299)
T d1ywna1         140 SFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPETIFDRVY  213 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEECG--GGCEEECC------CCSCTTSCC----TTSCCCGGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCCcCCcCCccceeECC--CCcEEEccCcchhhccccccccc----cCceeeCccccchhHhhcCCC
Confidence            2  334478899999999999999999986  78999999999987654322110    111246678899998888877


Q ss_pred             CCCCChHHHHHHHHHHH
Q 004334          514 VPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       514 ~~~~D~~al~~~~~~~l  530 (760)
                      ++..|+++++-.+.+++
T Consensus       214 ~~~sDiwS~Gvil~ell  230 (299)
T d1ywna1         214 TIQSDVWSFGVLLWEIF  230 (299)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CcccceeehHHHHHHHH
Confidence            88889999998877665

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-18  Score=175.87  Aligned_cols=190  Identities=16%  Similarity=0.158  Sum_probs=130.9

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|+||.||+|+.  +|+.||||+........                    .  ...        ...+.+.+|++
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~--------------------~--~~~--------~~~~~~~~E~~   65 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS--------------------S--RRG--------VSREDIEREVS   65 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT--------------------C--SSS--------BCHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcch--------------------h--hhh--------HHHHHHHHHHH
Confidence            6799999999999998  59999999876531110                    0  000        01123556777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.++.    |..-|.+-.++ +.....+|||||++|++|.++.... ..++...+...+  +-..+..+|..|++|+|+
T Consensus        66 il~~l~----HpnIv~~~~~~-~~~~~~~iv~E~~~gg~L~~~i~~~-~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDi  139 (293)
T d1jksa_          66 ILKEIQ----HPNVITLHEVY-ENKTDVILILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHSLQIAHFDL  139 (293)
T ss_dssp             HHHHCC----CTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHhCC----CCCCCcEEEEE-EECCEEEEEEEcCCCccccchhccc-cccchhHHHHHHHHHHHHHHhhhhcceeeccc
Confidence            777662    32223333333 3456679999999999999876432 234544433322  223488899999999999


Q ss_pred             CCCcEEEeccC--CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~--~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.||+++..+  ...++++|||++..++.....       ....+++.+++++++..+..++..|+++++-.+.+++.
T Consensus       140 Kp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~-------~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~  211 (293)
T d1jksa_         140 KPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS  211 (293)
T ss_dssp             SGGGEEESCSSSSSCCEEECCCTTCEECTTSCBC-------SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEecCCCcccceEecchhhhhhcCCCccc-------cccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHc
Confidence            99999997521  126999999999988654321       11346788999999987777888999999988877654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-17  Score=176.12  Aligned_cols=187  Identities=18%  Similarity=0.150  Sum_probs=127.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+++....   +                             ++.. .+..|..
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~---~-----------------------------~~~~-~~~~e~~   54 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM---D-----------------------------DDVE-CTMVEKR   54 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH---T-----------------------------TCHH-HHHHHHH
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhccC---h-----------------------------HHHH-HHHHHHH
Confidence            6899999999999999  69999999986521000   0                             0011 1122322


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+.+   .+.+..-|.+-.++ ......+|||||++|++|.++... ...++...+....  +-..++.+|.+|++|+|+
T Consensus        55 ~l~~---~~~hp~Iv~~~~~~-~~~~~~yivmEy~~~g~L~~~i~~-~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDi  129 (320)
T d1xjda_          55 VLSL---AWEHPFLTHMFCTF-QTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKGIVYRDL  129 (320)
T ss_dssp             HHHH---HTTCTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHH---hCCCCcEEEEEEEE-ccCCceeEEEeecCCCcHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            2221   22222223333332 345567999999999999997643 2234443333322  334588899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||.|||+++  +|+++|+|||++..+.......      ....+.+.+++++++..+..++.+|+++++-.+.+++.
T Consensus       130 kp~NiL~~~--~~~~kl~DFG~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemlt  198 (320)
T d1xjda_         130 KLDNILLDK--DGHIKIADFGMCKENMLGDAKT------NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI  198 (320)
T ss_dssp             CGGGEEECT--TSCEEECCCTTCBCCCCTTCCB------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             cccceeecC--CCceeccccchhhhcccccccc------cccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHh
Confidence            999999985  8899999999998776432211      12346788999999988888888999999988877764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.4e-17  Score=168.42  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=119.5

Q ss_pred             cccccccccEEEEEEEC-----CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-----G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +.||.|+||+||+|++.     +..||||+.++...+                                   .....+.+
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~-----------------------------------~~~~~~~~   57 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSD-----------------------------------SVREKFLQ   57 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSH-----------------------------------HHHHHHHH
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCH-----------------------------------HHHHHHHH
Confidence            68999999999999982     356888887653211                                   11223556


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffH  451 (760)
                      |+..+.++    .|..-|.+-.++  ..+..++||||++|+.+.++.......++...+...+  +...+..+|..|++|
T Consensus        58 E~~~l~~l----~HpnIv~l~~~~--~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiH  131 (273)
T d1mp8a_          58 EALTMRQF----DHPHIVKLIGVI--TENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH  131 (273)
T ss_dssp             HHHHHHTC----CCTTBCCEEEEE--CSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhC----CCCCEeeEEEEE--ecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeec
Confidence            77776655    232233333333  2356799999999999988755444455555444333  233488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++++|||++..++......     .....+.+.+++++.+.-+..++.+|+++++-.+.+++
T Consensus       132 rDlKp~NIll~~--~~~~Kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~l  203 (273)
T d1mp8a_         132 RDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL  203 (273)
T ss_dssp             SCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred             cccchhheeecC--CCcEEEccchhheeccCCccee-----ccceecCcccchhhHhccCCCCCccccccchHHHHHHH
Confidence            999999999986  7899999999998876543221     11224567889999988888888889999998877665

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=175.85  Aligned_cols=186  Identities=16%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             cccccccccEEEEEEEC--C-----eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~--G-----~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||+|+||+||+|+..  +     ..||||+..+.....                                   ....+
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~   87 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS-----------------------------------EREAL   87 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-----------------------------------------CHHH
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHH-----------------------------------HHHHH
Confidence            58999999999999982  2     369999876632110                                   11234


Q ss_pred             HHHHHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhhhc----------------------CCC
Q 004334          372 YQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL----------------------GVD  428 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~----------------------g~d  428 (760)
                      .+|...+.++.    ++++ |.+-.++ ......+|||||++|++|.++......                      .++
T Consensus        88 ~~E~~~l~~l~----~HpnIv~l~~~~-~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  162 (325)
T d1rjba_          88 MSELKMMTQLG----SHENIVNLLGAC-TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLT  162 (325)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CC
T ss_pred             HHHHHHHHHhc----CCCcEeEEEEEE-eeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCC
Confidence            55666666552    2333 3333322 345667999999999999997643221                      123


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          429 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       429 ~~~la~~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      ...+....  +...+..+|..|++|||+||.||+++.  ++.++|+|||+++..........    ..-..+.+.+++++
T Consensus       163 ~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~aPE  236 (325)
T d1rjba_         163 FEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYVV----RGNARLPVKWMAPE  236 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSEE----ETTEEECGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCchhcccccc--CCeEEEeeccccccccCCCceee----eccccCCCccCChH
Confidence            23322222  234588899999999999999999986  89999999999987655432110    11123577899999


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ++.-+..++.+|+++++-.+.+++
T Consensus       237 ~l~~~~~~~~~DiwS~Gvil~eml  260 (325)
T d1rjba_         237 SLFEGIYTIKSDVWSYGILLWEIF  260 (325)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCcceeccchhHHHHHHH
Confidence            888888888899999998877664

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-17  Score=175.15  Aligned_cols=187  Identities=17%  Similarity=0.108  Sum_probs=122.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|+.  +|+.||||+.+.......                               -+.....+.+|+.
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~-------------------------------~~~~~~~~~~Ei~   52 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEA-------------------------------KDGINRTALREIK   52 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------CTHHHHHHH
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhh-------------------------------hHHHHHHHHHHHH
Confidence            4699999999999998  599999998755311100                               0112233556776


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~---~~la~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++    .+..-|.+-.++ ...+..+|||||++|..+..+... ...++.   ..++..+ -..++.+|..|++|+|
T Consensus        53 il~~l----~hpnIv~~~~~~-~~~~~~~ivmE~~~~~~~~~~~~~-~~~l~~~~~~~~~~qi-l~aL~~lH~~~iiHrD  125 (299)
T d1ua2a_          53 LLQEL----SHPNIIGLLDAF-GHKSNISLVFDFMETDLEVIIKDN-SLVLTPSHIKAYMLMT-LQGLEYLHQHWILHRD  125 (299)
T ss_dssp             HHHHC----CCTTBCCEEEEE-CCTTCCEEEEECCSEEHHHHHTTC-CSSCCSSHHHHHHHHH-HHHHHHHHHTTCCCCC
T ss_pred             HHHhC----CCCCEeEEEeee-ccCCceeehhhhhcchHHhhhhhc-ccCCCHHHHHHHHHHH-HHHHHHhhccceeccc
Confidence            66665    233334443333 345667999999999877665432 122222   2333333 3458889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      +||+|||++.  ++.++|+|||++..++......      ....+++.+++++++..+ ..+...|+++++-.+.+++.
T Consensus       126 iKp~NIli~~--~~~~KL~DFG~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~  196 (299)
T d1ua2a_         126 LKPNNLLLDE--NGVLKLADFGLAKSFGSPNRAY------THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLL  196 (299)
T ss_dssp             CCGGGEEECT--TCCEEECCCGGGSTTTSCCCCC------CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEecC--CCccccccCccccccCCCcccc------cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHh
Confidence            9999999985  8999999999998876543211      011356778888887644 34667899999988777653

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=1.6e-17  Score=173.70  Aligned_cols=190  Identities=15%  Similarity=0.149  Sum_probs=125.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|+||+||+|+.  +|+.||||+.......                              .        .+.+|.+
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~------------------------------~--------~~~~e~~   52 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA------------------------------P--------QLRDEYR   52 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS------------------------------C--------CHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEccccCc------------------------------H--------HHHHHHH
Confidence            5899999999999998  6999999986442110                              0        1233444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDp  454 (760)
                      .+..+.    +.+++..-.-+.......++||||+ |.+|.++................+  +...++.+|..|++|+|+
T Consensus        53 ~~~~l~----~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDi  127 (293)
T d1csna_          53 TYKLLA----GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDI  127 (293)
T ss_dssp             HHHHTT----TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCC
T ss_pred             HHHHhc----CCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccC
Confidence            444442    3333322233345566789999999 667777654433345544433332  234488999999999999


Q ss_pred             CCCcEEEecc---CCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       455 HPGNILV~~~---~~g~l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      ||.||+++..   .++.++++|||++..+.+........ .......+++.+++++.......++..|++++.-.+.+++
T Consensus       128 Kp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~ell  207 (293)
T d1csna_         128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFL  207 (293)
T ss_dssp             CGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHH
Confidence            9999999631   35789999999998765432110000 0011134788899999887766677789999998877765


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       208 t  208 (293)
T d1csna_         208 R  208 (293)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.7e-17  Score=171.48  Aligned_cols=186  Identities=16%  Similarity=0.057  Sum_probs=128.4

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||+|+||.||+|+..       |+.||||+.++...+.                                   ....+
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------~~~~~   63 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-----------------------------------MQADF   63 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHH-----------------------------------HHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChH-----------------------------------HHHHH
Confidence            57999999999999973       4789999876643221                                   12234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-----------------------cCCC
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------------LGVD  428 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-----------------------~g~d  428 (760)
                      .+|+..+.++    . ++++.-..-+.......+++|||+++++|.++.....                       ..++
T Consensus        64 ~~E~~il~~l----~-h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  138 (301)
T d1lufa_          64 QREAALMAEF----D-NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS  138 (301)
T ss_dssp             HHHHHHHHTC----C-CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCC
T ss_pred             HHHHHHHHhc----C-CCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCC
Confidence            5676666654    2 3333222233345567899999999999998754211                       0122


Q ss_pred             HHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004334          429 RKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  506 (760)
Q Consensus       429 ~~~la~~--lv~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~  506 (760)
                      .......  .+...++.+|..|++|+|+||.|||++.  ++.++|+|||++..+.+......    .....+.+.+++++
T Consensus       139 ~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~--~~~~Kl~DFGls~~~~~~~~~~~----~~~~~~~~~y~aPE  212 (301)
T d1lufa_         139 CAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPIRWMPPE  212 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECC--CCcEEEccchhheeccCCccccc----cCCCCcCcCcCCHH
Confidence            2222221  2334578899999999999999999986  78999999999987765543221    12234567889999


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHHH
Q 004334          507 MVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       507 l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +...+..++..|+++++-.+.+++
T Consensus       213 ~~~~~~~t~ksDVwS~Gvvl~ell  236 (301)
T d1lufa_         213 SIFYNRYTTESDVWAYGVVLWEIF  236 (301)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHccCCCChhhhhccchhhHHHHH
Confidence            988888888899999998877664

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.6e-17  Score=168.93  Aligned_cols=179  Identities=15%  Similarity=0.150  Sum_probs=119.1

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|.||+|+++|+.||||+.+..-                                      ..+.+.+|++.+
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~--------------------------------------~~~~~~~E~~~l   54 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--------------------------------------TAQAFLAEASVM   54 (262)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------HHHHHTHHHH
T ss_pred             EEEecCCCeEEEEEEECCeEEEEEEECcHH--------------------------------------HHHHHHHHHHHH
Confidence            579999999999999999999999875421                                      011234566555


Q ss_pred             HHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHH--HHHHHHHHHHhCCccccCCC
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY--AVESYLEQILSHGFFHADPH  455 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~--lv~~~L~qI~~~GffHaDpH  455 (760)
                      .++    .+..-+.+-.++.+.....+|||||++|++|.++..... ..++...+...  .+...+..+|..+++|+|+|
T Consensus        55 ~~l----~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlk  130 (262)
T d1byga_          55 TQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA  130 (262)
T ss_dssp             TTC----CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             HhC----CCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccc
Confidence            544    232223333333233345699999999999999764322 22343333322  23345788999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.||+++.  ++.++++|||+++..++....         ..++..+++++.+.-+..++..|+++++-.+.+++
T Consensus       131 p~Nil~~~--~~~~kl~dfg~s~~~~~~~~~---------~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~  194 (262)
T d1byga_         131 ARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  194 (262)
T ss_dssp             GGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hHhheecC--CCCEeecccccceecCCCCcc---------ccccccCCChHHHhCCCCChHHHHHhHHHHHHHHH
Confidence            99999986  889999999999877654321         23566778888887777888899999998887765

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.66  E-value=1.4e-16  Score=168.46  Aligned_cols=177  Identities=16%  Similarity=0.176  Sum_probs=119.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||+||+|+.  +|+.||||+.++.-.+                                       .+.+|+.
T Consensus        41 ~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---------------------------------------~~~~Ei~   81 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK---------------------------------------KIKREIK   81 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSSCHH---------------------------------------HHHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEECHHHHH---------------------------------------HHHHHHH
Confidence            6899999999999998  5999999998763221                                       2344555


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeec-cCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e-~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+..+.    ++++ +.+-.++.. .....++||||++|..|.++..    .++...+...+  +-..|..+|.+|++|+
T Consensus        82 il~~l~----~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~----~l~e~~i~~i~~qil~aL~~LH~~gIvHr  153 (328)
T d3bqca1          82 ILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHSMGIMHR  153 (328)
T ss_dssp             HHHHHT----TSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT----SCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHhcc----CCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc----CCCHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            555552    2232 333333322 2345799999999999877532    23333332222  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l  530 (760)
                      |+||+|||++. .++.++++|||++..+.+....       ....++..+++++..... ..+...|++++.-.+.+++
T Consensus       154 DiKp~NILi~~-~~~~vkl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~  224 (328)
T d3bqca1         154 DVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMI  224 (328)
T ss_dssp             CCSGGGEEEET-TTTEEEECCGGGCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred             cccccceEEcC-CCCeeeecccccceeccCCCcc-------cccccCccccCcccccCCCCCCcccchhhhhhhhHHhc
Confidence            99999999985 3457999999999887654321       112345666777776543 2456679999887766554

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-17  Score=172.05  Aligned_cols=186  Identities=18%  Similarity=0.168  Sum_probs=122.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  .....+.+|.+
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~~~~~Ei~   53 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GVPSTAIREIS   53 (298)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEC-----------------------------------------CCHHHHHHHH
T ss_pred             cEEecCcCeEEEEEEECCCCCEEEEEEEehhhcCh----------------------------------HHHHHHHHHHH
Confidence            6799999999999998  59999999876521100                                  01123445666


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+.++    .+..-|.+-..+ ...+..++||||++|..+.........+++...+.....  -..++.+|..|++|||+
T Consensus        54 il~~l----~Hp~Iv~~~~~~-~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDi  128 (298)
T d1gz8a_          54 LLKEL----NHPNIVKLLDVI-HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDL  128 (298)
T ss_dssp             HHTTC----CCTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHHhC----CCCcEEEecccc-ccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEcccc
Confidence            66544    233233333333 345677999999998755544333344455554444332  23478899999999999


Q ss_pred             CCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||++.  ++.++++|||++.........      .....+.+.++++++.... ..+..+|+++++..+.+++.
T Consensus       129 KpeNIl~~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~  198 (298)
T d1gz8a_         129 KPQNLLINT--EGAIKLADFGLARAFGVPVRT------YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT  198 (298)
T ss_dssp             CGGGEEECT--TSCEEECSTTHHHHHCCCSBC------TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             Cchheeecc--cCcceeccCCcceeccCCccc------ceeecccceeeehhhhccccCCCccccccccchhhhHHhh
Confidence            999999985  789999999999776543211      0112456777777776554 44667899999988776654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-17  Score=169.59  Aligned_cols=188  Identities=18%  Similarity=0.191  Sum_probs=120.3

Q ss_pred             cccccccccEEEEEEEC---C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      +-||.|+||+||+|+++   +  ..||||+..+.....                                 ++..+.+.+
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~---------------------------------~~~~~~~~~   60 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PEAMDDFIR   60 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC---------------------------------HHHHHHHHH
Confidence            46999999999999972   3  479999876532110                                 112234566


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccc
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFH  451 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffH  451 (760)
                      |+..+.++    .|..-|.+-.++  .....++||||++|+.+.+........+....+...+.+  ..+..+|..|++|
T Consensus        61 Ei~~l~~l----~H~nIv~~~g~~--~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiH  134 (273)
T d1u46a_          61 EVNAMHSL----DHRNLIRLYGVV--LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH  134 (273)
T ss_dssp             HHHHHHHC----CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHhC----CCCCEEEEEEEE--eecchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEee
Confidence            77666665    232223333333  234569999999999998866544444555555444333  4488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      +|+||.||+++.  ++.++|+|||++..+.........   .....+...+++++++.-+..++.+|+++++-.+.+++
T Consensus       135 rDikp~NIll~~--~~~vkl~DfGl~~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~eml  208 (273)
T d1u46a_         135 RDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMF  208 (273)
T ss_dssp             SCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHhcccc--ccceeeccchhhhhcccCCCccee---cCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHH
Confidence            999999999986  789999999999988654322111   11122455677888888777777889999998877665

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=168.75  Aligned_cols=185  Identities=14%  Similarity=0.114  Sum_probs=126.3

Q ss_pred             cccccccccEEEEEEE--CCe----eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~----~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~  372 (760)
                      +.||.|+||+||+|++  +|+    +||||..++.....                                   ..+.+.
T Consensus        15 ~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~~~~   59 (317)
T d1xkka_          15 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------ANKEIL   59 (317)
T ss_dssp             EEEEECSSEEEEEEEECC----CCEEEEEEEECC----C-----------------------------------THHHHH
T ss_pred             eEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHH-----------------------------------HHHHHH
Confidence            6899999999999998  454    68888776532111                                   112345


Q ss_pred             HHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          373 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       373 ~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      +|++.+.++    .|..-|.+-.++  .....+++|||+.|+.+.+........++...+....  +...+..+|.+|++
T Consensus        60 ~E~~~l~~l----~HpnIv~l~g~~--~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ii  133 (317)
T d1xkka_          60 DEAYVMASV----DNPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLV  133 (317)
T ss_dssp             HHHHHHHHC----CCTTBCCEEEEE--ESSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhC----CCCCEeeEEEEE--ecCCeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            677777665    233333333333  2456789999999999988655444445544443332  33458889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |+|+||.||+++.  ++.++|+|||++..+..........    ...+++.+++++.+.-+..++..|+++++-.+.+++
T Consensus       134 HrDlKp~NIll~~--~~~~kl~DFGla~~~~~~~~~~~~~----~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~  207 (317)
T d1xkka_         134 HRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHAE----GGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM  207 (317)
T ss_dssp             CSCCCGGGEEEEE--TTEEEECCCSHHHHTTTTCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhcceeCC--CCCeEeeccccceeccccccccccc----ccccCccccChHHHhcCCCChhhhhhhHHHHHHHHH
Confidence            9999999999986  8899999999998876544332211    124677889999888888888899999998877665

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-17  Score=178.43  Aligned_cols=188  Identities=11%  Similarity=0.071  Sum_probs=124.2

Q ss_pred             hhcccC--ccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHH
Q 004334          292 VFERFD--VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (760)
Q Consensus       292 iF~~fd--~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~  367 (760)
                      +.+.|.  .+.||.|++|.||+|+.  +|+.||||+.+..  +                                     
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--~-------------------------------------   49 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--P-------------------------------------   49 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--H-------------------------------------
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--H-------------------------------------
Confidence            344454  24699999999999998  6999999987531  1                                     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeeceeeecc---CCCeEEEEeecCCCchhhhhhhhh-cCCCHHHHHHHH--HHHHH
Q 004334          368 ASVLYQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       368 ~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~---st~~vLVME~ieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~L  441 (760)
                        .+.+|...+.++   ..+..-|.+-.+|...   .+..+||||||+|++|.++..... ..++...+...+  +-..+
T Consensus        50 --~~~~E~~~~~~~---~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al  124 (335)
T d2ozaa1          50 --KARREVELHWRA---SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI  124 (335)
T ss_dssp             --HHHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHh---cCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHH
Confidence              112344433333   1122224444444321   234699999999999999764321 234443333332  22347


Q ss_pred             HHHHhCCccccCCCCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      ..+|..|++|||+||+|||++.. +++.++|+|||++..+......       ....+++.+++++++.-...++..|++
T Consensus       125 ~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~y~~~~Diw  197 (335)
T d2ozaa1         125 QYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPEKYDKSCDMW  197 (335)
T ss_dssp             HHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCC-------CCCSCCCSSCCCCCCCGGGGSHHHHHH
T ss_pred             HHHHHcCCccccccccccccccccccccccccccceeeeccCCCcc-------ccccCCcccCCcHHHcCCCCCHHHHHH
Confidence            88999999999999999999742 2467999999999887654321       113467777888776555556678999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      +++-.+++++
T Consensus       198 SlGvily~ll  207 (335)
T d2ozaa1         198 SLGVIMYILL  207 (335)
T ss_dssp             HHHHHHHHHT
T ss_pred             hhchhHHHHh
Confidence            9998777665

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=168.57  Aligned_cols=198  Identities=14%  Similarity=0.103  Sum_probs=131.4

Q ss_pred             hhhhhcccCccccccccccEEEEEEE-C--C--eeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHH
Q 004334          289 LDDVFERFDVEPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (760)
Q Consensus       289 ~~~iF~~fd~~PIasaSiGQVhrA~l-~--G--~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i  363 (760)
                      .+...-.|+ +.||.|+||.||+|++ +  |  ..||||+.+.....                                 
T Consensus        24 ~~~~~~~~~-~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~---------------------------------   69 (311)
T d1r0pa_          24 PSSLIVHFN-EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDI---------------------------------   69 (311)
T ss_dssp             GGGEEEEEE-EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCH---------------------------------
T ss_pred             hHHceeccc-eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCH---------------------------------
Confidence            334433454 5699999999999998 2  2  36899986542111                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004334          364 YDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       364 ~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L  441 (760)
                        .....+.+|++.+.++    .|..-|.+-....+.....++||||++|+++.++........+........  +...+
T Consensus        70 --~~~~~~~~E~~~l~~l----~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL  143 (311)
T d1r0pa_          70 --GEVSQFLTEGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM  143 (311)
T ss_dssp             --HHHHHHHHHHHHHHTC----CCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhC----CCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhh
Confidence              1123356677766655    233333333333233456799999999999999765544444444333222  22337


Q ss_pred             HHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHH
Q 004334          442 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  521 (760)
Q Consensus       442 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~a  521 (760)
                      ..+|..|++|+|+||.|||++.  ++.++|+|||++..+.........  ...-..+...+++++....+..++..|+++
T Consensus       144 ~~lH~~~iiHrDLK~~NILl~~--~~~~kL~DFG~~~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S  219 (311)
T d1r0pa_         144 KFLASKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVH--NKTGAKLPVKWMALESLQTQKFTTKSDVWS  219 (311)
T ss_dssp             HHHHHTTCCCSCCSGGGEEECT--TCCEEECSSGGGCCTTTTTCCCTT--CTTCSSCCGGGSCHHHHHHCCCCHHHHHHH
T ss_pred             hhhcccCcccCCccHHhEeECC--CCCEEEecccchhhccccccccce--ecccccccccccChHHHhcCCCCChhHhhh
Confidence            7899999999999999999985  789999999999887654321110  011123566788888888888888889999


Q ss_pred             HHHHHHHHH
Q 004334          522 VRRTAQFFL  530 (760)
Q Consensus       522 l~~~~~~~l  530 (760)
                      ++-.+.+++
T Consensus       220 fGivl~El~  228 (311)
T d1r0pa_         220 FGVLLWELM  228 (311)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            998877665

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5e-17  Score=169.73  Aligned_cols=190  Identities=16%  Similarity=0.088  Sum_probs=124.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|++  +|+.||||+.+..-...                                      .+..|++
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------~~~~E~~   54 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------QLHIESK   54 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSC--------------------------------------CHHHHHH
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCH--------------------------------------HHHHHHH
Confidence            5799999999999998  59999999876531110                                      1234444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADP  454 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~~GffHaDp  454 (760)
                      .+..+    .+.+.|.....+.......++||||++|. +.+........++...+.....  -..++.+|..|++|||+
T Consensus        55 i~~~l----~~~~~i~~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDi  129 (299)
T d1ckia_          55 IYKMM----QGGVGIPTIRWCGAEGDYNVMVMELLGPS-LEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDV  129 (299)
T ss_dssp             HHHHS----TTSTTCCCEEEEEEETTEEEEEEECCCCB-HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             HHHHc----cCCCcccEEEEEEecCCEEEEEEEEcCCc-hhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccC
Confidence            44443    34444444444445566789999999665 4443333333455555444332  23488899999999999


Q ss_pred             CCCcEEEecc-CCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Q 004334          455 HPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       455 HPGNILV~~~-~~g~l~LiDFG~v~~l~~~~r~~l~~-l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~l~  531 (760)
                      ||+|||+... .+..++++|||++..+.......... .-.....+++.+++++...-...++..|++++.-.+.+++.
T Consensus       130 Kp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~t  208 (299)
T d1ckia_         130 KPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL  208 (299)
T ss_dssp             CGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHh
Confidence            9999998631 24579999999999875432110000 00011246778888888876666778899999987766653

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=165.49  Aligned_cols=187  Identities=16%  Similarity=0.112  Sum_probs=128.9

Q ss_pred             cccccccccEEEEEEE-------CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-------~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||+|+||.||+|++       +++.||||+.+++-...                                   ....+
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------~~~~~   73 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT-----------------------------------EREAL   73 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH-----------------------------------HHHHH
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHH-----------------------------------HHHHH
Confidence            5899999999999986       25789999988742211                                   11234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh-----------------cCCCHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------LGVDRKRLGR  434 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~-----------------~g~d~~~la~  434 (760)
                      .+|+..+.++    .++++|.--.-+.......+|+|||++|+++.++.....                 ..++...+..
T Consensus        74 ~~E~~~~~~l----~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  149 (311)
T d1t46a_          74 MSELKVLSYL----GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLS  149 (311)
T ss_dssp             HHHHHHHHHH----CCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHH
T ss_pred             HHHHHHHHhc----cCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHH
Confidence            5666666655    234443322222233456799999999999998754321                 1233333222


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          435 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       435 ~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      ..  +...++.+|.+|++|+|+||.||+++.  ++.++++|||++..+........    .....+.+.+++++...-+.
T Consensus       150 ~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~--~~~~ki~DfG~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~  223 (311)
T d1t46a_         150 FSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPESIFNCV  223 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCeeecccccccccccc--cCcccccccchheeccCCCcceE----eeecccChHHcCHHHhcCCC
Confidence            22  334478899999999999999999986  78999999999988765433211    12234677888999888888


Q ss_pred             CCCCCChHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l  530 (760)
                      .++..|+++++-.+.+++
T Consensus       224 ~~~~~DIwS~G~~l~ell  241 (311)
T d1t46a_         224 YTFESDVWSYGIFLWELF  241 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccchHHHHHHHH
Confidence            888899999998777665

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-16  Score=166.07  Aligned_cols=189  Identities=20%  Similarity=0.175  Sum_probs=126.4

Q ss_pred             cccccccccEEEEEEE--C-CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEA  375 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~-G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA  375 (760)
                      +.||+|+||.||+|++  + |+.||||+.+....+.                       ..   ..        ...+|.
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-----------------------~~---~~--------~~~~E~   58 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------GM---PL--------STIREV   58 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------SC---BC--------THHHHH
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-----------------------hH---HH--------HHHHHH
Confidence            5799999999999998  3 6889999876532211                       00   00        112344


Q ss_pred             HHHHHHHHhcCCCCceeeceeee----ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          376 ANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       376 ~nl~~f~~~~~~~~~V~VP~vy~----e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      ..++.+.. +.+..-+.+-.++.    +.....+++|||++|..+.........+.+...+...+  +-..++.+|.+|+
T Consensus        59 ~~l~~l~~-~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  137 (305)
T d1blxa_          59 AVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRV  137 (305)
T ss_dssp             HHHHHHHH-TCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhh-cCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            44444432 12222233333332    12245699999999987765544444445544433222  2244788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~~~~~~  529 (760)
                      +|+|+||.|||++.  ++.++++|||++.........       ....+++.+++++++.-...++..|+++++-.+.++
T Consensus       138 vHrDiKp~NILi~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~el  208 (305)
T d1blxa_         138 VHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMAL-------TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEM  208 (305)
T ss_dssp             CCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGGG-------CCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             EecCCCccEEEEcC--CCCeeecchhhhhhhcccccC-------CCcccChhhcCcchhcCCCCChhehhhchHHHHHHH
Confidence            99999999999985  789999999998877654321       223578889999988777778889999999887776


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       209 l~  210 (305)
T d1blxa_         209 FR  210 (305)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.2e-17  Score=168.94  Aligned_cols=186  Identities=16%  Similarity=0.108  Sum_probs=115.8

Q ss_pred             cccccccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANA  378 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl  378 (760)
                      +.||.|++|+||+|+++|+.||||+.+..-.+.                               ...      ..|...+
T Consensus         9 ~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~-------------------------------~~~------e~ei~~~   51 (303)
T d1vjya_           9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREERS-------------------------------WFR------EAEIYQT   51 (303)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEEECGGGHHH-------------------------------HHH------HHHHHTS
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchhH-------------------------------HHH------HHHHHHH
Confidence            569999999999999999999999875421100                               000      0121111


Q ss_pred             HHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-------
Q 004334          379 ELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-------  446 (760)
Q Consensus       379 ~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv--~~~L~qI~~-------  446 (760)
                      .    .+.|..-|.+-.+.....   ...+|||||+++++|.++...  .+.+.........  ...+..+|.       
T Consensus        52 ~----~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~--~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~  125 (303)
T d1vjya_          52 V----MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQG  125 (303)
T ss_dssp             T----TCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTC
T ss_pred             h----hCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            1    122222233333322111   246899999999999998643  3344443333322  233566764       


Q ss_pred             -CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------CCCCCCh
Q 004334          447 -HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------LVPTGDT  519 (760)
Q Consensus       447 -~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~------~~~~~D~  519 (760)
                       .|++|+|+||.|||+++  ++.++|+|||++..+.......  .....-..+++.++++++..-..      .+...|+
T Consensus       126 ~~~IvHrDlKp~NILl~~--~~~~Kl~DFGl~~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di  201 (303)
T d1vjya_         126 KPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI  201 (303)
T ss_dssp             BCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEE--CC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHH
T ss_pred             CCCeeccccCccceEEcC--CCCeEEEecCccccccCCCcce--eccccceecccCcCChhhccccccccCCCcCcchhh
Confidence             59999999999999986  8999999999998775432110  00011234678889998875432      2334689


Q ss_pred             HHHHHHHHHHHH
Q 004334          520 TAVRRTAQFFLN  531 (760)
Q Consensus       520 ~al~~~~~~~l~  531 (760)
                      ++++-.+.+++.
T Consensus       202 ~S~Gvvl~el~t  213 (303)
T d1vjya_         202 YAMGLVFWEIAR  213 (303)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhh
Confidence            999988777654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-16  Score=164.00  Aligned_cols=189  Identities=13%  Similarity=0.092  Sum_probs=122.7

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|+||.||+|+.  +|+.||||+.+......                    .  ....+.        ..+.+|..
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--------------------~--~~~~~~--------~~~~~E~~   59 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISD--------------------W--GELPNG--------TRVPMEVV   59 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCC--------------------E--EECTTC--------CEEEHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccc--------------------h--hhhhHH--------HHHHHHHH
Confidence            5799999999999998  69999999876532110                    0  000000        01234556


Q ss_pred             HHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCC-CchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcccc
Q 004334          377 NAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHA  452 (760)
Q Consensus       377 nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG-~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHa  452 (760)
                      .+.++..   .+++ |.+-.++ +.....++||||++| ..+.++.. ....++...+...+  +-..+..+|..|++|+
T Consensus        60 il~~l~~---~h~nIv~~~~~~-~~~~~~~lv~e~~~~~~~l~~~~~-~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHr  134 (273)
T d1xwsa_          60 LLKKVSS---GFSGVIRLLDWF-ERPDSFVLILERPEPVQDLFDFIT-ERGALQEELARSFFWQVLEAVRHCHNCGVLHR  134 (273)
T ss_dssp             HHHHHCS---SSCSBCCEEEEE-ECSSEEEEEEECCSSEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             HHHHhcc---CCCCccEEEEEE-eeCCeEEEEEEeccCcchHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            6666532   1222 2222222 344567999999987 45555432 22334444433332  2234788999999999


Q ss_pred             CCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCChHHHHHHHHHHHH
Q 004334          453 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQFFLN  531 (760)
Q Consensus       453 DpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~-~~~~D~~al~~~~~~~l~  531 (760)
                      |+||+|||++. +++.++|+|||++.........        -..+++.+++++++.-+.. +...|+++++-.+.+++.
T Consensus       135 DiKp~NIll~~-~~~~vkl~DFG~a~~~~~~~~~--------~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~  205 (273)
T d1xwsa_         135 DIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC  205 (273)
T ss_dssp             CCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccceEEec-CCCeEEECccccceeccccccc--------ccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhh
Confidence            99999999984 3579999999999877654321        1347888999998765433 455799999988877654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-16  Score=164.93  Aligned_cols=187  Identities=16%  Similarity=0.120  Sum_probs=122.6

Q ss_pred             cccccccccEEEEEEEC---------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~  369 (760)
                      +.||.|+||+||+|+..         +..||||+.+++..+.                                   ...
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~-----------------------------------~~~   63 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK-----------------------------------DLS   63 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHH-----------------------------------HHH
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChH-----------------------------------HHH
Confidence            68999999999999872         2479999987754322                                   011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------------cCCCHHHHHH
Q 004334          370 VLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLGR  434 (760)
Q Consensus       370 ~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------------~g~d~~~la~  434 (760)
                      .+.+|...+.++.   .+..-|.+-.++ ......++||||++|+++.++.....               ..++...+..
T Consensus        64 ~~~~e~~~l~~~~---~HpnIv~~~~~~-~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (299)
T d1fgka_          64 DLISEMEMMKMIG---KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVS  139 (299)
T ss_dssp             HHHHHHHHHHHHC---CCTTBCCEEEEE-CSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCCeEEeccccc-ccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHH
Confidence            2344555555442   233333443434 33456799999999999999764332               1133333332


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004334          435 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  512 (760)
Q Consensus       435 ~l--v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~  512 (760)
                      ..  +...++.+|.+|++|+|+||.|||++.  ++.++|.|||++..++.......    .....+.+.+++++.+..+.
T Consensus       140 ~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~l~~~~  213 (299)
T d1fgka_         140 CAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPEALFDRI  213 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECT--TCCEEECSTTCCCCGGGCCTTCC----CTTSCCGGGGSCHHHHHHCC
T ss_pred             HHHHHHHHHHHhhhCCEEeeeecccceeecC--CCCeEeccchhhccccccccccc----cccCCCChhhhhhhHhcCCC
Confidence            22  223478899999999999999999986  88999999999988765432211    01123556788888888888


Q ss_pred             CCCCCChHHHHHHHHHHH
Q 004334          513 LVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       513 ~~~~~D~~al~~~~~~~l  530 (760)
                      .++..|+++++-.+.+++
T Consensus       214 y~~k~DiwS~Gvvl~ell  231 (299)
T d1fgka_         214 YTHQSDVWSFGVLLWEIF  231 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhHHhHHHHHHhc
Confidence            888899999998877765

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.6e-16  Score=164.54  Aligned_cols=181  Identities=19%  Similarity=0.238  Sum_probs=119.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      ++||.|+||.||+|+.  +|+.||||+.+......                                  .....+.+|.+
T Consensus        24 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~~~~~~Ei~   69 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE----------------------------------LFAKRAYRELR   69 (346)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEchhhcCh----------------------------------HHHHHHHHHHH
Confidence            5899999999999998  59999999976532111                                  12233456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  449 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gf  449 (760)
                      .+.++    .+..-|.+-.++...     ....+|||||+ |..+.++..  ...++...+...+  +-..+..+|..|+
T Consensus        70 il~~l----~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~I  142 (346)
T d1cm8a_          70 LLKHM----RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK--HEKLGEDRIQFLVYQMLKGLRYIHAAGI  142 (346)
T ss_dssp             HHHHC----CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHhc----CCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            66665    233334444444322     12459999999 666666543  2345544433332  2244788999999


Q ss_pred             cccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHH
Q 004334          450 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQF  528 (760)
Q Consensus       450 fHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~  528 (760)
                      +|+|+||+|||++.  ++.++++|||++...+....         ...+++.+++++.+. ....+...|+++++-.+.+
T Consensus       143 iHrDiKp~NIL~~~--~~~~kl~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~e  211 (346)
T d1cm8a_         143 IHRDLKPGNLAVNE--DCELKILDFGLARQADSEMT---------GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAE  211 (346)
T ss_dssp             ECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCC---------SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHH
T ss_pred             cccccCcchhhccc--ccccccccccceeccCCccc---------cccccccccCHHHHcCCCCCCccchhhcchHHHHH
Confidence            99999999999986  89999999999998876532         124667777887664 3455778899999988777


Q ss_pred             HHH
Q 004334          529 FLN  531 (760)
Q Consensus       529 ~l~  531 (760)
                      ++.
T Consensus       212 ll~  214 (346)
T d1cm8a_         212 MIT  214 (346)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=164.91  Aligned_cols=186  Identities=15%  Similarity=0.082  Sum_probs=126.7

Q ss_pred             cccccccccEEEEEEEC-------CeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l~-------G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      +.||.|+||.||+|++.       ++.||||+.++.....                                   -...+
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~-----------------------------------~~~~~   70 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR-----------------------------------ERIEF   70 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH-----------------------------------HHHHH
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChH-----------------------------------HHHHH
Confidence            67999999999999873       5789999876532111                                   11234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhh---------cCCCHHHHHHH--HHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRY--AVESY  440 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~---------~g~d~~~la~~--lv~~~  440 (760)
                      .+|+..+.++    .+...|.+-.++ ......++||||++|++|.++.....         ...+...+...  .+...
T Consensus        71 ~~E~~il~~l----~h~nIv~~~~~~-~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~g  145 (308)
T d1p4oa_          71 LNEASVMKEF----NCHHVVRLLGVV-SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG  145 (308)
T ss_dssp             HHHHHHGGGC----CCTTBCCEEEEE-CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc----CCCCEeeeeeEE-ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHH
Confidence            5566655544    233333333333 34567899999999999998754221         11233333222  23345


Q ss_pred             HHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChH
Q 004334          441 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  520 (760)
Q Consensus       441 L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~  520 (760)
                      +..+|..+++|+|+||.|||++.  +++++|+|||++..+........    ..-..+.+.+++++....+..++..|++
T Consensus       146 l~~LH~~~ivHrDlk~~NiLld~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~~t~~y~aPe~l~~~~~~~~~Dv~  219 (308)
T d1p4oa_         146 MAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFTTYSDVW  219 (308)
T ss_dssp             HHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHHhhCCeeeceEcCCceeecC--CceEEEeecccceeccCCcceee----ccceecccccCCHHHHccCCCCcccccc
Confidence            88899999999999999999985  88999999999987755432111    1112356888899988888888888999


Q ss_pred             HHHHHHHHHH
Q 004334          521 AVRRTAQFFL  530 (760)
Q Consensus       521 al~~~~~~~l  530 (760)
                      ++.-.+.+++
T Consensus       220 S~G~il~El~  229 (308)
T d1p4oa_         220 SFGVVLWEIA  229 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9998776665

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.61  E-value=2.4e-16  Score=163.48  Aligned_cols=184  Identities=17%  Similarity=0.121  Sum_probs=120.7

Q ss_pred             cccccccccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAAN  377 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~n  377 (760)
                      +.||+|++|.||+|+. +|+.||||+.+......                                  .....+.+|+..
T Consensus         8 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~~~~~E~~i   53 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE----------------------------------GIPSTTIREISI   53 (286)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG----------------------------------CCCHHHHHHHHG
T ss_pred             cEEecCCCcEEEEEEeCCCCEEEEEEEehhhcCh----------------------------------HHHHHHHHHHHH
Confidence            6899999999999999 69999999875531110                                  001234456666


Q ss_pred             HHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCC
Q 004334          378 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPH  455 (760)
Q Consensus       378 l~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~GffHaDpH  455 (760)
                      ++++    .+..-|.+ .-+....+..+++||++.|..+..+.. ....++...+....  +-..++.+|..|++|+|+|
T Consensus        54 l~~l----~hpnIv~~-~~~~~~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiK  127 (286)
T d1ob3a_          54 LKEL----KHSNIVKL-YDVIHTKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK  127 (286)
T ss_dssp             GGGC----CCTTBCCE-EEEEECSSCEEEEEECCSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HHhC----CCCcEEee-eeecccCCceeEEEEeehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCC
Confidence            6554    22222222 222345577899999999987776643 22334444333322  2335888999999999999


Q ss_pred             CCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCChHHHHHHHHHHH
Q 004334          456 PGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       456 PGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~-lG~~~~~~D~~al~~~~~~~l  530 (760)
                      |.|||++.  ++.++++|||.+..++.......      ...+.+.+++++... ....++..|+++++..+.+++
T Consensus       128 p~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~------~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~  195 (286)
T d1ob3a_         128 PQNLLINR--EGELKIADFGLARAFGIPVRKYT------HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV  195 (286)
T ss_dssp             GGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHH
T ss_pred             CceeeEcC--CCCEEecccccceecccCccccc------eecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHH
Confidence            99999986  89999999999988765432211      112455566666654 344567789999998877665

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.6e-16  Score=164.58  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=121.3

Q ss_pred             cccccccccEEEEEEE--CCe--eEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~--~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~E  374 (760)
                      +.||.|+||.||+|++  +|.  .||||..+....+.                                   ..+.+.+|
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~~~~~E   60 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------DHRDFAGE   60 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------CHHHHH
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChH-----------------------------------HHHHHHHH
Confidence            6899999999999998  465  46777654421111                                   11124456


Q ss_pred             HHHHHHHHHhcCCCCc-eeeceeeeccCCCeEEEEeecCCCchhhhhhhh---------------hcCCCHHHHHHHH--
Q 004334          375 AANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---------------ELGVDRKRLGRYA--  436 (760)
Q Consensus       375 A~nl~~f~~~~~~~~~-V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~---------------~~g~d~~~la~~l--  436 (760)
                      ++.+.++    .++++ |.+-.++ ...+..++||||++|++|.++....               ...++...+....  
T Consensus        61 ~~~l~~l----~~HpnIv~~~~~~-~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  135 (309)
T d1fvra_          61 LEVLCKL----GHHPNIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD  135 (309)
T ss_dssp             HHHHTTC----CCCTTBCCEEEEE-EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHH
T ss_pred             HHHHHhc----cCCCCEeeEEEEE-ecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHH
Confidence            6555543    22333 3333333 3345679999999999999976321               1223333332222  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          437 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       437 v~~~L~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      +...++.+|..|++|+|++|.|||++.  ++.++|+|||++..........       ...+...+++++.+.-+..++.
T Consensus       136 ia~gl~~lH~~~iiHrDlkp~NIL~~~--~~~~kl~DfG~a~~~~~~~~~~-------~~~gt~~y~aPE~l~~~~~~~~  206 (309)
T d1fvra_         136 VARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLNYSVYTTN  206 (309)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHCEECHH
T ss_pred             HHHHHHhhhcCCccccccccceEEEcC--CCceEEcccccccccccccccc-------ceecCCcccchHHhccCCCCcc
Confidence            233478899999999999999999986  7899999999998776543321       1235566777777777777788


Q ss_pred             CChHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFL  530 (760)
Q Consensus       517 ~D~~al~~~~~~~l  530 (760)
                      .|+++++-.+.+++
T Consensus       207 sDvwSfGvil~ell  220 (309)
T d1fvra_         207 SDVWSYGVLLWEIV  220 (309)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHH
Confidence            89999998877665

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.3e-16  Score=165.06  Aligned_cols=187  Identities=15%  Similarity=0.135  Sum_probs=123.1

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||+|++|+||+|+.  +|+.||||+.++.-.                                   ......+.+|..
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-----------------------------------~~~~~~~~~Ei~   58 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEH-----------------------------------QTYCQRTLREIK   58 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEEEEECCTTC-----------------------------------HHHHHHHHHHHH
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEEEEEehhcC-----------------------------------hHHHHHHHHHHH
Confidence            6899999999999998  699999999765211                                   111223456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC---CCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFH  451 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s---t~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~L~qI~~~GffH  451 (760)
                      .+..+    .+...+.+..++...+   ...+++|+|+.|++|.++...  .+++...+...+.+  ..++.+|..|++|
T Consensus        59 il~~l----~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~--~~l~~~~i~~i~~qil~al~yLH~~~iiH  132 (345)
T d1pmea_          59 ILLRF----RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKT--QHLSNDHICYFLYQILRGLKYIHSANVLH  132 (345)
T ss_dssp             HHHHC----CCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHc----CCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcC
Confidence            77665    2333344444443322   234666777889999987643  34555544433322  3488899999999


Q ss_pred             cCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHHHHHHH
Q 004334          452 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       452 aDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~~~~~l  530 (760)
                      ||+||+|||++.  ++.++|+|||++..+.........   .....+.+.+++++++..+ ...+..|+++++-.+.+++
T Consensus       133 RDIKp~NILl~~--~~~~kl~DfG~a~~~~~~~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml  207 (345)
T d1pmea_         133 RDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTGF---LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEML  207 (345)
T ss_dssp             CCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCCT---TCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEECC--CCCEEEcccCceeeccCCCcccee---eccccccceechHHHhhcCCCCCchhhhhccCceehHHh
Confidence            999999999985  789999999999887665322100   1112356677888876544 3356679999998877765


Q ss_pred             H
Q 004334          531 N  531 (760)
Q Consensus       531 ~  531 (760)
                      .
T Consensus       208 ~  208 (345)
T d1pmea_         208 S  208 (345)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=159.18  Aligned_cols=182  Identities=18%  Similarity=0.169  Sum_probs=120.0

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+......                                  .....+.+|++
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~~~~~~Ei~   69 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI----------------------------------IHAKRTYRELR   69 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSH----------------------------------HHHHHHHHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECchhcCh----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999976532111                                  11123456777


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc----CCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  450 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~----st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI~~~Gff  450 (760)
                      .+.++    .+...|.+..++...    ....+++|||+.|++|.++...  ..++...+...+  +-..+..+|..|++
T Consensus        70 il~~l----~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~--~~l~e~~~~~i~~qil~aL~~LH~~gii  143 (348)
T d2gfsa1          70 LLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSADII  143 (348)
T ss_dssp             HHHHC----CCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhc----CCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc--ccccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            77665    233344455554322    2234777888899999987643  235544443332  22447889999999


Q ss_pred             ccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHH
Q 004334          451 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFF  529 (760)
Q Consensus       451 HaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~  529 (760)
                      |||+||+|||++.  +|.++++|||.+...+......         .+.+.+++++.... ...+...|+++++..+.++
T Consensus       144 HrDiKp~NILi~~--~~~~kl~dfg~a~~~~~~~~~~---------~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~l  212 (348)
T d2gfsa1         144 HRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTGY---------VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL  212 (348)
T ss_dssp             CCCCCGGGEEECT--TCCEEECCC----CCTGGGSSS---------CHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHH
T ss_pred             ccccCCccccccc--cccccccccchhcccCcccccc---------cccccccCchhhcCCccCCcccchhhhhHHHHHH
Confidence            9999999999986  8999999999998876653321         23445556665433 4456778999999887766


Q ss_pred             HH
Q 004334          530 LN  531 (760)
Q Consensus       530 l~  531 (760)
                      +.
T Consensus       213 l~  214 (348)
T d2gfsa1         213 LT  214 (348)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=157.20  Aligned_cols=183  Identities=16%  Similarity=0.072  Sum_probs=120.6

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+......                                  .....+.+|..
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~~~~~E~~   53 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPSSALREIC   53 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THHHHHHHHHH
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEEEEEehhhCCh----------------------------------HHHHHHHHHHH
Confidence            5799999999999998  68999999986532111                                  11123445665


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHhCCccccC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILSHGFFHAD  453 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la---~~lv~~~L~qI~~~GffHaD  453 (760)
                      .+.++    . +++|.-..-+.......+++||++.|..+..+.... .......+.   ..++ ..++.+|..|++|+|
T Consensus        54 il~~l----~-h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~q~~-~aL~~lH~~~IvHrD  126 (292)
T d1unla_          54 LLKEL----K-HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLL-KGLGFCHSRNVLHRD  126 (292)
T ss_dssp             HHTTC----C-CTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHH-HHHHHHHHTTEECCC
T ss_pred             HHHhc----C-cCCEEeeccccccccceeEEeeeccccccccccccc-cccchhHHHHHHHHHH-HHHHHhhcCCEeeec
Confidence            55544    2 333322222334456679999999999888765322 223333322   2223 347889999999999


Q ss_pred             CCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHH
Q 004334          454 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  530 (760)
Q Consensus       454 pHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~~~~l  530 (760)
                      +||+|||++.  ++.++++|||.+..++.......      .........++++... ...++..|+++++-.+.+++
T Consensus       127 iKP~NIli~~--~~~~kl~DFG~a~~~~~~~~~~~------~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell  196 (292)
T d1unla_         127 LKPQNLLINR--NGELKLANFGLARAFGIPVRCYS------AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA  196 (292)
T ss_dssp             CSGGGEEECT--TCCEEECCCTTCEECCSCCSCCC------SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHT
T ss_pred             ccCccccccc--CCceeeeecchhhcccCCCccce------eeccccchhhhhHhccCCCCCchhhccccchHHHHHh
Confidence            9999999985  78999999999998765432110      1123445556665543 34567789999998776664

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=161.79  Aligned_cols=181  Identities=19%  Similarity=0.183  Sum_probs=116.2

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|+||.||+|+.  +|+.||||+.+.+-. .                                       ..+|.+
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-~---------------------------------------~~~Ei~   65 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-F---------------------------------------KNRELQ   65 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-S---------------------------------------CCHHHH
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccch-H---------------------------------------HHHHHH
Confidence            6799999999999999  599999999765311 0                                       013444


Q ss_pred             HHHHHHHhcCCCCceeeceeeeccC-----CCeEEEEeecCCCchhhhhhh--hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYA--VESYLEQILSH  447 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~s-----t~~vLVME~ieG~~L~d~~~l--~~~g~d~~~la~~l--v~~~L~qI~~~  447 (760)
                      .+.++    .+..-+.+..++....     ...+|||||++|.....+...  ....++...+...+  +-..++.+|.+
T Consensus        66 il~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~  141 (350)
T d1q5ka_          66 IMRKL----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF  141 (350)
T ss_dssp             HHHHC----CCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhc----CCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            44443    2333344444442221     124899999998755554322  12234443332222  23448889999


Q ss_pred             CccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCChHHHHHHH
Q 004334          448 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  526 (760)
Q Consensus       448 GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~l-G~~~~~~D~~al~~~~  526 (760)
                      |++|||+||+|||++. ++..++|+|||++..+.......       -..+...+++++.... ...++..|+++++-.+
T Consensus       142 ~IiHrDiKp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il  213 (350)
T d1q5ka_         142 GICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPNV-------SYICSRYYRAPELIFGATDYTSSIDVWSAGCVL  213 (350)
T ss_dssp             TEECCCCCGGGEEECT-TTCCEEECCCTTCEECCTTSCCC-------SCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred             CCcccCCCcceEEEec-CCCceeEecccchhhccCCcccc-------cccccccccChHHhhcccCCCcceeecccceEE
Confidence            9999999999999985 23489999999998876543211       1234556666665543 3456778999999877


Q ss_pred             HHHHH
Q 004334          527 QFFLN  531 (760)
Q Consensus       527 ~~~l~  531 (760)
                      .+++.
T Consensus       214 ~el~~  218 (350)
T d1q5ka_         214 AELLL  218 (350)
T ss_dssp             HHHHH
T ss_pred             Eehhh
Confidence            66653

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-15  Score=159.33  Aligned_cols=186  Identities=19%  Similarity=0.202  Sum_probs=115.8

Q ss_pred             ccCc-cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHH
Q 004334          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (760)
Q Consensus       295 ~fd~-~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l  371 (760)
                      .|+. +.||.|+||.||+|++  +|+.||||+.+......                                  +....+
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~----------------------------------~~~~~~   63 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------THAKRA   63 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSH----------------------------------HHHHHH
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCH----------------------------------HHHHHH
Confidence            4543 6999999999999998  59999999986532211                                  111234


Q ss_pred             HHHHHHHHHHHHhcCCCCceeeceeee-----ccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004334          372 YQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  444 (760)
Q Consensus       372 ~~EA~nl~~f~~~~~~~~~V~VP~vy~-----e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~l--v~~~L~qI  444 (760)
                      .+|...++++    .+..-|.+-.++.     +..+..++||||+.|..+..+.    ..++...+....  +-..+..+
T Consensus        64 ~~Ei~il~~l----~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~L  135 (355)
T d2b1pa1          64 YRELVLMKCV----NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHL  135 (355)
T ss_dssp             HHHHHHHHHC----CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----CCCCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHHh
Confidence            5666666554    2222233333332     2235669999999987666542    223444333332  23447889


Q ss_pred             HhCCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCChHHHHH
Q 004334          445 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  524 (760)
Q Consensus       445 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~~D~~al~~  524 (760)
                      |..|++|+|+||.|||++.  ++.++++|||+....+......       ...++..+++++.+.-...++..|+++++-
T Consensus       136 H~~giiHrDlKP~Nil~~~--~~~~kl~df~~~~~~~~~~~~~-------~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~  206 (355)
T d2b1pa1         136 HSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMMT-------PYVVTRYYRAPEVILGMGYKENVDIWSVGC  206 (355)
T ss_dssp             HHTTCCCSCCCGGGEEECT--TCCEEECCCCC----------------------CCTTCCHHHHTTCCCCTTHHHHHHHH
T ss_pred             hhcccccccCCcccccccc--ccceeeechhhhhccccccccc-------cccccccccChhhhcCCCCCCCcccccccc
Confidence            9999999999999999985  7899999999988776654322       123455677777776556677889999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+.+++.
T Consensus       207 ~l~ell~  213 (355)
T d2b1pa1         207 IMGEMVR  213 (355)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHhh
Confidence            7766653

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.7e-15  Score=155.53  Aligned_cols=193  Identities=17%  Similarity=0.182  Sum_probs=125.1

Q ss_pred             ccCc-cccccccccEEEEEEE-----CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHH
Q 004334          295 RFDV-EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (760)
Q Consensus       295 ~fd~-~PIasaSiGQVhrA~l-----~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~  368 (760)
                      .|+. +.||.|++|.||+|+.     +|+.||||+.++.....                           +     +...
T Consensus        25 ~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~---------------------------~-----~~~~   72 (322)
T d1vzoa_          25 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ---------------------------K-----AKTT   72 (322)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE---------------------------E-----ESSG
T ss_pred             ceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhcc---------------------------c-----hHHH
Confidence            3443 7899999999999987     38999999876521100                           0     0000


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHh
Q 004334          369 SVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILS  446 (760)
Q Consensus       369 ~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~d~~~l~~~g~d~~~la~~--lv~~~L~qI~~  446 (760)
                      +.+.+|++.+.++.+    +++|.--.-+.+.....+++|||++|++|.+...... ......+...  .+-..++.+|.
T Consensus        73 ~~~~~E~~il~~l~h----~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~~~~~Qi~~al~~lH~  147 (322)
T d1vzoa_          73 EHTRTERQVLEHIRQ----SPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHK  147 (322)
T ss_dssp             GGCCCHHHHHHHHHT----CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC----CCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHhhc
Confidence            123456677777743    3333222223344566799999999999988654322 1222222221  23345788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCChHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRR  524 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG--~~~~~~D~~al~~  524 (760)
                      .|++|+|+||.||+++.  +|.++|+|||++..+........     ....+.+.+++++....+  ..++..|+++++-
T Consensus       148 ~~ivHrDiKp~Nill~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~  220 (322)
T d1vzoa_         148 LGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGV  220 (322)
T ss_dssp             TTCCCCCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHH
T ss_pred             CCEEeccCCccceeecC--CCCEEEeeccchhhhcccccccc-----cccccccccchhHHhhcCCcCCCchhhhHHHHH
Confidence            99999999999999986  78999999999998865433211     112455666777776543  2345679999998


Q ss_pred             HHHHHHH
Q 004334          525 TAQFFLN  531 (760)
Q Consensus       525 ~~~~~l~  531 (760)
                      .+++++.
T Consensus       221 iLyellt  227 (322)
T d1vzoa_         221 LMYELLT  227 (322)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877764

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.1e-15  Score=156.16  Aligned_cols=189  Identities=15%  Similarity=0.082  Sum_probs=118.8

Q ss_pred             cccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHH
Q 004334          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAA  376 (760)
Q Consensus       299 ~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~  376 (760)
                      +.||.|++|+||+|+.  +|+.||||+.+..-...                                  .....+.+|..
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~~~~~E~~   61 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE----------------------------------GFPITALREIK   61 (318)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC----CTT----------------------------------SSCHHHHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch----------------------------------HHHHHHHHHHH
Confidence            6899999999999998  69999999864321000                                  01112345666


Q ss_pred             HHHHHHHhcCCCCceeeceeeecc-------CCCeEEEEeecCCCchhhhhhhhhcCCCHHHH---HHHHHHHHHHHHHh
Q 004334          377 NAELFASNFKDMDYVKVPTIFWEY-------TTPQILTMEYVPGIKINRIQSLDELGVDRKRL---GRYAVESYLEQILS  446 (760)
Q Consensus       377 nl~~f~~~~~~~~~V~VP~vy~e~-------st~~vLVME~ieG~~L~d~~~l~~~g~d~~~l---a~~lv~~~L~qI~~  446 (760)
                      .+.++    .+...+.+..++...       ....+++|||+++..+..... .........+   +..+ -..++.+|.
T Consensus        62 il~~l----~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~qi-l~~l~~lH~  135 (318)
T d3blha1          62 ILQLL----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQML-LNGLYYIHR  135 (318)
T ss_dssp             HHHHC----CCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHh----cCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHHHH-HHHHHHhcc
Confidence            66655    333344444444321       234689999999877654322 1222333322   2222 334788999


Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCChHHHHHH
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  525 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG-~~~~~~D~~al~~~  525 (760)
                      .|++|+|+||.|||++.  ++.+++.|||++..++........  ......++..+++++++... ..++..|+++++-.
T Consensus       136 ~~ivHrDlKp~NILl~~--~~~~kl~dfg~~~~~~~~~~~~~~--~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvi  211 (318)
T d3blha1         136 NKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPN--RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCI  211 (318)
T ss_dssp             TTEECCCCCGGGEEECT--TSCEEECCCTTCEECCC-----CC--CCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             CCEEecCcCchheeecC--CCcEEeeecceeeecccccccccc--cccceecCHHHhhHHHHcCCCCCCcHHHcccCCce
Confidence            99999999999999985  889999999999887754322110  00011356777888876532 34677899999988


Q ss_pred             HHHHHH
Q 004334          526 AQFFLN  531 (760)
Q Consensus       526 ~~~~l~  531 (760)
                      +.+++.
T Consensus       212 l~el~~  217 (318)
T d3blha1         212 MAEMWT  217 (318)
T ss_dssp             HHHHHH
T ss_pred             eeeHhh
Confidence            777653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.1e-12  Score=139.11  Aligned_cols=186  Identities=11%  Similarity=0.043  Sum_probs=112.0

Q ss_pred             ccccccccccEEEEEEE--CCeeEEEEEecCCc--hhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGL--KDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       298 ~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi--~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      .+.||.|++|+||+|+.  +|+.||||+.+..-  .+...                                       +
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~---------------------------------------~   58 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAE---------------------------------------D   58 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHH---------------------------------------H
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHH---------------------------------------H
Confidence            36899999999999998  69999999987631  11222                                       2


Q ss_pred             HHHHHHHHHHh-------cCCCCceeeceee-eccCCCeEEEEeecCCCchhhhh--hhhhcCCCHHHHHHHH--HHHHH
Q 004334          374 EAANAELFASN-------FKDMDYVKVPTIF-WEYTTPQILTMEYVPGIKINRIQ--SLDELGVDRKRLGRYA--VESYL  441 (760)
Q Consensus       374 EA~nl~~f~~~-------~~~~~~V~VP~vy-~e~st~~vLVME~ieG~~L~d~~--~l~~~g~d~~~la~~l--v~~~L  441 (760)
                      |.+.++++.+.       +.+..-+.+...+ .......+++|+++.+.......  ...........+....  +-..+
T Consensus        59 Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al  138 (362)
T d1q8ya_          59 EIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL  138 (362)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHH
Confidence            22222222210       0011112222221 11223456777776655433221  1122223333332222  22336


Q ss_pred             HHHHh-CCccccCCCCCcEEEeccCC----CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004334          442 EQILS-HGFFHADPHPGNIAVDDVNG----GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  516 (760)
Q Consensus       442 ~qI~~-~GffHaDpHPGNILV~~~~~----g~l~LiDFG~v~~l~~~~r~~l~~l~~al~~~D~~~v~~~l~~lG~~~~~  516 (760)
                      ..+|. .|++|+|+||+|||++....    ..++++|||.+........         ...+++.++++++...+..++.
T Consensus       139 ~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~  209 (362)
T d1q8ya_         139 DYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT---------NSIQTREYRSPEVLLGAPWGCG  209 (362)
T ss_dssp             HHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC---------SCCSCGGGCCHHHHHTCCCCTH
T ss_pred             HHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccc---------cccccccccChhhccccCCCcc
Confidence            77886 99999999999999975212    2599999999987765432         1246777888888877767788


Q ss_pred             CChHHHHHHHHHHHH
Q 004334          517 GDTTAVRRTAQFFLN  531 (760)
Q Consensus       517 ~D~~al~~~~~~~l~  531 (760)
                      .|+++++-.+..++.
T Consensus       210 ~DiwSlG~il~el~~  224 (362)
T d1q8ya_         210 ADIWSTACLIFELIT  224 (362)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHH
Confidence            899999987766553

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.80  E-value=3.1e-08  Score=98.65  Aligned_cols=145  Identities=21%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             hcccCcccccccc-ccEEEEEEE-CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHH
Q 004334          293 FERFDVEPIAAAS-LGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (760)
Q Consensus       293 F~~fd~~PIasaS-iGQVhrA~l-~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~  370 (760)
                      ....+-+|++.|. -++||+... .|..+++|+.+|+-...+                                      
T Consensus        10 l~g~~~~~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~~~l--------------------------------------   51 (255)
T d1nd4a_          10 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNEL--------------------------------------   51 (255)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCH--------------------------------------
T ss_pred             ccCCceEEcCCcccCCeEEEEEeCCCCEEEEEeCCccCHhHH--------------------------------------
Confidence            3344556777765 579999999 467799999888643332                                      


Q ss_pred             HHHHHHHHHHHHHhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhhhh--------h-------hhh-----cCCC
Q 004334          371 LYQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQ--------S-------LDE-----LGVD  428 (760)
Q Consensus       371 l~~EA~nl~~f~~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d~~--------~-------l~~-----~g~d  428 (760)
                       ..|++.++.+..     ..+.+|+++..  ..+..+++|||++|.++.+..        .       +..     .+..
T Consensus        52 -~~E~~~l~~L~~-----~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~  125 (255)
T d1nd4a_          52 -QDEAARLSWLAT-----TGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFD  125 (255)
T ss_dssp             -HHHHHHHHHHHT-----TTCCBCCEEEEEECSSCEEEEEECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCB
T ss_pred             -HHHHHHHHHHHh-----cCCCCCceeeecccccceEEEEEeeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCc
Confidence             234444444432     23678998853  345679999999998875421        0       000     0000


Q ss_pred             --H-HHHHHH---------------------HHHHHHHHHHh-------CCccccCCCCCcEEEeccCCCcEEEEeecce
Q 004334          429 --R-KRLGRY---------------------AVESYLEQILS-------HGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  477 (760)
Q Consensus       429 --~-~~la~~---------------------lv~~~L~qI~~-------~GffHaDpHPGNILV~~~~~g~l~LiDFG~v  477 (760)
                        . ..+...                     .....+..+..       ..++|+|+||+|||+++  ++.+.+|||+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~--~~~~~iID~~~~  203 (255)
T d1nd4a_         126 HQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVEN--GRFSGFIDCGRL  203 (255)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEET--TEEEEECCCTTC
T ss_pred             ccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCceEEeCCCCCcceEEeC--CceEEEEEchhc
Confidence              0 000000                     01111222222       23899999999999984  444679999999


Q ss_pred             eccChh
Q 004334          478 GSISPN  483 (760)
Q Consensus       478 ~~l~~~  483 (760)
                      +.-++.
T Consensus       204 ~~g~~~  209 (255)
T d1nd4a_         204 GVADRY  209 (255)
T ss_dssp             EEEETH
T ss_pred             ccCCHH
Confidence            875543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.32  E-value=3.1e-06  Score=84.04  Aligned_cols=74  Identities=15%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             cccccEEEEEEECCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004334          303 AASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFA  382 (760)
Q Consensus       303 saSiGQVhrA~l~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~  382 (760)
                      .+|.+.||+...+++.++||...++....                            ..        .+..|+..+..+.
T Consensus        24 G~s~~~v~rv~~~~~~~vlk~~~~~~~~~----------------------------~~--------~~~~E~~~l~~l~   67 (263)
T d1j7la_          24 GMSPAKVYKLVGENENLYLKMTDSRYKGT----------------------------TY--------DVEREKDMMLWLE   67 (263)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEECGGGTTS----------------------------TT--------CHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEEeCCCeEEEEEcCCCcccc----------------------------hh--------hHHHHHHHHHHHh
Confidence            35567999988888888999876532211                            00        1234555555553


Q ss_pred             HhcCCCCceeeceeeec--cCCCeEEEEeecCCCchhh
Q 004334          383 SNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINR  418 (760)
Q Consensus       383 ~~~~~~~~V~VP~vy~e--~st~~vLVME~ieG~~L~d  418 (760)
                      +      .+.+|+++..  .....+++||+++|.++.+
T Consensus        68 ~------~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          68 G------KLPVPKVLHFERHDGWSNLLMSEADGVLCSE   99 (263)
T ss_dssp             T------TSCCCCEEEEEEETTEEEEEEECCSSEEHHH
T ss_pred             c------cCCCCcEEEEEecCCceEEEEEecccccccc
Confidence            2      4778999863  2355699999999988754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=7.7e-07  Score=92.80  Aligned_cols=30  Identities=30%  Similarity=0.317  Sum_probs=24.7

Q ss_pred             CCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          447 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       447 ~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      .+++|+|+||+|||++   ++ ..++||+-++.=
T Consensus       192 ~~liHgDlh~~NvL~~---~~-~~~IDFdd~~~g  221 (325)
T d1zyla1         192 VLRLHGDCHAGNILWR---DG-PMFVDLDDARNG  221 (325)
T ss_dssp             CEECCSSCSGGGEEES---SS-EEECCCTTCCEE
T ss_pred             ceeecCCCCcccEEEe---CC-ceEEechhcccC
Confidence            5789999999999996   34 458999988753

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=3.3e-06  Score=90.46  Aligned_cols=89  Identities=18%  Similarity=0.123  Sum_probs=57.0

Q ss_pred             cCccccccccccEEEEEEE--CCeeEEEEEecCCchhhHHHHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHH
Q 004334          296 FDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (760)
Q Consensus       296 fd~~PIasaSiGQVhrA~l--~G~~VAVKVqrPgi~~~i~~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~  373 (760)
                      ++.++||.|.+-.||+.+.  .|+.|+||.-.|.++..                   +...  .....        ....
T Consensus        29 l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~-------------------g~~~--~~~~~--------R~~~   79 (392)
T d2pula1          29 LTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-------------------GESW--PLTID--------RARI   79 (392)
T ss_dssp             CEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC---------------------CCC--CCCTT--------HHHH
T ss_pred             eeEEEeCCCceEeEEEEEeCCCCeEEEEecCCchhccc-------------------CCCC--CCCHH--------HHHH
Confidence            4456899999999999988  37899999877743211                   0000  01111        1234


Q ss_pred             HHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCCCchh
Q 004334          374 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  417 (760)
Q Consensus       374 EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG~~L~  417 (760)
                      |++.+..+...    ....+|++|.......+++|||++|.++.
T Consensus        80 E~~~L~~~~~~----~p~~vP~v~~~d~~~~~lvmE~L~~~~~~  119 (392)
T d2pula1          80 ESSALIRQGEH----VPHLVPRVFYSDTEMAVTVMEDLSHLKIA  119 (392)
T ss_dssp             HHHHHHHHHTT----CGGGSCCEEEEETTTTEEEECCCTTSEEH
T ss_pred             HHHHHHHhhhh----CCCCcceEEEEcCCCCEEEEeccCCcccc
Confidence            66566555432    33578999976667789999999987653

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=0.00021  Score=72.82  Aligned_cols=33  Identities=21%  Similarity=0.145  Sum_probs=27.8

Q ss_pred             hCCccccCCCCCcEEEeccCCCcEEEEeecceecc
Q 004334          446 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  480 (760)
Q Consensus       446 ~~GffHaDpHPGNILV~~~~~g~l~LiDFG~v~~l  480 (760)
                      ..|++|+|+||+|++++.  ++...++||+.++.-
T Consensus       182 ~~giIHgDl~~dNvl~~~--~~v~gvIDF~~~~~~  214 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLG--DELSGLIDFYFACND  214 (316)
T ss_dssp             CEEEECSCCCGGGEEEET--TEEEEECCCTTCEEE
T ss_pred             ccccccCCcchhhhhccc--ccceeEecccccccc
Confidence            478999999999999984  555689999999753

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.96  E-value=0.0015  Score=68.79  Aligned_cols=107  Identities=18%  Similarity=0.241  Sum_probs=67.2

Q ss_pred             hcCCCCCC--HHHHHHHHHHHhCCChhhh-hcccCccccccccccEEEEEEEC---------CeeEEEEEecCCchhhHH
Q 004334          266 QDQVPPFP--SETAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFD  333 (760)
Q Consensus       266 qd~vpp~p--~~~v~~iie~elG~~~~~i-F~~fd~~PIasaSiGQVhrA~l~---------G~~VAVKVqrPgi~~~i~  333 (760)
                      ..++...|  .+.++.++.+.++..|..+ .+.+.-++++.|-.=++|+....         ++.|++++-- +....+ 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~~i-   89 (395)
T d1nw1a_          12 DTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETES-   89 (395)
T ss_dssp             TCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCCHH-
T ss_pred             cccccccchHHHHHHHHHHHhCcccccCCCccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Ccchhh-
Confidence            34444454  3445667777788777664 23566689999999999999872         2467787732 211110 


Q ss_pred             HHHHHHHHHHHHHhhhCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeceeeeccCCCeEEEEeecCC
Q 004334          334 IDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  413 (760)
Q Consensus       334 ~DL~iL~~la~~l~~~~p~~~~~~~~l~~i~~E~~~~l~~EA~nl~~f~~~~~~~~~V~VP~vy~e~st~~vLVME~ieG  413 (760)
                                                          ...+|.++++.+.+.     ++ .|++|...  +..++|||++|
T Consensus        90 ------------------------------------dr~~E~~i~~~ls~~-----gl-~Pkll~~~--~~g~I~efi~g  125 (395)
T d1nw1a_          90 ------------------------------------HLVAESVIFTLLSER-----HL-GPKLYGIF--SGGRLEEYIPS  125 (395)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-----TS-SSCEEEEE--TTEEEECCCCE
T ss_pred             ------------------------------------HHHHHHHHHHHHHhC-----CC-CCeEEEEc--CCceEEEEecc
Confidence                                                112455666665441     23 68888654  35899999999


Q ss_pred             Cchhh
Q 004334          414 IKINR  418 (760)
Q Consensus       414 ~~L~d  418 (760)
                      .++..
T Consensus       126 ~~l~~  130 (395)
T d1nw1a_         126 RPLSC  130 (395)
T ss_dssp             EECCT
T ss_pred             ccCCh
Confidence            87653